Test №845890

Test: mac.clang.python39.integration 「view this page in B3 βῆτα server」
Branch: rosetta:commits 「revision: №20606」
Test files: 「file-system-view」「file-list-view」
Daemon: takeshi Started at: 2024-11-11 13:38:53 Run time: 0:50:08 State: failed

Failed sub-tests (click for more details):
app_exception_handling blob_finder code_template_tests_src output_schema sim_cryo

Test Log

Compiling: find bin -type l ! -name ".*" -exec rm {} \; ; /Volumes/scratch/b3.w/prefix/mac/hikaru-2/mac/python-3.9.clang/707eb77cedeac3e91130adc5f9ccf882/bin/python3.9 ./scons.py bin mode=release cxx=clang extras= -j32 Running: unset __PYVENV_LAUNCHER__ && . /Volumes/scratch/b3.w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/activate && cd /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration && python ./integration.py --mode=release --compiler=clang --extras= --timeout=480 -j32 --skip-comparison --additional_flags "-in:path:database_cache_dir /Volumes/scratch/b3.w/rosetta/commits/rosetta/.database-binaries/macclangrelease" Running integration script... Command line: unset __PYVENV_LAUNCHER__ && . /Volumes/scratch/b3.w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/activate && cd /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration && python ./integration.py --mode=release --compiler=clang --extras= --timeout=480 -j32 --skip-comparison --additional_flags "-in:path:database_cache_dir /Volumes/scratch/b3.w/rosetta/commits/rosetta/.database-binaries/macclangrelease" Using Rosetta source dir at: /Volumes/scratch/b3.w/rosetta/commits/rosetta/source Using Rosetta database dir at:/Volumes/scratch/b3.w/rosetta/commits/rosetta/database Current Versions Tested: MAIN: abb8bcc7b6753474405e8a491aa42be38b5a4b35 TOOLS: b0af2521cbed1f2bde597ef1c5406efa376a6f85 DEMOS: 48c9239db73b9a8c828954d9215c983b9f144c92 Python: `/Users/benchmark/scratch/w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/python` Outdir: new Running Test voids_penalty_energy_design_symmetry ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/voids_penalty_energy_design_symmetry/command.sh No correct command.sh file found for trRosetta_test_predict_ubiquitin_init_by_bins. Skipping. Running Test voids_penalty_energy_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/voids_penalty_energy_design/command.sh Running Test trRosetta_test_predict_ubiquitin_cst_file_write_only ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosetta_test_predict_ubiquitin_cst_file_write_only/command.sh Running Test trRosetta_test_predict_ubiquitin_cst_file_write ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosetta_test_predict_ubiquitin_cst_file_write/command.sh No correct command.sh file found for trRosetta_test_predict. Skipping. Running Test trRosetta_test_predict_ubiquitin ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosetta_test_predict_ubiquitin/command.sh Running Test trRosettaProtocolMover_rosettascripts_diskwrite_only ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosettaProtocolMover_rosettascripts_diskwrite_only/command.sh Running Test trRosettaProtocolMover_rosettascripts_diskwrite ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosettaProtocolMover_rosettascripts_diskwrite/command.sh No correct command.sh file found for trRosettaProtocolMover. Skipping. Running Test trRosettaProtocolMover_rosettascripts ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosettaProtocolMover_rosettascripts/command.sh No correct command.sh file found for trRosettaConstraintGenerator. Skipping. No correct command.sh file found for trRosetta. Skipping. Running Test trRosettaConstraintGenerator_rosettascripts ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/trRosettaConstraintGenerator_rosettascripts/command.sh Running Test tna_base_pairs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/tna_base_pairs/command.sh No correct command.sh file found for test_rosetta_thread_manager_basic_API. Skipping. No correct command.sh file found for test_rosetta_thread_manager_advanced_API. Skipping. Running Test thread_local_tracers_check ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/thread_local_tracers_check/command.sh Running Test test_energy_method_options ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/test_energy_method_options/command.sh No correct command.sh file found for tensorflow_simple_model_load_and_evaluate. Skipping. No correct command.sh file found for tensorflow_manager. Skipping. No correct command.sh file found for tensorflow_connection_test. Skipping. Running Test test_degreaser ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/test_degreaser/command.sh Running Test tcrmodel ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/tcrmodel/command.sh Running Test target_clash ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/target_clash/command.sh Running Test swm_rna_checkpoint_partition ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_checkpoint_partition/command.sh Running Test swm_rna_base_pair_constraints ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_base_pair_constraints/command.sh Running Test swm_general_polymer_sampler ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_general_polymer_sampler/command.sh Running Test swm_dna_loop ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_dna_loop/command.sh Running Test swm_dna_bridge ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_dna_bridge/command.sh No correct command.sh file found for smart_annealer. Skipping. Running Test swm_add_rosettascripts ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_add_rosettascripts/command.sh Running Test small_molecule_lattice_dock ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/small_molecule_lattice_dock/command.sh Running Test simple_metrics_per_residue ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metrics_per_residue/command.sh Running Test simple_metrics_in_protocols ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metrics_in_protocols/command.sh Running Test simple_metrics_b_factor ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metrics_b_factor/command.sh Running Test simple_metrics ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metrics/command.sh Running Test simple_metric_filter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metric_filter/command.sh Running Test simple_metric_features ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metric_features/command.sh Running Test simple_metric_cache ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metric_cache/command.sh Running Test simple_grafting_movers ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_grafting_movers/command.sh Running Test simple_glycosylation_alternate_AAs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_glycosylation_alternate_AAs/command.sh Running Test simple_cycpep_predict_trigonal_pyramidal_metal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_trigonal_pyramidal_metal/command.sh Finished trRosettaConstraintGenerator_rosettascripts in 1 seconds [~ 44 test (5.412054120541206%) started, 769 in queue, 32 running] Running Test simple_cycpep_predict_trigonal_planar_metal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_trigonal_planar_metal/command.sh sed: 1: "threadlocal_tracers.txt": undefined label 'hreadlocal_tracers.txt' Finished thread_local_tracers_check in 2 seconds [~ 45 test (5.535055350553505%) started, 768 in queue, 32 running] Finished test_energy_method_options in 2 seconds [~ 45 test (5.535055350553505%) started, 768 in queue, 31 running] Running Test simple_cycpep_predict_tma ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_tma/command.sh Running Test simple_cycpep_predict_thioether_lariat ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_thioether_lariat/command.sh Finished trRosettaProtocolMover_rosettascripts_diskwrite_only in 5 seconds [~ 47 test (5.781057810578106%) started, 766 in queue, 32 running] Finished trRosettaProtocolMover_rosettascripts_diskwrite in 5 seconds [~ 47 test (5.781057810578106%) started, 766 in queue, 31 running] Finished trRosettaProtocolMover_rosettascripts in 5 seconds [~ 47 test (5.781057810578106%) started, 766 in queue, 30 running] Running Test simple_cycpep_predict_thioether_cis_sampling ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_thioether_cis_sampling/command.sh Running Test simple_cycpep_predict_tetrahedral_metal_asp ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_tetrahedral_metal_asp/command.sh Running Test simple_cycpep_predict_tetrahedral_metal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_tetrahedral_metal/command.sh Finished trRosetta_test_predict_ubiquitin_cst_file_write_only in 11 seconds [~ 50 test (6.150061500615006%) started, 763 in queue, 32 running] Finished trRosetta_test_predict_ubiquitin_cst_file_write in 11 seconds [~ 50 test (6.150061500615006%) started, 763 in queue, 31 running] Finished trRosetta_test_predict_ubiquitin in 11 seconds [~ 50 test (6.150061500615006%) started, 763 in queue, 30 running] Running Test simple_cycpep_predict_terminal_disulfide_tails_2 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_tails_2/command.sh Running Test simple_cycpep_predict_terminal_disulfide_tails ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_tails/command.sh Running Test simple_cycpep_predict_terminal_disulfide_internal_permutations ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_internal_permutations/command.sh Finished target_clash in 13 seconds [~ 53 test (6.519065190651906%) started, 760 in queue, 32 running] Running Test simple_cycpep_predict_terminal_disulfide ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide/command.sh Finished tna_base_pairs in 14 seconds [~ 54 test (6.642066420664206%) started, 759 in queue, 32 running] Running Test simple_cycpep_predict_square_pyramidal_metal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_square_pyramidal_metal/command.sh Finished swm_add_rosettascripts in 15 seconds [~ 55 test (6.765067650676507%) started, 758 in queue, 32 running] Running Test simple_cycpep_predict_square_planar_metal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_square_planar_metal/command.sh Finished tcrmodel in 17 seconds [~ 56 test (6.888068880688807%) started, 757 in queue, 32 running] Running Test simple_cycpep_predict_sidechain_isopeptide_reverse ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_sidechain_isopeptide_reverse/command.sh Finished simple_metrics_in_protocols in 18 seconds [~ 57 test (7.011070110701107%) started, 756 in queue, 32 running] Running Test simple_cycpep_predict_sidechain_isopeptide ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_sidechain_isopeptide/command.sh Finished simple_metric_cache in 18 seconds [~ 58 test (7.134071340713407%) started, 755 in queue, 32 running] Running Test simple_cycpep_predict_peptoid ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_peptoid/command.sh Finished swm_rna_checkpoint_partition in 19 seconds [~ 59 test (7.2570725707257075%) started, 754 in queue, 32 running] Running Test simple_cycpep_predict_octahedral_metal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_octahedral_metal/command.sh Finished simple_cycpep_predict_terminal_disulfide_tails in 8 seconds [~ 60 test (7.380073800738008%) started, 753 in queue, 32 running] Running Test simple_cycpep_predict_nterm_isopeptide_lariat_tailless ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_nterm_isopeptide_lariat_tailless/command.sh