Test №848490

Test: linux.clang.integration.release_debug_no_symbols 「view this page in B3 βῆτα server」
Branch: rosetta:commits 「revision: №20636」
Test files: 「file-system-view」「file-list-view」
Daemon: hojo-4 Started at: 2025-01-17 18:45:27 Run time: 1:33:04 State: failed

Failed sub-tests (click for more details):
code_template_tests_src output_schema replica_docking

Test Log

Compiling: find bin -type l ! -name ".*" -exec rm {} \; ; /home/benchmark/prefix/hojo-4/linux/python-3.9.gcc/99a1a29fd465f86265a7c5b92d75dbcd/bin/python3.9 ./scons.py bin mode=release_debug_no_symbols cxx=clang extras= -j24 Running: unset __PYVENV_LAUNCHER__ && . /home/benchmark/prefix/hojo-4/linux/python_virtual_environments/python-3.9/df3055f6f81b525b8050290cef45e968/bin/activate && cd /home/benchmark/rosetta/tests/integration && python ./integration.py --mode=release_debug_no_symbols --compiler=clang --extras= --timeout=3600 -j24 --skip-comparison --additional_flags "-in:path:database_cache_dir /home/benchmark/rosetta/.database-binaries/linuxclangrelease_debug_no_symbols" Running integration script... Command line: unset __PYVENV_LAUNCHER__ && . /home/benchmark/prefix/hojo-4/linux/python_virtual_environments/python-3.9/df3055f6f81b525b8050290cef45e968/bin/activate && cd /home/benchmark/rosetta/tests/integration && python ./integration.py --mode=release_debug_no_symbols --compiler=clang --extras= --timeout=3600 -j24 --skip-comparison --additional_flags "-in:path:database_cache_dir /home/benchmark/rosetta/.database-binaries/linuxclangrelease_debug_no_symbols" Using Rosetta source dir at: /home/benchmark/rosetta/source Using Rosetta database dir at:/home/benchmark/rosetta/database Current Versions Tested: MAIN: 65d53cb5c48ce3098a0fa59fab7e4ae71d327e6b TOOLS: b0af2521cbed1f2bde597ef1c5406efa376a6f85 DEMOS: 48c9239db73b9a8c828954d9215c983b9f144c92 Python: `/home/benchmark/prefix/hojo-4/linux/python_virtual_environments/python-3.9/df3055f6f81b525b8050290cef45e968/bin/python` Outdir: new No correct command.sh file found for test_rosetta_thread_manager_basic_API. Skipping. No correct command.sh file found for test_rosetta_thread_manager_advanced_API. Skipping. No correct command.sh file found for proteinMPNN_model_perplexity. Skipping. No correct command.sh file found for multithreaded_packrotamersmover. Skipping. No correct command.sh file found for multithreaded_interaction_graph_accuracy_symm. Skipping. No correct command.sh file found for multithreaded_interaction_graph_accuracy. Skipping. No correct command.sh file found for multithreaded_fixbb. Skipping. No correct command.sh file found for multithreaded_fastdesign. Skipping. No correct command.sh file found for bcl_fragment_mutate. Skipping. No correct command.sh file found for antibody_cc. Skipping. No correct command.sh file found for replica_docking. Skipping. No correct command.sh file found for abinitio_with_trRosetta. Skipping. No correct command.sh file found for trRosetta_test_predict_ubiquitin_init_by_bins. Skipping. No correct command.sh file found for trRosettaProtocolMover. Skipping. No correct command.sh file found for trRosetta_test_predict. Skipping. Running Test mp_f19_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_f19_relax/command.sh No correct command.sh file found for smart_annealer. Skipping. No correct command.sh file found for PTMPrediction. Skipping. No correct command.sh file found for mpi_simple_cycpep_predict_computing_pnear_to_all. Skipping. No correct command.sh file found for recon_design_mpi. Skipping. No correct command.sh file found for mpi_simple_cycpep_predict_4level. Skipping. No correct command.sh file found for mpi_simple_cycpep_predict. Skipping. No correct command.sh file found for features_pdb_mpi. Skipping. Running Test app_exception_handling ulimit -t 7200 && bash /home/benchmark/rosetta/tests/integration/new/app_exception_handling/command.sh Running Test dgdp_script ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dgdp_script/command.sh Running Test simple_cycpep_predict_square_pyramidal_metal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_square_pyramidal_metal/command.sh Running Test auto-drrafter_setup_run_R2 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/auto-drrafter_setup_run_R2/command.sh Running Test dgdp_aio ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dgdp_aio/command.sh Running Test database_md5 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/database_md5/command.sh Running Test ddG_of_mutation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ddG_of_mutation/command.sh Running Test antibody_H3 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_H3/command.sh Running Test cyclization ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cyclization/command.sh Running Test fast_relax_scripts ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fast_relax_scripts/command.sh Running Test ccd_ends_graft_mover_rs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ccd_ends_graft_mover_rs/command.sh Running Test glycopeptidedocking_diglyco_long ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycopeptidedocking_diglyco_long/command.sh Running Test bundlegridsampler_composition_energy ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_composition_energy/command.sh Running Test add_helix_sequence_constraints ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/add_helix_sequence_constraints/command.sh Running Test glycan_tree_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycan_tree_relax/command.sh Running Test crosslinkermover_octahedral ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_octahedral/command.sh Running Test ligand_dock_ensemble ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_dock_ensemble/command.sh Running Test nonideal_rtmin ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/nonideal_rtmin/command.sh Running Test ga_ligand_dock ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ga_ligand_dock/command.sh Running Test ddG_sym ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ddG_sym/command.sh Running Test buried_unsat_voids_hbnet_design_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/buried_unsat_voids_hbnet_design_symm/command.sh Running Test add_helix_sequence_constraints_advanced_setup ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/add_helix_sequence_constraints_advanced_setup/command.sh Running Test auto-drrafter_setup_run_R1 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/auto-drrafter_setup_run_R1/command.sh Finished app_exception_handling in 108 seconds [~ 47 test (5.845771144278607%) started, 757 in queue, 24 running] Running Test crosslinkermover_tma ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_tma/command.sh Finished database_md5 in 124 seconds [~ 48 test (5.970149253731344%) started, 756 in queue, 24 running] Running Test ppi_v3_suiteC ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteC/command.sh Finished buried_unsat_voids_hbnet_design_symm in 273 seconds [~ 49 test (6.0945273631840795%) started, 755 in queue, 24 running] Running Test peptiderive ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/peptiderive/command.sh Finished ddG_sym in 337 seconds [~ 50 test (6.218905472636816%) started, 754 in queue, 24 running] Running Test drrafter_run ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_run/command.sh Finished auto-drrafter_setup_run_R1 in 366 seconds [~ 51 test (6.343283582089552%) started, 753 in queue, 24 running] Running Test rna_denovo_lariat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_lariat/command.sh Finished fast_relax_scripts in 389 seconds [~ 52 test (6.467661691542289%) started, 752 in queue, 24 running] Running Test voids_penalty_energy_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/voids_penalty_energy_design/command.sh Finished ga_ligand_dock in 393 seconds [~ 53 test (6.592039800995025%) started, 751 in queue, 24 running] Running Test swm_dna_bridge ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_dna_bridge/command.sh Finished nonideal_rtmin in 405 seconds [~ 54 test (6.7164179104477615%) started, 750 in queue, 24 running] Running Test flexpepdock ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/flexpepdock/command.sh Finished add_helix_sequence_constraints_advanced_setup in 417 seconds [~ 55 test (6.840796019900497%) started, 749 in queue, 24 running] Running Test swm_rna_srl_triplet ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_srl_triplet/command.sh Finished auto-drrafter_setup_run_R2 in 434 seconds [~ 56 test (6.965174129353234%) started, 748 in queue, 24 running] Running Test ga_ligand_dock_macrocycle ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ga_ligand_dock_macrocycle/command.sh Finished bundlegridsampler_composition_energy in 453 seconds [~ 57 test (7.08955223880597%) started, 747 in queue, 24 running] Running Test validate_database ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/validate_database/command.sh Finished ccd_ends_graft_mover_rs in 457 seconds [~ 58 test (7.213930348258707%) started, 746 in queue, 24 running] Running Test swa_protein_CCDclose ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_CCDclose/command.sh Finished crosslinkermover_octahedral in 474 seconds [~ 59 test (7.338308457711443%) started, 745 in queue, 24 running] Running Test ddG_ensemble ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ddG_ensemble/command.sh Finished crosslinkermover_tma in 390 seconds [~ 60 test (7.462686567164179%) started, 744 in queue, 24 running] Running Test coupled_moves ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/coupled_moves/command.sh Finished cyclization in 515 seconds [~ 61 test (7.587064676616915%) started, 743 in queue, 24 running] Running Test job_definition_script_vars ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/job_definition_script_vars/command.sh Finished ppi_v3_suiteC in 400 seconds [~ 62 test (7.711442786069652%) started, 742 in queue, 24 running] Running Test swm_rna_base_pair_constraints ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_base_pair_constraints/command.sh Finished add_helix_sequence_constraints in 526 seconds [~ 63 test (7.835820895522388%) started, 741 in queue, 24 running] Running Test rnp_ddg_relax_command_2 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_relax_command_2/command.sh Finished dgdp_aio in 547 seconds [~ 64 test (7.960199004975125%) started, 740 in queue, 24 running] Running Test test1_benchmark ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/test1_benchmark/command.sh Finished ddG_of_mutation in 561 seconds [~ 65 test (8.08457711442786%) started, 739 in queue, 24 running] Running Test ppi_v3_suiteF ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteF/command.sh Finished drrafter_run in 237 seconds [~ 66 test (8.208955223880597%) started, 738 in queue, 24 running] Running Test glycan_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycan_relax/command.sh Finished glycan_tree_relax in 599 seconds [~ 67 test (8.333333333333334%) started, 737 in queue, 24 running] Running Test docking_ensemble_prepack ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_ensemble_prepack/command.sh Finished flexpepdock in 211 seconds [~ 68 test (8.457711442786069%) started, 736 in queue, 24 running] Running Test simple_cycpep_predict_trigonal_pyramidal_metal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_trigonal_pyramidal_metal/command.sh Finished glycopeptidedocking_diglyco_long in 641 seconds [~ 69 test (8.582089552238806%) started, 735 in queue, 24 running] No correct command.sh file found for esm_model_perplexity. Skipping. Running Test auto-drrafter_setup_run_R3 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/auto-drrafter_setup_run_R3/command.sh Finished dgdp_script in 651 seconds [~ 71 test (8.83084577114428%) started, 733 in queue, 24 running] Running Test antibody_designer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_designer/command.sh Finished antibody_H3 in 664 seconds [~ 72 test (8.955223880597014%) started, 732 in queue, 24 running] Running Test rna_denovo_dna_bridge ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_dna_bridge/command.sh Finished job_definition_script_vars in 220 seconds [~ 73 test (9.07960199004975%) started, 731 in queue, 24 running] Running Test count_cycpep_sequences ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/count_cycpep_sequences/command.sh Finished ga_ligand_dock_macrocycle in 304 seconds [~ 74 test (9.203980099502488%) started, 730 in queue, 24 running] Running Test rnp_ddg_calc_mut ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_calc_mut/command.sh Finished rna_denovo_lariat in 380 seconds [~ 75 test (9.328358208955224%) started, 729 in queue, 24 running] Running Test helical_bundle_predict_psipred_with_helix_globals ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_psipred_with_helix_globals/command.sh Finished voids_penalty_energy_design in 369 seconds [~ 76 test (9.45273631840796%) started, 728 in queue, 24 running] Running Test simple_metrics_per_residue ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metrics_per_residue/command.sh Finished swm_dna_bridge in 371 seconds [~ 77 test (9.577114427860696%) started, 727 in queue, 24 running] Running Test composition_energy_layers ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/composition_energy_layers/command.sh Finished swa_protein_CCDclose in 324 seconds [~ 78 test (9.701492537313433%) started, 726 in queue, 24 running] Running Test glycopeptidedocking ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycopeptidedocking/command.sh Finished peptiderive in 544 seconds [~ 79 test (9.82587064676617%) started, 725 in queue, 24 running] Running Test helical_bundle_predict_psipred ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_psipred/command.sh Finished ddG_ensemble in 344 seconds [~ 80 test (9.950248756218905%) started, 724 in queue, 24 running] Running Test SnugDock ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/SnugDock/command.sh Finished validate_database in 366 seconds [~ 81 test (10.074626865671641%) started, 723 in queue, 24 running] Running Test swm_dna_loop ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_dna_loop/command.sh Finished mp_f19_relax in 836 seconds [~ 82 test (10.199004975124378%) started, 722 in queue, 24 running] Running Test rosetta_scripts_loops ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosetta_scripts_loops/command.sh Finished auto-drrafter_setup_run_R3 in 205 seconds [~ 83 test (10.323383084577115%) started, 721 in queue, 24 running] Running Test antibody_designer_xml ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_designer_xml/command.sh Finished swm_rna_srl_triplet in 432 seconds [~ 84 test (10.447761194029852%) started, 720 in queue, 24 running] Running Test hbnet_asymm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbnet_asymm/command.sh Finished simple_cycpep_predict_trigonal_pyramidal_metal in 235 seconds [~ 85 test (10.572139303482587%) started, 719 in queue, 24 running] Running Test voids_penalty_energy_design_symmetry ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/voids_penalty_energy_design_symmetry/command.sh Finished test1_benchmark in 307 seconds [~ 86 test (10.696517412935323%) started, 718 in queue, 24 running] Running Test hydrate_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hydrate_relax/command.sh Finished count_cycpep_sequences in 136 seconds [~ 87 test (10.82089552238806%) started, 717 in queue, 24 running] Running Test hbnet_energy ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbnet_energy/command.sh Finished ppi_v3_suiteF in 321 seconds [~ 88 test (10.945273631840797%) started, 716 in queue, 24 running] Running Test docking_ensemble ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_ensemble/command.sh Finished antibody_designer in 252 seconds [~ 89 test (11.069651741293532%) started, 715 in queue, 24 running] Running Test crosslinkermover_square_pyramidal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_square_pyramidal/command.sh Finished swm_rna_base_pair_constraints in 387 seconds [~ 90 test (11.194029850746269%) started, 714 in queue, 24 running] Running Test bundlegridsampler_copy_pitch ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_copy_pitch/command.sh Finished ligand_dock_ensemble in 920 seconds [~ 91 test (11.318407960199005%) started, 713 in queue, 24 running] Running Test dna_interface_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dna_interface_design/command.sh Finished docking_ensemble_prepack in 323 seconds [~ 92 test (11.442786069651742%) started, 712 in queue, 24 running] Running Test crosslinkermover_1_4_bbmb_s2_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_1_4_bbmb_s2_symm/command.sh Finished simple_cycpep_predict_square_pyramidal_metal in 937 seconds [~ 93 test (11.567164179104477%) started, 711 in queue, 24 running] Running Test crosslinkermover_tetrahedral_metal_d2_symmetry ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal_d2_symmetry/command.sh Finished coupled_moves in 453 seconds [~ 94 test (11.691542288557214%) started, 710 in queue, 24 running] Running Test vip ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/vip/command.sh Finished hbnet_asymm in 144 seconds [~ 95 test (11.81592039800995%) started, 709 in queue, 24 running] Running Test swa_rna_gagu_09_sample_virtual_ribose ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_09_sample_virtual_ribose/command.sh Finished helical_bundle_predict_psipred_with_helix_globals in 250 seconds [~ 96 test (11.940298507462687%) started, 708 in queue, 24 running] Running Test fiber_diffraction_fad ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fiber_diffraction_fad/command.sh Finished simple_metrics_per_residue in 246 seconds [~ 97 test (12.064676616915422%) started, 707 in queue, 24 running] Running Test supercharge ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/supercharge/command.sh Finished hydrate_relax in 181 seconds [~ 98 test (12.189054726368159%) started, 706 in queue, 24 running] Running Test molfile_to_params_polymer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/molfile_to_params_polymer/command.sh Finished rna_denovo_dna_bridge in 381 seconds [~ 99 test (12.313432835820896%) started, 705 in queue, 24 running] Running Test PolarDesign2019 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/PolarDesign2019/command.sh Finished composition_energy_layers in 305 seconds [~ 100 test (12.437810945273633%) started, 704 in queue, 24 running] Running Test simple_glycosylation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_glycosylation/command.sh Finished rnp_ddg_relax_command_2 in 547 seconds [~ 101 test (12.562189054726367%) started, 703 in queue, 24 running] Running Test jd2test_mmCIFin_PDBout ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jd2test_mmCIFin_PDBout/command.sh Finished helical_bundle_predict_psipred in 274 seconds [~ 102 test (12.686567164179104%) started, 702 in queue, 24 running] Running Test jd2test_mmCIFIO ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jd2test_mmCIFIO/command.sh Finished voids_penalty_energy_design_symmetry in 241 seconds [~ 103 test (12.810945273631841%) started, 701 in queue, 24 running] Running Test helical_bundle_predict ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict/command.sh Finished antibody_designer_xml in 253 seconds [~ 104 test (12.935323383084578%) started, 700 in queue, 24 running] Running Test crosslinkermover_square_planar ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_square_planar/command.sh Finished docking_ensemble in 222 seconds [~ 105 test (13.059701492537313%) started, 699 in queue, 24 running] Running Test bundlegridsampler_composition_energy_fract_range ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_composition_energy_fract_range/command.sh Finished swm_dna_loop in 292 seconds [~ 106 test (13.18407960199005%) started, 698 in queue, 24 running] Running Test LoopAnalyzer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/LoopAnalyzer/command.sh Finished dna_interface_design in 199 seconds [~ 107 test (13.308457711442786%) started, 697 in queue, 24 running] Running Test relax_w_allatom_cst ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/relax_w_allatom_cst/command.sh Finished glycan_relax in 559 seconds [~ 108 test (13.432835820895523%) started, 696 in queue, 24 running] Running Test helical_bundle_predict_skipping_residues ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_skipping_residues/command.sh Finished molfile_to_params_polymer in 102 seconds [~ 109 test (13.557213930348258%) started, 695 in queue, 24 running] Running Test hbnet_energy_rosettascripts_linear ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbnet_energy_rosettascripts_linear/command.sh Finished crosslinkermover_1_4_bbmb_s2_symm in 216 seconds [~ 110 test (13.681592039800995%) started, 694 in queue, 24 running] Running Test d_workflow ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/d_workflow/command.sh Finished glycopeptidedocking in 363 seconds [~ 111 test (13.805970149253731%) started, 693 in queue, 24 running] Running Test control_flow_rs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/control_flow_rs/command.sh Finished crosslinkermover_square_pyramidal in 251 seconds [~ 112 test (13.930348258706468%) started, 692 in queue, 24 running] Running Test simple_metrics ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metrics/command.sh Finished rosetta_scripts_loops in 324 seconds [~ 113 test (14.054726368159203%) started, 691 in queue, 24 running] Running Test crosslinkermover_tma_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_tma_symm/command.sh Finished crosslinkermover_tetrahedral_metal_d2_symmetry in 228 seconds [~ 114 test (14.17910447761194%) started, 690 in queue, 24 running] Running Test rna_denovo_base_pair_constraints ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_base_pair_constraints/command.sh Finished hbnet_energy in 294 seconds [~ 115 test (14.303482587064677%) started, 689 in queue, 24 running] Running Test hotspot_hashing ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hotspot_hashing/command.sh Finished swa_rna_gagu_09_sample_virtual_ribose in 191 seconds [~ 116 test (14.427860696517413%) started, 688 in queue, 24 running] Running Test helical_bundle_predict_sequence ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_sequence/command.sh Finished fiber_diffraction_fad in 194 seconds [~ 117 test (14.552238805970148%) started, 687 in queue, 24 running] Running Test design_glycans ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/design_glycans/command.sh Finished bundlegridsampler_copy_pitch in 283 seconds [~ 118 test (14.676616915422885%) started, 686 in queue, 24 running] Running Test ligand_water_docking ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_water_docking/command.sh Finished vip in 250 seconds [~ 119 test (14.800995024875622%) started, 685 in queue, 24 running] Running Test fiber_diffraction ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fiber_diffraction/command.sh Finished rnp_ddg_calc_mut in 490 seconds [~ 120 test (14.925373134328359%) started, 684 in queue, 24 running] Running Test beta_strand_homodimer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/beta_strand_homodimer/command.sh Finished supercharge in 243 seconds [~ 121 test (15.049751243781095%) started, 683 in queue, 24 running] Running Test polyaramid_test_trivial ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/polyaramid_test_trivial/command.sh Finished SnugDock in 435 seconds [~ 122 test (15.17412935323383%) started, 682 in queue, 24 running] Running Test crosslinkermover_1_4_bbmb_asymm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_1_4_bbmb_asymm/command.sh Finished LoopAnalyzer in 165 seconds [~ 123 test (15.298507462686567%) started, 681 in queue, 24 running] Running Test mr_protocols ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mr_protocols/command.sh Finished helical_bundle_predict in 214 seconds [~ 124 test (15.422885572139304%) started, 680 in queue, 24 running] Running Test simple_cycpep_predict_cartesian ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_cartesian/command.sh Finished control_flow_rs in 165 seconds [~ 125 test (15.54726368159204%) started, 679 in queue, 24 running] Running Test AlterSpecDisruption ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/AlterSpecDisruption/command.sh Finished PolarDesign2019 in 269 seconds [~ 126 test (15.671641791044776%) started, 678 in queue, 24 running] Running Test mp_domain_assembly_FtsQ ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_domain_assembly_FtsQ/command.sh Finished simple_metrics in 175 seconds [~ 127 test (15.796019900497512%) started, 677 in queue, 24 running] Running Test glycomutagenesis ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycomutagenesis/command.sh Finished bundlegridsampler_composition_energy_fract_range in 227 seconds [~ 128 test (15.92039800995025%) started, 676 in queue, 24 running] Running Test backrub ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backrub/command.sh Finished d_workflow in 195 seconds [~ 129 test (16.044776119402986%) started, 675 in queue, 24 running] Running Test autoNOE_rosetta ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/autoNOE_rosetta/command.sh Finished relax_w_allatom_cst in 214 seconds [~ 130 test (16.16915422885572%) started, 674 in queue, 24 running] Running Test antibody_H3_camelid ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_H3_camelid/command.sh Finished jd2test_mmCIFin_PDBout in 270 seconds [~ 131 test (16.29353233830846%) started, 673 in queue, 24 running] Running Test simple_cycpep_predict ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict/command.sh Finished crosslinkermover_tma_symm in 196 seconds [~ 132 test (16.417910447761194%) started, 672 in queue, 24 running] Running Test pertmin ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pertmin/command.sh Finished crosslinkermover_square_planar in 259 seconds [~ 133 test (16.54228855721393%) started, 671 in queue, 24 running] Running Test crosslinkermover_tetrahedral_metal_c2_symmetry ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal_c2_symmetry/command.sh Finished jd2test_mmCIFIO in 272 seconds [~ 134 test (16.666666666666668%) started, 670 in queue, 24 running] Running Test rs_loophash ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rs_loophash/command.sh Finished ligand_water_docking in 186 seconds [~ 135 test (16.791044776119403%) started, 669 in queue, 24 running] Running Test rnp_ddg_calc_wt ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_calc_wt/command.sh Finished helical_bundle_predict_skipping_residues in 249 seconds [~ 136 test (16.915422885572138%) started, 668 in queue, 24 running] Running Test hybridization ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hybridization/command.sh Finished hbnet_energy_rosettascripts_linear in 264 seconds [~ 137 test (17.039800995024876%) started, 667 in queue, 24 running] Running Test hts_io ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hts_io/command.sh Finished helical_bundle_predict_sequence in 230 seconds [~ 138 test (17.16417910447761%) started, 666 in queue, 24 running] Running Test swa_protein_prepack ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_prepack/command.sh Finished simple_glycosylation in 364 seconds [~ 139 test (17.28855721393035%) started, 665 in queue, 24 running] Running Test swa_protein_loop_sampler ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_loop_sampler/command.sh Finished design_glycans in 256 seconds [~ 140 test (17.412935323383085%) started, 664 in queue, 24 running] Running Test crosslinkermover_square_planar_d2_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_square_planar_d2_symm/command.sh Finished beta_strand_homodimer in 224 seconds [~ 141 test (17.53731343283582%) started, 663 in queue, 24 running] Running Test simple_cycpep_predict_anglelength ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_anglelength/command.sh Finished mr_protocols in 184 seconds [~ 142 test (17.66169154228856%) started, 662 in queue, 24 running] Running Test rosetta_scripts_jd3 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosetta_scripts_jd3/command.sh Finished polyaramid_test_trivial in 214 seconds [~ 143 test (17.786069651741293%) started, 661 in queue, 24 running] Running Test ligand_database_io ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_database_io/command.sh Finished hotspot_hashing in 303 seconds [~ 144 test (17.91044776119403%) started, 660 in queue, 24 running] Running Test simple_cycpep_predict_setting ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_setting/command.sh Finished simple_cycpep_predict_cartesian in 163 seconds [~ 145 test (18.034825870646767%) started, 659 in queue, 24 running] Running Test netcharge_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/netcharge_design/command.sh Finished crosslinkermover_1_4_bbmb_asymm in 218 seconds [~ 146 test (18.1592039800995%) started, 658 in queue, 24 running] Running Test fast_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fast_relax/command.sh Finished autoNOE_rosetta in 152 seconds [~ 147 test (18.28358208955224%) started, 657 in queue, 24 running] Running Test pmut_scan ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pmut_scan/command.sh Finished backrub in 163 seconds [~ 148 test (18.407960199004975%) started, 656 in queue, 24 running] Running Test hbnet ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbnet/command.sh Finished AlterSpecDisruption in 188 seconds [~ 149 test (18.53233830845771%) started, 655 in queue, 24 running] Running Test simple_cycpep_predict_tetrahedral_metal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_tetrahedral_metal/command.sh Finished simple_cycpep_predict in 157 seconds [~ 150 test (18.65671641791045%) started, 654 in queue, 24 running] Running Test simple_cycpep_predict_angle ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_angle/command.sh Finished mp_domain_assembly_FtsQ in 198 seconds [~ 151 test (18.781094527363184%) started, 653 in queue, 24 running] Running Test remodel_disulfides_rosettascripts ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/remodel_disulfides_rosettascripts/command.sh Finished hts_io in 114 seconds [~ 152 test (18.90547263681592%) started, 652 in queue, 24 running] Running Test mirror_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mirror_symm/command.sh Finished hybridization in 150 seconds [~ 153 test (19.029850746268657%) started, 651 in queue, 24 running] Running Test swa_rna_erraser ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_erraser/command.sh Finished rs_loophash in 169 seconds [~ 154 test (19.154228855721392%) started, 650 in queue, 24 running] Running Test rna_denovo_fragment_homology_exclusion ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_fragment_homology_exclusion/command.sh Finished crosslinkermover_tetrahedral_metal_c2_symmetry in 180 seconds [~ 155 test (19.27860696517413%) started, 649 in queue, 24 running] Running Test perturb_helical_bundle_copying_pitch ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/perturb_helical_bundle_copying_pitch/command.sh Finished antibody_H3_camelid in 208 seconds [~ 156 test (19.402985074626866%) started, 648 in queue, 24 running] Finished simple_cycpep_predict_setting in 73 seconds [~ 156 test (19.402985074626866%) started, 648 in queue, 23 running] Running Test batch_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/batch_relax/command.sh Running Test swm_l_rna ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_l_rna/command.sh Finished glycomutagenesis in 215 seconds [~ 158 test (19.65174129353234%) started, 646 in queue, 24 running] Running Test rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation/command.sh Finished swa_protein_loop_sampler in 159 seconds [~ 159 test (19.776119402985074%) started, 645 in queue, 24 running] Running Test seed_ensemble_JD2_JI ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/seed_ensemble_JD2_JI/command.sh Finished crosslinkermover_square_planar_d2_symm in 155 seconds [~ 160 test (19.90049751243781%) started, 644 in queue, 24 running] Running Test symm_disulfidize ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symm_disulfidize/command.sh Finished pertmin in 253 seconds [~ 161 test (20.024875621890548%) started, 643 in queue, 24 running] Running Test simple_cycpep_predict_trigonal_planar_metal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_trigonal_planar_metal/command.sh Finished swa_protein_prepack in 197 seconds [~ 162 test (20.149253731343283%) started, 642 in queue, 24 running] Running Test ligand_dock_script ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_dock_script/command.sh Finished rna_denovo_base_pair_constraints in 451 seconds [~ 163 test (20.27363184079602%) started, 641 in queue, 24 running] Running Test simple_cycpep_predict_tbmb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_tbmb/command.sh Finished hbnet in 125 seconds [~ 164 test (20.398009950248756%) started, 640 in queue, 24 running] Running Test mp_dock_ensemble ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_dock_ensemble/command.sh Finished simple_cycpep_predict_angle in 126 seconds [~ 165 test (20.52238805970149%) started, 639 in queue, 24 running] Running Test farnesyl ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/farnesyl/command.sh Finished fast_relax in 159 seconds [~ 166 test (20.64676616915423%) started, 638 in queue, 24 running] Running Test range_relax_w_cst ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/range_relax_w_cst/command.sh Finished simple_cycpep_predict_tetrahedral_metal in 146 seconds [~ 167 test (20.771144278606965%) started, 637 in queue, 24 running] Running Test motif_dna_packer_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/motif_dna_packer_design/command.sh Finished swa_rna_erraser in 113 seconds [~ 168 test (20.895522388059703%) started, 636 in queue, 24 running] Running Test crosslinkermover_octahedral_s2_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_octahedral_s2_symm/command.sh Finished rna_denovo_fragment_homology_exclusion in 115 seconds [~ 169 test (21.019900497512438%) started, 635 in queue, 24 running] Running Test KIC_with_fragments ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/KIC_with_fragments/command.sh Finished netcharge_design in 181 seconds [~ 170 test (21.144278606965173%) started, 634 in queue, 24 running] Running Test test_degreaser ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/test_degreaser/command.sh Finished pmut_scan in 165 seconds [~ 171 test (21.26865671641791%) started, 633 in queue, 24 running] Running Test repeat_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/repeat_relax/command.sh Finished simple_cycpep_predict_anglelength in 208 seconds [~ 172 test (21.393034825870647%) started, 632 in queue, 24 running] Running Test remodel_helical_repeat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/remodel_helical_repeat/command.sh Finished rosetta_scripts_jd3 in 208 seconds [~ 173 test (21.51741293532338%) started, 631 in queue, 24 running] Running Test next_generation_KIC ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/next_generation_KIC/command.sh Finished perturb_helical_bundle_copying_pitch in 148 seconds [~ 174 test (21.64179104477612%) started, 630 in queue, 24 running] Running Test splice_out_H3_longer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_H3_longer/command.sh Finished ligand_database_io in 226 seconds [~ 175 test (21.766169154228855%) started, 629 in queue, 24 running] Running Test simple_cycpep_predict_tma ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_tma/command.sh Finished swm_l_rna in 151 seconds [~ 176 test (21.890547263681594%) started, 628 in queue, 24 running] Running Test rna_puzzle12_P5P6P7_DMS ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_puzzle12_P5P6P7_DMS/command.sh Finished mirror_symm in 180 seconds [~ 177 test (22.01492537313433%) started, 627 in queue, 24 running] Running Test docking_local_refine ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_local_refine/command.sh Finished batch_relax in 156 seconds [~ 178 test (22.139303482587064%) started, 626 in queue, 24 running] Running Test rna_denovo_symm_hack ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_symm_hack/command.sh Finished remodel_disulfides_rosettascripts in 189 seconds [~ 179 test (22.263681592039802%) started, 625 in queue, 24 running] Running Test cycpep_rigid_body_permutation_mover ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cycpep_rigid_body_permutation_mover/command.sh Finished mp_dock_ensemble in 81 seconds [~ 180 test (22.388059701492537%) started, 624 in queue, 