ERROR: benchmark.py script terminated with non-zero exit-code, execution log:
Running Singularity container...
Command line: singularity exec --contain --cleanenv --no-home --bind /scratch/benchmark/nobu-4/w/.singularity.home:/home/benchmark --bind /home/benchmark/release:/home/benchmark/release_root --bind /home/benchmark/prefix/fragment_picking_database/2019.05.19:/home/benchmark/fragment_picking_database --bind /scratch/benchmark/nobu-4/w/T/commits-20624.847355.ubuntu.clang.cxx11thread.serialization.python313.release.PyRosetta.conda.Release.0:/home/benchmark/working_dir --bind /scratch/benchmark/nobu-4/w/rosetta/commits/rosetta:/home/benchmark/rosetta --bind /scratch/benchmark/nobu-4/w/prefix/ubuntu:/home/benchmark/prefix --hostname nobu-4 --workdir /scratch/benchmark/nobu-4/w/.singularity.tmpfs --pwd /home/benchmark/rosetta/tests/benchmark /scratch/benchmark/nobu-4/b3/back/../../w/.singularity.images/ubuntu.simg python3 ./benchmark.py --setup /home/benchmark/working_dir/.execution.setup.json <<<''
Loading test from: tests/release.py, suite+test: 'release.PyRosetta.conda.Release', test: 'PyRosetta.conda.Release'
Found test suite description in file: 'tests/release.md'
Running PyRosetta conda release test: at working_dir='/home/benchmark/working_dir' with rosetta_dir=/home/benchmark/rosetta, platform={'compiler': 'clang', 'extras': ['cxx11thread', 'serialization'], 'os': 'ubuntu', 'python': '3.13'}, jobs=64, memory=256GB, hpc_driver=MultiCore_HPC_Driver<>...
Installing MiniConda, using https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh...
Installing conda...
cd /home/benchmark/prefix/nobu-4/ubuntu/build-conda && unset __PYVENV_LAUNCHER__ && unset PYTHONHOME && unset PYTHONPATH && bash /home/benchmark/prefix/nobu-4/ubuntu/build-conda/Miniconda3-latest-Linux-x86_64.sh -b -p /home/benchmark/prefix/nobu-4/ubuntu/conda
PREFIX=/home/benchmark/prefix/nobu-4/ubuntu/conda
Unpacking payload ...
Installing base environment...
Preparing transaction: ...working... done
Executing transaction: ...working... done
installation finished.
Removing `defaults` channel conda-forge...
cd /home/benchmark/prefix/nobu-4/ubuntu/build-conda && unset __PYVENV_LAUNCHER__ && unset PYTHONHOME && unset PYTHONPATH && . /home/benchmark/prefix/nobu-4/ubuntu/conda/bin/activate && conda config --remove channels defaults
CondaKeyError: 'channels': value 'defaults' not present in config
Encounter error while executing: cd /home/benchmark/prefix/nobu-4/ubuntu/build-conda && unset __PYVENV_LAUNCHER__ && unset PYTHONHOME && unset PYTHONPATH && . /home/benchmark/prefix/nobu-4/ubuntu/conda/bin/activate && conda config --remove channels defaults
Encounter error while executing: cd /home/benchmark/prefix/nobu-4/ubuntu/build-conda && unset __PYVENV_LAUNCHER__ && unset PYTHONHOME && unset PYTHONPATH && . /home/benchmark/prefix/nobu-4/ubuntu/conda/bin/activate && conda config --remove channels defaults
CondaKeyError: 'channels': value 'defaults' not present in config
Traceback (most recent call last):
File "./benchmark.py", line 422, in <module>
if __name__ == "__main__": main(sys.argv)
File "./benchmark.py", line 419, in main
run_test(setup)
File "./benchmark.py", line 335, in run_test
res = test_suite.run(test=test_name, repository_root=repository_root, working_dir=working_dir, platform=dict(setup.platform), config=setup.config, hpc_driver=hpc_driver, verbose=True, debug=setup.debug)
File "tests/release.py", line 1285, in run
elif test =='PyRosetta.conda.Release': return pyrosetta_conda_release('Release', repository_root, working_dir, platform, config=config, hpc_driver=hpc_driver, verbose=verbose, debug=debug)
File "tests/release.py", line 1260, in pyrosetta_conda_release
def pyrosetta_conda_release(*args, **kwargs): return native_libc_pyrosetta_conda_release(*args, **kwargs)
File "tests/release.py", line 672, in native_libc_pyrosetta_conda_release
conda = setup_conda_virtual_environment(working_dir, platform, config, packages='setuptools')
File "tests/__init__.py", line 1046, in setup_conda_virtual_environment
conda_root_env = _get_path_to_conda_root(platform, config)
File "tests/__init__.py", line 1027, in _get_path_to_conda_root
execute(f'Removing `defaults` channel {channels}...', f'cd {build_prefix} && {activate} && conda config --remove channels defaults' )
File "tests/__init__.py", line 277, in execute
raise BenchmarkError('\nEncounter error while executing: ' + command_line + '\n' + output)
test_suite.BenchmarkError:
Encounter error while executing: cd /home/benchmark/prefix/nobu-4/ubuntu/build-conda && unset __PYVENV_LAUNCHER__ && unset PYTHONHOME && unset PYTHONPATH && . /home/benchmark/prefix/nobu-4/ubuntu/conda/bin/activate && conda config --remove channels defaults
CondaKeyError: 'channels': value 'defaults' not present in config
ERROR: Benchmark back-end script terminates abnormally, marking test state as 'script failed'!