Finished simple_metric_filter in 20 seconds [~ 61 test (7.503075030750307%) started, 752 in queue, 32 running] Running Test simple_cycpep_predict_nterm_isopeptide_lariat ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_nterm_isopeptide_lariat/command.sh /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_metric_features/command.sh: line 12: dump.sql: No such file or directory Finished simple_metric_features in 20 seconds [~ 62 test (7.626076260762607%) started, 751 in queue, 32 running] Running Test simple_cycpep_predict_lanthionine ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_lanthionine/command.sh Finished simple_cycpep_predict_terminal_disulfide in 7 seconds [~ 63 test (7.749077490774908%) started, 750 in queue, 32 running] Running Test simple_cycpep_predict_cterm_isopeptide_lariat_tailless ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_cterm_isopeptide_lariat_tailless/command.sh Finished simple_cycpep_predict_tetrahedral_metal_asp in 18 seconds [~ 64 test (7.872078720787208%) started, 749 in queue, 32 running] Running Test simple_cycpep_predict_cterm_isopeptide_lariat ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_cterm_isopeptide_lariat/command.sh Finished simple_metrics_b_factor in 25 seconds [~ 65 test (7.995079950799508%) started, 748 in queue, 32 running] Finished simple_cycpep_predict_terminal_disulfide_internal_permutations in 13 seconds [~ 65 test (7.995079950799508%) started, 748 in queue, 31 running] Running Test simple_cycpep_predict_bondangle_bondlength ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_bondangle_bondlength/command.sh Running Test simple_cycpep_predict_beta_thioether_lariat ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_beta_thioether_lariat/command.sh Finished simple_grafting_movers in 25 seconds [~ 67 test (8.241082410824108%) started, 746 in queue, 32 running] Finished simple_glycosylation_alternate_AAs in 25 seconds [~ 67 test (8.241082410824108%) started, 746 in queue, 31 running] Running Test simple_cycpep_predict_1_4_bbmb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_1_4_bbmb/command.sh Running Test sim_cryo ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sim_cryo/command.sh Finished swm_general_polymer_sampler in 26 seconds [~ 69 test (8.487084870848708%) started, 744 in queue, 32 running] Running Test selected_residue_count_metric ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/selected_residue_count_metric/command.sh Finished simple_cycpep_predict_thioether_cis_sampling in 22 seconds [~ 70 test (8.61008610086101%) started, 743 in queue, 32 running] Running Test sasa_metric_options ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sasa_metric_options/command.sh Finished simple_cycpep_predict_thioether_lariat in 25 seconds [~ 71 test (8.733087330873309%) started, 742 in queue, 32 running] Running Test sample_seq_from_probs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sample_seq_from_probs/command.sh Finished simple_cycpep_predict_sidechain_isopeptide_reverse in 11 seconds [~ 72 test (8.85608856088561%) started, 741 in queue, 32 running] Running Test rosetta_scripts_jd3 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosetta_scripts_jd3/command.sh Finished simple_cycpep_predict_lanthionine in 8 seconds [~ 73 test (8.979089790897909%) started, 740 in queue, 32 running] Running Test rnp_ddg_relax_setup ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_relax_setup/command.sh PYTHON IS /Users/benchmark/scratch/w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/python Finished rnp_ddg_relax_setup in 0 seconds [~ 74 test (9.102091020910208%) started, 739 in queue, 32 running] Running Test rnp_ddg_relax_finalize ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_relax_finalize/command.sh PYTHON IS /Users/benchmark/scratch/w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/python Finished small_molecule_lattice_dock in 30 seconds [~ 75 test (9.22509225092251%) started, 738 in queue, 32 running] Finished rnp_ddg_relax_finalize in 0 seconds [~ 75 test (9.22509225092251%) started, 738 in queue, 31 running] Running Test rnp_ddg_relax_command_2 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_relax_command_2/command.sh Running Test rnp_ddg_relax_command_1 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_relax_command_1/command.sh Finished simple_cycpep_predict_cterm_isopeptide_lariat_tailless in 11 seconds [~ 77 test (9.47109471094711%) started, 736 in queue, 32 running] Running Test rnp_ddg_finalize ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_finalize/command.sh PYTHON IS /Users/benchmark/scratch/w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/python Finished simple_cycpep_predict_sidechain_isopeptide in 14 seconds [~ 78 test (9.59409594095941%) started, 735 in queue, 32 running] Finished simple_cycpep_predict_nterm_isopeptide_lariat in 12 seconds [~ 78 test (9.59409594095941%) started, 735 in queue, 31 running] Running Test rnp_ddg_calc_wt ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_calc_wt/command.sh Running Test rnp_ddg_calc_setup ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_calc_setup/command.sh PYTHON is /Users/benchmark/scratch/w/prefix/mac/hikaru-2/mac/python_virtual_environments/python-3.9/70fb5a411fc5470c895f6d4975b66fbe/bin/python Finished simple_cycpep_predict_nterm_isopeptide_lariat_tailless in 12 seconds [~ 80 test (9.84009840098401%) started, 733 in queue, 32 running] Finished rnp_ddg_finalize in 0 seconds [~ 80 test (9.84009840098401%) started, 733 in queue, 31 running] Running Test rnp_ddg_calc_mut ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rnp_ddg_calc_mut/command.sh Running Test rna_predict_chem_map ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_predict_chem_map/command.sh Finished rnp_ddg_calc_setup in 0 seconds [~ 82 test (10.08610086100861%) started, 731 in queue, 32 running] Running Test rna_denovo_symm_hack ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_symm_hack/command.sh Finished simple_cycpep_predict_cterm_isopeptide_lariat in 10 seconds [~ 83 test (10.20910209102091%) started, 730 in queue, 32 running] Running Test rna_denovo_new_libs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_new_libs/command.sh Finished simple_cycpep_predict_square_planar_metal in 19 seconds [~ 84 test (10.33210332103321%) started, 729 in queue, 32 running] Running Test rna_denovo_new_FT_rna_two_chains ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_new_FT_rna_two_chains/command.sh Finished simple_cycpep_predict_peptoid in 19 seconds [~ 85 test (10.45510455104551%) started, 728 in queue, 32 running] Running Test rna_denovo_new_FT_RNP_2prot_dens ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_new_FT_RNP_2prot_dens/command.sh Finished rna_denovo_new_FT_rna_two_chains in 5 seconds [~ 86 test (10.578105781057811%) started, 727 in queue, 32 running] Running Test rna_denovo_new_FT_5P_j12_leadzyme ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_new_FT_5P_j12_leadzyme/command.sh Finished rnp_ddg_relax_command_1 in 12 seconds [~ 87 test (10.70110701107011%) started, 726 in queue, 32 running] Running Test rna_denovo_new_FT_2in_dens ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_new_FT_2in_dens/command.sh Finished selected_residue_count_metric in 16 seconds [~ 88 test (10.824108241082412%) started, 725 in queue, 32 running] Running Test rna_denovo_lariat ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_lariat/command.sh Finished sim_cryo in 17 seconds [~ 89 test (10.947109471094711%) started, 724 in queue, 32 running] Running Test rna_denovo_fragment_homology_exclusion ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_fragment_homology_exclusion/command.sh Finished simple_cycpep_predict_terminal_disulfide_tails_2 in 31 seconds [~ 90 test (11.07011070110701%) started, 723 in queue, 32 running] Running Test rna_denovo_dna_bridge ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_dna_bridge/command.sh Finished rna_predict_chem_map in 11 seconds [~ 91 test (11.193111931119311%) started, 722 in queue, 32 running] Running Test restype_converter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/restype_converter/command.sh Finished sample_seq_from_probs in 16 seconds [~ 92 test (11.31611316113161%) started, 721 in queue, 32 running] No correct command.sh file found for replica_docking. Skipping. Running Test res_lipo_ref2015_memb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/res_lipo_ref2015_memb/command.sh Finished simple_cycpep_predict_tma in 42 seconds [~ 94 test (11.562115621156211%) started, 719 in queue, 32 running] Running Test repeat_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/repeat_relax/command.sh Finished simple_cycpep_predict_trigonal_planar_metal in 46 seconds [~ 95 test (11.685116851168512%) started, 718 in queue, 32 running] Running Test repeat_propagate_v3 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/repeat_propagate_v3/command.sh Finished sasa_metric_options in 22 seconds [~ 96 test (11.808118081180812%) started, 717 in queue, 32 running] Running Test repeat_propagate_v2 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/repeat_propagate_v2/command.sh Finished test_degreaser in 50 seconds [~ 97 test (11.931119311193111%) started, 716 in queue, 32 running] No correct command.sh file found for recon_design_mpi. Skipping. Running Test repeat_propagate ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/repeat_propagate/command.sh Finished rna_denovo_new_FT_5P_j12_leadzyme in 12 seconds [~ 99 test (12.177121771217712%) started, 714 in queue, 32 running] Running Test recon_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/recon_design/command.sh Finished restype_converter in 9 seconds [~ 100 test (12.300123001230013%) started, 713 in queue, 32 running] Running Test read_polymeric_components ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/read_polymeric_components/command.sh Finished simple_cycpep_predict_1_4_bbmb in 29 seconds [~ 101 test (12.423124231242312%) started, 712 in queue, 32 running] Running Test rdkit_metrics ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rdkit_metrics/command.sh Finished simple_cycpep_predict_tetrahedral_metal in 53 seconds [~ 102 test (12.546125461254613%) started, 711 in queue, 32 running] Running Test pymol_cif ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pymol_cif/command.sh Finished simple_cycpep_predict_beta_thioether_lariat in 33 seconds [~ 103 test (12.669126691266912%) started, 710 in queue, 32 running] No correct command.sh file found for proteinMPNN_model_perplexity. Skipping. Running Test protocol_metric ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/protocol_metric/command.sh Finished read_polymeric_components in 6 seconds [~ 105 test (12.915129151291513%) started, 708 in queue, 32 running] Running Test pose_sewing ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pose_sewing/command.sh Finished simple_cycpep_predict_octahedral_metal in 42 seconds [~ 106 test (13.038130381303812%) started, 707 in queue, 32 running] Running Test polyaramid_test_trivial ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/polyaramid_test_trivial/command.sh Finished res_lipo_ref2015_memb in 17 seconds [~ 107 test (13.161131611316113%) started, 706 in queue, 32 running] Running Test pna_base_pairs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pna_base_pairs/command.sh