24 running] Running Test zinc_heterodimer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/zinc_heterodimer/command.sh Finished rnp_ddg_calc_wt in 323 seconds [~ 181 test (22.512437810945272%) started, 623 in queue, 24 running] Running Test sdf_reader ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sdf_reader/command.sh Finished symm_disulfidize in 138 seconds [~ 182 test (22.63681592039801%) started, 622 in queue, 24 running] Running Test crankshaft_flip ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crankshaft_flip/command.sh Finished seed_ensemble_JD2_JI in 152 seconds [~ 183 test (22.761194029850746%) started, 621 in queue, 24 running] Running Test AlignPDBInfoToSequences ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/AlignPDBInfoToSequences/command.sh Finished test_degreaser in 116 seconds [~ 184 test (22.885572139303484%) started, 620 in queue, 24 running] Running Test ga_ligand_dock_amino_acid ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ga_ligand_dock_amino_acid/command.sh Finished fiber_diffraction in 566 seconds [~ 185 test (23.00995024875622%) started, 619 in queue, 24 running] Running Test simple_cycpep_predict_octahedral_metal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_octahedral_metal/command.sh Finished next_generation_KIC in 99 seconds [~ 186 test (23.134328358208954%) started, 618 in queue, 24 running] Running Test mp_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_relax/command.sh Finished simple_cycpep_predict_tbmb in 157 seconds [~ 187 test (23.258706467661693%) started, 617 in queue, 24 running] Running Test ppi_v3_suiteB ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteB/command.sh Finished remodel_helical_repeat in 115 seconds [~ 188 test (23.383084577114428%) started, 616 in queue, 24 running] Running Test mp_find_interface ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_find_interface/command.sh Finished repeat_relax in 130 seconds [~ 189 test (23.507462686567163%) started, 615 in queue, 24 running] Running Test hotspot_graft ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hotspot_graft/command.sh Finished ligand_dock_script in 169 seconds [~ 190 test (23.6318407960199%) started, 614 in queue, 24 running] Finished range_relax_w_cst in 151 seconds [~ 190 test (23.6318407960199%) started, 614 in queue, 23 running] Running Test fixbb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fixbb/command.sh Running Test hbs_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbs_design/command.sh Finished crosslinkermover_octahedral_s2_symm in 136 seconds [~ 192 test (23.880597014925375%) started, 612 in queue, 24 running] Running Test disulfidize_beta_cys ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/disulfidize_beta_cys/command.sh Finished rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation in 250 seconds [~ 193 test (24.00497512437811%) started, 611 in queue, 24 running] Running Test buried_unsat_voids_hbnet_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/buried_unsat_voids_hbnet_design/command.sh Finished motif_dna_packer_design in 151 seconds [~ 194 test (24.129353233830845%) started, 610 in queue, 24 running] Running Test bundlegridsampler_epsilon ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_epsilon/command.sh Finished KIC_with_fragments in 151 seconds [~ 195 test (24.253731343283583%) started, 609 in queue, 24 running] Running Test TryDisulfPermutations ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/TryDisulfPermutations/command.sh Finished simple_cycpep_predict_trigonal_planar_metal in 200 seconds [~ 196 test (24.378109452736318%) started, 608 in queue, 24 running] Running Test swa_protein_combine_loops ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_combine_loops/command.sh Finished farnesyl in 184 seconds [~ 197 test (24.502487562189053%) started, 607 in queue, 24 running] Running Test mp_symdock ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_symdock/command.sh Finished splice_out_H3_longer in 126 seconds [~ 198 test (24.62686567164179%) started, 606 in queue, 24 running] Running Test enzdes ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enzdes/command.sh Finished simple_cycpep_predict_tma in 127 seconds [~ 199 test (24.751243781094526%) started, 605 in queue, 24 running] Running Test entropy_correction ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/entropy_correction/command.sh Finished sdf_reader in 119 seconds [~ 200 test (24.875621890547265%) started, 604 in queue, 24 running] Running Test bundlereporter_filter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlereporter_filter/command.sh Finished rna_denovo_symm_hack in 129 seconds [~ 201 test (25.0%) started, 603 in queue, 24 running] Running Test secondary_structure_output ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/secondary_structure_output/command.sh Finished cycpep_rigid_body_permutation_mover in 128 seconds [~ 202 test (25.124378109452735%) started, 602 in queue, 24 running] Running Test rna_denovo_new_FT_RNP_2prot_dens ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_new_FT_RNP_2prot_dens/command.sh Finished rna_puzzle12_P5P6P7_DMS in 144 seconds [~ 203 test (25.248756218905474%) started, 601 in queue, 24 running] Running Test mp_domain_assembly ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_domain_assembly/command.sh Finished crankshaft_flip in 97 seconds [~ 204 test (25.37313432835821%) started, 600 in queue, 24 running] Running Test generate_6Dloopclose ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/generate_6Dloopclose/command.sh Finished AlignPDBInfoToSequences in 100 seconds [~ 205 test (25.497512437810947%) started, 599 in queue, 24 running] Running Test explicit_membrane ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/explicit_membrane/command.sh Finished zinc_heterodimer in 149 seconds [~ 206 test (25.621890547263682%) started, 598 in queue, 24 running] Running Test docking_distance_constraints ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_distance_constraints/command.sh Finished docking_local_refine in 161 seconds [~ 207 test (25.746268656716417%) started, 597 in queue, 24 running] Running Test UBQ_E2_thioester_extra_bodies ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/UBQ_E2_thioester_extra_bodies/command.sh Finished ga_ligand_dock_amino_acid in 109 seconds [~ 208 test (25.870646766169155%) started, 596 in queue, 24 running] Running Test simple_cycpep_predict_bondangle_bondlength ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_bondangle_bondlength/command.sh Finished disulfidize_beta_cys in 95 seconds [~ 209 test (25.99502487562189%) started, 595 in queue, 24 running] Running Test mhc_epitope ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mhc_epitope/command.sh Finished hotspot_graft in 101 seconds [~ 210 test (26.119402985074625%) started, 594 in queue, 24 running] Running Test small_molecule_lattice_dock ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/small_molecule_lattice_dock/command.sh Finished TryDisulfPermutations in 85 seconds [~ 211 test (26.243781094527364%) started, 593 in queue, 24 running] Running Test rna_denovo_RNP_refine_native ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_RNP_refine_native/command.sh Finished rna_denovo_new_FT_RNP_2prot_dens in 56 seconds [~ 212 test (26.3681592039801%) started, 592 in queue, 24 running] Running Test oop_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/oop_design/command.sh Finished mp_relax in 122 seconds [~ 213 test (26.492537313432837%) started, 591 in queue, 24 running] Running Test make_symmdef_file ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_symmdef_file/command.sh Finished mp_find_interface in 118 seconds [~ 214 test (26.616915422885572%) started, 590 in queue, 24 running] Running Test crosslinkermover_1_4_bbmb_c2_symmetry ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_1_4_bbmb_c2_symmetry/command.sh Finished simple_cycpep_predict_octahedral_metal in 128 seconds [~ 215 test (26.741293532338307%) started, 589 in queue, 24 running] No correct command.sh file found for trRosetta. Skipping. Running Test SID_ERMS_prediction ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/SID_ERMS_prediction/command.sh Finished ppi_v3_suiteB in 133 seconds [~ 217 test (26.99004975124378%) started, 587 in queue, 24 running] Running Test rna_denovo_RNP_low_res ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_RNP_low_res/command.sh Finished bundlereporter_filter in 85 seconds [~ 218 test (27.114427860696516%) started, 586 in queue, 24 running] Running Test ppi_v3_suiteE ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteE/command.sh Finished buried_unsat_voids_hbnet_design in 115 seconds [~ 219 test (27.238805970149254%) started, 585 in queue, 24 running] Running Test ppi_v3_suiteA ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteA/command.sh Finished fixbb in 132 seconds [~ 220 test (27.36318407960199%) started, 584 in queue, 24 running] Running Test kinematic_looprelax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/kinematic_looprelax/command.sh Finished bundlegridsampler_epsilon in 121 seconds [~ 221 test (27.487562189054728%) started, 583 in queue, 24 running] Running Test hbnet_energy_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbnet_energy_symm/command.sh Finished hbs_design in 137 seconds [~ 222 test (27.611940298507463%) started, 582 in queue, 24 running] Running Test evolution ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/evolution/command.sh Finished secondary_structure_output in 94 seconds [~ 223 test (27.736318407960198%) started, 581 in queue, 24 running] Running Test UBQ_E2_thioester ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/UBQ_E2_thioester/command.sh Finished mp_symdock in 113 seconds [~ 224 test (27.860696517412936%) started, 580 in queue, 24 running] Running Test simple_cycpep_predict_terminal_disulfide_tails_2 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_tails_2/command.sh Finished swa_protein_combine_loops in 129 seconds [~ 225 test (27.98507462686567%) started, 579 in queue, 24 running] Finished generate_6Dloopclose in 101 seconds [~ 225 test (27.98507462686567%) started, 579 in queue, 23 running] Running Test homodimer_fnd_ref2015_memb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/homodimer_fnd_ref2015_memb/command.sh Running Test docking_site_constraints ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_site_constraints/command.sh Finished mhc_epitope in 65 seconds [~ 227 test (28.233830845771145%) started, 577 in queue, 24 running] Running Test cycpep_rdkit_metric ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cycpep_rdkit_metric/command.sh Finished enzdes in 129 seconds [~ 228 test (28.35820895522388%) started, 576 in queue, 24 running] Running Test cycpep_design_pipeline ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cycpep_design_pipeline/command.sh Finished entropy_correction in 130 seconds [~ 229 test (28.48258706467662%) started, 575 in queue, 24 running] Running Test rna_denovo_new_libs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_new_libs/command.sh Finished mp_domain_assembly in 116 seconds [~ 230 test (28.606965174129353%) started, 574 in queue, 24 running] Running Test ligand_dock_cholesterol ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_dock_cholesterol/command.sh Finished small_molecule_lattice_dock in 81 seconds [~ 231 test (28.73134328358209%) started, 573 in queue, 24 running] Running Test dock_glycans ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dock_glycans/command.sh Finished simple_cycpep_predict_bondangle_bondlength in 89 seconds [~ 232 test (28.855721393034827%) started, 572 in queue, 24 running] Running Test AnchoredDesign ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/AnchoredDesign/command.sh Finished docking_distance_constraints in 120 seconds [~ 233 test (28.980099502487562%) started, 571 in queue, 24 running] Running Test symm_rotamer_boltzmann ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symm_rotamer_boltzmann/command.sh Finished make_symmdef_file in 82 seconds [~ 234 test (29.104477611940297%) started, 570 in queue, 24 running] Running Test rna_farfar_block_stack ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_farfar_block_stack/command.sh Finished crosslinkermover_1_4_bbmb_c2_symmetry in 87 seconds [~ 235 test (29.228855721393035%) started, 569 in queue, 24 running] Running Test bundlegridsampler ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler/command.sh Finished SID_ERMS_prediction in 88 seconds [~ 236 test (29.35323383084577%) started, 568 in queue, 24 running] Running Test rna_denovo_new_FT_2in_dens ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_new_FT_2in_dens/command.sh Finished rna_denovo_RNP_refine_native in 116 seconds [~ 237 test (29.47761194029851%) started, 567 in queue, 24 running] Running Test mixed_monte_carlo ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mixed_monte_carlo/command.sh Finished explicit_membrane in 156 seconds [~ 238 test (29.601990049751244%) started, 566 in queue, 24 running] Running Test features_parallel ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features_parallel/command.sh Finished ppi_v3_suiteE in 94 seconds [~ 239 test (29.72636815920398%) started, 565 in queue, 24 running] Running Test splice_out_L3_longer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_L3_longer/command.sh Finished rna_denovo_RNP_low_res in 98 seconds [~ 240 test (29.850746268656717%) started, 564 in queue, 24 running] Running Test splice_out_H1_H2_longer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_H1_H2_longer/command.sh Finished oop_design in 120 seconds [~ 241 test (29.975124378109452%) started, 563 in queue, 24 running] Running Test simple_cycpep_predict_beta_thioether_lariat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_beta_thioether_lariat/command.sh Finished simple_cycpep_predict_terminal_disulfide_tails_2 in 85 seconds [~ 242 test (30.09950248756219%) started, 562 in queue, 24 running] Running Test rotamer_probability ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rotamer_probability/command.sh Finished kinematic_looprelax in 96 seconds [~ 243 test (30.223880597014926%) started, 561 in queue, 24 running] Running Test iphold ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/iphold/command.sh Finished homodimer_fnd_ref2015_memb in 80 seconds [~ 244 test (30.34825870646766%) started, 560 in queue, 24 running] Running Test interaction_graph_summary_metric ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/interaction_graph_summary_metric/command.sh Finished ppi_v3_suiteA in 111 seconds [~ 245 test (30.4726368159204%) started, 559 in queue, 24 running] Running Test genkic_sugars ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_sugars/command.sh Finished ligand_dock_cholesterol in 72 seconds [~ 246 test (30.597014925373134%) started, 558 in queue, 24 running] Running Test farfar_mrna ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/farfar_mrna/command.sh Finished hbnet_energy_symm in 107 seconds [~ 247 test (30.72139303482587%) started, 557 in queue, 24 running] Running Test backrub_pilot ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backrub_pilot/command.sh Finished UBQ_E2_thioester in 109 seconds [~ 248 test (30.845771144278608%) started, 556 in queue, 24 running] Running Test task_selector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/task_selector/command.sh Finished cycpep_rdkit_metric in 100 seconds [~ 249 test (30.970149253731343%) started, 555 in queue, 24 running] Running Test netcharge_design_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/netcharge_design_symm/command.sh Finished cycpep_design_pipeline in 100 seconds [~ 250 test (31.09452736318408%) started, 554 in queue, 24 running] Running Test swa_protein_build_at_Nterminus ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_build_at_Nterminus/command.sh Finished docking_site_constraints in 109 seconds [~ 251 test (31.218905472636816%) started, 553 in queue, 24 running] Running Test flexpepdock_abinitio ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/flexpepdock_abinitio/command.sh Finished evolution in 130 seconds [~ 252 test (31.34328358208955%) started, 552 in queue, 24 running] Running Test favor_native_residue ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/favor_native_residue/command.sh Finished bundlegridsampler in 74 seconds [~ 253 test (31.46766169154229%) started, 551 in queue, 24 running] Running Test constraints_metric ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/constraints_metric/command.sh Finished rna_farfar_block_stack in 88 seconds [~ 254 test (31.592039800995025%) started, 550 in queue, 24 running] Running Test bundlegridsampler_design_nstruct_mode ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_design_nstruct_mode/command.sh Finished UBQ_E2_thioester_extra_bodies in 205 seconds [~ 255 test (31.71641791044776%) started, 549 in queue, 24 running] Running Test swm_rna_move_inside_helix_by_jump ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_move_inside_helix_by_jump/command.sh Finished AnchoredDesign in 102 seconds [~ 256 test (31.8407960199005%) started, 548 in queue, 24 running] Running Test splice_in_4loops_shorter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_in_4loops_shorter/command.sh Finished symm_rotamer_boltzmann in 97 seconds [~ 257 test (31.965174129353233%) started, 547 in queue, 24 running] Running Test rs_flexbbmoves ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rs_flexbbmoves/command.sh Finished features_parallel in 75 seconds [~ 258 test (32.08955223880597%) started, 546 in queue, 24 running] Running Test ppi_v3_suiteG ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteG/command.sh Finished interaction_graph_summary_metric in 61 seconds [~ 259 test (32.21393034825871%) started, 545 in queue, 24 running] Running Test ppi_v3_suiteD ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteD/command.sh Finished dock_glycans in 121 seconds [~ 260 test (32.33830845771144%) started, 544 in queue, 24 running] Running Test pose_sewing ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pose_sewing/command.sh Finished splice_out_L3_longer in 84 seconds [~ 261 test (32.46268656716418%) started, 543 in queue, 24 running] Running Test ncaa_fixbb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ncaa_fixbb/command.sh Finished splice_out_H1_H2_longer in 86 seconds [~ 262 test (32.58706467661692%) started, 542 in queue, 24 running] Running Test features ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features/command.sh Finished rna_denovo_new_FT_2in_dens in 116 seconds [~ 263 test (32.711442786069654%) started, 541 in queue, 24 running] Running Test cycpep_symmetry_filter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cycpep_symmetry_filter/command.sh Finished farfar_mrna in 76 seconds [~ 264 test (32.83582089552239%) started, 540 in queue, 24 running] Running Test cleanAlignment ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cleanAlignment/command.sh Finished iphold in 92 seconds [~ 265 test (32.960199004975124%) started, 539 in queue, 24 running] Running Test balancedKIC ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/balancedKIC/command.sh Finished rotamer_probability in 94 seconds [~ 266 test (33.08457711442786%) started, 538 in queue, 24 running] Running Test simple_metrics_b_factor ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metrics_b_factor/command.sh Finished mixed_monte_carlo in 105 seconds [~ 267 test (33.208955223880594%) started, 537 in queue, 24 running] Running Test simple_grafting_movers ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_grafting_movers/command.sh Finished simple_cycpep_predict_beta_thioether_lariat in 107 seconds [~ 268 test (33.333333333333336%) started, 536 in queue, 24 running] Running Test hbnet_use_input_rot ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbnet_use_input_rot/command.sh Finished constraints_metric in 65 seconds [~ 269 test (33.45771144278607%) started, 535 in queue, 24 running] Running Test Enzrevert_xml ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/Enzrevert_xml/command.sh Finished backrub_pilot in 100 seconds [~ 270 test (33.582089552238806%) started, 534 in queue, 24 running] Running Test swm_rna_singleloop ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_singleloop/command.sh Finished task_selector in 96 seconds [~ 271 test (33.70646766169154%) started, 533 in queue, 24 running] Running Test rosie_ligand_docking ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosie_ligand_docking/command.sh Finished swa_protein_build_at_Nterminus in 91 seconds [~ 272 test (33.830845771144276%) started, 532 in queue, 24 running] Running Test ligand_dock_7cpa ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_dock_7cpa/command.sh Finished favor_native_residue in 85 seconds [~ 273 test (33.95522388059702%) started, 531 in queue, 24 running] Running Test kinemage_grid_output ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/kinemage_grid_output/command.sh Finished netcharge_design_symm in 93 seconds [~ 274 test (34.07960199004975%) started, 530 in queue, 24 running] Running Test fold_from_loops ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fold_from_loops/command.sh Finished simple_metrics_b_factor in 37 seconds [~ 275 test (34.20398009950249%) started, 529 in queue, 24 running] Running Test doug_dock_design_min_mod2_cal_cal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/doug_dock_design_min_mod2_cal_cal/command.sh Finished pose_sewing in 58 seconds [~ 276 test (34.32835820895522%) started, 528 in queue, 24 running] Finished simple_grafting_movers in 36 seconds [~ 276 test (34.32835820895522%) started, 528 in queue, 23 running] No correct command.sh file found for trRosettaConstraintGenerator. Skipping. Running Test HDXEnergy ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/HDXEnergy/command.sh Running Test splice_out_L1_L2_longer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_L1_L2_longer/command.sh Finished splice_in_4loops_shorter in 77 seconds [~ 279 test (34.701492537313435%) started, 525 in queue, 24 running] Running Test splice_in_4loops_longer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_in_4loops_longer/command.sh Finished flexpepdock_abinitio in 96 seconds [~ 280 test (34.82587064676617%) started, 524 in queue, 24 running] Running Test simple_cycpep_predict_1_4_bbmb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_1_4_bbmb/command.sh Finished rs_flexbbmoves in 76 seconds [~ 281 test (34.950248756218905%) started, 523 in queue, 24 running] Running Test hydrate ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hydrate/command.sh Finished bundlegridsampler_design_nstruct_mode in 86 seconds [~ 282 test (35.07462686567164%) started, 522 in queue, 24 running] Running Test docking_full_protocol ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_full_protocol/command.sh Finished genkic_sugars in 129 seconds [~ 283 test (35.19900497512438%) started, 521 in queue, 24 running] Running Test dock_with_hotspot_place_simultaneously ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dock_with_hotspot_place_simultaneously/command.sh Finished ppi_v3_suiteG in 81 seconds [~ 284 test (35.32338308457712%) started, 520 in queue, 24 running] Running Test UBQ_Gp_LYX-Cterm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/UBQ_Gp_LYX-Cterm/command.sh Finished ppi_v3_suiteD in 79 seconds [~ 285 test (35.44776119402985%) started, 519 in queue, 24 running] Running Test threefold_symm_peptide_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/threefold_symm_peptide_design/command.sh Finished cycpep_symmetry_filter in 65 seconds [~ 286 test (35.57213930348259%) started, 518 in queue, 24 running] Running Test splice_out_L3_same ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_L3_same/command.sh Finished balancedKIC in 65 seconds [~ 287 test (35.69651741293532%) started, 517 in queue, 24 running] Running Test splice_out_H1_H2_same ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_H1_H2_same/command.sh Finished rna_denovo_new_libs in 229 seconds [~ 288 test (35.82089552238806%) started, 516 in queue, 24 running] Running Test simple_hbondstoatom ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_hbondstoatom/command.sh Finished hbnet_use_input_rot in 62 seconds [~ 289 test (35.9452736318408%) started, 515 in queue, 24 running] Running Test simple_cycpep_predict_thioether_cis_sampling ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_thioether_cis_sampling/command.sh Finished swm_rna_move_inside_helix_by_jump in 117 seconds [~ 290 test (36.069651741293534%) started, 514 in queue, 24 running] Running Test simple_cycpep_predict_symm_gly ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_symm_gly/command.sh Finished cleanAlignment in 82 seconds [~ 291 test (36.19402985074627%) started, 513 in queue, 24 running] Running Test simple_cycpep_predict_cispro ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_cispro/command.sh Finished HDXEnergy in 51 seconds [~ 292 test (36.318407960199%) started, 512 in queue, 24 running] Running Test rosetta_scripts_include ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosetta_scripts_include/command.sh Finished kinemage_grid_output in 62 seconds [~ 293 test (36.44278606965174%) started, 511 in queue, 24 running] Running Test perturb_helical_bundle ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/perturb_helical_bundle/command.sh Finished ncaa_fixbb in 112 seconds [~ 294 test (36.56716417910448%) started, 510 in queue, 24 running] Running Test match_1n9l ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/match_1n9l/command.sh Finished Enzrevert_xml in 81 seconds [~ 295 test (36.691542288557216%) started, 509 in queue, 24 running] Running Test genkic_lowmemory_mode ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_lowmemory_mode/command.sh Finished features in 113 seconds [~ 296 test (36.81592039800995%) started, 508 in queue, 24 running] Running Test KIC_refine ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/KIC_refine/command.sh Finished hydrate in 59 seconds [~ 297 test (36.940298507462686%) started, 507 in queue, 24 running] Running Test InterfaceAnalyzer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer/command.sh Finished splice_in_4loops_longer in 62 seconds [~ 298 test (37.06467661691542%) started, 506 in queue, 24 running] Running Test pocket_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pocket_relax/command.sh Finished rosie_ligand_docking in 83 seconds [~ 299 test (37.18905472636816%) started, 505 in queue, 24 running] Running Test multistage_rosetta_scripts ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/multistage_rosetta_scripts/command.sh Finished splice_out_L1_L2_longer in 68 seconds [~ 300 test (37.3134328358209%) started, 504 in queue, 24 running] Running Test helical_bundle_nonideal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_nonideal/command.sh Finished swm_rna_singleloop in 86 seconds [~ 301 test (37.43781094527363%) started, 503 in queue, 24 running] Running Test favor_coupling_tensor ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/favor_coupling_tensor/command.sh Finished fold_from_loops in 77 seconds [~ 302 test (37.56218905472637%) started, 502 in queue, 24 running] Running Test KIC_vicinity ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/KIC_vicinity/command.sh Finished simple_cycpep_predict_1_4_bbmb in 71 seconds [~ 303 test (37.6865671641791%) started, 501 in queue, 24 running] Running Test torsion_restricted_sampling ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/torsion_restricted_sampling/command.sh Finished dock_with_hotspot_place_simultaneously in 70 seconds [~ 304 test (37.81094527363184%) started, 500 in queue, 24 running] Running Test sequence_profile_constraints ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sequence_profile_constraints/command.sh Finished doug_dock_design_min_mod2_cal_cal in 80 seconds [~ 305 test (37.93532338308458%) started, 499 in queue, 24 running] Running Test score12_docking ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/score12_docking/command.sh Finished ligand_dock_7cpa in 96 seconds [~ 306 test (38.059701492537314%) started, 498 in queue, 24 running] Running Test place_simultaneously ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/place_simultaneously/command.sh Finished splice_out_H1_H2_same in 65 seconds [~ 307 test (38.18407960199005%) started, 497 in queue, 24 running] Running Test bundlegridsampler_z1_offset ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_z1_offset/command.sh Finished simple_hbondstoatom in 57 seconds [~ 308 test (38.308457711442784%) started, 496 in queue, 24 running] Running Test bundlegridsampler_z0_offset ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_z0_offset/command.sh Finished docking_full_protocol in 87 seconds [~ 309 test (38.43283582089552%) started, 495 in queue, 24 running] Running Test auto-drrafter_final_results ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/auto-drrafter_final_results/command.sh Finished splice_out_L3_same in 71 seconds [~ 310 test (38.55721393034826%) started, 494 in queue, 24 running] Running Test symmetry_multicomponent ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symmetry_multicomponent/command.sh Finished threefold_symm_peptide_design in 82 seconds [~ 311 test (38.681592039801%) started, 493 in queue, 24 running] Running Test swm_protein_loop_sampler ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_protein_loop_sampler/command.sh Finished UBQ_Gp_LYX-Cterm in 86 seconds [~ 312 test (38.80597014925373%) started, 492 in queue, 24 running] Running Test swm_beta_peptide_loop ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_beta_peptide_loop/command.sh Finished rosetta_scripts_include in 56 seconds [~ 313 test (38.930348258706466%) started, 491 in queue, 24 running] Running Test splice_out_L1_L2_same ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_L1_L2_same/command.sh Finished simple_cycpep_predict_symm_gly in 75 seconds [~ 314 test (39.0547263681592%) started, 490 in queue, 24 running] Finished simple_cycpep_predict_cispro in 71 seconds [~ 314 test (39.0547263681592%) started, 490 in queue, 23 running] Finished perturb_helical_bundle in 56 seconds [~ 314 test (39.0547263681592%) started, 490 in queue, 22 running] Running Test simple_metric_filter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metric_filter/command.sh Running Test match_6cpa ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/match_6cpa/command.sh Running Test ligand_motif_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_motif_design/command.sh Finished genkic_lowmemory_mode in 59 seconds [~ 317 test (39.42786069651741%) started, 487 in queue, 24 running] Running Test density_refine ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/density_refine/command.sh Finished multistage_rosetta_scripts in 55 seconds [~ 318 test (39.55223880597015%) started, 486 in queue, 24 running] Running Test crosslinkermover_trigonal_pyramidal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_trigonal_pyramidal/command.sh Finished helical_bundle_nonideal in 56 seconds [~ 319 test (39.67661691542288%) started, 485 in queue, 24 running] Running Test cart_min_glycans ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cart_min_glycans/command.sh Finished InterfaceAnalyzer in 63 seconds [~ 320 test (39.80099502487562%) started, 484 in queue, 24 running] Running Test backrub_interface_ddG ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backrub_interface_ddG/command.sh Finished symmetry_multicomponent in 44 seconds [~ 321 test (39.92537313432836%) started, 483 in queue, 24 running] Running Test loop_modeling ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/loop_modeling/command.sh Finished favor_coupling_tensor in 70 seconds [~ 322 test (40.049751243781095%) started, 482 in queue, 24 running] Running Test loop_grower_N_term_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/loop_grower_N_term_symm/command.sh Finished auto-drrafter_final_results in 47 seconds [~ 323 test (40.17412935323383%) started, 481 in queue, 24 running] Running Test jd2test_PDBin_mmCIFout ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jd2test_PDBin_mmCIFout/command.sh Finished score12_docking in 62 seconds [~ 324 test (40.298507462686565%) started, 480 in queue, 24 running] Running Test jd2test_PDBIO ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jd2test_PDBIO/command.sh Finished sequence_profile_constraints in 64 seconds [~ 325 test (40.4228855721393%) started, 479 in queue, 24 running] Running Test inv_kin_lig_loop_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/inv_kin_lig_loop_design/command.sh Finished simple_cycpep_predict_thioether_cis_sampling in 110 seconds [~ 326 test (40.54726368159204%) started, 478 in queue, 24 running] Running Test hbonds ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbonds/command.sh Finished KIC_refine in 83 seconds [~ 327 test (40.67164179104478%) started, 477 in queue, 24 running] Running Test design_w_custom_palette-NCAAs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/design_w_custom_palette-NCAAs/command.sh Finished pocket_relax in 86 seconds [~ 328 test (40.79601990049751%) started, 476 in queue, 24 running] Running Test crosslinkermover_trigonal_planar ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_trigonal_planar/command.sh Finished KIC_vicinity in 83 seconds [~ 329 test (40.92039800995025%) started, 475 in queue, 24 running] Running Test bin_initialization ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bin_initialization/command.sh Finished place_simultaneously in 68 seconds [~ 330 test (41.04477611940298%) started, 474 in queue, 24 running] Running Test swm_general_polymer_sampler ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_general_polymer_sampler/command.sh Finished bundlegridsampler_z1_offset in 68 seconds [~ 331 test (41.169154228855724%) started, 473 in queue, 24 running] Running Test splice_out_L3_shorter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_L3_shorter/command.sh Finished bundlegridsampler_z0_offset in 68 seconds [~ 332 test (41.29353233830846%) started, 472 in queue, 24 running] Running Test simple_metric_features ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metric_features/command.sh Finished simple_metric_filter in 51 seconds [~ 333 test (41.417910447761194%) started, 471 in queue, 24 running] Running Test simple_glycosylation_alternate_AAs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_glycosylation_alternate_AAs/command.sh Finished splice_out_L1_L2_same in 59 seconds [~ 334 test (41.54228855721393%) started, 470 in queue, 24 running] Running Test simple_cycpep_predict_tetrahedral_metal_asp ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_tetrahedral_metal_asp/command.sh Finished swm_protein_loop_sampler in 72 seconds [~ 335 test (41.666666666666664%) started, 469 in queue, 24 running] Running Test simple_cycpep_predict_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_design/command.sh Finished torsion_restricted_sampling in 101 seconds [~ 336 test (41.791044776119406%) started, 468 in queue, 24 running] Running Test score_only_silence ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/score_only_silence/command.sh Finished swm_beta_peptide_loop in 72 seconds [~ 337 test (41.91542288557214%) started, 467 in queue, 24 running] Running Test residue_energy_breakdown ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/residue_energy_breakdown/command.sh Finished ligand_motif_design in 71 seconds [~ 338 test (42.039800995024876%) started, 466 in queue, 24 running] Running Test oligourea_predict ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/oligourea_predict/command.sh Finished cart_min_glycans in 62 seconds [~ 339 test (42.16417910447761%) started, 465 in queue, 24 running] Running Test multistage_rosetta_scripts_clustering ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/multistage_rosetta_scripts_clustering/command.sh Finished crosslinkermover_trigonal_pyramidal in 65 seconds [~ 340 test (42.288557213930346%) started, 464 in queue, 24 running] Running Test membrane_abinitio ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/membrane_abinitio/command.sh Finished density_refine in 67 seconds [~ 341 test (42.41293532338308%) started, 463 in queue, 24 running] Running Test make_mainchain_potential ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_mainchain_potential/command.sh Finished loop_grower_N_term_symm in 51 seconds [~ 342 test (42.53731343283582%) started, 462 in queue, 24 running] Running Test jd2test_PDBin_mmCIFout_extra_data_separate ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jd2test_PDBin_mmCIFout_extra_data_separate/command.sh Finished jd2test_PDBIO in 56 seconds [~ 343 test (42.66169154228856%) started, 461 in queue, 24 running] Running Test design_w_custom_palette-CAAs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/design_w_custom_palette-CAAs/command.sh Finished jd2test_PDBin_mmCIFout in 61 seconds [~ 344 test (42.78606965174129%) started, 460 in queue, 24 running] Running Test carbohydrates ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/carbohydrates/command.sh Finished design_w_custom_palette-NCAAs in 60 seconds [~ 345 test (42.91044776119403%) started, 459 in queue, 24 running] Running Test bundlegridsampler_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_design/command.sh Finished match_6cpa in 94 seconds [~ 346 test (43.03482587064676%) started, 458 in queue, 24 running] Running Test RunSimpleMetric_b_factor_test ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/RunSimpleMetric_b_factor_test/command.sh Finished simple_cycpep_predict_tetrahedral_metal_asp in 40 seconds [~ 347 test (43.159203980099505%) started, 457 in queue, 24 running] Running Test tcrmodel ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/tcrmodel/command.sh Finished inv_kin_lig_loop_design in 67 seconds [~ 348 test (43.28358208955224%) started, 456 in queue, 24 running] Running Test splice_out_H1_H2_shorter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_H1_H2_shorter/command.sh Finished crosslinkermover_trigonal_planar in 59 seconds [~ 349 test (43.407960199004975%) started, 455 in queue, 24 running] Finished splice_out_L3_shorter in 52 seconds [~ 349 test (43.407960199004975%) started, 455 in queue, 23 running] Running Test simple_metrics_in_protocols ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metrics_in_protocols/command.sh Running Test simple_metric_cache ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metric_cache/command.sh Finished simple_glycosylation_alternate_AAs in 49 seconds [~ 351 test (43.656716417910445%) started, 453 in queue, 24 running] Running Test rna_puzzle11_H2H3H4_run3_connectU40 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_puzzle11_H2H3H4_run3_connectU40/command.sh /home/benchmark/rosetta/tests/integration/new/simple_metric_features/command.sh: line 12: dump.sql: No such file or directory Finished simple_metric_features in 58 seconds [~ 352 test (43.78109452736319%) started, 452 in queue, 24 running] Running Test rna_farfar_noncanonical_hairpin ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_farfar_noncanonical_hairpin/command.sh Finished hbonds in 74 seconds [~ 353 test (43.90547263681592%) started, 451 in queue, 24 running] Running Test mm_params ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mm_params/command.sh Finished backrub_interface_ddG in 95 seconds [~ 354 test (44.02985074626866%) started, 450 in queue, 24 running] Running Test minimize_with_elec_dens ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/minimize_with_elec_dens/command.sh Finished bin_initialization in 68 seconds [~ 355 test (44.15422885572139%) started, 449 in queue, 24 running] Running Test enumerative_sampling ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enumerative_sampling/command.sh Finished residue_energy_breakdown in 48 seconds [~ 356 test (44.27860696517413%) started, 448 in queue, 24 running] Running Test centroid_from_fullatom ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/centroid_from_fullatom/command.sh Finished oligourea_predict in 43 seconds [~ 357 test (44.40298507462686%) started, 447 in queue, 24 running] Running Test antibody_designer_camelid ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_designer_camelid/command.sh Finished score_only_silence in 53 seconds [~ 358 test (44.527363184079604%) started, 446 in queue, 24 running] Running Test AnchorFinder ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/AnchorFinder/command.sh Finished match_1n9l in 172 seconds [~ 359 test (44.65174129353234%) started, 445 in queue, 24 running] Finished multistage_rosetta_scripts_clustering in 42 seconds [~ 359 test (44.65174129353234%) started, 445 in queue, 23 running] Running Test simple_cycpep_predict_thioether_lariat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_thioether_lariat/command.sh Running Test sasa_metric_options ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sasa_metric_options/command.sh Finished tcrmodel in 25 seconds [~ 361 test (44.90049751243781%) started, 443 in queue, 24 running] Running Test motif_score_filter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/motif_score_filter/command.sh Finished loop_modeling in 100 seconds [~ 362 test (45.024875621890544%) started, 442 in queue, 24 running] Running Test mhc_epitope_nmer_preload ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mhc_epitope_nmer_preload/command.sh Finished simple_cycpep_predict_design in 69 seconds [~ 363 test (45.149253731343286%) started, 441 in queue, 24 running] Running Test mf_fixbb_des ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mf_fixbb_des/command.sh Finished jd2test_PDBin_mmCIFout_extra_data_separate in 57 seconds [~ 364 test (45.27363184079602%) started, 440 in queue, 24 running] Running Test glycan_anomers ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycan_anomers/command.sh Finished carbohydrates in 48 seconds [~ 365 test (45.398009950248756%) started, 439 in queue, 24 running] Finished RunSimpleMetric_b_factor_test in 43 seconds [~ 365 test (45.398009950248756%) started, 439 in queue, 23 running] Running Test crosslinkermover_trigonal_pyramidal_c3_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_trigonal_pyramidal_c3_symm/command.sh Running Test crosslinkermover_trigonal_planar_c3_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_trigonal_planar_c3_symm/command.sh Finished simple_metrics_in_protocols in 44 seconds [~ 367 test (45.646766169154226%) started, 437 in queue, 24 running] Running Test bundlegridsampler_multirepeat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_multirepeat/command.sh Finished membrane_abinitio in 67 seconds [~ 368 test (45.77114427860697%) started, 436 in queue, 24 running] Running Test UBQ_Gp_CYD-CYD ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/UBQ_Gp_CYD-CYD/command.sh Finished make_mainchain_potential in 67 seconds [~ 369 test (45.8955223880597%) started, 435 in queue, 24 running] Running Test LayerSelector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/LayerSelector/command.sh Finished simple_metric_cache in 46 seconds [~ 370 test (46.01990049751244%) started, 434 in queue, 24 running] Running Test splice_out_L1_L2_shorter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_L1_L2_shorter/command.sh Finished design_w_custom_palette-CAAs in 60 seconds [~ 371 test (46.14427860696517%) started, 433 in queue, 24 running] Running Test ncbb_packer_palette ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ncbb_packer_palette/command.sh Finished mm_params in 46 seconds [~ 372 test (46.26865671641791%) started, 432 in queue, 24 running] Running Test match_xml ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/match_xml/command.sh Finished bundlegridsampler_design in 58 seconds [~ 373 test (46.39303482587065%) started, 431 in queue, 24 running] Running Test hbonds_sp2 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbonds_sp2/command.sh Finished splice_out_H1_H2_shorter in 56 seconds [~ 374 test (46.517412935323385%) started, 430 in queue, 24 running] Running Test crosslinkermover_methyllanthionine ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_methyllanthionine/command.sh Finished centroid_from_fullatom in 43 seconds [~ 375 test (46.64179104477612%) started, 429 in queue, 24 running] Running Test add_constraints_to_current_conformation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/add_constraints_to_current_conformation/command.sh Finished antibody_designer_camelid in 45 seconds [~ 376 test (46.766169154228855%) started, 428 in queue, 24 running] Running Test InterfaceAnalyzer_metrics ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_metrics/command.sh Finished motif_score_filter in 42 seconds [~ 377 test (46.89054726368159%) started, 427 in queue, 24 running] Running Test AnchoredPDBCreator ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/AnchoredPDBCreator/command.sh Finished minimize_with_elec_dens in 55 seconds [~ 378 test (47.014925373134325%) started, 426 in queue, 24 running] Finished enumerative_sampling in 54 seconds [~ 378 test (47.014925373134325%) started, 426 in queue, 23 running] Running Test thermal_sampler ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/thermal_sampler/command.sh Running Test swa_protein_build_at_Cterminus ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_build_at_Cterminus/command.sh Finished sasa_metric_options in 48 seconds [~ 380 test (47.2636815920398%) started, 424 in queue, 24 running] Running Test splice_out_H3_same ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_H3_same/command.sh Finished swm_general_polymer_sampler in 123 seconds [~ 381 test (47.38805970149254%) started, 423 in queue, 24 running] Running Test rollmover ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rollmover/command.sh Finished AnchorFinder in 54 seconds [~ 382 test (47.51243781094527%) started, 422 in queue, 24 running] Finished simple_cycpep_predict_thioether_lariat in 53 seconds [~ 382 test (47.51243781094527%) started, 422 in queue, 23 running] Running Test recon_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/recon_design/command.sh Running Test metropolis_hastings ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/metropolis_hastings/command.sh Finished mhc_epitope_nmer_preload in 51 seconds [~ 384 test (47.76119402985075%) started, 420 in queue, 24 running] Running Test ligand_dock_grid ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_dock_grid/command.sh Finished rna_farfar_noncanonical_hairpin in 78 seconds [~ 385 test (47.885572139303484%) started, 419 in queue, 24 running] Running Test density_denovo ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/density_denovo/command.sh Finished glycan_anomers in 50 seconds [~ 386 test (48.00995024875622%) started, 418 in queue, 24 running] Running Test broker ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/broker/command.sh Finished crosslinkermover_trigonal_pyramidal_c3_symm in 50 seconds [~ 387 test (48.134328358208954%) started, 417 in queue, 24 running] Running Test antibody_graft ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_graft/command.sh Finished crosslinkermover_trigonal_planar_c3_symm in 53 seconds [~ 388 test (48.25870646766169%) started, 416 in queue, 24 running] Running Test UBQ_E2_thioester_two_ubiquitins ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/UBQ_E2_thioester_two_ubiquitins/command.sh Finished bundlegridsampler_multirepeat in 49 seconds [~ 389 test (48.38308457711443%) started, 415 in queue, 24 running] Running Test ThreadingInputter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ThreadingInputter/command.sh Finished splice_out_L1_L2_shorter in 50 seconds [~ 390 test (48.507462686567166%) started, 414 in queue, 24 running] Running Test thread_local_tracers_check ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/thread_local_tracers_check/command.sh Finished mf_fixbb_des in 66 seconds [~ 391 test (48.6318407960199%) started, 413 in queue, 24 running] Running Test simple_cycpep_predict_square_planar_metal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_square_planar_metal/command.sh Finished thread_local_tracers_check in 2 seconds [~ 392 test (48.756218905472636%) started, 412 in queue, 24 running] Running Test posttranslationalmod_io ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/posttranslationalmod_io/command.sh Finished LayerSelector in 56 seconds [~ 393 test (48.88059701492537%) started, 411 in queue, 24 running] Running Test perturb_helical_bundle_setting ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/perturb_helical_bundle_setting/command.sh Finished crosslinkermover_methyllanthionine in 47 seconds [~ 394 test (49.004975124378106%) started, 410 in queue, 24 running] Running Test oligourea_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/oligourea_design/command.sh Finished ncbb_packer_palette in 60 seconds [~ 395 test (49.12935323383085%) started, 409 in queue, 24 running] Running Test min_pack_min ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/min_pack_min/command.sh Finished InterfaceAnalyzer_metrics in 47 seconds [~ 396 test (49.25373134328358%) started, 408 in queue, 24 running] Running Test ReadResfile_with_selector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ReadResfile_with_selector/command.sh Finished add_constraints_to_current_conformation in 54 seconds [~ 397 test (49.37810945273632%) started, 407 in queue, 24 running] Running Test LayerDesign ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/LayerDesign/command.sh Finished UBQ_Gp_CYD-CYD in 67 seconds [~ 398 test (49.50248756218905%) started, 406 in queue, 24 running] Running Test zinc_homodimer_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/zinc_homodimer_design/command.sh Finished rollmover in 44 seconds [~ 399 test (49.62686567164179%) started, 405 in queue, 24 running] Running Test startfrom_file ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/startfrom_file/command.sh Finished match_xml in 62 seconds [~ 400 test (49.75124378109453%) started, 404 in queue, 24 running] Running Test splice_out_H3_shorter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_H3_shorter/command.sh Finished splice_out_H3_same in 48 seconds [~ 401 test (49.875621890547265%) started, 403 in queue, 24 running] Running Test simple_cycpep_predict_peptoid ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_peptoid/command.sh Finished rna_puzzle11_H2H3H4_run3_connectU40 in 114 seconds [~ 402 test (50.0%) started, 402 in queue, 24 running] Running Test repack_with_elec_dens ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/repack_with_elec_dens/command.sh Finished recon_design in 45 seconds [~ 403 test (50.124378109452735%) started, 401 in queue, 24 running] Running Test pna ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pna/command.sh Finished metropolis_hastings in 46 seconds [~ 404 test (50.24875621890547%) started, 400 in queue, 24 running] Running Test glycan_sequon_scanner ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycan_sequon_scanner/command.sh Finished swa_protein_build_at_Cterminus in 53 seconds [~ 405 test (50.37313432835821%) started, 399 in queue, 24 running] Running Test glycan_refinment ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycan_refinment/command.sh Finished hbonds_sp2 in 68 seconds [~ 406 test (50.49751243781095%) started, 398 in queue, 24 running] Finished thermal_sampler in 56 seconds [~ 406 test (50.49751243781095%) started, 398 in queue, 23 running] Running Test enzscore_filter_dimetal_sym ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enzscore_filter_dimetal_sym/command.sh Running Test enzscore_filter_metal_sym ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enzscore_filter_metal_sym/command.sh Finished ligand_dock_grid in 43 seconds [~ 408 test (50.74626865671642%) started, 396 in queue, 24 running] Running Test coarse_rna_scoring ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/coarse_rna_scoring/command.sh Finished density_denovo in 42 seconds [~ 409 test (50.87064676616915%) started, 395 in queue, 24 running] Running Test classic_relax_1a19 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/classic_relax_1a19/command.sh Finished simple_cycpep_predict_square_planar_metal in 30 seconds [~ 410 test (50.995024875621894%) started, 394 in queue, 24 running] Running Test backbonegridsampler_nstruct_mode ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backbonegridsampler_nstruct_mode/command.sh Finished AnchoredPDBCreator in 67 seconds [~ 411 test (51.11940298507463%) started, 393 in queue, 24 running] Running Test PeptideCyclizeMover ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/PeptideCyclizeMover/command.sh Finished posttranslationalmod_io in 41 seconds [~ 412 test (51.243781094527364%) started, 392 in queue, 24 running] Running Test test_computed_saxs_spectrum ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/test_computed_saxs_spectrum/command.sh Finished broker in 55 seconds [~ 413 test (51.3681592039801%) started, 391 in queue, 24 running] Running Test swm_rna_checkpoint_partition ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_checkpoint_partition/command.sh Finished ThreadingInputter in 50 seconds [~ 414 test (51.492537313432834%) started, 390 in queue, 24 running] Running Test swm_protein_move_inside_helix_by_bond ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_protein_move_inside_helix_by_bond/command.sh Finished antibody_graft in 56 seconds [~ 415 test (51.61691542288557%) started, 389 in queue, 24 running] Running Test simple_dna_test ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_dna_test/command.sh Finished perturb_helical_bundle_setting in 44 seconds [~ 416 test (51.74129353233831%) started, 388 in queue, 24 running] Running Test rosetta_scripts_hbond_options ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosetta_scripts_hbond_options/command.sh Finished oligourea_design in 44 seconds [~ 417 test (51.865671641791046%) started, 387 in queue, 24 running] Running Test ppk ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppk/command.sh Finished startfrom_file in 39 seconds [~ 418 test (51.99004975124378%) started, 386 in queue, 24 running] Running Test mp_ligand_interface ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_ligand_interface/command.sh Finished splice_out_H3_shorter in 41 seconds [~ 419 test (52.114427860696516%) started, 385 in queue, 24 running] Finished glycan_sequon_scanner in 38 seconds [~ 419 test (52.114427860696516%) started, 385 in queue, 23 running] Running Test genkic_rama_filter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_rama_filter/command.sh Running Test fuzzy ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fuzzy/command.sh Finished ReadResfile_with_selector in 48 seconds [~ 421 test (52.36318407960199%) started, 383 in queue, 24 running] Running Test enzscore_filter_metal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enzscore_filter_metal/command.sh Finished glycan_refinment in 40 seconds [~ 422 test (52.48756218905473%) started, 382 in queue, 24 running] Running Test enzscore_filter_dimetal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enzscore_filter_dimetal/command.sh Finished LayerDesign in 49 seconds [~ 423 test (52.61194029850746%) started, 381 in queue, 24 running] Running Test ddG_scan ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ddG_scan/command.sh Finished UBQ_E2_thioester_two_ubiquitins in 69 seconds [~ 424 test (52.7363184079602%) started, 380 in queue, 24 running] Finished repack_with_elec_dens in 44 seconds [~ 424 test (52.7363184079602%) started, 380 in queue, 23 running] Running Test crosslinkermover_tetrahedral_metal_asp ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal_asp/command.sh Running Test crosslinkermover_lanthionine ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_lanthionine/command.sh Finished enzscore_filter_dimetal_sym in 44 seconds [~ 426 test (52.985074626865675%) started, 378 in queue, 24 running] Running Test backbonegridsampler_multiresidue ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backbonegridsampler_multiresidue/command.sh Finished zinc_homodimer_design in 53 seconds [~ 427 test (53.10945273631841%) started, 377 in queue, 24 running] Running Test symmetric_docking ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symmetric_docking/command.sh Finished coarse_rna_scoring in 42 seconds [~ 428 test (53.233830845771145%) started, 376 in queue, 24 running] Running Test sim_cryo ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sim_cryo/command.sh Finished enzscore_filter_metal_sym in 45 seconds [~ 429 test (53.35820895522388%) started, 375 in queue, 24 running] Running Test rosetta_scripts_setup ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosetta_scripts_setup/command.sh Finished PeptideCyclizeMover in 36 seconds [~ 430 test (53.482587064676615%) started, 374 in queue, 24 running] Running Test rna_denovo_base_pair_setup ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_base_pair_setup/command.sh Finished backbonegridsampler_nstruct_mode in 50 seconds [~ 431 test (53.60696517412935%) started, 373 in queue, 24 running] Running Test repeat_propagate_v3 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/repeat_propagate_v3/command.sh Finished min_pack_min in 72 seconds [~ 432 test (53.73134328358209%) started, 372 in queue, 24 running] Running Test repeat_propagate ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/repeat_propagate/command.sh Finished classic_relax_1a19 in 54 seconds [~ 433 test (53.85572139303483%) started, 371 in queue, 24 running] Running Test protocol_metric ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/protocol_metric/command.sh Finished test_computed_saxs_spectrum in 41 seconds [~ 434 test (53.98009950248756%) started, 370 in queue, 24 running] Running Test perturb_helical_bundle_z_offset ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/perturb_helical_bundle_z_offset/command.sh Finished ppk in 37 seconds [~ 435 test (54.1044776119403%) started, 369 in queue, 24 running] Running Test perturb_helical_bundle_epsilon ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/perturb_helical_bundle_epsilon/command.sh Finished simple_cycpep_predict_peptoid in 71 seconds [~ 436 test (54.22885572139303%) started, 368 in queue, 24 running] Running Test metalloprotein_abrelax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/metalloprotein_abrelax/command.sh Finished pna in 69 seconds [~ 437 test (54.353233830845774%) started, 367 in queue, 24 running] Running Test grid_scores_features ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/grid_scores_features/command.sh Finished mp_ligand_interface in 39 seconds [~ 438 test (54.47761194029851%) started, 366 in queue, 24 running] Running Test exclusively_shared_jumps ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/exclusively_shared_jumps/command.sh Finished genkic_rama_filter in 40 seconds [~ 439 test (54.601990049751244%) started, 365 in queue, 24 running] Finished enzscore_filter_metal in 39 seconds [~ 439 test (54.601990049751244%) started, 365 in queue, 23 running] Running Test custom_basetype_packer_palette ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/custom_basetype_packer_palette/command.sh Running Test crosslinkermover_thioether ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_thioether/command.sh Finished fuzzy in 42 seconds [~ 441 test (54.850746268656714%) started, 363 in queue, 24 running] Running Test create_sequence_motif ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/create_sequence_motif/command.sh Finished crosslinkermover_lanthionine in 38 seconds [~ 442 test (54.975124378109456%) started, 362 in queue, 24 running] Running Test UnsatSelector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/UnsatSelector/command.sh Finished crosslinkermover_tetrahedral_metal_asp in 39 seconds [~ 443 test (55.09950248756219%) started, 361 in queue, 24 running] Running Test LayerDesign_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/LayerDesign_symm/command.sh Finished rosetta_scripts_setup in 34 seconds [~ 444 test (55.223880597014926%) started, 360 in queue, 24 running] Running Test FloppyTail ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/FloppyTail/command.sh Finished swm_protein_move_inside_helix_by_bond in 58 seconds [~ 445 test (55.34825870646766%) started, 359 in queue, 24 running] Running Test FlipChirality ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/FlipChirality/command.sh Finished enzscore_filter_dimetal in 42 seconds [~ 446 test (55.472636815920396%) started, 358 in queue, 24 running] Running Test ContactMolecularSurface ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ContactMolecularSurface/command.sh Finished rna_denovo_base_pair_setup in 33 seconds [~ 447 test (55.59701492537314%) started, 357 in queue, 24 running] Running Test write_mol_file ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/write_mol_file/command.sh Finished simple_dna_test in 59 seconds [~ 448 test (55.72139303482587%) started, 356 in queue, 24 running] Running Test vancomycin ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/vancomycin/command.sh Finished backbonegridsampler_multiresidue in 40 seconds [~ 449 test (55.84577114427861%) started, 355 in queue, 24 running] Running Test threefoldlinkermover_tbmb_symmetric ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/threefoldlinkermover_tbmb_symmetric/command.sh Finished ddG_scan in 46 seconds [~ 450 test (55.97014925373134%) started, 354 in queue, 24 running] Running Test threefoldlinkermover_tbmb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/threefoldlinkermover_tbmb/command.sh Finished rosetta_scripts_hbond_options in 62 seconds [~ 451 test (56.09452736318408%) started, 353 in queue, 24 running] Running Test symmetry_data_resource ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symmetry_data_resource/command.sh Finished symmetric_docking in 44 seconds [~ 452 test (56.21890547263681%) started, 352 in queue, 24 running] Running Test symmetric_cycpep_align_and_symmetrize ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symmetric_cycpep_align_and_symmetrize/command.sh Finished swm_rna_checkpoint_partition in 68 seconds [~ 453 test (56.343283582089555%) started, 351 in queue, 24 running] Running Test sample_seq_from_probs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sample_seq_from_probs/command.sh Finished repeat_propagate_v3 in 35 seconds [~ 454 test (56.46766169154229%) started, 350 in queue, 24 running] Running Test rotamer_recovery ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rotamer_recovery/command.sh Finished repeat_propagate in 33 seconds [~ 455 test (56.592039800995025%) started, 349 in queue, 24 running] Running Test rna_farfar_syn_chi_res ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_farfar_syn_chi_res/command.sh Finished protocol_metric in 36 seconds [~ 456 test (56.71641791044776%) started, 348 in queue, 24 running] Running Test resource_database_locator ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/resource_database_locator/command.sh Finished perturb_helical_bundle_z_offset in 36 seconds [~ 457 test (56.840796019900495%) started, 347 in queue, 24 running] Running Test res_lipo_ref2015_memb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/res_lipo_ref2015_memb/command.sh Finished perturb_helical_bundle_epsilon in 36 seconds [~ 458 test (56.96517412935324%) started, 346 in queue, 24 running] Running Test repeat_propagate_v2 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/repeat_propagate_v2/command.sh Finished sim_cryo in 58 seconds [~ 459 test (57.08955223880597%) started, 345 in queue, 24 running] Running Test real_virt_mover ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/real_virt_mover/command.sh Finished exclusively_shared_jumps in 35 seconds [~ 460 test (57.21393034825871%) started, 344 in queue, 24 running] Running Test readin_dna_rna_protein ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/readin_dna_rna_protein/command.sh Finished grid_scores_features in 42 seconds [~ 461 test (57.33830845771144%) started, 343 in queue, 24 running] Running Test rdkit_metrics ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rdkit_metrics/command.sh Finished metalloprotein_abrelax in 45 seconds [~ 462 test (57.46268656716418%) started, 342 in queue, 24 running] Running Test rama_mutation_selector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rama_mutation_selector/command.sh Finished custom_basetype_packer_palette in 35 seconds [~ 463 test (57.58706467661692%) started, 341 in queue, 24 running] Running Test pna_base_pairs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pna_base_pairs/command.sh Finished UnsatSelector in 34 seconds [~ 464 test (57.711442786069654%) started, 340 in queue, 24 running] Finished FlipChirality in 33 seconds [~ 464 test (57.711442786069654%) started, 340 in queue, 23 running] Running Test mp_quick_relax_ref2015_memb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_quick_relax_ref2015_memb/command.sh Running Test mp_span_ang_ref2015_memb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_span_ang_ref2015_memb/command.sh Finished crosslinkermover_thioether in 37 seconds [~ 466 test (57.960199004975124%) started, 338 in queue, 24 running] Running Test mf_flexbb_sc ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mf_flexbb_sc/command.sh Finished ContactMolecularSurface in 36 seconds [~ 467 test (58.08457711442786%) started, 337 in queue, 24 running] Running Test make_rot_lib ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_rot_lib/command.sh Finished create_sequence_motif in 39 seconds [~ 468 test (58.208955223880594%) started, 336 in queue, 24 running] Running Test loop_creation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/loop_creation/command.sh Finished write_mol_file in 36 seconds [~ 469 test (58.333333333333336%) started, 335 in queue, 24 running] Running Test genkic_ramaprepro_sampling ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_ramaprepro_sampling/command.sh Finished LayerDesign_symm in 40 seconds [~ 470 test (58.45771144278607%) started, 334 in queue, 24 running] Finished threefoldlinkermover_tbmb_symmetric in 35 seconds [~ 470 test (58.45771144278607%) started, 334 in queue, 23 running] Running Test features_pdb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features_pdb/command.sh Running Test database_session_resource ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/database_session_resource/command.sh Finished symmetry_data_resource in 34 seconds [~ 472 test (58.70646766169154%) started, 332 in queue, 24 running] Finished symmetric_cycpep_align_and_symmetrize in 33 seconds [~ 472 test (58.70646766169154%) started, 332 in queue, 23 running] Running Test cst_info ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cst_info/command.sh Running Test crosslinkermover_tetrahedral_metal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal/command.sh Finished threefoldlinkermover_tbmb in 36 seconds [~ 474 test (58.95522388059702%) started, 330 in queue, 24 running] Running Test bin_perturbation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bin_perturbation/command.sh Finished sample_seq_from_probs in 34 seconds [~ 475 test (59.07960199004975%) started, 329 in queue, 24 running] Running Test autosetup_metals_centroid ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/autosetup_metals_centroid/command.sh Finished FloppyTail in 47 seconds [~ 476 test (59.20398009950249%) started, 328 in queue, 24 running] Running Test RBOut ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/RBOut/command.sh Finished vancomycin in 44 seconds [~ 477 test (59.32835820895522%) started, 327 in queue, 24 running] Running Test PDB_diagnostic ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/PDB_diagnostic/command.sh Finished res_lipo_ref2015_memb in 33 seconds [~ 478 test (59.45273631840796%) started, 326 in queue, 24 running] Running Test InterfaceDdG ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceDdG/command.sh Finished rotamer_recovery in 41 seconds [~ 479 test (59.5771144278607%) started, 325 in queue, 24 running] Running Test DumpTrajectoryEnergy_packing ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DumpTrajectoryEnergy_packing/command.sh Finished repeat_propagate_v2 in 33 seconds [~ 480 test (59.701492537313435%) started, 324 in queue, 24 running] Running Test ConsensusLoopDesign ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ConsensusLoopDesign/command.sh Finished resource_database_locator in 38 seconds [~ 481 test (59.82587064676617%) started, 323 in queue, 24 running] Running Test BFactorSelector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/BFactorSelector/command.sh Finished real_virt_mover in 34 seconds [~ 482 test (59.950248756218905%) started, 322 in queue, 24 running] Running Test swm_rna_fourwayjunction ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_fourwayjunction/command.sh Finished rna_farfar_syn_chi_res in 47 seconds [~ 483 test (60.07462686567164%) started, 321 in queue, 24 running] Running Test swm_protein_move_inside_coiledcoil_by_bond ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_protein_move_inside_coiledcoil_by_bond/command.sh Finished rdkit_metrics in 35 seconds [~ 484 test (60.19900497512438%) started, 320 in queue, 24 running] Running Test swm_protein_CCDmove ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_protein_CCDmove/command.sh Finished rama_mutation_selector in 34 seconds [~ 485 test (60.32338308457712%) started, 319 in queue, 24 running] Running Test swa_rna_gagu_15_combine_long_loop_sampling ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_15_combine_long_loop_sampling/command.sh Finished pna_base_pairs in 35 seconds [~ 486 test (60.44776119402985%) started, 318 in queue, 24 running] Running Test smallmover_resselector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/smallmover_resselector/command.sh Finished mp_span_ang_ref2015_memb in 34 seconds [~ 487 test (60.57213930348259%) started, 317 in queue, 24 running] Running Test sequence_recovery ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sequence_recovery/command.sh Finished mp_quick_relax_ref2015_memb in 34 seconds [~ 488 test (60.69651741293532%) started, 316 in queue, 24 running] Running Test selected_residue_count_metric ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/selected_residue_count_metric/command.sh Finished mf_flexbb_sc in 34 seconds [~ 489 test (60.82089552238806%) started, 315 in queue, 24 running] Running Test rna_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_design/command.sh Finished genkic_ramaprepro_sampling in 33 seconds [~ 490 test (60.9452736318408%) started, 314 in queue, 24 running] Running Test rna_assemble ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_assemble/command.sh Finished loop_creation in 35 seconds [~ 491 test (61.069651741293534%) started, 313 in queue, 24 running] Running Test genkic_bin_perturbing ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_bin_perturbing/command.sh Finished cst_info in 33 seconds [~ 492 test (61.19402985074627%) started, 312 in queue, 24 running] Running Test fold_cst_new ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fold_cst_new/command.sh Finished readin_dna_rna_protein in 49 seconds [~ 493 test (61.318407960199%) started, 311 in queue, 24 running] Running Test enzscore_filter_ligand ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enzscore_filter_ligand/command.sh Finished crosslinkermover_tetrahedral_metal in 36 seconds [~ 494 test (61.44278606965174%) started, 310 in queue, 24 running] Running Test dihedral_constraint_generator ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dihedral_constraint_generator/command.sh Finished bin_perturbation in 35 seconds [~ 495 test (61.56716417910448%) started, 309 in queue, 24 running] Running Test cluster_alns ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cluster_alns/command.sh Finished database_session_resource in 39 seconds [~ 496 test (61.691542288557216%) started, 308 in queue, 24 running] Running Test add_job_pair_data ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/add_job_pair_data/command.sh Finished autosetup_metals_centroid in 35 seconds [~ 497 test (61.81592039800995%) started, 307 in queue, 24 running] Running Test StrandHelixGeometryFilter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/StrandHelixGeometryFilter/command.sh Finished RBOut in 34 seconds [~ 498 test (61.940298507462686%) started, 306 in queue, 24 running] Running Test StrandCurvatureByLevels ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/StrandCurvatureByLevels/command.sh Finished features_pdb in 42 seconds [~ 499 test (62.06467661691542%) started, 305 in queue, 24 running] Running Test SecondaryStructureFilter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/SecondaryStructureFilter/command.sh Finished make_rot_lib in 47 seconds [~ 500 test (62.18905472636816%) started, 304 in queue, 24 running] Running Test PeptideStubMover_prependRepeat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/PeptideStubMover_prependRepeat/command.sh Finished PDB_diagnostic in 38 seconds [~ 501 test (62.3134328358209%) started, 303 in queue, 24 running] Running Test