ERROR: benchmark.py script terminated with non-zero exit-code, execution log:
Loading test from: tests/release.py, suite+test: 'release.PyRosetta.conda.Release', test: 'PyRosetta.conda.Release'
Found test suite description in file: 'tests/release.md'
Running PyRosetta conda release test: at working_dir='/Volumes/scratch/w/T/commits-20640.849454.m1.clang.cxx11thread.serialization.python39.release.PyRosetta.conda.Release.0' with rosetta_dir=/Volumes/scratch/w/rosetta/commits/rosetta, platform={'compiler': 'clang', 'extras': ['cxx11thread', 'serialization'], 'os': 'm1', 'python': '3.9'}, jobs=4, memory=16GB, hpc_driver=None...
Install for MiniConda is detected, skipping installation procedure...
Updating conda base...
unset __PYVENV_LAUNCHER__ && unset PYTHONHOME && unset PYTHONPATH && . /Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/bin/activate && conda update --all --yes
Collecting package metadata (current_repodata.json): - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / done
Solving environment: \ | / - \ | done
==> WARNING: A newer version of conda exists. <==
current version: 23.5.2
latest version: 25.1.0
Please update conda by running
$ conda update -n base -c conda-forge conda
Or to minimize the number of packages updated during conda update use
conda install conda=25.1.0
# All requested packages already installed.
Setting up Conda for Python-3.9 virtual environment...
cd /Volumes/scratch/w/T/commits-20640.849454.m1.clang.cxx11thread.serialization.python39.release.PyRosetta.conda.Release.0 && unset __PYVENV_LAUNCHER__ && unset PYTHONHOME && unset PYTHONPATH && . /Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/bin/activate && ( conda create --quiet --yes --prefix /Volumes/scratch/w/T/commits-20640.849454.m1.clang.cxx11thread.serialization.python39.release.PyRosetta.conda.Release.0/.conda-python-3.9 python=3.9 || ( conda clean --yes && conda create --quiet --yes --prefix /Volumes/scratch/w/T/commits-20640.849454.m1.clang.cxx11thread.serialization.python39.release.PyRosetta.conda.Release.0/.conda-python-3.9 python=3.9 ) )
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
...truncated...
T008_Serialization - passed
T009_Exceptions - passed
T010_LoadPDB - passed
T020_Pose_Bindings - passed
T040_Types - passed
T100_basic - passed
T110_numeric - passed
T120_core.RotamerSets - passed
T121_core.ResidueSelector - passed
T150_PyMOL_Integration - passed
T150_core.misc.lkball - passed
T190_Bindings_Utility - passed
T200_Scoring - passed
T201_Scoring_pre_talaris - passed
T220_AtomAtomPairEnergies - passed
T250_Constraints - passed
T300_PyJobDistributor - passed
T400_Refinement - passed
T500_Packing - passed
T600_Docking - passed
T650_LoopsKIC - passed
T660_LoopBuilding - passed
T700_FoldTree - passed
T800_ClassicRelax - passed
T850_SubClassing - passed
T860_SubClassing_EnergyMethods - passed
T870_SubClassing_EnergyMethods2 - passed
T880_Other - passed
T900_distributed - passed
Workshop2test - passed
Workshop3test - passed
Workshop4test - passed
Workshop5test - passed
Workshop6test - passed
Workshop7test - passed
Workshop8test - passed
Workshop9_my_shapes - passed
Workshop9test - passed
All PyRosetta Tests passed!
Deleting PyRosetta tests output...
cd /Volumes/scratch/w/rosetta/commits/rosetta/source/build/PyRosetta/macOS-12.7-arm64-arm-64bit/clang-14.0.0/python-3.9/release.serialization.thread/build && /Volumes/scratch/w/T/commits-20640.849454.m1.clang.cxx11thread.serialization.python39.release.PyRosetta.conda.Release.0/.conda-python-3.9/bin/python3.9 self-test.py --delete-tests-output
self-test.py::__main__, started at 2025-01-22 22:30:34.272134...