Finished simple_cycpep_predict_bondangle_bondlength in 40 seconds [~ 108 test (13.284132841328413%) started, 705 in queue, 32 running] Running Test phosphorylation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/phosphorylation/command.sh Finished pymol_cif in 7 seconds [~ 109 test (13.407134071340714%) started, 704 in queue, 32 running] Running Test perturb_helical_bundle_setting ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/perturb_helical_bundle_setting/command.sh Finished repeat_propagate_v3 in 18 seconds [~ 110 test (13.530135301353013%) started, 703 in queue, 32 running] Running Test per_residue_solvent_exposure ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/per_residue_solvent_exposure/command.sh Finished repeat_propagate_v2 in 16 seconds [~ 111 test (13.653136531365314%) started, 702 in queue, 32 running] Running Test output_schema ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/output_schema/command.sh Finished repeat_propagate in 17 seconds [~ 112 test (13.776137761377614%) started, 701 in queue, 32 running] Running Test oligourea_predict ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/oligourea_predict/command.sh Finished per_residue_solvent_exposure in 2 seconds [~ 113 test (13.899138991389913%) started, 700 in queue, 32 running] Running Test oligourea_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/oligourea_design/command.sh Finished rna_denovo_new_libs in 37 seconds [~ 114 test (14.022140221402214%) started, 699 in queue, 32 running] Running Test netcharge_design_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/netcharge_design_symm/command.sh Finished rdkit_metrics in 17 seconds [~ 115 test (14.145141451414514%) started, 698 in queue, 32 running] Running Test netcharge_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/netcharge_design/command.sh Finished simple_metrics in 73 seconds [~ 116 test (14.268142681426815%) started, 697 in queue, 32 running] Running Test ncbb_packer_palette ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ncbb_packer_palette/command.sh Finished recon_design in 21 seconds [~ 117 test (14.391143911439114%) started, 696 in queue, 32 running] No correct command.sh file found for multithreaded_packrotamersmover. Skipping. No correct command.sh file found for multithreaded_interaction_graph_accuracy_symm. Skipping. No correct command.sh file found for multithreaded_interaction_graph_accuracy. Skipping. No correct command.sh file found for multithreaded_fixbb. Skipping. No correct command.sh file found for multithreaded_fastdesign. Skipping. Running Test mutate ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mutate/command.sh Finished output_schema in 7 seconds [~ 123 test (15.129151291512915%) started, 690 in queue, 32 running] Running Test multistage_rosetta_scripts_clustering ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/multistage_rosetta_scripts_clustering/command.sh Finished phosphorylation in 9 seconds [~ 124 test (15.252152521525215%) started, 689 in queue, 32 running] Running Test multistage_rosetta_scripts ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/multistage_rosetta_scripts/command.sh Finished protocol_metric in 17 seconds [~ 125 test (15.375153751537516%) started, 688 in queue, 32 running] Running Test mpil_load_implicit_lipids ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mpil_load_implicit_lipids/command.sh Finished rna_denovo_new_FT_2in_dens in 34 seconds [~ 126 test (15.498154981549815%) started, 687 in queue, 32 running] Running Test mpil_find_pore_bbarrel ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mpil_find_pore_bbarrel/command.sh Finished pna_base_pairs in 16 seconds [~ 127 test (15.621156211562116%) started, 686 in queue, 32 running] No correct command.sh file found for mpi_simple_cycpep_predict_computing_pnear_to_all. Skipping. No correct command.sh file found for mpi_simple_cycpep_predict_4level. Skipping. No correct command.sh file found for mpi_simple_cycpep_predict. Skipping. Running Test mpil_find_pore_ahelical ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mpil_find_pore_ahelical/command.sh Finished rna_denovo_new_FT_RNP_2prot_dens in 41 seconds [~ 131 test (16.113161131611317%) started, 682 in queue, 32 running] Running Test mp_span_ang_ref2015_memb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_span_ang_ref2015_memb/command.sh Finished rna_denovo_symm_hack in 46 seconds [~ 132 test (16.236162361623617%) started, 681 in queue, 32 running] Running Test mp_quick_relax_ref2015_memb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_quick_relax_ref2015_memb/command.sh Finished mpil_load_implicit_lipids in 4 seconds [~ 133 test (16.359163591635916%) started, 680 in queue, 32 running] Running Test mp_ligand_interface ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_ligand_interface/command.sh Finished voids_penalty_energy_design_symmetry in 81 seconds [~ 134 test (16.482164821648215%) started, 679 in queue, 32 running] Finished mutate in 6 seconds [~ 134 test (16.482164821648215%) started, 679 in queue, 31 running] Running Test mp_domain_assembly_FtsQ ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_domain_assembly_FtsQ/command.sh Running Test mp_domain_assembly ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_domain_assembly/command.sh Finished mpil_find_pore_ahelical in 3 seconds [~ 136 test (16.728167281672818%) started, 677 in queue, 32 running] Running Test mp_dock_ensemble ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_dock_ensemble/command.sh Finished mpil_find_pore_bbarrel in 5 seconds [~ 137 test (16.851168511685117%) started, 676 in queue, 32 running] Running Test molfile_to_params_polymer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/molfile_to_params_polymer/command.sh Finished perturb_helical_bundle_setting in 19 seconds [~ 138 test (16.974169741697416%) started, 675 in queue, 32 running] Running Test mmtfIO_score_test ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mmtfIO_score_test/command.sh Finished rosetta_scripts_jd3 in 58 seconds [~ 139 test (17.097170971709716%) started, 674 in queue, 32 running] Running Test mixed_monte_carlo ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mixed_monte_carlo/command.sh Finished oligourea_design in 19 seconds [~ 140 test (17.22017220172202%) started, 673 in queue, 32 running] Running Test mhc_epitope_nmer_preload ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mhc_epitope_nmer_preload/command.sh Finished oligourea_predict in 23 seconds [~ 141 test (17.343173431734318%) started, 672 in queue, 32 running] Running Test mhc_epitope ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mhc_epitope/command.sh Finished swm_dna_loop in 92 seconds [~ 142 test (17.466174661746617%) started, 671 in queue, 32 running] Finished pose_sewing in 31 seconds [~ 142 test (17.466174661746617%) started, 671 in queue, 31 running] Running Test make_mainchain_potential_symm_preproline ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_mainchain_potential_symm_preproline/command.sh Running Test make_mainchain_potential_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_mainchain_potential_symm/command.sh Finished repeat_relax in 48 seconds [~ 144 test (17.71217712177122%) started, 669 in queue, 32 running] Running Test make_mainchain_potential ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_mainchain_potential/command.sh Finished rnp_ddg_calc_wt in 61 seconds [~ 145 test (17.83517835178352%) started, 668 in queue, 32 running] Running Test loop_grower_N_term_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/loop_grower_N_term_symm/command.sh Finished ncbb_packer_palette in 21 seconds [~ 146 test (17.958179581795818%) started, 667 in queue, 32 running] Running Test ligand_motif_identification ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_motif_identification/command.sh Finished simple_cycpep_predict_trigonal_pyramidal_metal in 95 seconds [~ 147 test (18.081180811808117%) started, 666 in queue, 32 running] Running Test ligand_motif_discovery ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_motif_discovery/command.sh Finished mp_span_ang_ref2015_memb in 16 seconds [~ 148 test (18.204182041820417%) started, 665 in queue, 32 running] Running Test ligand_dock_cholesterol ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_dock_cholesterol/command.sh Finished mp_quick_relax_ref2015_memb in 16 seconds [~ 149 test (18.32718327183272%) started, 664 in queue, 32 running] Running Test job_definition_script_vars ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/job_definition_script_vars/command.sh Finished rna_denovo_fragment_homology_exclusion in 54 seconds [~ 150 test (18.45018450184502%) started, 663 in queue, 32 running] Running Test iphold ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/iphold/command.sh Finished simple_metrics_per_residue in 98 seconds [~ 151 test (18.57318573185732%) started, 662 in queue, 32 running] Finished make_mainchain_potential_symm_preproline in 5 seconds [~ 151 test (18.57318573185732%) started, 662 in queue, 31 running] Finished make_mainchain_potential_symm in 5 seconds [~ 151 test (18.57318573185732%) started, 662 in queue, 30 running] Running Test interface_energy ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/interface_energy/command.sh Running Test interaction_graph_summary_metric ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/interaction_graph_summary_metric/command.sh Running Test hydrate_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hydrate_relax/command.sh Finished mmtfIO_score_test in 13 seconds [~ 154 test (18.94218942189422%) started, 659 in queue, 32 running] Running Test hydrate ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hydrate/command.sh Finished multistage_rosetta_scripts_clustering in 23 seconds [~ 155 test (19.06519065190652%) started, 658 in queue, 32 running] Running Test homodimer_fnd_ref2015_memb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/homodimer_fnd_ref2015_memb/command.sh Finished mp_ligand_interface in 18 seconds [~ 156 test (19.18819188191882%) started, 657 in queue, 32 running] Running Test helical_bundle_predict_skipping_residues ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle_predict_skipping_residues/command.sh Finished multistage_rosetta_scripts in 27 seconds [~ 157 test (19.311193111931118%) started, 656 in queue, 32 running] Running Test helical_bundle_predict_sequence ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle_predict_sequence/command.sh Finished ligand_motif_identification in 7 seconds [~ 158 test (19.43419434194342%) started, 655 in queue, 32 running] Running Test helical_bundle_predict_psipred_with_helix_globals ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle_predict_psipred_with_helix_globals/command.sh Finished netcharge_design_symm in 32 seconds [~ 159 test (19.55719557195572%) started, 654 in queue, 32 running] Running Test helical_bundle_predict_psipred ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle_predict_psipred/command.sh Finished ligand_motif_discovery in 9 seconds [~ 160 test (19.68019680196802%) started, 653 in queue, 32 running] Running Test helical_bundle_predict ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle_predict/command.sh Finished interface_energy in 7 seconds [~ 161 test (19.80319803198032%) started, 652 in queue, 32 running] Running Test