OversaturatedHbondAcceptorFilter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/OversaturatedHbondAcceptorFilter/command.sh Finished DumpTrajectoryEnergy_packing in 36 seconds [~ 502 test (62.43781094527363%) started, 302 in queue, 24 running] Running Test MutateResidue_selector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/MutateResidue_selector/command.sh Finished BFactorSelector in 35 seconds [~ 503 test (62.56218905472637%) started, 301 in queue, 24 running] Running Test LoopLengthChange ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/LoopLengthChange/command.sh Finished ConsensusLoopDesign in 36 seconds [~ 504 test (62.6865671641791%) started, 300 in queue, 24 running] Running Test HelixBendFilter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/HelixBendFilter/command.sh Finished smallmover_resselector in 31 seconds [~ 505 test (62.81094527363184%) started, 299 in queue, 24 running] Running Test FilterReportAsPoseExtraScoresMover ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/FilterReportAsPoseExtraScoresMover/command.sh Finished selected_residue_count_metric in 33 seconds [~ 506 test (62.93532338308458%) started, 298 in queue, 24 running] Running Test FavorSequenceProfileMover ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/FavorSequenceProfileMover/command.sh Finished sequence_recovery in 35 seconds [~ 507 test (63.059701492537314%) started, 297 in queue, 24 running] Running Test DumpTrajectoryEnergy ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DumpTrajectoryEnergy/command.sh Finished InterfaceDdG in 53 seconds [~ 508 test (63.18407960199005%) started, 296 in queue, 24 running] Running Test AddConstraintsToCurrentConformationMover ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/AddConstraintsToCurrentConformationMover/command.sh Finished swm_protein_move_inside_coiledcoil_by_bond in 45 seconds [~ 509 test (63.308457711442784%) started, 295 in queue, 24 running] Finished swm_protein_CCDmove in 41 seconds [~ 509 test (63.308457711442784%) started, 295 in queue, 23 running] Running Test swm_rna_protonated_adenosine ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_protonated_adenosine/command.sh Running Test swa_rna_gagu_23_append_and_kic_close ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_23_append_and_kic_close/command.sh Finished rna_assemble in 38 seconds [~ 511 test (63.55721393034826%) started, 293 in queue, 24 running] Finished enzscore_filter_ligand in 33 seconds [~ 511 test (63.55721393034826%) started, 293 in queue, 23 running] Running Test swa_rna_gagu_22_prepend_and_kic_close ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_22_prepend_and_kic_close/command.sh Running Test swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide/command.sh Finished swm_rna_fourwayjunction in 52 seconds [~ 513 test (63.80597014925373%) started, 291 in queue, 24 running] Running Test swa_rna_gagu_13_chunk_combination_and_closure ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_13_chunk_combination_and_closure/command.sh Finished StrandCurvatureByLevels in 29 seconds [~ 514 test (63.930348258706466%) started, 290 in queue, 24 running] Running Test swa_rna_gagu_10_prepend_and_ccd_close ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_10_prepend_and_ccd_close/command.sh Finished add_job_pair_data in 32 seconds [~ 515 test (64.05472636815921%) started, 289 in queue, 24 running] Running Test stored_residue_subset ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/stored_residue_subset/command.sh Finished swa_rna_gagu_15_combine_long_loop_sampling in 46 seconds [~ 516 test (64.17910447761194%) started, 288 in queue, 24 running] Finished dihedral_constraint_generator in 33 seconds [~ 516 test (64.17910447761194%) started, 288 in queue, 23 running] Running Test simple_cycpep_predict_sidechain_isopeptide ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_sidechain_isopeptide/command.sh Running Test simple_cycpep_predict_terminal_disulfide_internal_permutations ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_internal_permutations/command.sh Finished SecondaryStructureFilter in 33 seconds [~ 518 test (64.42786069651741%) started, 286 in queue, 24 running] Running Test oop_dock_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/oop_dock_design/command.sh Finished StrandHelixGeometryFilter in 35 seconds [~ 519 test (64.55223880597015%) started, 285 in queue, 24 running] Running Test mp_symmetry_load ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_symmetry_load/command.sh Finished genkic_bin_perturbing in 45 seconds [~ 520 test (64.67661691542288%) started, 284 in queue, 24 running] Running Test mf_fixbb_sc ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mf_fixbb_sc/command.sh Finished fold_cst_new in 43 seconds [~ 521 test (64.80099502487562%) started, 283 in queue, 24 running] Running Test genkic_dihedral_copying ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_dihedral_copying/command.sh Finished PeptideStubMover_prependRepeat in 35 seconds [~ 522 test (64.92537313432835%) started, 282 in queue, 24 running] Running Test design_w_custom_palette-RNA ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/design_w_custom_palette-RNA/command.sh Finished OversaturatedHbondAcceptorFilter in 34 seconds [~ 523 test (65.04975124378109%) started, 281 in queue, 24 running] Running Test density_refine_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/density_refine_symm/command.sh Finished cluster_alns in 43 seconds [~ 524 test (65.17412935323384%) started, 280 in queue, 24 running] Running Test dehydro_aa_patch ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dehydro_aa_patch/command.sh Finished LoopLengthChange in 32 seconds [~ 525 test (65.29850746268657%) started, 279 in queue, 24 running] Running Test buried_area_filter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/buried_area_filter/command.sh Finished MutateResidue_selector in 34 seconds [~ 526 test (65.42288557213931%) started, 278 in queue, 24 running] Running Test ambiguous_nmr_distance_constraint ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ambiguous_nmr_distance_constraint/command.sh Finished HelixBendFilter in 33 seconds [~ 527 test (65.54726368159204%) started, 277 in queue, 24 running] Running Test SSElementSelector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/SSElementSelector/command.sh Finished FilterReportAsPoseExtraScoresMover in 32 seconds [~ 528 test (65.67164179104478%) started, 276 in queue, 24 running] Running Test symmetrical_residue_selector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symmetrical_residue_selector/command.sh Finished FavorSequenceProfileMover in 34 seconds [~ 529 test (65.79601990049751%) started, 275 in queue, 24 running] Running Test swm_build_full_model ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_build_full_model/command.sh Finished rna_design in 67 seconds [~ 530 test (65.92039800995025%) started, 274 in queue, 24 running] Running Test swm_add_rosettascripts ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_add_rosettascripts/command.sh Finished AddConstraintsToCurrentConformationMover in 32 seconds [~ 531 test (66.04477611940298%) started, 273 in queue, 24 running] Running Test swa_rna_gagu_18_rebuild_bulge ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_18_rebuild_bulge/command.sh Finished DumpTrajectoryEnergy in 34 seconds [~ 532 test (66.16915422885572%) started, 272 in queue, 24 running] Running Test swa_rna_gagu_11_append_and_ccd_close ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_11_append_and_ccd_close/command.sh Finished stored_residue_subset in 31 seconds [~ 533 test (66.29353233830845%) started, 271 in queue, 24 running] Running Test set_torsion ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/set_torsion/command.sh Finished swa_rna_gagu_23_append_and_kic_close in 39 seconds [~ 534 test (66.41791044776119%) started, 270 in queue, 24 running] Running Test referencepose_mutateresidue ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/referencepose_mutateresidue/command.sh Finished simple_cycpep_predict_sidechain_isopeptide in 34 seconds [~ 535 test (66.54228855721394%) started, 269 in queue, 24 running] Running Test pocket_measure ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pocket_measure/command.sh Finished mp_symmetry_load in 31 seconds [~ 536 test (66.66666666666667%) started, 268 in queue, 24 running] Running Test phiselector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/phiselector/command.sh Finished swa_rna_gagu_22_prepend_and_kic_close in 38 seconds [~ 537 test (66.7910447761194%) started, 267 in queue, 24 running] Running Test mp_dock ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_dock/command.sh Finished mf_fixbb_sc in 30 seconds [~ 538 test (66.91542288557214%) started, 266 in queue, 24 running] Running Test metal_setup ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/metal_setup/command.sh Finished swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide in 39 seconds [~ 539 test (67.03980099502488%) started, 265 in queue, 24 running] Running Test make_and_perturb_bundle_multirepeat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_and_perturb_bundle_multirepeat/command.sh Finished swa_rna_gagu_13_chunk_combination_and_closure in 39 seconds [~ 540 test (67.16417910447761%) started, 264 in queue, 24 running] Finished swa_rna_gagu_10_prepend_and_ccd_close in 37 seconds [~ 540 test (67.16417910447761%) started, 264 in queue, 23 running] Running Test hbondstoresidue_selector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbondstoresidue_selector/command.sh Running Test longest_continuous_polar_segment_filter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/longest_continuous_polar_segment_filter/command.sh Finished simple_cycpep_predict_terminal_disulfide_internal_permutations in 38 seconds [~ 542 test (67.41293532338308%) started, 262 in queue, 24 running] Finished genkic_dihedral_copying in 31 seconds [~ 542 test (67.41293532338308%) started, 262 in queue, 23 running] Running Test genkic_bin_setting ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_bin_setting/command.sh Running Test create_clash-based_repack_shell ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/create_clash-based_repack_shell/command.sh Finished buried_area_filter in 29 seconds [~ 544 test (67.66169154228855%) started, 260 in queue, 24 running] Running Test copy_rotamer_mover ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/copy_rotamer_mover/command.sh Finished design_w_custom_palette-RNA in 32 seconds [~ 545 test (67.7860696517413%) started, 259 in queue, 24 running] Running Test binselector_probins ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/binselector_probins/command.sh Finished dehydro_aa_patch in 32 seconds [~ 546 test (67.91044776119404%) started, 258 in queue, 24 running] Running Test binselector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/binselector/command.sh Finished ambiguous_nmr_distance_constraint in 32 seconds [~ 547 test (68.03482587064677%) started, 257 in queue, 24 running] Running Test backbonegridsampler ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backbonegridsampler/command.sh Finished SSElementSelector in 32 seconds [~ 548 test (68.1592039800995%) started, 256 in queue, 24 running] Running Test ModifyVariantTypeMover ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ModifyVariantTypeMover/command.sh Finished swm_rna_protonated_adenosine in 53 seconds [~ 549 test (68.28358208955224%) started, 255 in queue, 24 running] Running Test tna_base_pairs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/tna_base_pairs/command.sh Finished symmetrical_residue_selector in 27 seconds [~ 550 test (68.40796019900498%) started, 254 in queue, 24 running] Running Test swm_rna_move_inside_helix_by_bond ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_move_inside_helix_by_bond/command.sh Finished density_refine_symm in 38 seconds [~ 551 test (68.53233830845771%) started, 253 in queue, 24 running] Running Test surface_docking ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/surface_docking/command.sh Finished oop_dock_design in 46 seconds [~ 552 test (68.65671641791045%) started, 252 in queue, 24 running] Running Test rnp_ddg_relax_command_1 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_relax_command_1/command.sh Finished swm_build_full_model in 34 seconds [~ 553 test (68.78109452736318%) started, 251 in queue, 24 running] Finished pocket_measure in 23 seconds [~ 553 test (68.78109452736318%) started, 251 in queue, 23 running] Running Test rna_puzzle6_j67_into_p6p7rigidbody_thread1 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_puzzle6_j67_into_p6p7rigidbody_thread1/command.sh Running Test rna_denovo ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo/command.sh Finished set_torsion in 28 seconds [~ 555 test (69.02985074626865%) started, 249 in queue, 24 running] Running Test helix_from_sequence ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helix_from_sequence/command.sh Finished referencepose_mutateresidue in 28 seconds [~ 556 test (69.1542288557214%) started, 248 in queue, 24 running] Running Test helical_bundle ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle/command.sh Finished swa_rna_gagu_18_rebuild_bulge in 37 seconds [~ 557 test (69.27860696517413%) started, 247 in queue, 24 running] Running Test genkic_bin_sampling ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_bin_sampling/command.sh Finished swa_rna_gagu_11_append_and_ccd_close in 35 seconds [~ 558 test (69.40298507462687%) started, 246 in queue, 24 running] Running Test zinc_homodimer_setup ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/zinc_homodimer_setup/command.sh Finished swm_add_rosettascripts in 39 seconds [~ 559 test (69.5273631840796%) started, 245 in queue, 24 running] Running Test target_clash ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/target_clash/command.sh Finished phiselector in 29 seconds [~ 560 test (69.65174129353234%) started, 244 in queue, 24 running] Running Test swa_rna_gagu_12_helix_addition ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_12_helix_addition/command.sh Finished make_and_perturb_bundle_multirepeat in 29 seconds [~ 561 test (69.77611940298507%) started, 243 in queue, 24 running] Running Test simple_cycpep_predict_terminal_disulfide_tails ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_tails/command.sh Finished hbondstoresidue_selector in 28 seconds [~ 562 test (69.90049751243781%) started, 242 in queue, 24 running] Running Test simple_cycpep_predict_symmetric_sampling ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_symmetric_sampling/command.sh Finished genkic_bin_setting in 28 seconds [~ 563 test (70.02487562189054%) started, 241 in queue, 24 running] Running Test simple_cycpep_predict_nterm_isopeptide_lariat_tailless ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_nterm_isopeptide_lariat_tailless/command.sh Finished longest_continuous_polar_segment_filter in 30 seconds [~ 564 test (70.14925373134328%) started, 240 in queue, 24 running] Running Test simple_cycpep_predict_nterm_isopeptide_lariat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_nterm_isopeptide_lariat/command.sh Finished copy_rotamer_mover in 28 seconds [~ 565 test (70.27363184079601%) started, 239 in queue, 24 running] Running Test rna_denovo_new_FT_5P_j12_leadzyme ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_new_FT_5P_j12_leadzyme/command.sh Finished binselector_probins in 28 seconds [~ 566 test (70.39800995024876%) started, 238 in queue, 24 running] Running Test recces_turner ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/recces_turner/command.sh Finished metal_setup in 33 seconds [~ 567 test (70.5223880597015%) started, 237 in queue, 24 running] Running Test mp_mutate_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_mutate_relax/command.sh Finished backbonegridsampler in 27 seconds [~ 568 test (70.64676616915423%) started, 236 in queue, 24 running] Running Test mmtfIO_score_test ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mmtfIO_score_test/command.sh Finished binselector in 30 seconds [~ 569 test (70.77114427860697%) started, 235 in queue, 24 running] Running Test database_jd2_io ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/database_jd2_io/command.sh Finished ModifyVariantTypeMover in 29 seconds [~ 570 test (70.8955223880597%) started, 234 in queue, 24 running] Running Test database_jd2_compact_io ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/database_jd2_compact_io/command.sh Finished mp_dock in 38 seconds [~ 571 test (71.01990049751244%) started, 233 in queue, 24 running] Running Test abinitio ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/abinitio/command.sh Finished create_clash-based_repack_shell in 39 seconds [~ 572 test (71.14427860696517%) started, 232 in queue, 24 running] Running Test swm_rna_nickedhelix ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_nickedhelix/command.sh Finished tna_base_pairs in 33 seconds [~ 573 test (71.26865671641791%) started, 231 in queue, 24 running] Running Test simple_cycpep_predict_sidechain_isopeptide_reverse ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_sidechain_isopeptide_reverse/command.sh Finished rnp_ddg_relax_command_1 in 30 seconds [~ 574 test (71.39303482587064%) started, 230 in queue, 24 running] Running Test score_jd2 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/score_jd2/command.sh Finished surface_docking in 38 seconds [~ 575 test (71.51741293532338%) started, 229 in queue, 24 running] Running Test mp_range_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_range_relax/command.sh Finished zinc_homodimer_setup in 24 seconds [~ 576 test (71.64179104477611%) started, 228 in queue, 24 running] Running Test molfile_to_params ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/molfile_to_params/command.sh Finished swm_rna_move_inside_helix_by_bond in 41 seconds [~ 577 test (71.76616915422886%) started, 227 in queue, 24 running] Running Test hshash_utils ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hshash_utils/command.sh Finished helical_bundle in 27 seconds [~ 578 test (71.8905472636816%) started, 226 in queue, 24 running] Running Test glycosylation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycosylation/command.sh Finished simple_cycpep_predict_terminal_disulfide_tails in 23 seconds [~ 579 test (72.01492537313433%) started, 225 in queue, 24 running] Running Test InterfaceAnalyzer_resfile ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_resfile/command.sh Finished genkic_bin_sampling in 28 seconds [~ 580 test (72.13930348258707%) started, 224 in queue, 24 running] Running Test InterfaceAnalyzer_bothpack ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_bothpack/command.sh Finished helix_from_sequence in 32 seconds [~ 581 test (72.2636815920398%) started, 223 in queue, 24 running] Running Test unfolded_state_energy_calc ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/unfolded_state_energy_calc/command.sh Finished simple_cycpep_predict_symmetric_sampling in 26 seconds [~ 582 test (72.38805970149254%) started, 222 in queue, 24 running] Running Test stepwise_lores ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/stepwise_lores/command.sh Finished target_clash in 32 seconds [~ 583 test (72.51243781094527%) started, 221 in queue, 24 running] Running Test simple_cycpep_predict_cterm_isopeptide_lariat_tailless ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_cterm_isopeptide_lariat_tailless/command.sh Finished swa_rna_gagu_12_helix_addition in 31 seconds [~ 584 test (72.636815920398%) started, 220 in queue, 24 running] Running Test rna_predict_chem_map ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_predict_chem_map/command.sh Finished simple_cycpep_predict_nterm_isopeptide_lariat in 29 seconds [~ 585 test (72.76119402985074%) started, 219 in queue, 24 running] Running Test rb_recces ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rb_recces/command.sh Finished glycosylation in 10 seconds [~ 586 test (72.88557213930348%) started, 218 in queue, 24 running] Running Test mpi_multistate_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpi_multistate_design/command.sh Finished mmtfIO_score_test in 28 seconds [~ 587 test (73.00995024875621%) started, 217 in queue, 24 running] Running Test mp_mutate_repack ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_mutate_repack/command.sh Finished rna_puzzle6_j67_into_p6p7rigidbody_thread1 in 41 seconds [~ 588 test (73.13432835820896%) started, 216 in queue, 24 running] Running Test gen_apo_grids ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/gen_apo_grids/command.sh Finished simple_cycpep_predict_nterm_isopeptide_lariat_tailless in 32 seconds [~ 589 test (73.2587064676617%) started, 215 in queue, 24 running] Running Test fold_and_dock ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fold_and_dock/command.sh Finished recces_turner in 32 seconds [~ 590 test (73.38308457711443%) started, 214 in queue, 24 running] Running Test energy_based_clustering_alpha_aa_scorefile ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/energy_based_clustering_alpha_aa_scorefile/command.sh Finished mp_mutate_relax in 32 seconds [~ 591 test (73.50746268656717%) started, 213 in queue, 24 running] Running Test docking_prepack ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_prepack/command.sh Finished rna_denovo_new_FT_5P_j12_leadzyme in 34 seconds [~ 592 test (73.6318407960199%) started, 212 in queue, 24 running] Running Test broker_membrane ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/broker_membrane/command.sh Finished molfile_to_params in 17 seconds [~ 593 test (73.75621890547264%) started, 211 in queue, 24 running] Running Test blob_finder ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/blob_finder/command.sh Finished score_jd2 in 25 seconds [~ 594 test (73.88059701492537%) started, 210 in queue, 24 running] Running Test trRosetta_test_predict_ubiquitin_cst_file_write_only ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosetta_test_predict_ubiquitin_cst_file_write_only/command.sh Finished hshash_utils in 22 seconds [~ 595 test (74.0049751243781%) started, 209 in queue, 24 running] Running Test trRosetta_test_predict_ubiquitin_cst_file_write ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosetta_test_predict_ubiquitin_cst_file_write/command.sh Finished abinitio in 36 seconds [~ 596 test (74.12935323383084%) started, 208 in queue, 24 running] No correct command.sh file found for tensorflow_manager. Skipping. Running Test trRosetta_test_predict_ubiquitin ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosetta_test_predict_ubiquitin/command.sh Finished unfolded_state_energy_calc in 20 seconds [~ 598 test (74.37810945273633%) started, 206 in queue, 24 running] Running Test swm_rna_loop_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_loop_design/command.sh Finished simple_cycpep_predict_sidechain_isopeptide_reverse in 33 seconds [~ 599 test (74.50248756218906%) started, 205 in queue, 24 running] Running Test swm_protein_from_scratch ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_protein_from_scratch/command.sh Finished database_jd2_io in 41 seconds [~ 600 test (74.6268656716418%) started, 204 in queue, 24 running] Running Test simple_cycpep_predict_cterm_isopeptide_lariat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_cterm_isopeptide_lariat/command.sh Finished rna_predict_chem_map in 16 seconds [~ 601 test (74.75124378109453%) started, 203 in queue, 24 running] Finished fold_and_dock in 13 seconds [~ 601 test (74.75124378109453%) started, 203 in queue, 23 running] Running Test mp_transform_optimize ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_transform_optimize/command.sh Running Test rna_puzzle6_U75G76A77_on_thread1 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_puzzle6_U75G76A77_on_thread1/command.sh Finished stepwise_lores in 22 seconds [~ 603 test (75.0%) started, 201 in queue, 24 running] Running Test assemble_domains_jd2 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/assemble_domains_jd2/command.sh Finished InterfaceAnalyzer_resfile in 25 seconds [~ 604 test (75.12437810945273%) started, 200 in queue, 24 running] No correct command.sh file found for tensorflow_simple_model_load_and_evaluate. Skipping. No correct command.sh file found for tensorflow_connection_test. Skipping. Running Test InterfaceAnalyzer_prepack ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_prepack/command.sh Finished database_jd2_compact_io in 41 seconds [~ 607 test (75.49751243781094%) started, 197 in queue, 24 running] Finished InterfaceAnalyzer_bothpack in 25 seconds [~ 608 test (75.62189054726367%) started, 196 in queue, 24 running] Running Test swa_rna_gagu_17_append_floating_base ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_17_append_floating_base/command.sh Running Test swa_rna_gagu_03_append_to_silent ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_03_append_to_silent/command.sh Finished trRosetta_test_predict_ubiquitin_cst_file_write_only in 10 seconds [~ 609 test (75.74626865671642%) started, 195 in queue, 24 running] Running Test simple_cycpep_predict_nmethyl ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_nmethyl/command.sh Finished mp_range_relax in 30 seconds [~ 610 test (75.87064676616916%) started, 194 in queue, 24 running] Running Test rna_motif ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_motif/command.sh Finished swm_rna_nickedhelix in 39 seconds [~ 611 test (75.9950248756219%) started, 193 in queue, 24 running] Running Test restype_converter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/restype_converter/command.sh Finished trRosetta_test_predict_ubiquitin_cst_file_write in 10 seconds [~ 612 test (76.11940298507463%) started, 192 in queue, 24 running] Running Test phosphorylation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/phosphorylation/command.sh Finished mp_mutate_repack in 22 seconds [~ 613 test (76.24378109452736%) started, 191 in queue, 24 running] Running Test pepspec_anchor_dock ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pepspec_anchor_dock/command.sh Finished trRosetta_test_predict_ubiquitin in 10 seconds [~ 614 test (76.3681592039801%) started, 190 in queue, 24 running] Running Test mp_dock_setup ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_dock_setup/command.sh Finished blob_finder in 18 seconds [~ 615 test (76.49253731343283%) started, 189 in queue, 24 running] Running Test ligand_motif_discovery ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_motif_discovery/command.sh Finished energy_based_clustering_alpha_aa_scorefile in 21 seconds [~ 616 test (76.61691542288557%) started, 188 in queue, 24 running] Running Test docking_low_res ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_low_res/command.sh Finished simple_cycpep_predict_cterm_isopeptide_lariat_tailless in 27 seconds [~ 617 test (76.7412935323383%) started, 187 in queue, 24 running] Running Test InterfaceAnalyzer_tracer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_tracer/command.sh Finished gen_apo_grids in 25 seconds [~ 618 test (76.86567164179104%) started, 186 in queue, 24 running] Running Test InterfaceAnalyzer_allscores ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_allscores/command.sh Finished rb_recces in 27 seconds [~ 619 test (76.99004975124379%) started, 185 in queue, 24 running] Running Test swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump/command.sh Finished restype_converter in 8 seconds [~ 620 test (77.11442786069652%) started, 184 in queue, 24 running] Running Test swa_rna_gagu_20_append_floating_base_by_jump ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_20_append_floating_base_by_jump/command.sh Finished broker_membrane in 24 seconds [~ 621 test (77.23880597014926%) started, 183 in queue, 24 running] Running Test swa_rna_gagu_08_append_dinucleotide ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_08_append_dinucleotide/command.sh Finished mpi_multistate_design in 30 seconds [~ 622 test (77.363184079602%) started, 182 in queue, 24 running] Running Test swa_rna_gagu_07_prepend_dinucleotide ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_07_prepend_dinucleotide/command.sh Finished docking_prepack in 29 seconds [~ 623 test (77.48756218905473%) started, 181 in queue, 24 running] Running Test swa_rna_gagu_06_append_to_3primeterminus ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_06_append_to_3primeterminus/command.sh Finished swm_rna_loop_design in 22 seconds [~ 624 test (77.61194029850746%) started, 180 in queue, 24 running] Running Test swa_rna_gagu_05_prepend_to_5primeterminus ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_05_prepend_to_5primeterminus/command.sh Finished simple_cycpep_predict_nmethyl in 19 seconds [~ 625 test (77.7363184079602%) started, 179 in queue, 24 running] Running Test swa_rna_gagu_02_prepend ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_02_prepend/command.sh Finished swa_rna_gagu_17_append_floating_base in 21 seconds [~ 626 test (77.86069651741293%) started, 178 in queue, 24 running] Running Test swa_rna_gagu_01_append ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_01_append/command.sh Finished swm_protein_from_scratch in 23 seconds [~ 627 test (77.98507462686567%) started, 177 in queue, 24 running] Running Test simple_cycpep_predict_terminal_disulfide ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide/command.sh Finished rna_motif in 20 seconds [~ 628 test (78.1094527363184%) started, 176 in queue, 24 running] Running Test simple_cycpep_predict_lanthionine ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_lanthionine/command.sh Finished InterfaceAnalyzer_prepack in 23 seconds [~ 629 test (78.23383084577114%) started, 175 in queue, 24 running] Running Test rna_puzzle5_p2_GAAA_mini ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_puzzle5_p2_GAAA_mini/command.sh Finished swa_rna_gagu_03_append_to_silent in 23 seconds [~ 630 test (78.35820895522389%) started, 174 in queue, 24 running] Running Test rna_denovo_grid_vdw ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_grid_vdw/command.sh Finished phosphorylation in 18 seconds [~ 631 test (78.48258706467662%) started, 173 in queue, 24 running] Running Test orbitals ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/orbitals/command.sh Finished mp_transform_optimize in 26 seconds [~ 632 test (78.60696517412936%) started, 172 in queue, 24 running] Running Test metalloprotein_broker ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/metalloprotein_broker/command.sh Finished simple_cycpep_predict_cterm_isopeptide_lariat in 26 seconds [~ 633 test (78.73134328358209%) started, 171 in queue, 24 running] Finished assemble_domains_jd2 in 25 seconds [~ 633 test (78.73134328358209%) started, 171 in queue, 23 running] Running Test jscore ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jscore/command.sh Running Test hotspot_stub_constraints ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hotspot_stub_constraints/command.sh Finished rna_puzzle6_U75G76A77_on_thread1 in 28 seconds [~ 635 test (78.98009950248756%) started, 169 in queue, 24 running] Running Test cmaes_minimizer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cmaes_minimizer/command.sh Finished pepspec_anchor_dock in 21 seconds [~ 636 test (79.1044776119403%) started, 168 in queue, 24 running] Running Test SID_rescore ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/SID_rescore/command.sh Finished InterfaceAnalyzer_tracer in 20 seconds [~ 637 test (79.22885572139303%) started, 167 in queue, 24 running] Running Test InterfaceAnalyzer_ligand ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_ligand/command.sh Finished swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump in 18 seconds [~ 638 test (79.35323383084577%) started, 166 in queue, 24 running] Running Test swm_rna_move_align_dock ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_move_align_dock/command.sh Finished docking_low_res in 21 seconds [~ 639 test (79.4776119402985%) started, 165 in queue, 24 running] Finished swa_rna_gagu_20_append_floating_base_by_jump in 18 seconds [~ 639 test (79.4776119402985%) started, 165 in queue, 23 running] Running Test swa_rna_gagu_19_prepend_floating_base_by_jump ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_19_prepend_floating_base_by_jump/command.sh Running Test struc_set_fragment_picker ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/struc_set_fragment_picker/command.sh Finished InterfaceAnalyzer_allscores in 20 seconds [~ 641 test (79.72636815920399%) started, 163 in queue, 24 running] Running Test sequence_tolerance ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sequence_tolerance/command.sh Finished swa_rna_gagu_08_append_dinucleotide in 18 seconds [~ 642 test (79.85074626865672%) started, 162 in queue, 24 running] Running Test rna_minimize ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_minimize/command.sh Finished ligand_motif_discovery in 24 seconds [~ 643 test (79.97512437810946%) started, 161 in queue, 24 running] Running Test rna_helix ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_helix/command.sh Finished swa_rna_gagu_07_prepend_dinucleotide in 18 seconds [~ 644 test (80.09950248756219%) started, 160 in queue, 24 running] Running Test phosphonate ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/phosphonate/command.sh Finished mp_dock_setup in 25 seconds [~ 645 test (80.22388059701493%) started, 159 in queue, 24 running] Running Test output_schema ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/output_schema/command.sh Finished swa_rna_gagu_06_append_to_3primeterminus in 19 seconds [~ 646 test (80.34825870646766%) started, 158 in queue, 24 running] Running Test ligand_motif_identification ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_motif_identification/command.sh Finished metalloprotein_broker in 12 seconds [~ 647 test (80.4726368159204%) started, 157 in queue, 24 running] Running Test identify_cdr_clusters ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/identify_cdr_clusters/command.sh Finished swa_rna_gagu_05_prepend_to_5primeterminus in 18 seconds [~ 648 test (80.59701492537313%) started, 156 in queue, 24 running] Running Test energy_based_clustering_alpha_aa_dihedral ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/energy_based_clustering_alpha_aa_dihedral/command.sh Finished swa_rna_gagu_02_prepend in 18 seconds [~ 649 test (80.72139303482587%) started, 155 in queue, 24 running] Running Test duplicate_header_guards ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/duplicate_header_guards/command.sh Finished simple_cycpep_predict_terminal_disulfide in 18 seconds [~ 650 test (80.8457711442786%) started, 154 in queue, 24 running] Running Test cartesianddg ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cartesianddg/command.sh Finished swa_rna_gagu_01_append in 19 seconds [~ 651 test (80.97014925373135%) started, 153 in queue, 24 running] Running Test antibody_numbering_converter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_numbering_converter/command.sh Finished rna_denovo_grid_vdw in 17 seconds [~ 652 test (81.09452736318408%) started, 152 in queue, 24 running] Running Test ProQ ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ProQ/command.sh Finished simple_cycpep_predict_lanthionine in 19 seconds [~ 653 test (81.21890547263682%) started, 151 in queue, 24 running] Finished duplicate_header_guards in 3 seconds [~ 653 test (81.21890547263682%) started, 151 in queue, 23 running] Running Test swm_protein_preminimize ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_protein_preminimize/command.sh Running Test swa_protein_cluster ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_cluster/command.sh Finished orbitals in 20 seconds [~ 655 test (81.46766169154229%) started, 149 in queue, 24 running] Finished hotspot_stub_constraints in 19 seconds [~ 655 test (81.46766169154229%) started, 149 in queue, 23 running] Running Test rna_ribosome_tether ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_ribosome_tether/command.sh Running Test rna_denovo_bps ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_bps/command.sh Finished jscore in 20 seconds [~ 657 test (81.71641791044776%) started, 147 in queue, 24 running] Running Test pymol_cif ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pymol_cif/command.sh Finished struc_set_fragment_picker in 16 seconds [~ 658 test (81.8407960199005%) started, 146 in queue, 24 running] Running Test pwsho ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pwsho/command.sh Finished SID_rescore in 18 seconds [~ 659 test (81.96517412935323%) started, 145 in