Preparing to run:
demo/D010_Pose_structure.py
demo/D020_Pose_scoring.py
demo/D030_Fold_tree.py
demo/D040_Movemap.py
demo/D050_Packer_task.py
demo/D060_Folding.py
demo/D070_Refinement.py
demo/D080_Loop_modeling.py
demo/D090_Ala_scan.py
demo/D100_Docking.py
demo/D110_DNA_interface.py
demo/D120_Ligand_interface.py
test/C001_Carbohydrates_Demo01.py
test/T000_Imports.py
test/T005_Bindings.py
test/T006_Options.py
test/T007_TracerIO.py
test/T008_Serialization.py
test/T009_Exceptions.py
test/T010_LoadPDB.py
test/T020_Pose_Bindings.py
test/T040_Types.py
test/T100_basic.py
test/T110_numeric.py
test/T120_core.RotamerSets.py
test/T121_core.ResidueSelector.py
test/T150_PyMOL_Integration.py
test/T150_core.misc.lkball.py
test/T190_Bindings_Utility.py
test/T200_Scoring.py
test/T201_Scoring_pre_talaris.py
test/T220_AtomAtomPairEnergies.py
test/T250_Constraints.py
test/T300_PyJobDistributor.py
test/T400_Refinement.py
test/T500_Packing.py
test/T600_Docking.py
test/T650_LoopsKIC.py
test/T660_LoopBuilding.py
test/T700_FoldTree.py
test/T800_ClassicRelax.py
test/T850_SubClassing.py
test/T860_SubClassing_EnergyMethods.py
test/T870_SubClassing_EnergyMethods2.py
test/T880_Other.py
test/T900_distributed.py
test/Workshop2test.py
test/Workshop3test.py
test/Workshop4test.py
test/Workshop5test.py
test/Workshop6test.py
test/Workshop7test.py
test/Workshop8test.py
test/Workshop9_my_shapes.py
test/Workshop9test.py
Removing old test dir .test.output/...
Running PyRosetta release test: Build and Unit tests passged! Now creating PyRosetta package...
Creating PyRosetta distribution package...
cd /Volumes/scratch/w/rosetta/commits/rosetta/source/src/python/PyRosetta && /Volumes/scratch/w/T/commits-20640.849454.m1.clang.cxx11thread.serialization.python39.release.PyRosetta.conda.Release.0/.conda-python-3.9/bin/python3.9 build.py -j4 --compiler clang --type Release --python-include-dir=/Volumes/scratch/w/T/commits-20640.849454.m1.clang.cxx11thread.serialization.python39.release.PyRosetta.conda.Release.0/.conda-python-3.9/include/python3.9 --python-lib=/Volumes/scratch/w/T/commits-20640.849454.m1.clang.cxx11thread.serialization.python39.release.PyRosetta.conda.Release.0/.conda-python-3.9/lib --multi-threaded --serialization --version '/Volumes/scratch/w/T/commits-20640.849454.m1.clang.cxx11thread.serialization.python39.release.PyRosetta.conda.Release.0/version.json' --no-strip-module --binder-config rosetta.distributed.config -sd --create-package /Volumes/scratch/w/T/commits-20640.849454.m1.clang.cxx11thread.serialization.python39.release.PyRosetta.conda.Release.0/PyRosetta4.conda.m1.cxx11thread.serialization.python39.Release
Creating PyRosetta in "Release" mode in: /Volumes/scratch/w/rosetta/commits/rosetta/source/build/PyRosetta/macOS-12.7-arm64-arm-64bit/clang-14.0.0/python-3.9/release.serialization.thread
Binder config: ['rosetta.config', 'rosetta.distributed.config']
Option --skip-generation-phase is supplied, skipping generation phase...
Option --skip-building-phase is supplied, skipping building phase...
Creating Python package at: /Volumes/scratch/w/T/commits-20640.849454.m1.clang.cxx11thread.serialization.python39.release.PyRosetta.conda.Release.0/PyRosetta4.conda.m1.cxx11thread.serialization.python39.Release...
Traceback (most recent call last):
File "/Volumes/scratch/w/rosetta/commits/rosetta/tests/benchmark/./benchmark.py", line 422, in <module>
if __name__ == "__main__": main(sys.argv)
File "/Volumes/scratch/w/rosetta/commits/rosetta/tests/benchmark/./benchmark.py", line 419, in main
run_test(setup)
File "/Volumes/scratch/w/rosetta/commits/rosetta/tests/benchmark/./benchmark.py", line 335, in run_test
res = test_suite.run(test=test_name, repository_root=repository_root, working_dir=working_dir, platform=dict(setup.platform), config=setup.config, hpc_driver=hpc_driver, verbose=True, debug=setup.debug)
File "tests/release.py", line 1294, in run
elif test =='PyRosetta.conda.Release': return pyrosetta_conda_release('Release', repository_root, working_dir, platform, config=config, hpc_driver=hpc_driver, verbose=verbose, debug=debug)
File "tests/release.py", line 1269, in pyrosetta_conda_release
def pyrosetta_conda_release(*args, **kwargs): return native_libc_pyrosetta_conda_release(*args, **kwargs)
File "tests/release.py", line 798, in native_libc_pyrosetta_conda_release
conda_package_dir = re_module.search(r"/([^/]*)/pyrosetta-.*\.conda", conda_package_output, re_module.MULTILINE).group(1)
AttributeError: 'NoneType' object has no attribute 'group'
ERROR: Benchmark back-end script terminates abnormally, marking test state as 'script failed'!