hbnet_energy_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbnet_energy_symm/command.sh Finished swm_rna_base_pair_constraints in 108 seconds [~ 162 test (19.92619926199262%) started, 651 in queue, 32 running] Running Test hbnet_energy_rosettascripts_linear ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbnet_energy_rosettascripts_linear/command.sh Finished mhc_epitope_nmer_preload in 22 seconds [~ 163 test (20.04920049200492%) started, 650 in queue, 32 running] Running Test hbnet_energy ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbnet_energy/command.sh Finished swm_dna_bridge in 111 seconds [~ 164 test (20.17220172201722%) started, 649 in queue, 32 running] Running Test glycopeptidedocking_diglyco_long ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycopeptidedocking_diglyco_long/command.sh Finished voids_penalty_energy_design in 115 seconds [~ 165 test (20.29520295202952%) started, 648 in queue, 32 running] Running Test glycopeptidedocking ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycopeptidedocking/command.sh Finished make_mainchain_potential in 23 seconds [~ 166 test (20.41820418204182%) started, 647 in queue, 32 running] Running Test glycomutagenesis ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycomutagenesis/command.sh Finished loop_grower_N_term_symm in 24 seconds [~ 167 test (20.541205412054122%) started, 646 in queue, 32 running] Running Test glycan_sequon_scanner ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycan_sequon_scanner/command.sh Finished mixed_monte_carlo in 33 seconds [~ 168 test (20.66420664206642%) started, 645 in queue, 32 running] Running Test glycan_refinment ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycan_refinment/command.sh Finished mp_domain_assembly in 39 seconds [~ 169 test (20.78720787207872%) started, 644 in queue, 32 running] Running Test glycan_anomers ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycan_anomers/command.sh Finished rnp_ddg_calc_mut in 93 seconds [~ 170 test (20.91020910209102%) started, 643 in queue, 32 running] Running Test genkic_sugars ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_sugars/command.sh Finished hydrate in 29 seconds [~ 171 test (21.03321033210332%) started, 642 in queue, 32 running] Running Test ga_ligand_dock_macrocycle ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ga_ligand_dock_macrocycle/command.sh Finished netcharge_design in 56 seconds [~ 172 test (21.156211562115622%) started, 641 in queue, 32 running] Running Test ga_ligand_dock_amino_acid ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ga_ligand_dock_amino_acid/command.sh Finished mhc_epitope in 37 seconds [~ 173 test (21.27921279212792%) started, 640 in queue, 32 running] Running Test ga_ligand_dock ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ga_ligand_dock/command.sh Finished polyaramid_test_trivial in 68 seconds [~ 174 test (21.40221402214022%) started, 639 in queue, 32 running] Finished iphold in 32 seconds [~ 174 test (21.40221402214022%) started, 639 in queue, 31 running] No correct command.sh file found for features_pdb_mpi. Skipping. Running Test fold_from_loops ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fold_from_loops/command.sh Running Test favor_coupling_tensor ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/favor_coupling_tensor/command.sh Finished ligand_dock_cholesterol in 34 seconds [~ 177 test (21.771217712177123%) started, 636 in queue, 32 running] Running Test fast_relax_scripts ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fast_relax_scripts/command.sh Finished mp_dock_ensemble in 49 seconds [~ 178 test (21.894218942189422%) started, 635 in queue, 32 running] Running Test farnesyl ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/farnesyl/command.sh Finished interaction_graph_summary_metric in 33 seconds [~ 179 test (22.01722017220172%) started, 634 in queue, 32 running] Running Test farfar_mrna ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/farfar_mrna/command.sh Finished rnp_ddg_relax_command_2 in 101 seconds [~ 180 test (22.14022140221402%) started, 633 in queue, 32 running] Running Test explicit_membrane ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/explicit_membrane/command.sh Finished homodimer_fnd_ref2015_memb in 34 seconds [~ 181 test (22.263222632226324%) started, 632 in queue, 32 running] Running Test exclusively_shared_jumps ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/exclusively_shared_jumps/command.sh Finished glycan_sequon_scanner in 18 seconds [~ 182 test (22.386223862238623%) started, 631 in queue, 32 running] No correct command.sh file found for esm_model_perplexity. Skipping. Running Test evolution ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/evolution/command.sh Finished glycan_refinment in 18 seconds [~ 184 test (22.63222632226322%) started, 629 in queue, 32 running] Running Test enzscore_filter_metal_sym ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enzscore_filter_metal_sym/command.sh Finished rna_denovo_dna_bridge in 97 seconds [~ 185 test (22.755227552275525%) started, 628 in queue, 32 running] Running Test enzscore_filter_metal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enzscore_filter_metal/command.sh Finished hbnet_energy_symm in 36 seconds [~ 186 test (22.878228782287824%) started, 627 in queue, 32 running] Running Test enzscore_filter_ligand ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enzscore_filter_ligand/command.sh Finished glycan_anomers in 21 seconds [~ 187 test (23.001230012300123%) started, 626 in queue, 32 running] Running Test enzscore_filter_dimetal_sym ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enzscore_filter_dimetal_sym/command.sh Finished mp_domain_assembly_FtsQ in 64 seconds [~ 188 test (23.124231242312423%) started, 625 in queue, 32 running] Running Test enzscore_filter_dimetal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enzscore_filter_dimetal/command.sh Finished exclusively_shared_jumps in 16 seconds [~ 189 test (23.247232472324722%) started, 624 in queue, 32 running] Running Test enumerative_sampling ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enumerative_sampling/command.sh Finished favor_coupling_tensor in 25 seconds [~ 190 test (23.370233702337025%) started, 623 in queue, 32 running] Running Test energy_based_clustering_alpha_aa_scorefile ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/energy_based_clustering_alpha_aa_scorefile/command.sh Finished enzscore_filter_metal_sym in 18 seconds [~ 191 test (23.493234932349324%) started, 622 in queue, 32 running] Running Test energy_based_clustering_alpha_aa_dihedral ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/energy_based_clustering_alpha_aa_dihedral/command.sh Finished enzscore_filter_ligand in 15 seconds [~ 192 test (23.616236162361623%) started, 621 in queue, 32 running] Running Test energy_based_clustering_alpha_aa_bin_analysis ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/energy_based_clustering_alpha_aa_bin_analysis/command.sh Finished genkic_sugars in 32 seconds [~ 193 test (23.739237392373923%) started, 620 in queue, 32 running] Running Test energy_based_clustering_alpha_aa ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/energy_based_clustering_alpha_aa/command.sh Finished fold_from_loops in 28 seconds [~ 194 test (23.862238622386222%) started, 619 in queue, 32 running] Running Test duplicate_header_guards ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/duplicate_header_guards/command.sh Finished enzscore_filter_metal in 17 seconds [~ 195 test (23.985239852398525%) started, 618 in queue, 32 running] Running Test drrafter_setup_simple ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup_simple/command.sh Finished drrafter_setup_simple in 0 seconds [~ 196 test (24.108241082410824%) started, 617 in queue, 32 running] Running Test drrafter_setup_ribosome_test ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup_ribosome_test/command.sh Finished rna_denovo_lariat in 118 seconds [~ 197 test (24.231242312423124%) started, 616 in queue, 32 running] Running Test drrafter_setup_real_test_H_no_init ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup_real_test_H_no_init/command.sh Finished enzscore_filter_dimetal_sym in 19 seconds [~ 198 test (24.354243542435423%) started, 615 in queue, 32 running] Running Test drrafter_setup_real_test_H ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup_real_test_H/command.sh Finished enzscore_filter_dimetal in 17 seconds [~ 199 test (24.477244772447726%) started, 614 in queue, 32 running] Running Test drrafter_setup_protein_dock ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup_protein_dock/command.sh Finished drrafter_setup_ribosome_test in 5 seconds [~ 200 test (24.600246002460025%) started, 613 in queue, 32 running] Finished drrafter_setup_protein_dock in 0 seconds [~ 200 test (24.600246002460025%) started, 613 in queue, 31 running] Running Test drrafter_setup_build_missing ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup_build_missing/command.sh Running Test drrafter_setup ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_setup/command.sh Finished energy_based_clustering_alpha_aa_dihedral in 7 seconds [~ 202 test (24.846248462484624%) started, 611 in queue, 32 running] Running Test drrafter_run ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_run/command.sh Finished energy_based_clustering_alpha_aa_bin_analysis in 7 seconds [~ 203 test (24.969249692496923%) started, 610 in queue, 32 running] Running Test drrafter_error_estimation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/drrafter_error_estimation/command.sh Finished farfar_mrna in 33 seconds [~ 204 test (25.092250922509226%) started, 609 in queue, 32 running] Finished drrafter_setup_build_missing in 0 seconds [~ 204 test (25.092250922509226%) started, 609 in queue, 31 running] Finished drrafter_setup in 0 seconds [~ 204 test (25.092250922509226%) started, 609 in queue, 30 running] Running Test dihedral_constraint_generator ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dihedral_constraint_generator/command.sh Running Test dgdp_script ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dgdp_script/command.sh Running Test dgdp_aio ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dgdp_aio/command.sh Finished energy_based_clustering_alpha_aa in 7 seconds [~ 207 test (25.461254612546124%) started, 606 in queue, 32 running] Running Test design_w_custom_palette-RNA ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/design_w_custom_palette-RNA/command.sh Finished energy_based_clustering_alpha_aa_scorefile in 10 seconds [~ 208 test (25.584255842558427%) started, 605 in queue, 32 running] Finished duplicate_header_guards in 7 seconds [~ 208 test (25.584255842558427%) started, 605 in queue, 31 running] Running Test design_w_custom_palette-NCAAs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/design_w_custom_palette-NCAAs/command.sh Running Test design_w_custom_palette-CAAs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/design_w_custom_palette-CAAs/command.sh Finished molfile_to_params_polymer in 83 seconds [~ 210 test (25.830258302583026%) started, 603 in queue, 32 running] Running Test design_glycans ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/design_glycans/command.sh Finished drrafter_setup_real_test_H_no_init in 5 seconds [~ 211 test (25.953259532595325%) started, 602 in queue, 32 running] Running