queue, 24 running] Running Test per_residue_energies ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/per_residue_energies/command.sh Finished swa_rna_gagu_19_prepend_floating_base_by_jump in 18 seconds [~ 660 test (82.08955223880596%) started, 144 in queue, 24 running] Running Test mutate ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mutate/command.sh Finished InterfaceAnalyzer_ligand in 19 seconds [~ 661 test (82.2139303482587%) started, 143 in queue, 24 running] Running Test mp_vis_emb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_vis_emb/command.sh Finished cmaes_minimizer in 21 seconds [~ 662 test (82.33830845771145%) started, 142 in queue, 24 running] Running Test mp_interface_statistics ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_interface_statistics/command.sh Finished rna_puzzle5_p2_GAAA_mini in 24 seconds [~ 663 test (82.46268656716418%) started, 141 in queue, 24 running] Running Test mg_modeler ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mg_modeler/command.sh Finished sequence_tolerance in 19 seconds [~ 664 test (82.58706467661692%) started, 140 in queue, 24 running] Finished phosphonate in 18 seconds [~ 664 test (82.58706467661692%) started, 140 in queue, 23 running] Finished output_schema in 17 seconds [~ 664 test (82.58706467661692%) started, 140 in queue, 22 running] Running Test jrelax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jrelax/command.sh Running Test interface_energy ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/interface_energy/command.sh Running Test ig_dump ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ig_dump/command.sh Finished swm_rna_move_align_dock in 22 seconds [~ 667 test (82.96019900497512%) started, 137 in queue, 24 running] Running Test glycan_clash_check ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycan_clash_check/command.sh Finished ligand_motif_identification in 16 seconds [~ 668 test (83.08457711442786%) started, 136 in queue, 24 running] Running Test geometric_solvation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/geometric_solvation/command.sh Finished rna_helix in 21 seconds [~ 669 test (83.2089552238806%) started, 135 in queue, 24 running] Running Test gen_lig_grids ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/gen_lig_grids/command.sh Finished rna_minimize in 22 seconds [~ 670 test (83.33333333333333%) started, 134 in queue, 24 running] Running Test fragmentpicker_integration_demo ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fragmentpicker_integration_demo/command.sh Finished energy_based_clustering_alpha_aa_dihedral in 15 seconds [~ 671 test (83.45771144278606%) started, 133 in queue, 24 running] Running Test extract_atomtree_diffs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/extract_atomtree_diffs/command.sh Finished identify_cdr_clusters in 19 seconds [~ 672 test (83.58208955223881%) started, 132 in queue, 24 running] Finished swa_protein_cluster in 15 seconds [~ 672 test (83.58208955223881%) started, 132 in queue, 23 running] Running Test erraser_minimize ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/erraser_minimize/command.sh Running Test energy_based_clustering_alpha_aa_bin_analysis ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/energy_based_clustering_alpha_aa_bin_analysis/command.sh Finished ProQ in 17 seconds [~ 674 test (83.83084577114428%) started, 130 in queue, 24 running] Finished swm_protein_preminimize in 15 seconds [~ 674 test (83.83084577114428%) started, 130 in queue, 23 running] Running Test docking_local_refine_min ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_local_refine_min/command.sh Running Test energy_based_clustering_alpha_aa ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/energy_based_clustering_alpha_aa/command.sh Finished rna_ribosome_tether in 14 seconds [~ 676 test (84.07960199004975%) started, 128 in queue, 24 running] Running Test distances ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/distances/command.sh Finished rna_denovo_bps in 14 seconds [~ 677 test (84.20398009950249%) started, 127 in queue, 24 running] Running Test density_tools ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/density_tools/command.sh Finished cartesianddg in 19 seconds [~ 678 test (84.32835820895522%) started, 126 in queue, 24 running] Running Test constel ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/constel/command.sh Finished pymol_cif in 14 seconds [~ 679 test (84.45273631840796%) started, 125 in queue, 24 running] Running Test coenzymes ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/coenzymes/command.sh Finished antibody_numbering_converter in 20 seconds [~ 680 test (84.57711442786069%) started, 124 in queue, 24 running] Running Test cl_complex_rescore ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cl_complex_rescore/command.sh Finished per_residue_energies in 15 seconds [~ 681 test (84.70149253731343%) started, 123 in queue, 24 running] Running Test c-term_conjugation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/c-term_conjugation/command.sh Finished mutate in 13 seconds [~ 682 test (84.82587064676616%) started, 122 in queue, 24 running] Running Test DARC_sampling_on_the_fly ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DARC_sampling_on_the_fly/command.sh Finished mp_interface_statistics in 15 seconds [~ 683 test (84.95024875621891%) started, 121 in queue, 24 running] Running Test DARC_make_ray_files ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DARC_make_ray_files/command.sh Finished mp_vis_emb in 15 seconds [~ 684 test (85.07462686567165%) started, 120 in queue, 24 running] Running Test swm_rna_move_two_strands ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_move_two_strands/command.sh Finished jrelax in 14 seconds [~ 685 test (85.19900497512438%) started, 119 in queue, 24 running] Running Test sweep_respair_energies ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sweep_respair_energies/command.sh Finished mg_modeler in 16 seconds [~ 686 test (85.32338308457712%) started, 118 in queue, 24 running] Finished glycan_clash_check in 13 seconds [~ 686 test (85.32338308457712%) started, 118 in queue, 23 running] Running Test swa_rna_loop_sampler ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_loop_sampler/command.sh Running Test site_constraint ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/site_constraint/command.sh Finished interface_energy in 14 seconds [~ 688 test (85.57213930348259%) started, 116 in queue, 24 running] Finished ig_dump in 14 seconds [~ 688 test (85.57213930348259%) started, 116 in queue, 23 running] Running Test shobuns ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/shobuns/command.sh Running Test rotamer_recovery_compare_two_structures ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rotamer_recovery_compare_two_structures/command.sh Finished fragmentpicker_integration_demo in 12 seconds [~ 690 test (85.82089552238806%) started, 114 in queue, 24 running] Running Test rna_score ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_score/command.sh Finished pwsho in 21 seconds [~ 691 test (85.94527363184079%) started, 113 in queue, 24 running] Running Test rna_denovo_bps_helix_ends ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_bps_helix_ends/command.sh Finished geometric_solvation in 15 seconds [~ 692 test (86.06965174129353%) started, 112 in queue, 24 running] Running Test rna_denovo_bps_fixed_ends ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_bps_fixed_ends/command.sh Finished gen_lig_grids in 15 seconds [~ 693 test (86.19402985074628%) started, 111 in queue, 24 running] Running Test read_polymeric_components ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/read_polymeric_components/command.sh Finished extract_atomtree_diffs in 16 seconds [~ 694 test (86.31840796019901%) started, 110 in queue, 24 running] Running Test pocket_suggest_targets ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pocket_suggest_targets/command.sh grep: full_minimize_temp_1.out: No such file or directory Finished erraser_minimize in 14 seconds [~ 695 test (86.44278606965175%) started, 109 in queue, 24 running] Running Test noe_assignment ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/noe_assignment/command.sh Finished rna_denovo in 130 seconds [~ 696 test (86.56716417910448%) started, 108 in queue, 24 running] Finished c-term_conjugation in 11 seconds [~ 696 test (86.56716417910448%) started, 108 in queue, 23 running] Running Test mp_transform ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_transform/command.sh Running Test mp_score_jd2 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_score_jd2/command.sh Finished energy_based_clustering_alpha_aa_bin_analysis in 15 seconds [~ 698 test (86.81592039800995%) started, 106 in queue, 24 running] Running Test mp_dock_prepack ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_dock_prepack/command.sh Finished energy_based_clustering_alpha_aa in 15 seconds [~ 699 test (86.94029850746269%) started, 105 in queue, 24 running] Finished distances in 14 seconds [~ 699 test (86.94029850746269%) started, 105 in queue, 23 running] Running Test measure_lcaa_radii ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/measure_lcaa_radii/command.sh Running Test fragment_picker ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fragment_picker/command.sh Finished site_constraint in 9 seconds [~ 701 test (87.18905472636816%) started, 103 in queue, 24 running] Running Test fix_alignment_to_match_pdb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fix_alignment_to_match_pdb/command.sh Finished docking_local_refine_min in 16 seconds [~ 702 test (87.31343283582089%) started, 102 in queue, 24 running] Running Test cs_rosetta_rna ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cs_rosetta_rna/command.sh Finished constel in 14 seconds [~ 703 test (87.43781094527363%) started, 101 in queue, 24 running] Running Test cluster ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cluster/command.sh Finished coenzymes in 15 seconds [~ 704 test (87.56218905472637%) started, 100 in queue, 24 running] Finished sweep_respair_energies in 10 seconds [~ 704 test (87.56218905472637%) started, 100 in queue, 23 running] Running Test buried_unsat_kinemage ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/buried_unsat_kinemage/command.sh Running Test trRosettaProtocolMover_rosettascripts_diskwrite_only ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosettaProtocolMover_rosettascripts_diskwrite_only/command.sh Finished density_tools in 16 seconds [~ 706 test (87.81094527363184%) started, 98 in queue, 24 running] Running Test trRosettaProtocolMover_rosettascripts_diskwrite ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosettaProtocolMover_rosettascripts_diskwrite/command.sh Finished DARC_make_ray_files in 12 seconds [~ 707 test (87.93532338308458%) started, 97 in queue, 24 running] Running Test trRosettaProtocolMover_rosettascripts ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosettaProtocolMover_rosettascripts/command.sh Finished cl_complex_rescore in 16 seconds [~ 708 test (88.05970149253731%) started, 96 in queue, 24 running] Running Test rna_denovo_new_FT_rna_two_chains ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_new_FT_rna_two_chains/command.sh Finished swm_rna_move_two_strands in 13 seconds [~ 709 test (88.18407960199005%) started, 95 in queue, 24 running] Running Test pH_mode ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pH_mode/command.sh Finished read_polymeric_components in 9 seconds [~ 710 test (88.30845771144278%) started, 94 in queue, 24 running] Running Test mpil_find_pore_bbarrel ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpil_find_pore_bbarrel/command.sh Finished rotamer_recovery_compare_two_structures in 13 seconds [~ 711 test (88.43283582089552%) started, 93 in queue, 24 running] Running Test mp_loadtime ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_loadtime/command.sh Finished swa_rna_loop_sampler in 14 seconds [~ 712 test (88.55721393034825%) started, 92 in queue, 24 running] Running Test mg_modeler_lores ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mg_modeler_lores/command.sh Finished shobuns in 14 seconds [~ 713 test (88.68159203980099%) started, 91 in queue, 24 running] Running Test match_1c2t ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/match_1c2t/command.sh Finished rna_score in 13 seconds [~ 714 test (88.80597014925372%) started, 90 in queue, 24 running] Running Test make_mainchain_potential_symm_preproline ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_mainchain_potential_symm_preproline/command.sh Finished rna_denovo_bps_helix_ends in 12 seconds [~ 715 test (88.93034825870647%) started, 89 in queue, 24 running] Running Test make_mainchain_potential_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_mainchain_potential_symm/command.sh Finished DARC_sampling_on_the_fly in 18 seconds [~ 716 test (89.05472636815921%) started, 88 in queue, 24 running] Running Test make_exemplar ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_exemplar/command.sh Finished rna_denovo_bps_fixed_ends in 13 seconds [~ 717 test (89.17910447761194%) started, 87 in queue, 24 running] Running Test features_database_schema ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features_database_schema/command.sh Finished noe_assignment in 10 seconds [~ 718 test (89.30348258706468%) started, 86 in queue, 24 running] Running Test drrafter_setup_ribosome_test ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup_ribosome_test/command.sh Finished pocket_suggest_targets in 14 seconds [~ 719 test (89.42786069651741%) started, 85 in queue, 24 running] Running Test drrafter_setup_real_test_H_no_init ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup_real_test_H_no_init/command.sh Finished mpil_find_pore_bbarrel in 8 seconds [~ 720 test (89.55223880597015%) started, 84 in queue, 24 running] Running Test drrafter_setup_real_test_H ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup_real_test_H/command.sh Finished mp_loadtime in 8 seconds [~ 721 test (89.67661691542288%) started, 83 in queue, 24 running] Running Test contactMap ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/contactMap/command.sh Finished mp_transform in 13 seconds [~ 722 test (89.80099502487562%) started, 82 in queue, 24 running] Running Test cluster_filter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cluster_filter/command.sh Finished trRosettaProtocolMover_rosettascripts_diskwrite_only in 12 seconds [~ 723 test (89.92537313432835%) started, 81 in queue, 24 running] Running Test ResidueDisorder ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ResidueDisorder/command.sh Finished cs_rosetta_rna in 14 seconds [~ 724 test (90.04975124378109%) started, 80 in queue, 24 running] Finished trRosettaProtocolMover_rosettascripts_diskwrite in 13 seconds [~ 724 test (90.04975124378109%) started, 80 in queue, 23 running] Running Test RescorePDDF ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/RescorePDDF/command.sh Running Test template_features ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/template_features/command.sh Finished fix_alignment_to_match_pdb in 14 seconds [~ 726 test (90.29850746268657%) started, 78 in queue, 24 running] Running Test super_aln ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/super_aln/command.sh Finished mp_dock_prepack in 15 seconds [~ 727 test (90.42288557213931%) started, 77 in queue, 24 running] Running Test silent2frag ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/silent2frag/command.sh Finished mp_score_jd2 in 15 seconds [~ 728 test (90.54726368159204%) started, 76 in queue, 24 running] Finished measure_lcaa_radii in 15 seconds [~ 728 test (90.54726368159204%) started, 76 in queue, 23 running] Running Test rna_screen_phosphates ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_screen_phosphates/command.sh Running Test rings ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rings/command.sh Finished cluster in 14 seconds [~ 730 test (90.79601990049751%) started, 74 in queue, 24 running] Finished trRosettaProtocolMover_rosettascripts in 12 seconds [~ 730 test (90.79601990049751%) started, 74 in queue, 23 running] Running Test nucleobase_sample_around ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/nucleobase_sample_around/command.sh Running Test non-canonical_connectivities ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/non-canonical_connectivities/command.sh Finished fragment_picker in 15 seconds [~ 732 test (91.04477611940298%) started, 72 in queue, 24 running] Finished buried_unsat_kinemage in 14 seconds [~ 732 test (91.04477611940298%) started, 72 in queue, 23 running] Finished pH_mode in 11 seconds [~ 732 test (91.04477611940298%) started, 72 in queue, 22 running] Running Test motif_extraction ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/motif_extraction/command.sh Running Test code_template_tests_citations ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/code_template_tests_citations/command.sh Running Test ld_converter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ld_converter/command.sh Finished make_mainchain_potential_symm_preproline in 10 seconds [~ 735 test (91.41791044776119%) started, 69 in queue, 24 running] Running Test centroid_disulfide_scores ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/centroid_disulfide_scores/command.sh Finished rna_denovo_new_FT_rna_two_chains in 13 seconds [~ 736 test (91.54228855721394%) started, 68 in queue, 24 running] Finished drrafter_setup_ribosome_test in 7 seconds [~ 736 test (91.54228855721394%) started, 68 in queue, 23 running] Running Test test_d_l_readin ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/test_d_l_readin/command.sh Running Test test_idealize ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/test_idealize/command.sh Finished make_mainchain_potential_symm in 10 seconds [~ 738 test (91.7910447761194%) started, 66 in queue, 24 running] Running Test select_best_unique_ligand_poses ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/select_best_unique_ligand_poses/command.sh Finished make_exemplar in 10 seconds [~ 739 test (91.91542288557214%) started, 65 in queue, 24 running] Running Test rosetta_scripts_info ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosetta_scripts_info/command.sh Finished mg_modeler_lores in 13 seconds [~ 740 test (92.03980099502488%) started, 64 in queue, 24 running] Running Test rna_minimize_6D_loop_close ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_minimize_6D_loop_close/command.sh Finished drrafter_setup_real_test_H_no_init in 7 seconds [~ 741 test (92.16417910447761%) started, 63 in queue, 24 running] Running Test r_pdb2top ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/r_pdb2top/command.sh Finished drrafter_setup_real_test_H in 6 seconds [~ 742 test (92.28855721393035%) started, 62 in queue, 24 running] Running Test per_residue_sc_sasa ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/per_residue_sc_sasa/command.sh Finished contactMap in 7 seconds [~ 743 test (92.41293532338308%) started, 61 in queue, 24 running] Running Test oop_create ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/oop_create/command.sh Finished test_d_l_readin in 4 seconds [~ 744 test (92.53731343283582%) started, 60 in queue, 24 running] Running Test mpil_load_implicit_lipids ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpil_load_implicit_lipids/command.sh Finished match_1c2t in 15 seconds [~ 745 test (92.66169154228855%) started, 59 in queue, 24 running] Running Test mpil_find_pore_ahelical ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpil_find_pore_ahelical/command.sh Finished template_features in 6 seconds [~ 746 test (92.7860696517413%) started, 58 in queue, 24 running] Finished super_aln in 6 seconds [~ 746 test (92.7860696517413%) started, 58 in queue, 23 running] Running Test minimize_6Dloopclose ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/minimize_6Dloopclose/command.sh Running Test fit_helixparams_rms ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fit_helixparams_rms/command.sh Finished centroid_disulfide_scores in 5 seconds [~ 748 test (93.03482587064677%) started, 56 in queue, 24 running] ‘database/citations/rosetta_citations.txt’ -> ‘database/citations/rosetta_citations.original.txt’ First script ran successfully. Second script ran successfully. Output matches expectation. Running Test drrafter_error_estimation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_error_estimation/command.sh Finished code_template_tests_citations in 6 seconds [~ 749 test (93.1592039800995%) started, 55 in queue, 24 running] Running Test cstfile_to_theozyme_pdb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cstfile_to_theozyme_pdb/command.sh Finished silent2frag in 7 seconds [~ 750 test (93.28358208955224%) started, 54 in queue, 24 running] Finished rings in 7 seconds [~ 750 test (93.28358208955224%) started, 54 in queue, 23 running] Finished select_best_unique_ligand_poses in 5 seconds [~ 750 test (93.28358208955224%) started, 54 in queue, 22 running] Running Test code_template_tests_src ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/code_template_tests_src/command.sh Running Test angle_recovery_stats ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/angle_recovery_stats/command.sh Running Test N-terminal_acetylation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/N-terminal_acetylation/command.sh Finished test_idealize in 7 seconds [~ 753 test (93.65671641791045%) started, 51 in queue, 24 running] Running Test DNA_methylation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DNA_methylation/command.sh Finished rna_minimize_6D_loop_close in 5 seconds [~ 754 test (93.78109452736318%) started, 50 in queue, 24 running] Running Test DARC_shapeonly ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DARC_shapeonly/command.sh Finished ResidueDisorder in 9 seconds [~ 755 test (93.90547263681592%) started, 49 in queue, 24 running] Finished ld_converter in 8 seconds [~ 755 test (93.90547263681592%) started, 49 in queue, 23 running] Running Test DARC_electrostatics ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DARC_electrostatics/command.sh Running Test CCS_PARCS ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/CCS_PARCS/command.sh test_general test_abstract test_mover test_ws_energy_method test_1b_energy_method test_2b_energy_method test_task_operation test_features_reporter test_residue_selector test_residue_selector_in_core test_crosslinker_mover_helper test_util Finished per_residue_sc_sasa in 5 seconds [~ 757 test (94.1542288557214%) started, 47 in queue, 24 running] Finished code_template_tests_src in 2 seconds [~ 757 test (94.1542288557214%) started, 47 in queue, 23 running] Running Test swa_rna_loop_clusterer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_loop_clusterer/command.sh Running Test CCD_loop_closure ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/CCD_loop_closure/command.sh Finished nucleobase_sample_around in 9 seconds [~ 759 test (94.40298507462687%) started, 45 in queue, 24 running] Running Test swa_rna_gagu_14_combine_long_loop_filtering ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_14_combine_long_loop_filtering/command.sh Finished motif_extraction in 9 seconds [~ 760 test (94.5273631840796%) started, 44 in queue, 24 running] Finished r_pdb2top in 6 seconds [~ 760 test (94.5273631840796%) started, 44 in queue, 23 running] Running Test swa_rna_gagu_04_clustering ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_04_clustering/command.sh Running Test rna_suitename ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_suitename/command.sh Finished rna_screen_phosphates in 10 seconds [~ 762 test (94.77611940298507%) started, 42 in queue, 24 running] Running Test rna_cluster ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_cluster/command.sh Finished mpil_load_implicit_lipids in 5 seconds [~ 763 test (94.90049751243781%) started, 41 in queue, 24 running] Running Test rna_add_WC_stats ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_add_WC_stats/command.sh Finished cluster_filter in 12 seconds [~ 764 test (95.02487562189054%) started, 40 in queue, 24 running] Running Test report_hbonds_for_plugin ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/report_hbonds_for_plugin/command.sh Finished RescorePDDF in 11 seconds [~ 765 test (95.14925373134328%) started, 39 in queue, 24 running] Running Test ralford_dump_rotamers ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ralford_dump_rotamers/command.sh Finished N-terminal_acetylation in 4 seconds [~ 766 test (95.27363184079601%) started, 38 in queue, 24 running] Running Test r_rmsf ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/r_rmsf/command.sh Finished minimize_6Dloopclose in 5 seconds [~ 767 test (95.39800995024876%) started, 37 in queue, 24 running] Running Test number_of_residuetypes ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/number_of_residuetypes/command.sh Finished mpil_find_pore_ahelical in 6 seconds [~ 768 test (95.5223880597015%) started, 36 in queue, 24 running] Running Test loop_hash ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/loop_hash/command.sh Finished drrafter_error_estimation in 6 seconds [~ 769 test (95.64676616915423%) started, 35 in queue, 24 running] Running Test include_cc_check ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/include_cc_check/command.sh Finished angle_recovery_stats in 5 seconds [~ 770 test (95.77114427860697%) started, 34 in queue, 24 running] Running Test fit_helixparams_a3b ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fit_helixparams_a3b/command.sh Finished include_cc_check in 0 seconds [~ 771 test (95.8955223880597%) started, 33 in queue, 24 running] Running Test calculate_sasa ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/calculate_sasa/command.sh Finished oop_create in 8 seconds [~ 772 test (96.01990049751244%) started, 32 in queue, 24 running] Running Test test_energy_method_options ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/test_energy_method_options/command.sh Finished cstfile_to_theozyme_pdb in 7 seconds [~ 773 test (96.14427860696517%) started, 31 in queue, 24 running] Running Test per_residue_solvent_exposure ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/per_residue_solvent_exposure/command.sh Finished non-canonical_connectivities in 13 seconds [~ 774 test (96.26865671641791%) started, 30 in queue, 24 running] Finished test_energy_method_options in 0 seconds [~ 774 test (96.26865671641791%) started, 30 in queue, 23 running] Running Test mp_span_from_pdb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_span_from_pdb/command.sh Running Test hierarchical_clustering ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hierarchical_clustering/command.sh Finished rosetta_scripts_info in 12 seconds [~ 776 test (96.51741293532338%) started, 28 in queue, 24 running] Finished CCS_PARCS in 5 seconds [~ 776 test (96.51741293532338%) started, 28 in queue, 23 running] Running Test fit_helixparams ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fit_helixparams/command.sh Running Test combine_silent ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/combine_silent/command.sh Finished DNA_methylation in 6 seconds [~ 778 test (96.76616915422886%) started, 26 in queue, 24 running] No correct command.sh file found for basic_gcn_tensorflow_test. Skipping. Running Test burial_measure_centroid ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/burial_measure_centroid/command.sh Finished swa_rna_loop_clusterer in 5 seconds [~ 780 test (97.01492537313433%) started, 24 in queue, 24 running] Finished per_residue_solvent_exposure in 0 seconds [~ 780 test (97.01492537313433%) started, 24 in queue, 23 running] Finished hierarchical_clustering in 0 seconds [~ 780 test (97.01492537313433%) started, 24 in queue, 22 running] Running Test BuildPeptide ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/BuildPeptide/command.sh Running Test trRosettaConstraintGenerator_rosettascripts Running Test score_aln ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosettaConstraintGenerator_rosettascripts/command.sh ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/score_aln/command.sh Finished swa_rna_gagu_04_clustering in 4 seconds [~ 783 test (97.38805970149254%) started, 21 in queue, 24 running] Running Test header_using_check ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/header_using_check/command.sh Finished fit_helixparams_rms in 8 seconds [~ 784 test (97.51243781094527%) started, 20 in queue, 24 running] Finished DARC_electrostatics in 6 seconds [~ 784 test (97.51243781094527%) started, 20 in queue, 23 running] Finished rna_suitename in 5 seconds [~ 784 test (97.51243781094527%) started, 20 in queue, 22 running] Finished rna_cluster in 4 seconds [~ 784 test (97.51243781094527%) started, 20 in queue, 21 running] Finished rna_add_WC_stats in 4 seconds [~ 784 test (97.51243781094527%) started, 20 in queue, 20 running] Finished loop_hash in 2 seconds [~ 784 test (97.51243781094527%) started, 20 in queue, 19 running] Finished burial_measure_centroid in 0 seconds [~ 784 test (97.51243781094527%) started, 20 in queue, 18 running] Finished score_aln in 0 seconds [~ 784 test (97.51243781094527%) started, 20 in queue, 17 running] Running Test extract_pdbs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/extract_pdbs/command.sh Running Test crossaln ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crossaln/command.sh Running Test rnp_ddg_relax_setup ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_relax_setup/command.sh Running Test rnp_ddg_relax_finalize ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_relax_finalize/command.sh Running Test rnp_ddg_finalize ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_finalize/command.sh Running Test rnp_ddg_calc_setup ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_calc_setup/command.sh Running Test mp_quick_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_quick_relax/command.sh Running Test features_scientific_benchmark Finished trRosettaConstraintGenerator_rosettascripts in 0 seconds [~ 792 test (98.50746268656717%) started, 12 in queue, 24 running] ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features_scientific_benchmark/command.sh Finished DARC_shapeonly in 6 seconds [~ 793 test (98.6318407960199%) started, 11 in queue, 24 running] Running Test features_postgres ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features_postgres/command.sh Running Test drrafter_setup_simple ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup_simple/command.sh PYTHON IS /home/benchmark/prefix/hojo-4/linux/python_virtual_environments/python-3.9/df3055f6f81b525b8050290cef45e968/bin/python PYTHON IS /home/benchmark/prefix/hojo-4/linux/python_virtual_environments/python-3.9/df3055f6f81b525b8050290cef45e968/bin/python PYTHON IS /home/benchmark/prefix/hojo-4/linux/python_virtual_environments/python-3.9/df3055f6f81b525b8050290cef45e968/bin/python PYTHON is /home/benchmark/prefix/hojo-4/linux/python_virtual_environments/python-3.9/df3055f6f81b525b8050290cef45e968/bin/python Finished header_using_check in 0 seconds [~ 794 test (98.75621890547264%) started, 10 in queue, 24 running] Finished rnp_ddg_relax_setup in 0 seconds [~ 794 test (98.75621890547264%) started, 10 in queue, 23 running] Finished rnp_ddg_relax_finalize in 0 seconds [~ 794 test (98.75621890547264%) started, 10 in queue, 22 running] Finished rnp_ddg_finalize in 0 seconds [~ 794 test (98.75621890547264%) started, 10 in queue, 21 running] Finished mp_quick_relax in 0 seconds [~ 794 test (98.75621890547264%) started, 10 in queue, 20 running] Finished features_scientific_benchmark in 0 seconds [~ 794 test (98.75621890547264%) started, 10 in queue, 19 running] Finished features_postgres in 0 seconds [~ 794 test (98.75621890547264%) started, 10 in queue, 18 running] Running Test drrafter_setup_protein_dock ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup_protein_dock/command.sh Running Test drrafter_setup_build_missing ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup_build_missing/command.sh Running Test drrafter_setup ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup/command.sh Running Test code_template_tests_unit ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/code_template_tests_unit/command.sh Running Test code_template_tests_app ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/code_template_tests_app/command.sh Running Test cluster_calibur ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cluster_calibur/command.sh Finished rnp_ddg_calc_setup in 0 seconds [~ 801 test (99.6268656716418%) started, 3 in queue, 24 running] Running Test central_class_modification ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/central_class_modification/command.sh Running Test case_sensitive_filenames ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/case_sensitive_filenames/command.sh Calibur clustering has been broken since its inception. The external version was never successfully integration tested because of typos in the integration test. The version ported to Rosetta has never worked either. Since now it causes hard-failures on release_debug, it needs to be deactivated for now. Finished swa_rna_gagu_14_combine_long_loop_filtering in 5 seconds [~ 802 test (99.75124378109453%) started, 2 in queue, 24 running] Finished cluster_calibur in 0 seconds [~ 802 test (99.75124378109453%) started, 2 in queue, 23 running] Finished central_class_modification in 0 seconds [~ 802 test (99.75124378109453%) started, 2 in queue, 22 running] Running Test Werror_check ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/Werror_check/command.sh Running Test RescoreSAXS ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/RescoreSAXS/command.sh Running Test HOW_TO_MAKE_TESTS ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/HOW_TO_MAKE_TESTS/command.sh Finished ralford_dump_rotamers in 4 seconds [~ 804 test (100.0%) started, 0 in queue, 23 running] Finished extract_pdbs in 0 seconds [~ 804 test (100.0%) started, 0 in queue, 22 running] Finished crossaln in 0 seconds [~ 804 test (100.0%) started, 0 in queue, 21 running] Finished drrafter_setup_simple in 0 seconds [~ 804 test (100.0%) started, 0 in queue, 20 running] Finished code_template_tests_unit in 0 seconds [~ 804 test (100.0%) started, 0 in queue, 19 running] Finished RescoreSAXS in 0 seconds [~ 804 test (100.0%) started, 0 in queue, 18 running] Finished HOW_TO_MAKE_TESTS in 0 seconds [~ 804 test (100.0%) started, 0 in queue, 17 running] Checking the status of the -Werror option in the Scons build settings: PASS Checking the status of the -Werror option in the CMake build settings: PASS Finished report_hbonds_for_plugin in 5 seconds [~ 804 test (100.0%) started, 0 in queue, 16 running] Finished drrafter_setup in 0 seconds [~ 804 test (100.0%) started, 0 in queue, 15 running] Finished Werror_check in 0 seconds [~ 804 test (100.0%) started, 0 in queue, 14 running] Finished combine_silent in 1 seconds [~ 804 test (100.0%) started, 0 in queue, 13 running] Finished drrafter_setup_protein_dock in 0 seconds [~ 804 test (100.0%) started, 0 in queue, 12 running] Finished drrafter_setup_build_missing in 0 seconds [~ 804 test (100.0%) started, 0 in queue, 11 running] Finished code_template_tests_app in 0 seconds [~ 804 test (100.0%) started, 0 in queue, 10 running] Finished CCD_loop_closure in 6 seconds [~ 804 test (100.0%) started, 0 in queue, 9 running] Finished r_rmsf in 4 seconds [~ 804 test (100.0%) started, 0 in queue, 8 running] Finished number_of_residuetypes in 4 seconds [~ 804 test (100.0%) started, 0 in queue, 7 running] Finished mp_span_from_pdb in 2 seconds [~ 804 test (100.0%) started, 0 in queue, 6 running] Finished fit_helixparams_a3b in 3 seconds [~ 804 test (100.0%) started, 0 in queue, 5 running] Finished fit_helixparams in 2 seconds [~ 804 test (100.0%) started, 0 in queue, 4 running] Finished calculate_sasa in 3 seconds [~ 804 test (100.0%) started, 0 in queue, 3 running] Finished BuildPeptide in 3 seconds [~ 804 test (100.0%) started, 0 in queue, 2 running] /usr/local/bin/git 65d53cb5c48ce3098a0fa59fab7e4ae71d327e6b Finished case_sensitive_filenames in 2 seconds [~ 804 test (100.0%) started, 0 in queue, 1 running] Finished features_database_schema in 46 seconds [~ 804 test (100.0%) started, 0 in queue, 0 running] Skipping comparison/analysis phase because command line option "--skip-comparison" was specified... Missing new/runtimes.yaml ──────────────── 'hojo-4' comparing commits:20636 linux.clang.integration.release_debug_no_symbols test_id=848490 vs. main:62142 previous_test_id=847958 ────────────────