Test dehydro_aa_patch ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dehydro_aa_patch/command.sh Finished drrafter_setup_real_test_H in 5 seconds [~ 212 test (26.076260762607625%) started, 601 in queue, 32 running] Running Test ddG_sym ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ddG_sym/command.sh Finished drrafter_error_estimation in 3 seconds [~ 213 test (26.199261992619927%) started, 600 in queue, 32 running] Running Test database_md5 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/database_md5/command.sh Finished explicit_membrane in 39 seconds [~ 214 test (26.322263222632227%) started, 599 in queue, 32 running] Running Test cycpep_rigid_body_permutation_mover ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cycpep_rigid_body_permutation_mover/command.sh Finished ga_ligand_dock_amino_acid in 43 seconds [~ 215 test (26.445264452644526%) started, 598 in queue, 32 running] Running Test cycpep_rdkit_metric ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cycpep_rdkit_metric/command.sh Finished evolution in 36 seconds [~ 216 test (26.568265682656826%) started, 597 in queue, 32 running] Running Test cycpep_design_pipeline ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cycpep_design_pipeline/command.sh Finished enumerative_sampling in 22 seconds [~ 217 test (26.69126691266913%) started, 596 in queue, 32 running] Running Test custom_basetype_packer_palette ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/custom_basetype_packer_palette/command.sh Finished helical_bundle_predict_sequence in 71 seconds [~ 218 test (26.814268142681428%) started, 595 in queue, 32 running] Running Test crosslinkermover_trigonal_pyramidal_c3_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_trigonal_pyramidal_c3_symm/command.sh Finished helical_bundle_predict_skipping_residues in 75 seconds [~ 219 test (26.937269372693727%) started, 594 in queue, 32 running] Running Test crosslinkermover_trigonal_pyramidal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_trigonal_pyramidal/command.sh Finished farnesyl in 47 seconds [~ 220 test (27.060270602706026%) started, 593 in queue, 32 running] Running Test crosslinkermover_trigonal_planar_c3_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_trigonal_planar_c3_symm/command.sh Finished design_w_custom_palette-RNA in 15 seconds [~ 221 test (27.183271832718326%) started, 592 in queue, 32 running] Running Test crosslinkermover_trigonal_planar ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_trigonal_planar/command.sh Finished dihedral_constraint_generator in 15 seconds [~ 222 test (27.30627306273063%) started, 591 in queue, 32 running] Running Test crosslinkermover_tma_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_tma_symm/command.sh Finished helical_bundle_predict in 75 seconds [~ 223 test (27.429274292742928%) started, 590 in queue, 32 running] Running Test crosslinkermover_tma ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_tma/command.sh Finished dehydro_aa_patch in 14 seconds [~ 224 test (27.552275522755227%) started, 589 in queue, 32 running] Finished glycomutagenesis in 64 seconds [~ 225 test (27.675276752767527%) started, 588 in queue, 32 running] Running Test crosslinkermover_thioether ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_thioether/command.sh Running Test crosslinkermover_tetrahedral_metal_d2_symmetry ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal_d2_symmetry/command.sh Finished hydrate_relax in 83 seconds [~ 226 test (27.798277982779826%) started, 587 in queue, 32 running] Running Test crosslinkermover_tetrahedral_metal_c2_symmetry ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal_c2_symmetry/command.sh Finished hbnet_energy_rosettascripts_linear in 74 seconds [~ 227 test (27.92127921279213%) started, 586 in queue, 32 running] Running Test crosslinkermover_tetrahedral_metal_asp ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal_asp/command.sh Finished design_w_custom_palette-CAAs in 23 seconds [~ 228 test (28.04428044280443%) started, 585 in queue, 32 running] Running Test crosslinkermover_tetrahedral_metal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal/command.sh Finished design_w_custom_palette-NCAAs in 24 seconds [~ 229 test (28.167281672816728%) started, 584 in queue, 32 running] Finished custom_basetype_packer_palette in 17 seconds [~ 229 test (28.167281672816728%) started, 584 in queue, 31 running] Running Test crosslinkermover_square_pyramidal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_square_pyramidal/command.sh Running Test crosslinkermover_square_planar_d2_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_square_planar_d2_symm/command.sh Finished helical_bundle_predict_psipred in 88 seconds [~ 231 test (28.41328413284133%) started, 582 in queue, 32 running] Running Test crosslinkermover_square_planar ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_square_planar/command.sh Finished helical_bundle_predict_psipred_with_helix_globals in 90 seconds [~ 232 test (28.53628536285363%) started, 581 in queue, 32 running] Running Test crosslinkermover_octahedral_s2_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_octahedral_s2_symm/command.sh Finished hbnet_energy in 83 seconds [~ 233 test (28.65928659286593%) started, 580 in queue, 32 running] Running Test crosslinkermover_octahedral ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_octahedral/command.sh Finished crosslinkermover_trigonal_pyramidal_c3_symm in 22 seconds [~ 234 test (28.782287822878228%) started, 579 in queue, 32 running] Running Test crosslinkermover_methyllanthionine ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_methyllanthionine/command.sh Finished crosslinkermover_thioether in 17 seconds [~ 235 test (28.905289052890527%) started, 578 in queue, 32 running] Running Test crosslinkermover_lanthionine ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_lanthionine/command.sh Finished crosslinkermover_trigonal_pyramidal in 25 seconds [~ 236 test (29.02829028290283%) started, 577 in queue, 32 running] Running Test crosslinkermover_1_4_bbmb_s2_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_1_4_bbmb_s2_symm/command.sh Finished crosslinkermover_trigonal_planar_c3_symm in 22 seconds [~ 237 test (29.15129151291513%) started, 576 in queue, 32 running] Running Test crosslinkermover_1_4_bbmb_c2_symmetry ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_1_4_bbmb_c2_symmetry/command.sh Finished job_definition_script_vars in 105 seconds [~ 238 test (29.27429274292743%) started, 575 in queue, 32 running] Finished crosslinkermover_tetrahedral_metal_asp in 17 seconds [~ 238 test (29.27429274292743%) started, 575 in queue, 31 running] Running Test crosslinkermover_1_4_bbmb_asymm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crosslinkermover_1_4_bbmb_asymm/command.sh Running Test create_sequence_motif ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/create_sequence_motif/command.sh Finished crosslinkermover_trigonal_planar in 24 seconds [~ 240 test (29.52029520295203%) started, 573 in queue, 32 running] Running Test create_clash-based_repack_shell ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/create_clash-based_repack_shell/command.sh Finished glycopeptidedocking in 89 seconds [~ 241 test (29.64329643296433%) started, 572 in queue, 32 running] Running Test crankshaft_flip ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crankshaft_flip/command.sh Finished crosslinkermover_tetrahedral_metal in 16 seconds [~ 242 test (29.76629766297663%) started, 571 in queue, 32 running] Running Test count_cycpep_sequences ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/count_cycpep_sequences/command.sh Finished cycpep_rdkit_metric in 36 seconds [~ 243 test (29.88929889298893%) started, 570 in queue, 32 running] Running Test control_flow_rs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/control_flow_rs/command.sh Finished cycpep_design_pipeline in 36 seconds [~ 244 test (30.01230012300123%) started, 569 in queue, 32 running] Running Test constraints_metric ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/constraints_metric/command.sh Finished crosslinkermover_lanthionine in 18 seconds [~ 245 test (30.13530135301353%) started, 568 in queue, 32 running] Running Test coenzymes ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/coenzymes/command.sh Finished crosslinkermover_methyllanthionine in 21 seconds [~ 246 test (30.25830258302583%) started, 567 in queue, 32 running] Running Test code_template_tests_citations ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/code_template_tests_citations/command.sh Finished cycpep_rigid_body_permutation_mover in 46 seconds [~ 247 test (30.38130381303813%) started, 566 in queue, 32 running] Running Test coarse_rna_scoring ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/coarse_rna_scoring/command.sh Finished create_sequence_motif in 17 seconds [~ 248 test (30.50430504305043%) started, 565 in queue, 32 running] Running Test cmaes_minimizer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cmaes_minimizer/command.sh Finished create_clash-based_repack_shell in 14 seconds [~ 249 test (30.627306273062732%) started, 564 in queue, 32 running] Running Test cleanAlignment ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cleanAlignment/command.sh database/citations/rosetta_citations.txt -> database/citations/rosetta_citations.original.txt First script ran successfully. Second script ran successfully. Output matches expectation. Finished code_template_tests_citations in 5 seconds [~ 250 test (30.75030750307503%) started, 563 in queue, 32 running] Running Test cl_complex_rescore ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cl_complex_rescore/command.sh Finished coenzymes in 7 seconds [~ 251 test (30.87330873308733%) started, 562 in queue, 32 running] Running Test ccd_ends_graft_mover_rs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ccd_ends_graft_mover_rs/command.sh Finished simple_cycpep_predict_square_pyramidal_metal in 213 seconds [~ 252 test (30.99630996309963%) started, 561 in queue, 32 running] Running Test case_sensitive_filenames ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/case_sensitive_filenames/command.sh Finished cmaes_minimizer in 8 seconds [~ 253 test (31.11931119311193%) started, 560 in queue, 32 running] Running Test cartesianddg ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cartesianddg/command.sh /usr/bin/git abb8bcc7b6753474405e8a491aa42be38b5a4b35 Finished case_sensitive_filenames in 0 seconds [~ 254 test (31.242312423124233%) started, 559 in queue, 32 running] Running Test cart_min_glycans ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cart_min_glycans/command.sh Finished cl_complex_rescore in 7 seconds [~ 255 test (31.365313653136532%) started, 558 in queue, 32 running] Running Test buried_unsat_voids_hbnet_design_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/buried_unsat_voids_hbnet_design_symm/command.sh Finished cartesianddg in 8 seconds [~ 256 test (31.48831488314883%) started, 557 in queue, 32 running] Running Test buried_unsat_voids_hbnet_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/buried_unsat_voids_hbnet_design/command.sh Finished coarse_rna_scoring in 18 seconds [~ 257 test (31.61131611316113%) started, 556 in queue, 32 running] Running Test burial_measure_centroid ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/burial_measure_centroid/command.sh