Sub-Tests Results

linux.clang.integration.release_debug_no_symbols.code_template_tests_src 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62142/code_template_tests_src/command and /home/benchmark/working_dir/commits:20636/code_template_tests_src/command differ Only in /home/benchmark/working_dir/main:62142/code_template_tests_src: .test_did_not_run.log Only in /home/benchmark/working_dir/commits:20636/code_template_tests_src/test_src/protocols/test_templates: util.cc Only in /home/benchmark/working_dir/commits:20636/code_template_tests_src/test_src/protocols/test_templates: util.hh Files /home/benchmark/working_dir/main:62142/code_template_tests_src/util_log and /home/benchmark/working_dir/commits:20636/code_template_tests_src/util_log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62142/code_template_tests_src/command /home/benchmark/working_dir/commits:20636/code_template_tests_src/command 121c121 < %(python)s %(template_dir)s/generate_templates.py --test --type util --brief "testing templates" --namespace protocols test_templates >> util_log 2>&1 --- > %(python)s %(template_dir)s/generate_templates.py --test --type util --class_name util --brief "testing templates" --namespace protocols test_templates >> util_log 2>&1 Only in /home/benchmark/working_dir/main:62142/code_template_tests_src: .test_did_not_run.log Only in /home/benchmark/working_dir/commits:20636/code_template_tests_src/test_src/protocols/test_templates: util.cc Only in /home/benchmark/working_dir/commits:20636/code_template_tests_src/test_src/protocols/test_templates: util.hh diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62142/code_template_tests_src/util_log /home/benchmark/working_dir/commits:20636/code_template_tests_src/util_log 3c3,8 < class_name is necessary. Pass it as an argument. --- > Creating ROSETTA/tests/integration/new/code_template_tests_src/test_src/protocols/test_templates/util.cc > Creating ROSETTA/tests/integration/new/code_template_tests_src/test_src/protocols/test_templates/util.hh > > Remember to add your newly created files to the git repository: > > git add ROSETTA/tests/integration/new/code_template_tests_src/test_src/protocols/test_templates/util*

linux.clang.integration.release_debug_no_symbols.output_schema 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62142/output_schema/current_rosettascripts_schema.xsd and /home/benchmark/working_dir/commits:20636/output_schema/current_rosettascripts_schema.xsd differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62142/output_schema/current_rosettascripts_schema.xsd /home/benchmark/working_dir/commits:20636/output_schema/current_rosettascripts_schema.xsd 34053a34054,34058 > <xs:attribute name="dump_structures" type="rosetta_bool"> > <xs:annotation><xs:documentation xml:lang="en"> > Dump intermediate structures? > </xs:documentation></xs:annotation> > </xs:attribute>

linux.clang.integration.release_debug_no_symbols.replica_docking 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62142/replica_docking/flags_replica_dock and /home/benchmark/working_dir/commits:20636/replica_docking/flags_replica_dock differ Only in /home/benchmark/working_dir/commits:20636/replica_docking: output Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62142/replica_docking/flags_replica_dock /home/benchmark/working_dir/commits:20636/replica_docking/flags_replica_dock 4c4 < -run:n_replica 1 --- > -run:n_replica 3 Only in /home/benchmark/working_dir/commits:20636/replica_docking: output