Finished ga_ligand_dock_macrocycle in 109 seconds [~ 258 test (31.73431734317343%) started, 555 in queue, 32 running] No correct command.sh file found for bcl_fragment_mutate. Skipping. No correct command.sh file found for basic_gcn_tensorflow_test. Skipping. Running Test blob_finder ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/blob_finder/command.sh Finished burial_measure_centroid in 2 seconds [~ 261 test (32.103321033210335%) started, 552 in queue, 32 running] Running Test balancedKIC ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/balancedKIC/command.sh Finished crosslinkermover_1_4_bbmb_c2_symmetry in 38 seconds [~ 262 test (32.226322263222634%) started, 551 in queue, 32 running] Running Test autosetup_metals_centroid ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/autosetup_metals_centroid/command.sh Finished design_glycans in 73 seconds [~ 263 test (32.349323493234934%) started, 550 in queue, 32 running] Running Test auto-drrafter_setup_run_R3 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/auto-drrafter_setup_run_R3/command.sh Finished crosslinkermover_octahedral_s2_symm in 47 seconds [~ 264 test (32.47232472324723%) started, 549 in queue, 32 running] Finished constraints_metric in 32 seconds [~ 264 test (32.47232472324723%) started, 549 in queue, 31 running] Running Test auto-drrafter_setup_run_R2 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/auto-drrafter_setup_run_R2/command.sh Running Test auto-drrafter_setup_run_R1 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/auto-drrafter_setup_run_R1/command.sh Finished crosslinkermover_tetrahedral_metal_c2_symmetry in 62 seconds [~ 266 test (32.71832718327183%) started, 547 in queue, 32 running] Running Test auto-drrafter_final_results ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/auto-drrafter_final_results/command.sh Finished blob_finder in 10 seconds [~ 267 test (32.84132841328413%) started, 546 in queue, 32 running] Running Test antibody_designer_xml ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_designer_xml/command.sh Finished crosslinkermover_square_planar_d2_symm in 58 seconds [~ 268 test (32.96432964329643%) started, 545 in queue, 32 running] No correct command.sh file found for antibody_cc. Skipping. Running Test antibody_designer_camelid ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_designer_camelid/command.sh Finished cleanAlignment in 30 seconds [~ 270 test (33.210332103321036%) started, 543 in queue, 32 running] No correct command.sh file found for abinitio_with_trRosetta. Skipping. Running Test ambiguous_nmr_distance_constraint ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ambiguous_nmr_distance_constraint/command.sh Finished crankshaft_flip in 46 seconds [~ 272 test (33.456334563345635%) started, 541 in queue, 32 running] Running Test SSElementSelector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/SSElementSelector/command.sh Finished cart_min_glycans in 25 seconds [~ 273 test (33.579335793357934%) started, 540 in queue, 32 running] Running Test SID_rescore ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/SID_rescore/command.sh Finished crosslinkermover_tma_symm in 73 seconds [~ 274 test (33.702337023370234%) started, 539 in queue, 32 running] Finished autosetup_metals_centroid in 16 seconds [~ 274 test (33.702337023370234%) started, 539 in queue, 31 running] Running Test SID_ERMS_prediction ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/SID_ERMS_prediction/command.sh Running Test RunSimpleMetric_b_factor_test ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/RunSimpleMetric_b_factor_test/command.sh Finished SID_rescore in 8 seconds [~ 276 test (33.94833948339483%) started, 537 in queue, 32 running] Running Test ResidueDisorder ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ResidueDisorder/command.sh Finished crosslinkermover_tetrahedral_metal_d2_symmetry in 82 seconds [~ 277 test (34.07134071340713%) started, 536 in queue, 32 running] No correct command.sh file found for PTMPrediction. Skipping. Running Test PolarDesign2019 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/PolarDesign2019/command.sh Finished ambiguous_nmr_distance_constraint in 15 seconds [~ 279 test (34.31734317343174%) started, 534 in queue, 32 running] Running Test N-terminal_acetylation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/N-terminal_acetylation/command.sh Finished SSElementSelector in 15 seconds [~ 280 test (34.44034440344404%) started, 533 in queue, 32 running] Running Test InterfaceAnalyzer_metrics ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_metrics/command.sh Finished ResidueDisorder in 5 seconds [~ 281 test (34.563345633456336%) started, 532 in queue, 32 running] Running Test InterfaceAnalyzer_ligand ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_ligand/command.sh Finished N-terminal_acetylation in 3 seconds [~ 282 test (34.686346863468636%) started, 531 in queue, 32 running] Running Test HDXEnergy ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/HDXEnergy/command.sh Finished balancedKIC in 30 seconds [~ 283 test (34.809348093480935%) started, 530 in queue, 32 running] Running Test FavorSequenceProfileMover ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/FavorSequenceProfileMover/command.sh Finished crosslinkermover_square_planar in 77 seconds [~ 284 test (34.932349323493234%) started, 529 in queue, 32 running] Finished crosslinkermover_1_4_bbmb_asymm in 67 seconds [~ 284 test (34.932349323493234%) started, 529 in queue, 31 running] Running Test DumpTrajectoryEnergy_packing ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DumpTrajectoryEnergy_packing/command.sh Running Test DumpTrajectoryEnergy ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DumpTrajectoryEnergy/command.sh Finished auto-drrafter_final_results in 26 seconds [~ 286 test (35.17835178351783%) started, 527 in queue, 32 running] Running Test DNA_methylation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DNA_methylation/command.sh Finished antibody_designer_camelid in 22 seconds [~ 287 test (35.30135301353013%) started, 526 in queue, 32 running] Running Test ContactMolecularSurface ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ContactMolecularSurface/command.sh Finished glycopeptidedocking_diglyco_long in 160 seconds [~ 288 test (35.42435424354244%) started, 525 in queue, 32 running] Running Test CCS_PARCS ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/CCS_PARCS/command.sh Finished ga_ligand_dock in 142 seconds [~ 289 test (35.54735547355474%) started, 524 in queue, 32 running] Running Test BFactorSelector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/BFactorSelector/command.sh Finished crosslinkermover_square_pyramidal in 82 seconds [~ 290 test (35.67035670356704%) started, 523 in queue, 32 running] Running Test AlignPDBInfoToSequences ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/AlignPDBInfoToSequences/command.sh Finished DNA_methylation in 4 seconds [~ 291 test (35.79335793357934%) started, 522 in queue, 32 running] Running Test mm_params ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mm_params/command.sh Finished CCS_PARCS in 3 seconds [~ 292 test (35.916359163591636%) started, 521 in queue, 32 running] Running Test add_helix_sequence_constraints ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/add_helix_sequence_constraints/command.sh Finished InterfaceAnalyzer_ligand in 8 seconds [~ 293 test (36.039360393603936%) started, 520 in queue, 32 running] Running Test autoNOE_rosetta ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/autoNOE_rosetta/command.sh Finished buried_unsat_voids_hbnet_design in 41 seconds [~ 294 test (36.162361623616235%) started, 519 in queue, 32 running] Running Test bundlegridsampler_composition_energy ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_composition_energy/command.sh Finished RunSimpleMetric_b_factor_test in 25 seconds [~ 295 test (36.285362853628534%) started, 518 in queue, 32 running] Running Test ligand_dock_ensemble ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_dock_ensemble/command.sh Finished crosslinkermover_1_4_bbmb_s2_symm in 82 seconds [~ 296 test (36.40836408364083%) started, 517 in queue, 32 running] Running Test add_helix_sequence_constraints_advanced_setup ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/add_helix_sequence_constraints_advanced_setup/command.sh Finished FavorSequenceProfileMover in 16 seconds [~ 297 test (36.53136531365314%) started, 516 in queue, 32 running] Running Test antibody_designer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_designer/command.sh Finished DumpTrajectoryEnergy in 15 seconds [~ 298 test (36.65436654366544%) started, 515 in queue, 32 running] Running Test glycan_tree_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycan_tree_relax/command.sh Finished drrafter_run in 120 seconds [~ 299 test (36.77736777367774%) started, 514 in queue, 32 running] Running Test mp_relax_w_ligand ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_relax_w_ligand/command.sh Finished control_flow_rs in 77 seconds [~ 300 test (36.90036900369004%) started, 513 in queue, 32 running] Running Test ppi_v3_suiteC ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteC/command.sh Finished DumpTrajectoryEnergy_packing in 16 seconds [~ 301 test (37.02337023370234%) started, 512 in queue, 32 running] Running Test swa_rna_erraser ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_erraser/command.sh Finished InterfaceAnalyzer_metrics in 21 seconds [~ 302 test (37.14637146371464%) started, 511 in queue, 32 running] Running Test swm_rna_srl_triplet ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_srl_triplet/command.sh Finished ContactMolecularSurface in 16 seconds [~ 303 test (37.269372693726936%) started, 510 in queue, 32 running] Running Test remodel ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/remodel/command.sh Finished BFactorSelector in 16 seconds [~ 304 test (37.392373923739235%) started, 509 in queue, 32 running] Running Test dna_interface_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dna_interface_design/command.sh Finished SID_ERMS_prediction in 38 seconds [~ 305 test (37.515375153751535%) started, 508 in queue, 32 running] Running Test ppi_v3_suiteF ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteF/command.sh Finished HDXEnergy in 27 seconds [~ 306 test (37.638376383763834%) started, 507 in queue, 32 running] Running Test validate_database ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/validate_database/command.sh Finished mm_params in 22 seconds [~ 307 test (37.76137761377614%) started, 506 in queue, 32 running] Running Test ddG_of_mutation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ddG_of_mutation/command.sh Finished count_cycpep_sequences in 97 seconds [~ 308 test (37.88437884378844%) started, 505 in queue, 32 running] Running Test swa_protein_loop_sampler ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_loop_sampler/command.sh Finished crosslinkermover_tma in 123 seconds [~ 309 test (38.00738007380074%) started, 504 in queue, 32 running] Running Test composition_energy_layers ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/composition_energy_layers/command.sh Finished ddG_sym in 139 seconds [~ 310 test (38.13038130381304%) started, 503 in queue, 32 running] Running Test pertmin ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pertmin/command.sh sed: 1: "/Volumes/scratch/b3.w/r ...": bad flag in substitute command: 'o' Finished database_md5 in 142 seconds [~ 311 test (38.25338253382534%) started, 502 in queue, 32 running] Running Test bundlegridsampler_composition_energy_fract_range ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_composition_energy_fract_range/command.sh Finished fast_relax_scripts in 183 seconds [~ 312 test (38.37638376383764%) started, 501 in queue, 32 running] Running Test fiber_diffraction ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fiber_diffraction/command.sh Finished AlignPDBInfoToSequences in 46 seconds [~ 313 test (38.49938499384994%) started, 500 in queue, 32 running] Running Test simple_cycpep_predict ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict/command.sh Finished antibody_designer_xml in 86 seconds [~ 314 test (38.622386223862236%) started, 499 in queue, 32 running] Running Test swa_protein_combine_loops ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_combine_loops/command.sh Finished crosslinkermover_octahedral in 143 seconds [~ 315 test (38.745387453874535%) started, 498 in queue, 32 running] Running Test bundlegridsampler_copy_pitch ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_copy_pitch/command.sh Finished auto-drrafter_setup_run_R3 in 99 seconds [~ 316 test (38.86838868388684%) started, 497 in queue, 32 running] Running Test hotspot_hashing ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hotspot_hashing/command.sh Finished swa_rna_erraser in 54 seconds [~ 317 test (38.99138991389914%) started, 496 in queue, 32 running] Running Test coupled_moves ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/coupled_moves/command.sh Finished autoNOE_rosetta in 65 seconds [~ 318 test (39.11439114391144%) started, 495 in queue, 32 running] Running Test app_exception_handling ulimit -t 960 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/app_exception_handling/command.sh Finished PolarDesign2019 in 78 seconds [~ 319 test (39.23739237392374%) started, 494 in queue, 32 running] Running Test rna_denovo_base_pair_constraints ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_base_pair_constraints/command.sh Finished buried_unsat_voids_hbnet_design_symm in 126 seconds [~ 320 test (39.36039360393604%) started, 493 in queue, 32 running] Running Test motif_dna_packer_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/motif_dna_packer_design/command.sh Finished swa_protein_loop_sampler in 56 seconds [~ 321 test (39.48339483394834%) started, 492 in queue, 32 running] Running Test simple_cycpep_predict_anglelength ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_anglelength/command.sh Finished auto-drrafter_setup_run_R1 in 126 seconds [~ 322 test (39.60639606396064%) started, 491 in queue, 32 running] Running Test nonideal_rtmin ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/nonideal_rtmin/command.sh Finished pertmin in 62 seconds [~ 323 test (39.72939729397294%) started, 490 in queue, 32 running] Running Test mirror_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mirror_symm/command.sh Finished dna_interface_design in 84 seconds [~ 324 test (39.85239852398524%) started, 489 in queue, 32 running] Running Test remodel_disulfides ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/remodel_disulfides/command.sh Finished swa_protein_combine_loops in 40 seconds [~ 325 test (39.97539975399754%) started, 488 in queue, 32 running] Running Test membrane_relax_hbond ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/membrane_relax_hbond/command.sh Finished dgdp_aio in 212 seconds [~ 326 test (40.09840098400984%) started, 487 in queue, 32 running] Running Test membrane_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/membrane_relax/command.sh Finished ccd_ends_graft_mover_rs in 153 seconds [~ 327 test (40.22140221402214%) started, 486 in queue, 32 running] Running Test simple_cycpep_predict_angle ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_angle/command.sh Finished antibody_designer in 93 seconds [~ 328 test (40.34440344403444%) started, 485 in queue, 32 running] Running Test simple_cycpep_predict_cartesian ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_cartesian/command.sh Finished simple_cycpep_predict in 62 seconds [~ 329 test (40.46740467404674%) started, 484 in queue, 32 running] Running Test fiber_diffraction_fad ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fiber_diffraction_fad/command.sh Finished fiber_diffraction in 73 seconds [~ 330 test (40.59040590405904%) started, 483 in queue, 32 running] Running Test rna_puzzle12_P5P6P7_DMS ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_puzzle12_P5P6P7_DMS/command.sh Finished bundlegridsampler_composition_energy_fract_range in 77 seconds [~ 331 test (40.71340713407134%) started, 482 in queue, 32 running] Running Test ddG_ensemble ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ddG_ensemble/command.sh Finished ppi_v3_suiteF in 100 seconds [~ 332 test (40.83640836408364%) started, 481 in queue, 32 running] Running Test SnugDock ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/SnugDock/command.sh Finished composition_energy_layers in 92 seconds [~ 333 test (40.95940959409594%) started, 480 in queue, 32 running] Running Test rs_loophash ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rs_loophash/command.sh Finished swm_rna_srl_triplet in 112 seconds [~ 334 test (41.082410824108244%) started, 479 in queue, 32 running] Running Test hbnet_asymm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbnet_asymm/command.sh Finished motif_dna_packer_design in 49 seconds [~ 335 test (41.20541205412054%) started, 478 in queue, 32 running] Running Test swa_protein_CCDclose ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_CCDclose/command.sh Finished validate_database in 110 seconds [~ 336 test (41.32841328413284%) started, 477 in queue, 32 running] Running Test stepwise_lores ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/stepwise_lores/command.sh Finished ppi_v3_suiteC in 121 seconds [~ 337 test (41.45141451414514%) started, 476 in queue, 32 running] Running Test rosetta_scripts_loops ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosetta_scripts_loops/command.sh Finished add_helix_sequence_constraints_advanced_setup in 126 seconds [~ 338 test (41.57441574415744%) started, 475 in queue, 32 running] Running Test flexpepdock ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/flexpepdock/command.sh Finished hotspot_hashing in 74 seconds [~ 339 test (41.69741697416974%) started, 474 in queue, 32 running] Running Test simple_glycosylation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_glycosylation/command.sh Finished rna_denovo_base_pair_constraints in 71 seconds [~ 340 test (41.82041820418204%) started, 473 in queue, 32 running] Running Test inverse_rotamer_remodel ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/inverse_rotamer_remodel/command.sh Finished remodel_disulfides in 40 seconds [~ 341 test (41.94341943419434%) started, 472 in queue, 32 running] Running Test simple_cycpep_predict_tbmb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_tbmb/command.sh Finished stepwise_lores in 10 seconds [~ 342 test (42.06642066420664%) started, 471 in queue, 32 running] Running Test simple_cycpep_predict_setting ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_setting/command.sh Finished simple_cycpep_predict_anglelength in 57 seconds [~ 343 test (42.189421894218945%) started, 470 in queue, 32 running] Running Test glycan_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycan_relax/command.sh Finished mp_relax_w_ligand in 135 seconds [~ 344 test (42.312423124231245%) started, 469 in queue, 32 running] Running Test swa_rna_gagu_09_sample_virtual_ribose ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_09_sample_virtual_ribose/command.sh Finished bundlegridsampler_copy_pitch in 83 seconds [~ 345 test (42.435424354243544%) started, 468 in queue, 32 running] Running Test vip ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/vip/command.sh Finished mirror_symm in 54 seconds [~ 346 test (42.55842558425584%) started, 467 in queue, 32 running] Running Test d_workflow ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/d_workflow/command.sh Finished glycan_tree_relax in 141 seconds [~ 347 test (42.68142681426814%) started, 466 in queue, 32 running] Running Test test1_benchmark ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/test1_benchmark/command.sh Finished ligand_dock_ensemble in 150 seconds [~ 348 test (42.80442804428044%) started, 465 in queue, 32 running] Running Test splice_in_4loops_shorter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_in_4loops_shorter/command.sh Finished simple_cycpep_predict_angle in 53 seconds [~ 349 test (42.92742927429274%) started, 464 in queue, 32 running] Running Test match_6cpa ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/match_6cpa/command.sh Finished dgdp_script in 266 seconds [~ 350 test (43.05043050430504%) started, 463 in queue, 32 running] Running Test LoopAnalyzer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/LoopAnalyzer/command.sh Finished add_helix_sequence_constraints in 156 seconds [~ 351 test (43.17343173431734%) started, 462 in queue, 32 running] Finished bundlegridsampler_composition_energy in 154 seconds [~ 351 test (43.17343173431734%) started, 462 in queue, 31 running] Running Test perturb_helical_bundle_copying_pitch ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/perturb_helical_bundle_copying_pitch/command.sh Running Test antibody_H3 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_H3/command.sh Finished rna_puzzle12_P5P6P7_DMS in 47 seconds [~ 353 test (43.419434194341946%) started, 460 in queue, 32 running] Running Test ligand_water_docking ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_water_docking/command.sh Finished simple_cycpep_predict_cartesian in 64 seconds [~ 354 test (43.542435424354245%) started, 459 in queue, 32 running] Running Test cyclization ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cyclization/command.sh Finished membrane_relax_hbond in 68 seconds [~ 355 test (43.665436654366545%) started, 458 in queue, 32 running] Running Test relax_w_allatom_cst ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/relax_w_allatom_cst/command.sh Finished membrane_relax in 67 seconds [~ 356 test (43.788437884378844%) started, 457 in queue, 32 running] Running Test mr_protocols ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mr_protocols/command.sh Finished coupled_moves in 106 seconds [~ 357 test (43.91143911439114%) started, 456 in queue, 32 running] Running Test hbnet ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbnet/command.sh Finished remodel in 164 seconds [~ 358 test (44.03444034440344%) started, 455 in queue, 32 running] Running Test supercharge ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/supercharge/command.sh Finished rs_loophash in 58 seconds [~ 359 test (44.15744157441574%) started, 454 in queue, 32 running] Running Test glycosylation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycosylation/command.sh Finished match_6cpa in 25 seconds [~ 360 test (44.28044280442804%) started, 453 in queue, 32 running] Running Test bridge_chains ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bridge_chains/command.sh Finished simple_cycpep_predict_tbmb in 45 seconds [~ 361 test (44.40344403444035%) started, 