All sub-tests

JSON output

{ "compared_with_test": { "full_name": "linux.clang.integration.release_debug_no_symbols", "name": "integration.release_debug_no_symbols", "platform": { "compiler": "clang", "extras": [], "os": "linux" }, "platform_as_string": "linux.clang", "revision": { "branch": "main", "revision_id": 62142 }, "state": "failed", "test_id": 847958 }, "summary": { "failed": 3, "failed_tests": [ "code_template_tests_src", "output_schema", "replica_docking" ], "total": 804 }, "tests": { "AddConstraintsToCurrentConformationMover": { "log": "", "state": "passed" }, "AlignPDBInfoToSequences": { "log": "", "state": "passed" }, "AlterSpecDisruption": { "log": "", "state": "passed" }, "AnchorFinder": { "log": "", "state": "passed" }, "AnchoredDesign": { "log": "", "state": "passed" }, "AnchoredPDBCreator": { "log": "", "state": "passed" }, "BFactorSelector": { "log": "", "state": "passed" }, "BuildPeptide": { "log": "", "state": "passed" }, "CCD_loop_closure": { "log": "", "state": "passed" }, "CCS_PARCS": { "log": "", "state": "passed" }, "ConsensusLoopDesign": { "log": "", "state": "passed" }, "ContactMolecularSurface": { "log": "", "state": "passed" }, "DARC_electrostatics": { "log": "", "state": "passed" }, "DARC_make_ray_files": { "log": "", "state": "passed" }, "DARC_sampling_on_the_fly": { "log": "", "state": "passed" }, "DARC_shapeonly": { "log": "", "state": "passed" }, "DNA_methylation": { "log": "", "state": "passed" }, "DumpTrajectoryEnergy": { "log": "", "state": "passed" }, "DumpTrajectoryEnergy_packing": { "log": "", "state": "passed" }, "Enzrevert_xml": { "log": "", "state": "passed" }, "FavorSequenceProfileMover": { "log": "", "state": "passed" }, "FilterReportAsPoseExtraScoresMover": { "log": "", "state": "passed" }, "FlipChirality": { "log": "", "state": "passed" }, "FloppyTail": { "log": "", "state": "passed" }, "HDXEnergy": { "log": "", "state": "passed" }, "HOW_TO_MAKE_TESTS": { "log": "", "state": "passed" }, "HelixBendFilter": { "log": "", "state": "passed" }, "InterfaceAnalyzer": { "log": "", "state": "passed" }, "InterfaceAnalyzer_allscores": { "log": "", "state": "passed" }, "InterfaceAnalyzer_bothpack": { "log": "", "state": "passed" }, "InterfaceAnalyzer_ligand": { "log": "", "state": "passed" }, "InterfaceAnalyzer_metrics": { "log": "", "state": "passed" }, "InterfaceAnalyzer_prepack": { "log": "", "state": "passed" }, "InterfaceAnalyzer_resfile": { "log": "", "state": "passed" }, "InterfaceAnalyzer_tracer": { "log": "", "state": "passed" }, "InterfaceDdG": { "log": "", "state": "passed" }, "KIC_refine": { "log": "", "state": "passed" }, "KIC_vicinity": { "log": "", "state": "passed" }, "KIC_with_fragments": { "log": "", "state": "passed" }, "LayerDesign": { "log": "", "state": "passed" }, "LayerDesign_symm": { "log": "", "state": "passed" }, "LayerSelector": { "log": "", "state": "passed" }, "LoopAnalyzer": { "log": "", "state": "passed" }, "LoopLengthChange": { "log": "", "state": "passed" }, "ModifyVariantTypeMover": { "log": "", "state": "passed" }, "MutateResidue_selector": { "log": "", "state": "passed" }, "N-terminal_acetylation": { "log": "", "state": "passed" }, "OversaturatedHbondAcceptorFilter": { "log": "", "state": "passed" }, "PDB_diagnostic": { "log": "", "state": "passed" }, "PTMPrediction": { "log": "", "state": "passed" }, "PeptideCyclizeMover": { "log": "", "state": "passed" }, "PeptideStubMover_prependRepeat": { "log": "", "state": "passed" }, "PolarDesign2019": { "log": "", "state": "passed" }, "ProQ": { "log": "", "state": "passed" }, "RBOut": { "log": "", "state": "passed" }, "ReadResfile_with_selector": { "log": "", "state": "passed" }, "RescorePDDF": { "log": "", "state": "passed" }, "RescoreSAXS": { "log": "", "state": "passed" }, "ResidueDisorder": { "log": "", "state": "passed" }, "RunSimpleMetric_b_factor_test": { "log": "", "state": "passed" }, "SID_ERMS_prediction": { "log": "", "state": "passed" }, "SID_rescore": { "log": "", "state": "passed" }, "SSElementSelector": { "log": "", "state": "passed" }, "SecondaryStructureFilter": { "log": "", "state": "passed" }, "SnugDock": { "log": "", "state": "passed" }, "StrandCurvatureByLevels": { "log": "", "state": "passed" }, "StrandHelixGeometryFilter": { "log": "", "state": "passed" }, "ThreadingInputter": { "log": "", "state": "passed" }, "TryDisulfPermutations": { "log": "", "state": "passed" }, "UBQ_E2_thioester": { "log": "", "state": "passed" }, "UBQ_E2_thioester_extra_bodies": { "log": "", "state": "passed" }, "UBQ_E2_thioester_two_ubiquitins": { "log": "", "state": "passed" }, "UBQ_Gp_CYD-CYD": { "log": "", "state": "passed" }, "UBQ_Gp_LYX-Cterm": { "log": "", "state": "passed" }, "UnsatSelector": { "log": "", "state": "passed" }, "Werror_check": { "log": "", "state": "passed" }, "abinitio": { "log": "", "state": "passed" }, "abinitio_with_trRosetta": { "log": "", "state": "passed" }, "add_constraints_to_current_conformation": { "log": "", "state": "passed" }, "add_helix_sequence_constraints": { "log": "", "state": "passed" }, "add_helix_sequence_constraints_advanced_setup": { "log": "", "state": "passed" }, "add_job_pair_data": { "log": "", "state": "passed" }, "ambiguous_nmr_distance_constraint": { "log": "", "state": "passed" }, "angle_recovery_stats": { "log": "", "state": "passed" }, "antibody_H3": { "log": "", "state": "passed" }, "antibody_H3_camelid": { "log": "", "state": "passed" }, "antibody_cc": { "log": "", "state": "passed" }, "antibody_designer": { "log": "", "state": "passed" }, "antibody_designer_camelid": { "log": "", "state": "passed" }, "antibody_designer_xml": { "log": "", "state": "passed" }, "antibody_graft": { "log": "", "state": "passed" }, "antibody_numbering_converter": { "log": "", "state": "passed" }, "app_exception_handling": { "log": "", "state": "passed" }, "assemble_domains_jd2": { "log": "", "state": "passed" }, "auto-drrafter_final_results": { "log": "", "state": "passed" }, "auto-drrafter_setup_run_R1": { "log": "", "state": "passed" }, "auto-drrafter_setup_run_R2": { "log": "", "state": "passed" }, "auto-drrafter_setup_run_R3": { "log": "", "state": "passed" }, "autoNOE_rosetta": { "log": "", "state": "passed" }, "autosetup_metals_centroid": { "log": "", "state": "passed" }, "backbonegridsampler": { "log": "", "state": "passed" }, "backbonegridsampler_multiresidue": { "log": "", "state": "passed" }, "backbonegridsampler_nstruct_mode": { "log": "", "state": "passed" }, "backrub": { "log": "", "state": "passed" }, "backrub_interface_ddG": { "log": "", "state": "passed" }, "backrub_pilot": { "log": "", "state": "passed" }, "balancedKIC": { "log": "", "state": "passed" }, "basic_gcn_tensorflow_test": { "log": "", "state": "passed" }, "batch_relax": { "log": "", "state": "passed" }, "bcl_fragment_mutate": { "log": "", "state": "passed" }, "beta_strand_homodimer": { "log": "", "state": "passed" }, "bin_initialization": { "log": "", "state": "passed" }, "bin_perturbation": { "log": "", "state": "passed" }, "binselector": { "log": "", "state": "passed" }, "binselector_probins": { "log": "", "state": "passed" }, "blob_finder": { "log": "", "state": "passed" }, "broker": { "log": "", "state": "passed" }, "broker_membrane": { "log": "", "state": "passed" }, "bundlegridsampler": { "log": "", "state": "passed" }, "bundlegridsampler_composition_energy": { "log": "", "state": "passed" }, "bundlegridsampler_composition_energy_fract_range": { "log": "", "state": "passed" }, "bundlegridsampler_copy_pitch": { "log": "", "state": "passed" }, "bundlegridsampler_design": { "log": "", "state": "passed" }, "bundlegridsampler_design_nstruct_mode": { "log": "", "state": "passed" }, "bundlegridsampler_epsilon": { "log": "", "state": "passed" }, "bundlegridsampler_multirepeat": { "log": "", "state": "passed" }, "bundlegridsampler_z0_offset": { "log": "", "state": "passed" }, "bundlegridsampler_z1_offset": { "log": "", "state": "passed" }, "bundlereporter_filter": { "log": "", "state": "passed" }, "burial_measure_centroid": { "log": "", "state": "passed" }, "buried_area_filter": { "log": "", "state": "passed" }, "buried_unsat_kinemage": { "log": "", "state": "passed" }, "buried_unsat_voids_hbnet_design": { "log": "", "state": "passed" }, "buried_unsat_voids_hbnet_design_symm": { "log": "", "state": "passed" }, "c-term_conjugation": { "log": "", "state": "passed" }, "calculate_sasa": { "log": "", "state": "passed" }, "carbohydrates": { "log": "", "state": "passed" }, "cart_min_glycans": { "log": "", "state": "passed" }, "cartesianddg": { "log": "", "state": "passed" }, "case_sensitive_filenames": { "log": "", "state": "passed" }, "ccd_ends_graft_mover_rs": { "log": "", "state": "passed" }, "central_class_modification": { "log": "", "state": "passed" }, "centroid_disulfide_scores": { "log": "", "state": "passed" }, "centroid_from_fullatom": { "log": "", "state": "passed" }, "cl_complex_rescore": { "log": "", "state": "passed" }, "classic_relax_1a19": { "log": "", "state": "passed" }, "cleanAlignment": { "log": "", "state": "passed" }, "cluster": { "log": "", "state": "passed" }, "cluster_alns": { "log": "", "state": "passed" }, "cluster_calibur": { "log": "", "state": "passed" }, "cluster_filter": { "log": "", "state": "passed" }, "cmaes_minimizer": { "log": "", "state": "passed" }, "coarse_rna_scoring": { "log": "", "state": "passed" }, "code_template_tests_app": { "log": "", "state": "passed" }, "code_template_tests_citations": { "log": "", "state": "passed" }, "code_template_tests_src": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62142/code_template_tests_src/command and /home/benchmark/working_dir/commits:20636/code_template_tests_src/command differ\r\nOnly in /home/benchmark/working_dir/main:62142/code_template_tests_src: .test_did_not_run.log\r\nOnly in /home/benchmark/working_dir/commits:20636/code_template_tests_src/test_src/protocols/test_templates: util.cc\r\nOnly in /home/benchmark/working_dir/commits:20636/code_template_tests_src/test_src/protocols/test_templates: util.hh\r\nFiles /home/benchmark/working_dir/main:62142/code_template_tests_src/util_log and /home/benchmark/working_dir/commits:20636/code_template_tests_src/util_log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62142/code_template_tests_src/command /home/benchmark/working_dir/commits:20636/code_template_tests_src/command\r\n121c121\r\n< %(python)s %(template_dir)s/generate_templates.py --test --type util --brief \"testing templates\" --namespace protocols test_templates >> util_log 2>&1\r\n---\r\n> %(python)s %(template_dir)s/generate_templates.py --test --type util --class_name util --brief \"testing templates\" --namespace protocols test_templates >> util_log 2>&1\r\nOnly in /home/benchmark/working_dir/main:62142/code_template_tests_src: .test_did_not_run.log\r\nOnly in /home/benchmark/working_dir/commits:20636/code_template_tests_src/test_src/protocols/test_templates: util.cc\r\nOnly in /home/benchmark/working_dir/commits:20636/code_template_tests_src/test_src/protocols/test_templates: util.hh\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62142/code_template_tests_src/util_log /home/benchmark/working_dir/commits:20636/code_template_tests_src/util_log\r\n3c3,8\r\n< class_name is necessary. Pass it as an argument.\r\n---\r\n> Creating ROSETTA/tests/integration/new/code_template_tests_src/test_src/protocols/test_templates/util.cc\r\n> Creating ROSETTA/tests/integration/new/code_template_tests_src/test_src/protocols/test_templates/util.hh\r\n> \r\n> Remember to add your newly created files to the git repository:\r\n> \r\n> git add ROSETTA/tests/integration/new/code_template_tests_src/test_src/protocols/test_templates/util*\r\n", "state": "failed" }, "code_template_tests_unit": { "log": "", "state": "passed" }, "coenzymes": { "log": "", "state": "passed" }, "combine_silent": { "log": "", "state": "passed" }, "composition_energy_layers": { "log": "", "state": "passed" }, "constel": { "log": "", "state": "passed" }, "constraints_metric": { "log": "", "state": "passed" }, "contactMap": { "log": "", "state": "passed" }, "control_flow_rs": { "log": "", "state": "passed" }, "copy_rotamer_mover": { "log": "", "state": "passed" }, "count_cycpep_sequences": { "log": "", "state": "passed" }, "coupled_moves": { "log": "", "state": "passed" }, "crankshaft_flip": { "log": "", "state": "passed" }, "create_clash-based_repack_shell": { "log": "", "state": "passed" }, "create_sequence_motif": { "log": "", "state": "passed" }, "crossaln": { "log": "", "state": "passed" }, "crosslinkermover_1_4_bbmb_asymm": { "log": "", "state": "passed" }, "crosslinkermover_1_4_bbmb_c2_symmetry": { "log": "", "state": "passed" }, "crosslinkermover_1_4_bbmb_s2_symm": { "log": "", "state": "passed" }, "crosslinkermover_lanthionine": { "log": "", "state": "passed" }, "crosslinkermover_methyllanthionine": { "log": "", "state": "passed" }, "crosslinkermover_octahedral": { "log": "", "state": "passed" }, "crosslinkermover_octahedral_s2_symm": { "log": "", "state": "passed" }, "crosslinkermover_square_planar": { "log": "", "state": "passed" }, "crosslinkermover_square_planar_d2_symm": { "log": "", "state": "passed" }, "crosslinkermover_square_pyramidal": { "log": "", "state": "passed" }, "crosslinkermover_tetrahedral_metal": { "log": "", "state": "passed" }, "crosslinkermover_tetrahedral_metal_asp": { "log": "", "state": "passed" }, "crosslinkermover_tetrahedral_metal_c2_symmetry": { "log": "", "state": "passed" }, "crosslinkermover_tetrahedral_metal_d2_symmetry": { "log": "", "state": "passed" }, "crosslinkermover_thioether": { "log": "", "state": "passed" }, "crosslinkermover_tma": { "log": "", "state": "passed" }, "crosslinkermover_tma_symm": { "log": "", "state": "passed" }, "crosslinkermover_trigonal_planar": { "log": "", "state": "passed" }, "crosslinkermover_trigonal_planar_c3_symm": { "log": "", "state": "passed" }, "crosslinkermover_trigonal_pyramidal": { "log": "", "state": "passed" }, "crosslinkermover_trigonal_pyramidal_c3_symm": { "log": "", "state": "passed" }, "cs_rosetta_rna": { "log": "", "state": "passed" }, "cst_info": { "log": "", "state": "passed" }, "cstfile_to_theozyme_pdb": { "log": "", "state": "passed" }, "custom_basetype_packer_palette": { "log": "", "state": "passed" }, "cyclization": { "log": "", "state": "passed" }, "cycpep_design_pipeline": { "log": "", "state": "passed" }, "cycpep_rdkit_metric": { "log": "", "state": "passed" }, "cycpep_rigid_body_permutation_mover": { "log": "", "state": "passed" }, "cycpep_symmetry_filter": { "log": "", "state": "passed" }, "d_workflow": { "log": "", "state": "passed" }, "database_jd2_compact_io": { "log": "", "state": "passed" }, "database_jd2_io": { "log": "", "state": "passed" }, "database_md5": { "log": "", "state": "passed" }, "database_session_resource": { "log": "", "state": "passed" }, "ddG_ensemble": { "log": "", "state": "passed" }, "ddG_of_mutation": { "log": "", "state": "passed" }, "ddG_scan": { "log": "", "state": "passed" }, "ddG_sym": { "log": "", "state": "passed" }, "dehydro_aa_patch": { "log": "", "state": "passed" }, "density_denovo": { "log": "", "state": "passed" }, "density_refine": { "log": "", "state": "passed" }, "density_refine_symm": { "log": "", "state": "passed" }, "density_tools": { "log": "", "state": "passed" }, "design_glycans": { "log": "", "state": "passed" }, "design_w_custom_palette-CAAs": { "log": "", "state": "passed" }, "design_w_custom_palette-NCAAs": { "log": "", "state": "passed" }, "design_w_custom_palette-RNA": { "log": "", "state": "passed" }, "dgdp_aio": { "log": "", "state": "passed" }, "dgdp_script": { "log": "", "state": "passed" }, "dihedral_constraint_generator": { "log": "", "state": "passed" }, "distances": { "log": "", "state": "passed" }, "disulfidize_beta_cys": { "log": "", "state": "passed" }, "dna_interface_design": { "log": "", "state": "passed" }, "dock_glycans": { "log": "", "state": "passed" }, "dock_with_hotspot_place_simultaneously": { "log": "", "state": "passed" }, "docking_distance_constraints": { "log": "", "state": "passed" }, "docking_ensemble": { "log": "", "state": "passed" }, "docking_ensemble_prepack": { "log": "", "state": "passed" }, "docking_full_protocol": { "log": "", "state": "passed" }, "docking_local_refine": { "log": "", "state": "passed" }, "docking_local_refine_min": { "log": "", "state": "passed" }, "docking_low_res": { "log": "", "state": "passed" }, "docking_prepack": { "log": "", "state": "passed" }, "docking_site_constraints": { "log": "", "state": "passed" }, "doug_dock_design_min_mod2_cal_cal": { "log": "", "state": "passed" }, "drrafter_error_estimation": { "log": "", "state": "passed" }, "drrafter_run": { "log": "", "state": "passed" }, "drrafter_setup": { "log": "", "state": "passed" }, "drrafter_setup_build_missing": { "log": "", "state": "passed" }, "drrafter_setup_protein_dock": { "log": "", "state": "passed" }, "drrafter_setup_real_test_H": { "log": "", "state": "passed" }, "drrafter_setup_real_test_H_no_init": { "log": "", "state": "passed" }, "drrafter_setup_ribosome_test": { "log": "", "state": "passed" }, "drrafter_setup_simple": { "log": "", "state": "passed" }, "duplicate_header_guards": { "log": "", "state": "passed" }, "energy_based_clustering_alpha_aa": { "log": "", "state": "passed" }, "energy_based_clustering_alpha_aa_bin_analysis": { "log": "", "state": "passed" }, "energy_based_clustering_alpha_aa_dihedral": { "log": "", "state": "passed" }, "energy_based_clustering_alpha_aa_scorefile": { "log": "", "state": "passed" }, "entropy_correction": { "log": "", "state": "passed" }, "enumerative_sampling": { "log": "", "state": "passed" }, "enzdes": { "log": "", "state": "passed" }, "enzscore_filter_dimetal": { "log": "", "state": "passed" }, "enzscore_filter_dimetal_sym": { "log": "", "state": "passed" }, "enzscore_filter_ligand": { "log": "", "state": "passed" }, "enzscore_filter_metal": { "log": "", "state": "passed" }, "enzscore_filter_metal_sym": { "log": "", "state": "passed" }, "erraser_minimize": { "log": "", "state": "passed" }, "esm_model_perplexity": { "log": "", "state": "passed" }, "evolution": { "log": "", "state": "passed" }, "exclusively_shared_jumps": { "log": "", "state": "passed" }, "explicit_membrane": { "log": "", "state": "passed" }, "extract_atomtree_diffs": { "log": "", "state": "passed" }, "extract_pdbs": { "log": "", "state": "passed" }, "farfar_mrna": { "log": "", "state": "passed" }, "farnesyl": { "log": "", "state": "passed" }, "fast_relax": { "log": "", "state": "passed" }, "fast_relax_scripts": { "log": "", "state": "passed" }, "favor_coupling_tensor": { "log": "", "state": "passed" }, "favor_native_residue": { "log": "", "state": "passed" }, "features": { "log": "", "state": "passed" }, "features_database_schema": { "log": "", "state": "passed" }, "features_parallel": { "log": "", "state": "passed" }, "features_pdb": { "log": "", "state": "passed" }, "features_pdb_mpi": { "log": "", "state": "passed" }, "features_postgres": { "log": "", "state": "passed" }, "features_scientific_benchmark": { "log": "", "state": "passed" }, "fiber_diffraction": { "log": "", "state": "passed" }, "fiber_diffraction_fad": { "log": "", "state": "passed" }, "fit_helixparams": { "log": "", "state": "passed" }, "fit_helixparams_a3b": { "log": "", "state": "passed" }, "fit_helixparams_rms": { "log": "", "state": "passed" }, "fix_alignment_to_match_pdb": { "log": "", "state": "passed" }, "fixbb": { "log": "", "state": "passed" }, "flexpepdock": { "log": "", "state": "passed" }, "flexpepdock_abinitio": { "log": "", "state": "passed" }, "fold_and_dock": { "log": "", "state": "passed" }, "fold_cst_new": { "log": "", "state": "passed" }, "fold_from_loops": { "log": "", "state": "passed" }, "fragment_picker": { "log": "", "state": "passed" }, "fragmentpicker_integration_demo": { "log": "", "state": "passed" }, "fuzzy": { "log": "", "state": "passed" }, "ga_ligand_dock": { "log": "", "state": "passed" }, "ga_ligand_dock_amino_acid": { "log": "", "state": "passed" }, "ga_ligand_dock_macrocycle": { "log": "", "state": "passed" }, "gen_apo_grids": { "log": "", "state": "passed" }, "gen_lig_grids": { "log": "", "state": "passed" }, "generate_6Dloopclose": { "log": "", "state": "passed" }, "genkic_bin_perturbing": { "log": "", "state": "passed" }, "genkic_bin_sampling": { "log": "", "state": "passed" }, "genkic_bin_setting": { "log": "", "state": "passed" }, "genkic_dihedral_copying": { "log": "", "state": "passed" }, "genkic_lowmemory_mode": { "log": "", "state": "passed" }, "genkic_rama_filter": { "log": "", "state": "passed" }, "genkic_ramaprepro_sampling": { "log": "", "state": "passed" }, "genkic_sugars": { "log": "", "state": "passed" }, "geometric_solvation": { "log": "", "state": "passed" }, "glycan_anomers": { "log": "", "state": "passed" }, "glycan_clash_check": { "log": "", "state": "passed" }, "glycan_refinment": { "log": "", "state": "passed" }, "glycan_relax": { "log": "", "state": "passed" }, "glycan_sequon_scanner": { "log": "", "state": "passed" }, "glycan_tree_relax": { "log": "", "state": "passed" }, "glycomutagenesis": { "log": "", "state": "passed" }, "glycopeptidedocking": { "log": "", "state": "passed" }, "glycopeptidedocking_diglyco_long": { "log": "", "state": "passed" }, "glycosylation": { "log": "", "state": "passed" }, "grid_scores_features": { "log": "", "state": "passed" }, "hbnet": { "log": "", "state": "passed" }, "hbnet_asymm": { "log": "", "state": "passed" }, "hbnet_energy": { "log": "", "state": "passed" }, "hbnet_energy_rosettascripts_linear": { "log": "", "state": "passed" }, "hbnet_energy_symm": { "log": "", "state": "passed" }, "hbnet_use_input_rot": { "log": "", "state": "passed" }, "hbonds": { "log": "", "state": "passed" }, "hbonds_sp2": { "log": "", "state": "passed" }, "hbondstoresidue_selector": { "log": "", "state": "passed" }, "hbs_design": { "log": "", "state": "passed" }, "header_using_check": { "log": "", "state": "passed" }, "helical_bundle": { "log": "", "state": "passed" }, "helical_bundle_nonideal": { "log": "", "state": "passed" }, "helical_bundle_predict": { "log": "", "state": "passed" }, "helical_bundle_predict_psipred": { "log": "", "state": "passed" }, "helical_bundle_predict_psipred_with_helix_globals": { "log": "", "state": "passed" }, "helical_bundle_predict_sequence": { "log": "", "state": "passed" }, "helical_bundle_predict_skipping_residues": { "log": "", "state": "passed" }, "helix_from_sequence": { "log": "", "state": "passed" }, "hierarchical_clustering": { "log": "", "state": "passed" }, "homodimer_fnd_ref2015_memb": { "log": "", "state": "passed" }, "hotspot_graft": { "log": "", "state": "passed" }, "hotspot_hashing": { "log": "", "state": "passed" }, "hotspot_stub_constraints": { "log": "", "state": "passed" }, "hshash_utils": { "log": "", "state": "passed" }, "hts_io": { "log": "", "state": "passed" }, "hybridization": { "log": "", "state": "passed" }, "hydrate": { "log": "", "state": "passed" }, "hydrate_relax": { "log": "", "state": "passed" }, "identify_cdr_clusters": { "log": "", "state": "passed" }, "ig_dump": { "log": "", "state": "passed" }, "include_cc_check": { "log": "", "state": "passed" }, "interaction_graph_summary_metric": { "log": "", "state": "passed" }, "interface_energy": { "log": "", "state": "passed" }, "inv_kin_lig_loop_design": { "log": "", "state": "passed" }, "iphold": { "log": "", "state": "passed" }, "jd2test_PDBIO": { "log": "", "state": "passed" }, "jd2test_PDBin_mmCIFout": { "log": "", "state": "passed" }, "jd2test_PDBin_mmCIFout_extra_data_separate": { "log": "", "state": "passed" }, "jd2test_mmCIFIO": { "log": "", "state": "passed" }, "jd2test_mmCIFin_PDBout": { "log": "", "state": "passed" }, "job_definition_script_vars": { "log": "", "state": "passed" }, "jrelax": { "log": "", "state": "passed" }, "jscore": { "log": "", "state": "passed" }, "kinemage_grid_output": { "log": "", "state": "passed" }, "kinematic_looprelax": { "log": "", "state": "passed" }, "ld_converter": { "log": "", "state": "passed" }, "ligand_database_io": { "log": "", "state": "passed" }, "ligand_dock_7cpa": { "log": "", "state": "passed" }, "ligand_dock_cholesterol": { "log": "", "state": "passed" }, "ligand_dock_ensemble": { "log": "", "state": "passed" }, "ligand_dock_grid": { "log": "", "state": "passed" }, "ligand_dock_script": { "log": "", "state": "passed" }, "ligand_motif_design": { "log": "", "state": "passed" }, "ligand_motif_discovery": { "log": "", "state": "passed" }, "ligand_motif_identification": { "log": "", "state": "passed" }, "ligand_water_docking": { "log": "", "state": "passed" }, "longest_continuous_polar_segment_filter": { "log": "", "state": "passed" }, "loop_creation": { "log": "", "state": "passed" }, "loop_grower_N_term_symm": { "log": "", "state": "passed" }, "loop_hash": { "log": "", "state": "passed" }, "loop_modeling": { "log": "", "state": "passed" }, "make_and_perturb_bundle_multirepeat": { "log": "", "state": "passed" }, "make_exemplar": { "log": "", "state": "passed" }, "make_mainchain_potential": { "log": "", "state": "passed" }, "make_mainchain_potential_symm": { "log": "", "state": "passed" }, "make_mainchain_potential_symm_preproline": { "log": "", "state": "passed" }, "make_rot_lib": { "log": "", "state": "passed" }, "make_symmdef_file": { "log": "", "state": "passed" }, "match_1c2t": { "log": "", "state": "passed" }, "match_1n9l": { "log": "", "state": "passed" }, "match_6cpa": { "log": "", "state": "passed" }, "match_xml": { "log": "", "state": "passed" }, "measure_lcaa_radii": { "log": "", "state": "passed" }, "membrane_abinitio": { "log": "", "state": "passed" }, "metal_setup": { "log": "", "state": "passed" }, "metalloprotein_abrelax": { "log": "", "state": "passed" }, "metalloprotein_broker": { "log": "", "state": "passed" }, "metropolis_hastings": { "log": "", "state": "passed" }, "mf_fixbb_des": { "log": "", "state": "passed" }, "mf_fixbb_sc": { "log": "", "state": "passed" }, "mf_flexbb_sc": { "log": "", "state": "passed" }, "mg_modeler": { "log": "", "state": "passed" }, "mg_modeler_lores": { "log": "", "state": "passed" }, "mhc_epitope": { "log": "", "state": "passed" }, "mhc_epitope_nmer_preload": { "log": "", "state": "passed" }, "min_pack_min": { "log": "", "state": "passed" }, "minimize_6Dloopclose": { "log": "", "state": "passed" }, "minimize_with_elec_dens": { "log": "", "state": "passed" }, "mirror_symm": { "log": "", "state": "passed" }, "mixed_monte_carlo": { "log": "", "state": "passed" }, "mm_params": { "log": "", "state": "passed" }, "mmtfIO_score_test": { "log": "", "state": "passed" }, "molfile_to_params": { "log": "", "state": "passed" }, "molfile_to_params_polymer": { "log": "", "state": "passed" }, "motif_dna_packer_design": { "log": "", "state": "passed" }, "motif_extraction": { "log": "", "state": "passed" }, "motif_score_filter": { "log": "", "state": "passed" }, "mp_dock": { "log": "", "state": "passed" }, "mp_dock_ensemble": { "log": "", "state": "passed" }, "mp_dock_prepack": { "log": "", "state": "passed" }, "mp_dock_setup": { "log": "", "state": "passed" }, "mp_domain_assembly": { "log": "", "state": "passed" }, "mp_domain_assembly_FtsQ": { "log": "", "state": "passed" }, "mp_f19_relax": { "log": "", "state": "passed" }, "mp_find_interface": { "log": "", "state": "passed" }, "mp_interface_statistics": { "log": "", "state": "passed" }, "mp_ligand_interface": { "log": "", "state": "passed" }, "mp_loadtime": { "log": "", "state": "passed" }, "mp_mutate_relax": { "log": "", "state": "passed" }, "mp_mutate_repack": { "log": "", "state": "passed" }, "mp_quick_relax": { "log": "", "state": "passed" }, "mp_quick_relax_ref2015_memb": { "log": "", "state": "passed" }, "mp_range_relax": { "log": "", "state": "passed" }, "mp_relax": { "log": "", "state": "passed" }, "mp_score_jd2": { "log": "", "state": "passed" }, "mp_span_ang_ref2015_memb": { "log": "", "state": "passed" }, "mp_span_from_pdb": { "log": "", "state": "passed" }, "mp_symdock": { "log": "", "state": "passed" }, "mp_symmetry_load": { "log": "", "state": "passed" }, "mp_transform": { "log": "", "state": "passed" }, "mp_transform_optimize": { "log": "", "state": "passed" }, "mp_vis_emb": { "log": "", "state": "passed" }, "mpi_multistate_design": { "log": "", "state": "passed" }, "mpi_simple_cycpep_predict": { "log": "", "state": "passed" }, "mpi_simple_cycpep_predict_4level": { "log": "", "state": "passed" }, "mpi_simple_cycpep_predict_computing_pnear_to_all": { "log": "", "state": "passed" }, "mpil_find_pore_ahelical": { "log": "", "state": "passed" }, "mpil_find_pore_bbarrel": { "log": "", "state": "passed" }, "mpil_load_implicit_lipids": { "log": "", "state": "passed" }, "mr_protocols": { "log": "", "state": "passed" }, "multistage_rosetta_scripts": { "log": "", "state": "passed" }, "multistage_rosetta_scripts_clustering": { "log": "", "state": "passed" }, "multithreaded_fastdesign": { "log": "", "state": "passed" }, "multithreaded_fixbb": { "log": "", "state": "passed" }, "multithreaded_interaction_graph_accuracy": { "log": "", "state": "passed" }, "multithreaded_interaction_graph_accuracy_symm": { "log": "", "state": "passed" }, "multithreaded_packrotamersmover": { "log": "", "state": "passed" }, "mutate": { "log": "", "state": "passed" }, "ncaa_fixbb": { "log": "", "state": "passed" }, "ncbb_packer_palette": { "log": "", "state": "passed" }, "netcharge_design": { "log": "", "state": "passed" }, "netcharge_design_symm": { "log": "", "state": "passed" }, "next_generation_KIC": { "log": "", "state": "passed" }, "noe_assignment": { "log": "", "state": "passed" }, "non-canonical_connectivities": { "log": "", "state": "passed" }, "nonideal_rtmin": { "log": "", "state": "passed" }, "nucleobase_sample_around": { "log": "", "state": "passed" }, "number_of_residuetypes": { "log": "", "state": "passed" }, "oligourea_design": { "log": "", "state": "passed" }, "oligourea_predict": { "log": "", "state": "passed" }, "oop_create": { "log": "", "state": "passed" }, "oop_design": { "log": "", "state": "passed" }, "oop_dock_design": { "log": "", "state": "passed" }, "orbitals": { "log": "", "state": "passed" }, "output_schema": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62142/output_schema/current_rosettascripts_schema.xsd and /home/benchmark/working_dir/commits:20636/output_schema/current_rosettascripts_schema.xsd differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62142/output_schema/current_rosettascripts_schema.xsd /home/benchmark/working_dir/commits:20636/output_schema/current_rosettascripts_schema.xsd\r\n34053a34054,34058\r\n> <xs:attribute name=\"dump_structures\" type=\"rosetta_bool\">\r\n> <xs:annotation><xs:documentation xml:lang=\"en\">\r\n> Dump intermediate structures?\r\n> </xs:documentation></xs:annotation>\r\n> </xs:attribute>\r\n", "state": "failed" }, "pH_mode": { "log": "", "state": "passed" }, "pepspec_anchor_dock": { "log": "", "state": "passed" }, "peptiderive": { "log": "", "state": "passed" }, "per_residue_energies": { "log": "", "state": "passed" }, "per_residue_sc_sasa": { "log": "", "state": "passed" }, "per_residue_solvent_exposure": { "log": "", "state": "passed" }, "pertmin": { "log": "", "state": "passed" }, "perturb_helical_bundle": { "log": "", "state": "passed" }, "perturb_helical_bundle_copying_pitch": { "log": "", "state": "passed" }, "perturb_helical_bundle_epsilon": { "log": "", "state": "passed" }, "perturb_helical_bundle_setting": { "log": "", "state": "passed" }, "perturb_helical_bundle_z_offset": { "log": "", "state": "passed" }, "phiselector": { "log": "", "state": "passed" }, "phosphonate": { "log": "", "state": "passed" }, "phosphorylation": { "log": "", "state": "passed" }, "place_simultaneously": { "log": "", "state": "passed" }, "pmut_scan": { "log": "", "state": "passed" }, "pna": { "log": "", "state": "passed" }, "pna_base_pairs": { "log": "", "state": "passed" }, "pocket_measure": { "log": "", "state": "passed" }, "pocket_relax": { "log": "", "state": "passed" }, "pocket_suggest_targets": { "log": "", "state": "passed" }, "polyaramid_test_trivial": { "log": "", "state": "passed" }, "pose_sewing": { "log": "", "state": "passed" }, "posttranslationalmod_io": { "log": "", "state": "passed" }, "ppi_v3_suiteA": { "log": "", "state": "passed" }, "ppi_v3_suiteB": { "log": "", "state": "passed" }, "ppi_v3_suiteC": { "log": "", "state": "passed" }, "ppi_v3_suiteD": { "log": "", "state": "passed" }, "ppi_v3_suiteE": { "log": "", "state": "passed" }, "ppi_v3_suiteF": { "log": "", "state": "passed" }, "ppi_v3_suiteG": { "log": "", "state": "passed" }, "ppk": { "log": "", "state": "passed" }, "proteinMPNN_model_perplexity": { "log": "", "state": "passed" }, "protocol_metric": { "log": "", "state": "passed" }, "pwsho": { "log": "", "state": "passed" }, "pymol_cif": { "log": "", "state": "passed" }, "r_pdb2top": { "log": "", "state": "passed" }, "r_rmsf": { "log": "", "state": "passed" }, "ralford_dump_rotamers": { "log": "", "state": "passed" }, "rama_mutation_selector": { "log": "", "state": "passed" }, "range_relax_w_cst": { "log": "", "state": "passed" }, "rb_recces": { "log": "", "state": "passed" }, "rdkit_metrics": { "log": "", "state": "passed" }, "read_polymeric_components": { "log": "", "state": "passed" }, "readin_dna_rna_protein": { "log": "", "state": "passed" }, "real_virt_mover": { "log": "", "state": "passed" }, "recces_turner": { "log": "", "state": "passed" }, "recon_design": { "log": "", "state": "passed" }, "recon_design_mpi": { "log": "", "state": "passed" }, "referencepose_mutateresidue": { "log": "", "state": "passed" }, "relax_w_allatom_cst": { "log": "", "state": "passed" }, "remodel_disulfides_rosettascripts": { "log": "", "state": "passed" }, "remodel_helical_repeat": { "log": "", "state": "passed" }, "repack_with_elec_dens": { "log": "", "state": "passed" }, "repeat_propagate": { "log": "", "state": "passed" }, "repeat_propagate_v2": { "log": "", "state": "passed" }, "repeat_propagate_v3": { "log": "", "state": "passed" }, "repeat_relax": { "log": "", "state": "passed" }, "replica_docking": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62142/replica_docking/flags_replica_dock and /home/benchmark/working_dir/commits:20636/replica_docking/flags_replica_dock differ\r\nOnly in /home/benchmark/working_dir/commits:20636/replica_docking: output\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62142/replica_docking/flags_replica_dock /home/benchmark/working_dir/commits:20636/replica_docking/flags_replica_dock\r\n4c4\r\n< -run:n_replica 1\r\n---\r\n> -run:n_replica 3\r\nOnly in /home/benchmark/working_dir/commits:20636/replica_docking: output\r\n", "state": "failed" }, "report_hbonds_for_plugin": { "log": "", "state": "passed" }, "res_lipo_ref2015_memb": { "log": "", "state": "passed" }, "residue_energy_breakdown": { "log": "", "state": "passed" }, "resource_database_locator": { "log": "", "state": "passed" }, "restype_converter": { "log": "", "state": "passed" }, "rings": { "log": "", "state": "passed" }, "rna_add_WC_stats": { "log": "", "state": "passed" }, "rna_assemble": { "log": "", "state": "passed" }, "rna_cluster": { "log": "", "state": "passed" }, "rna_denovo": { "log": "", "state": "passed" }, "rna_denovo_RNP_low_res": { "log": "", "state": "passed" }, "rna_denovo_RNP_refine_native": { "log": "", "state": "passed" }, "rna_denovo_base_pair_constraints": { "log": "", "state": "passed" }, "rna_denovo_base_pair_setup": { "log": "", "state": "passed" }, "rna_denovo_bps": { "log": "", "state": "passed" }, "rna_denovo_bps_fixed_ends": { "log": "", "state": "passed" }, "rna_denovo_bps_helix_ends": { "log": "", "state": "passed" }, "rna_denovo_dna_bridge": { "log": "", "state": "passed" }, "rna_denovo_fragment_homology_exclusion": { "log": "", "state": "passed" }, "rna_denovo_grid_vdw": { "log": "", "state": "passed" }, "rna_denovo_lariat": { "log": "", "state": "passed" }, "rna_denovo_new_FT_2in_dens": { "log": "", "state": "passed" }, "rna_denovo_new_FT_5P_j12_leadzyme": { "log": "", "state": "passed" }, "rna_denovo_new_FT_RNP_2prot_dens": { "log": "", "state": "passed" }, "rna_denovo_new_FT_rna_two_chains": { "log": "", "state": "passed" }, "rna_denovo_new_libs": { "log": "", "state": "passed" }, "rna_denovo_symm_hack": { "log": "", "state": "passed" }, "rna_design": { "log": "", "state": "passed" }, "rna_farfar_block_stack": { "log": "", "state": "passed" }, "rna_farfar_noncanonical_hairpin": { "log": "", "state": "passed" }, "rna_farfar_syn_chi_res": { "log": "", "state": "passed" }, "rna_helix": { "log": "", "state": "passed" }, "rna_minimize": { "log": "", "state": "passed" }, "rna_minimize_6D_loop_close": { "log": "", "state": "passed" }, "rna_motif": { "log": "", "state": "passed" }, "rna_predict_chem_map": { "log": "", "state": "passed" }, "rna_puzzle11_H2H3H4_run3_connectU40": { "log": "", "state": "passed" }, "rna_puzzle12_P5P6P7_DMS": { "log": "", "state": "passed" }, "rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation": { "log": "", "state": "passed" }, "rna_puzzle5_p2_GAAA_mini": { "log": "", "state": "passed" }, "rna_puzzle6_U75G76A77_on_thread1": { "log": "", "state": "passed" }, "rna_puzzle6_j67_into_p6p7rigidbody_thread1": { "log": "", "state": "passed" }, "rna_ribosome_tether": { "log": "", "state": "passed" }, "rna_score": { "log": "", "state": "passed" }, "rna_screen_phosphates": { "log": "", "state": "passed" }, "rna_suitename": { "log": "", "state": "passed" }, "rnp_ddg_calc_mut": { "log": "", "state": "passed" }, "rnp_ddg_calc_setup": { "log": "", "state": "passed" }, "rnp_ddg_calc_wt": { "log": "", "state": "passed" }, "rnp_ddg_finalize": { "log": "", "state": "passed" }, "rnp_ddg_relax_command_1": { "log": "", "state": "passed" }, "rnp_ddg_relax_command_2": { "log": "", "state": "passed" }, "rnp_ddg_relax_finalize": { "log": "", "state": "passed" }, "rnp_ddg_relax_setup": { "log": "", "state": "passed" }, "rollmover": { "log": "", "state": "passed" }, "rosetta_scripts_hbond_options": { "log": "", "state": "passed" }, "rosetta_scripts_include": { "log": "", "state": "passed" }, "rosetta_scripts_info": { "log": "", "state": "passed" }, "rosetta_scripts_jd3": { "log": "", "state": "passed" }, "rosetta_scripts_loops": { "log": "", "state": "passed" }, "rosetta_scripts_setup": { "log": "", "state": "passed" }, "rosie_ligand_docking": { "log": "", "state": "passed" }, "rotamer_probability": { "log": "", "state": "passed" }, "rotamer_recovery": { "log": "", "state": "passed" }, "rotamer_recovery_compare_two_structures": { "log": "", "state": "passed" }, "rs_flexbbmoves": { "log": "", "state": "passed" }, "rs_loophash": { "log": "", "state": "passed" }, "sample_seq_from_probs": { "log": "", "state": "passed" }, "sasa_metric_options": { "log": "", "state": "passed" }, "score12_docking": { "log": "", "state": "passed" }, "score_aln": { "log": "", "state": "passed" }, "score_jd2": { "log": "", "state": "passed" }, "score_only_silence": { "log": "", "state": "passed" }, "sdf_reader": { "log": "", "state": "passed" }, "secondary_structure_output": { "log": "", "state": "passed" }, "seed_ensemble_JD2_JI": { "log": "", "state": "passed" }, "select_best_unique_ligand_poses": { "log": "", "state": "passed" }, "selected_residue_count_metric": { "log": "", "state": "passed" }, "sequence_profile_constraints": { "log": "", "state": "passed" }, "sequence_recovery": { "log": "", "state": "passed" }, "sequence_tolerance": { "log": "", "state": "passed" }, "set_torsion": { "log": "", "state": "passed" }, "shobuns": { "log": "", "state": "passed" }, "silent2frag": { "log": "", "state": "passed" }, "sim_cryo": { "log": "", "state": "passed" }, "simple_cycpep_predict": { "log": "", "state": "passed" }, "simple_cycpep_predict_1_4_bbmb": { "log": "", "state": "passed" }, "simple_cycpep_predict_angle": { "log": "", "state": "passed" }, "simple_cycpep_predict_anglelength": { "log": "", "state": "passed" }, "simple_cycpep_predict_beta_thioether_lariat": { "log": "", "state": "passed" }, "simple_cycpep_predict_bondangle_bondlength": { "log": "", "state": "passed" }, "simple_cycpep_predict_cartesian": { "log": "", "state": "passed" }, "simple_cycpep_predict_cispro": { "log": "", "state": "passed" }, "simple_cycpep_predict_cterm_isopeptide_lariat": { "log": "", "state": "passed" }, "simple_cycpep_predict_cterm_isopeptide_lariat_tailless": { "log": "", "state": "passed" }, "simple_cycpep_predict_design": { "log": "", "state": "passed" }, "simple_cycpep_predict_lanthionine": { "log": "", "state": "passed" }, "simple_cycpep_predict_nmethyl": { "log": "", "state": "passed" }, "simple_cycpep_predict_nterm_isopeptide_lariat": { "log": "", "state": "passed" }, "simple_cycpep_predict_nterm_isopeptide_lariat_tailless": { "log": "", "state": "passed" }, "simple_cycpep_predict_octahedral_metal": { "log": "", "state": "passed" }, "simple_cycpep_predict_peptoid": { "log": "", "state": "passed" }, "simple_cycpep_predict_setting": { "log": "", "state": "passed" }, "simple_cycpep_predict_sidechain_isopeptide": { "log": "", "state": "passed" }, "simple_cycpep_predict_sidechain_isopeptide_reverse": { "log": "", "state": "passed" }, "simple_cycpep_predict_square_planar_metal": { "log": "", "state": "passed" }, "simple_cycpep_predict_square_pyramidal_metal": { "log": "", "state": "passed" }, "simple_cycpep_predict_symm_gly": { "log": "", "state": "passed" }, "simple_cycpep_predict_symmetric_sampling": { "log": "", "state": "passed" }, "simple_cycpep_predict_tbmb": { "log": "", "state": "passed" }, "simple_cycpep_predict_terminal_disulfide": { "log": "", "state": "passed" }, "simple_cycpep_predict_terminal_disulfide_internal_permutations": { "log": "", "state": "passed" }, "simple_cycpep_predict_terminal_disulfide_tails": { "log": "", "state": "passed" }, "simple_cycpep_predict_terminal_disulfide_tails_2": { "log": "", "state": "passed" }, "simple_cycpep_predict_tetrahedral_metal": { "log": "", "state": "passed" }, "simple_cycpep_predict_tetrahedral_metal_asp": { "log": "", "state": "passed" }, "simple_cycpep_predict_thioether_cis_sampling": { "log": "", "state": "passed" }, "simple_cycpep_predict_thioether_lariat": { "log": "", "state": "passed" }, "simple_cycpep_predict_tma": { "log": "", "state": "passed" }, "simple_cycpep_predict_trigonal_planar_metal": { "log": "", "state": "passed" }, "simple_cycpep_predict_trigonal_pyramidal_metal": { "log": "", "state": "passed" }, "simple_dna_test": { "log": "", "state": "passed" }, "simple_glycosylation": { "log": "", "state": "passed" }, "simple_glycosylation_alternate_AAs": { "log": "", "state": "passed" }, "simple_grafting_movers": { "log": "", "state": "passed" }, "simple_hbondstoatom": { "log": "", "state": "passed" }, "simple_metric_cache": { "log": "", "state": "passed" }, "simple_metric_features": { "log": "", "state": "passed" }, "simple_metric_filter": { "log": "", "state": "passed" }, "simple_metrics": { "log": "", "state": "passed" }, "simple_metrics_b_factor": { "log": "", "state": "passed" }, "simple_metrics_in_protocols": { "log": "", "state": "passed" }, "simple_metrics_per_residue": { "log": "", "state": "passed" }, "site_constraint": { "log": "", "state": "passed" }, "small_molecule_lattice_dock": { "log": "", "state": "passed" }, "smallmover_resselector": { "log": "", "state": "passed" }, "smart_annealer": { "log": "", "state": "passed" }, "splice_in_4loops_longer": { "log": "", "state": "passed" }, "splice_in_4loops_shorter": { "log": "", "state": "passed" }, "splice_out_H1_H2_longer": { "log": "", "state": "passed" }, "splice_out_H1_H2_same": { "log": "", "state": "passed" }, "splice_out_H1_H2_shorter": { "log": "", "state": "passed" }, "splice_out_H3_longer": { "log": "", "state": "passed" }, "splice_out_H3_same": { "log": "", "state": "passed" }, "splice_out_H3_shorter": { "log": "", "state": "passed" }, "splice_out_L1_L2_longer": { "log": "", "state": "passed" }, "splice_out_L1_L2_same": { "log": "", "state": "passed" }, "splice_out_L1_L2_shorter": { "log": "", "state": "passed" }, "splice_out_L3_longer": { "log": "", "state": "passed" }, "splice_out_L3_same": { "log": "", "state": "passed" }, "splice_out_L3_shorter": { "log": "", "state": "passed" }, "startfrom_file": { "log": "", "state": "passed" }, "stepwise_lores": { "log": "", "state": "passed" }, "stored_residue_subset": { "log": "", "state": "passed" }, "struc_set_fragment_picker": { "log": "", "state": "passed" }, "super_aln": { "log": "", "state": "passed" }, "supercharge": { "log": "", "state": "passed" }, "surface_docking": { "log": "", "state": "passed" }, "swa_protein_CCDclose": { "log": "", "state": "passed" }, "swa_protein_build_at_Cterminus": { "log": "", "state": "passed" }, "swa_protein_build_at_Nterminus": { "log": "", "state": "passed" }, "swa_protein_cluster": { "log": "", "state": "passed" }, "swa_protein_combine_loops": { "log": "", "state": "passed" }, "swa_protein_loop_sampler": { "log": "", "state": "passed" }, "swa_protein_prepack": { "log": "", "state": "passed" }, "swa_rna_erraser": { "log": "", "state": "passed" }, "swa_rna_gagu_01_append": { "log": "", "state": "passed" }, "swa_rna_gagu_02_prepend": { "log": "", "state": "passed" }, "swa_rna_gagu_03_append_to_silent": { "log": "", "state": "passed" }, "swa_rna_gagu_04_clustering": { "log": "", "state": "passed" }, "swa_rna_gagu_05_prepend_to_5primeterminus": { "log": "", "state": "passed" }, "swa_rna_gagu_06_append_to_3primeterminus": { "log": "", "state": "passed" }, "swa_rna_gagu_07_prepend_dinucleotide": { "log": "", "state": "passed" }, "swa_rna_gagu_08_append_dinucleotide": { "log": "", "state": "passed" }, "swa_rna_gagu_09_sample_virtual_ribose": { "log": "", "state": "passed" }, "swa_rna_gagu_10_prepend_and_ccd_close": { "log": "", "state": "passed" }, "swa_rna_gagu_11_append_and_ccd_close": { "log": "", "state": "passed" }, "swa_rna_gagu_12_helix_addition": { "log": "", "state": "passed" }, "swa_rna_gagu_13_chunk_combination_and_closure": { "log": "", "state": "passed" }, "swa_rna_gagu_14_combine_long_loop_filtering": { "log": "", "state": "passed" }, "swa_rna_gagu_15_combine_long_loop_sampling": { "log": "", "state": "passed" }, "swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide": { "log": "", "state": "passed" }, "swa_rna_gagu_17_append_floating_base": { "log": "", "state": "passed" }, "swa_rna_gagu_18_rebuild_bulge": { "log": "", "state": "passed" }, "swa_rna_gagu_19_prepend_floating_base_by_jump": { "log": "", "state": "passed" }, "swa_rna_gagu_20_append_floating_base_by_jump": { "log": "", "state": "passed" }, "swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump": { "log": "", "state": "passed" }, "swa_rna_gagu_22_prepend_and_kic_close": { "log": "", "state": "passed" }, "swa_rna_gagu_23_append_and_kic_close": { "log": "", "state": "passed" }, "swa_rna_loop_clusterer": { "log": "", "state": "passed" }, "swa_rna_loop_sampler": { "log": "", "state": "passed" }, "sweep_respair_energies": { "log": "", "state": "passed" }, "swm_add_rosettascripts": { "log": "", "state": "passed" }, "swm_beta_peptide_loop": { "log": "", "state": "passed" }, "swm_build_full_model": { "log": "", "state": "passed" }, "swm_dna_bridge": { "log": "", "state": "passed" }, "swm_dna_loop": { "log": "", "state": "passed" }, "swm_general_polymer_sampler": { "log": "", "state": "passed" }, "swm_l_rna": { "log": "", "state": "passed" }, "swm_protein_CCDmove": { "log": "", "state": "passed" }, "swm_protein_from_scratch": { "log": "", "state": "passed" }, "swm_protein_loop_sampler": { "log": "", "state": "passed" }, "swm_protein_move_inside_coiledcoil_by_bond": { "log": "", "state": "passed" }, "swm_protein_move_inside_helix_by_bond": { "log": "", "state": "passed" }, "swm_protein_preminimize": { "log": "", "state": "passed" }, "swm_rna_base_pair_constraints": { "log": "", "state": "passed" }, "swm_rna_checkpoint_partition": { "log": "", "state": "passed" }, "swm_rna_fourwayjunction": { "log": "", "state": "passed" }, "swm_rna_loop_design": { "log": "", "state": "passed" }, "swm_rna_move_align_dock": { "log": "", "state": "passed" }, "swm_rna_move_inside_helix_by_bond": { "log": "", "state": "passed" }, "swm_rna_move_inside_helix_by_jump": { "log": "", "state": "passed" }, "swm_rna_move_two_strands": { "log": "", "state": "passed" }, "swm_rna_nickedhelix": { "log": "", "state": "passed" }, "swm_rna_protonated_adenosine": { "log": "", "state": "passed" }, "swm_rna_singleloop": { "log": "", "state": "passed" }, "swm_rna_srl_triplet": { "log": "", "state": "passed" }, "symm_disulfidize": { "log": "", "state": "passed" }, "symm_rotamer_boltzmann": { "log": "", "state": "passed" }, "symmetric_cycpep_align_and_symmetrize": { "log": "", "state": "passed" }, "symmetric_docking": { "log": "", "state": "passed" }, "symmetrical_residue_selector": { "log": "", "state": "passed" }, "symmetry_data_resource": { "log": "", "state": "passed" }, "symmetry_multicomponent": { "log": "", "state": "passed" }, "target_clash": { "log": "", "state": "passed" }, "task_selector": { "log": "", "state": "passed" }, "tcrmodel": { "log": "", "state": "passed" }, "template_features": { "log": "", "state": "passed" }, "tensorflow_connection_test": { "log": "", "state": "passed" }, "tensorflow_manager": { "log": "", "state": "passed" }, "tensorflow_simple_model_load_and_evaluate": { "log": "", "state": "passed" }, "test1_benchmark": { "log": "", "state": "passed" }, "test_computed_saxs_spectrum": { "log": "", "state": "passed" }, "test_d_l_readin": { "log": "", "state": "passed" }, "test_degreaser": { "log": "", "state": "passed" }, "test_energy_method_options": { "log": "", "state": "passed" }, "test_idealize": { "log": "", "state": "passed" }, "test_rosetta_thread_manager_advanced_API": { "log": "", "state": "passed" }, "test_rosetta_thread_manager_basic_API": { "log": "", "state": "passed" }, "thermal_sampler": { "log": "", "state": "passed" }, "thread_local_tracers_check": { "log": "", "state": "passed" }, "threefold_symm_peptide_design": { "log": "", "state": "passed" }, "threefoldlinkermover_tbmb": { "log": "", "state": "passed" }, "threefoldlinkermover_tbmb_symmetric": { "log": "", "state": "passed" }, "tna_base_pairs": { "log": "", "state": "passed" }, "torsion_restricted_sampling": { "log": "", "state": "passed" }, "trRosetta": { "log": "", "state": "passed" }, "trRosettaConstraintGenerator": { "log": "", "state": "passed" }, "trRosettaConstraintGenerator_rosettascripts": { "log": "", "state": "passed" }, "trRosettaProtocolMover": { "log": "", "state": "passed" }, "trRosettaProtocolMover_rosettascripts": { "log": "", "state": "passed" }, "trRosettaProtocolMover_rosettascripts_diskwrite": { "log": "", "state": "passed" }, "trRosettaProtocolMover_rosettascripts_diskwrite_only": { "log": "", "state": "passed" }, "trRosetta_test_predict": { "log": "", "state": "passed" }, "trRosetta_test_predict_ubiquitin": { "log": "", "state": "passed" }, "trRosetta_test_predict_ubiquitin_cst_file_write": { "log": "", "state": "passed" }, "trRosetta_test_predict_ubiquitin_cst_file_write_only": { "log": "", "state": "passed" }, "trRosetta_test_predict_ubiquitin_init_by_bins": { "log": "", "state": "passed" }, "unfolded_state_energy_calc": { "log": "", "state": "passed" }, "validate_database": { "log": "", "state": "passed" }, "vancomycin": { "log": "", "state": "passed" }, "vip": { "log": "", "state": "passed" }, "voids_penalty_energy_design": { "log": "", "state": "passed" }, "voids_penalty_energy_design_symmetry": { "log": "", "state": "passed" }, "write_mol_file": { "log": "", "state": "passed" }, "zinc_heterodimer": { "log": "", "state": "passed" }, "zinc_homodimer_design": { "log": "", "state": "passed" }, "zinc_homodimer_setup": { "log": "", "state": "passed" } } }

integration test suite description

integration test suite

(plain)

debug

release_debug

release_debug_with_symbols

mpi

pytorch

tensorflow

thread