452 in queue, 32 running] Running Test hybridization ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hybridization/command.sh Finished fiber_diffraction_fad in 79 seconds [~ 362 test (44.52644526445265%) started, 451 in queue, 32 running] Running Test AnchorFinder ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/AnchorFinder/command.sh Finished splice_in_4loops_shorter in 30 seconds [~ 363 test (44.64944649446495%) started, 450 in queue, 32 running] Running Test rna_puzzle5_p2_GAAA_mini ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_puzzle5_p2_GAAA_mini/command.sh Finished glycosylation in 8 seconds [~ 364 test (44.772447724477246%) started, 449 in queue, 32 running] Running Test rna_denovo ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo/command.sh Finished auto-drrafter_setup_run_R2 in 225 seconds [~ 365 test (44.895448954489545%) started, 448 in queue, 32 running] Running Test jd2test_mmCIFin_PDBout ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jd2test_mmCIFin_PDBout/command.sh Finished simple_cycpep_predict_setting in 51 seconds [~ 366 test (45.018450184501845%) started, 447 in queue, 32 running] Running Test jd2test_mmCIFIO ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jd2test_mmCIFIO/command.sh Finished rna_puzzle5_p2_GAAA_mini in 8 seconds [~ 367 test (45.141451414514144%) started, 446 in queue, 32 running] Running Test hts_io ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hts_io/command.sh Finished rna_denovo in 13 seconds [~ 368 test (45.26445264452644%) started, 445 in queue, 32 running] Running Test secondary_structure_output ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/secondary_structure_output/command.sh Finished SnugDock in 84 seconds [~ 369 test (45.38745387453874%) started, 444 in queue, 32 running] Running Test rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation/command.sh Finished hbnet_asymm in 81 seconds [~ 370 test (45.51045510455105%) started, 443 in queue, 32 running] Running Test mp_symdock ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_symdock/command.sh Finished perturb_helical_bundle_copying_pitch in 50 seconds [~ 371 test (45.63345633456335%) started, 442 in queue, 32 running] Running Test swa_protein_prepack ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_prepack/command.sh Finished AnchorFinder in 22 seconds [~ 372 test (45.75645756457565%) started, 441 in queue, 32 running] Running Test range_relax_w_cst ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/range_relax_w_cst/command.sh Finished ddG_of_mutation in 185 seconds [~ 373 test (45.87945879458795%) started, 440 in queue, 32 running] Running Test generate_6Dloopclose ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/generate_6Dloopclose/command.sh Finished inverse_rotamer_remodel in 71 seconds [~ 374 test (46.002460024600246%) started, 439 in queue, 32 running] Running Test splice_in_4loops_longer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_in_4loops_longer/command.sh Finished simple_glycosylation in 73 seconds [~ 375 test (46.125461254612546%) started, 438 in queue, 32 running] Running Test ligand_dock_script ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_dock_script/command.sh Finished rosetta_scripts_loops in 83 seconds [~ 376 test (46.248462484624845%) started, 437 in queue, 32 running] Running Test ligand_database_io ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_database_io/command.sh Finished ddG_ensemble in 103 seconds [~ 377 test (46.371463714637144%) started, 436 in queue, 32 running] Running Test remodel_disulfides_rosettascripts ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/remodel_disulfides_rosettascripts/command.sh Finished d_workflow in 72 seconds [~ 378 test (46.494464944649444%) started, 435 in queue, 32 running] Running Test splice_out_L1_L2_shorter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_L1_L2_shorter/command.sh Finished hbnet in 51 seconds [~ 379 test (46.61746617466174%) started, 434 in queue, 32 running] Running Test ppi_v3_suiteB ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteB/command.sh Finished vip in 78 seconds [~ 380 test (46.74046740467405%) started, 433 in queue, 32 running] Running Test swm_build_full_model ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_build_full_model/command.sh Finished swa_rna_gagu_09_sample_virtual_ribose in 79 seconds [~ 381 test (46.86346863468635%) started, 432 in queue, 32 running] Running Test swa_protein_cluster ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_cluster/command.sh Finished ligand_water_docking in 67 seconds [~ 382 test (46.98646986469865%) started, 431 in queue, 32 running] Running Test sdf_reader ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sdf_reader/command.sh Finished LoopAnalyzer in 74 seconds [~ 383 test (47.10947109471095%) started, 430 in queue, 32 running] Running Test splice_out_H1_H2_longer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_H1_H2_longer/command.sh Finished bridge_chains in 50 seconds [~ 384 test (47.23247232472325%) started, 429 in queue, 32 running] Running Test UBQ_E2_thioester_extra_bodies ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/UBQ_E2_thioester_extra_bodies/command.sh Finished swa_protein_CCDclose in 101 seconds [~ 385 test (47.355473554735546%) started, 428 in queue, 32 running] Running Test mp_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_relax/command.sh Finished swa_protein_cluster in 6 seconds [~ 386 test (47.478474784747846%) started, 427 in queue, 32 running] Running Test match_1n9l ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/match_1n9l/command.sh Finished mr_protocols in 63 seconds [~ 387 test (47.601476014760145%) started, 426 in queue, 32 running] Running Test bundlegridsampler_epsilon ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_epsilon/command.sh Finished nonideal_rtmin in 141 seconds [~ 388 test (47.724477244772444%) started, 425 in queue, 32 running] Running Test PDB_diagnostic ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/PDB_diagnostic/command.sh Finished splice_in_4loops_longer in 27 seconds [~ 389 test (47.84747847478475%) started, 424 in queue, 32 running] Running Test symm_disulfidize ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symm_disulfidize/command.sh Finished swm_build_full_model in 13 seconds [~ 390 test (47.97047970479705%) started, 423 in queue, 32 running] Running Test splice_out_H1_H2_shorter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_H1_H2_shorter/command.sh Finished hybridization in 54 seconds [~ 391 test (48.09348093480935%) started, 422 in queue, 32 running] Running Test splice_out_H1_H2_same ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_H1_H2_same/command.sh Finished glycan_relax in 97 seconds [~ 392 test (48.21648216482165%) started, 421 in queue, 32 running] Running Test fast_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fast_relax/command.sh Finished relax_w_allatom_cst in 71 seconds [~ 393 test (48.33948339483395%) started, 420 in queue, 32 running] Running Test enzdes ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/enzdes/command.sh Finished secondary_structure_output in 39 seconds [~ 394 test (48.46248462484625%) started, 419 in queue, 32 running] Running Test batch_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/batch_relax/command.sh Finished splice_out_L1_L2_shorter in 20 seconds [~ 395 test (48.58548585485855%) started, 418 in queue, 32 running] Running Test kinemage_grid_output ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/kinemage_grid_output/command.sh Finished flexpepdock in 109 seconds [~ 396 test (48.708487084870846%) started, 417 in queue, 32 running] Running Test remodel_helical_repeat ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/remodel_helical_repeat/command.sh Finished generate_6Dloopclose in 38 seconds [~ 397 test (48.831488314883146%) started, 416 in queue, 32 running] Running Test threefold_symm_peptide_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/threefold_symm_peptide_design/command.sh Finished test1_benchmark in 95 seconds [~ 398 test (48.95448954489545%) started, 415 in queue, 32 running] Running Test rna_denovo_RNP_low_res ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_RNP_low_res/command.sh Finished PDB_diagnostic in 15 seconds [~ 399 test (49.07749077490775%) started, 414 in queue, 32 running] Running Test KIC_with_fragments ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/KIC_with_fragments/command.sh Finished mp_symdock in 44 seconds [~ 400 test (49.20049200492005%) started, 413 in queue, 32 running] Running Test splice_out_L1_L2_same ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_L1_L2_same/command.sh Finished supercharge in 76 seconds [~ 401 test (49.32349323493235%) started, 412 in queue, 32 running] Finished hts_io in 59 seconds [~ 401 test (49.32349323493235%) started, 412 in queue, 31 running] Running Test hshash_utils ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hshash_utils/command.sh Running Test ppi_v3_suiteE ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteE/command.sh Finished rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation in 52 seconds [~ 403 test (49.56949569495695%) started, 410 in queue, 32 running] Running Test thermal_sampler ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/thermal_sampler/command.sh Finished range_relax_w_cst in 47 seconds [~ 404 test (49.69249692496925%) started, 409 in queue, 32 running] Running Test AlterSpecDisruption ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/AlterSpecDisruption/command.sh Finished match_1n9l in 27 seconds [~ 405 test (49.81549815498155%) started, 408 in queue, 32 running] Running Test ppi_v3_suiteA ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteA/command.sh Finished splice_out_H1_H2_shorter in 22 seconds [~ 406 test (49.93849938499385%) started, 407 in queue, 32 running] Running Test dock_with_hotspot_place_simultaneously ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dock_with_hotspot_place_simultaneously/command.sh Finished ligand_dock_script in 50 seconds [~ 407 test (50.06150061500615%) started, 406 in queue, 32 running] Running Test docking_ensemble ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_ensemble/command.sh Finished splice_out_H1_H2_longer in 31 seconds [~ 408 test (50.18450184501845%) started, 405 in queue, 32 running] Running Test discontinuous_sewing_hasher ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/discontinuous_sewing_hasher/command.sh Finished discontinuous_sewing_hasher in 2 seconds [~ 409 test (50.30750307503075%) started, 404 in queue, 32 running] Running Test swm_rna_move_inside_helix_by_jump ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_move_inside_helix_by_jump/command.sh Finished swa_protein_prepack in 57 seconds [~ 410 test (50.43050430504305%) started, 403 in queue, 32 running] Running Test pmut_scan ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pmut_scan/command.sh Finished ppi_v3_suiteB in 42 seconds [~ 411 test (50.55350553505535%) started, 402 in queue, 32 running] Finished splice_out_H1_H2_same in 27 seconds [~ 411 test (50.55350553505535%) started, 402 in queue, 31 running] Running Test disulfidize_beta_cys ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/disulfidize_beta_cys/command.sh Running Test swm_l_rna ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_l_rna/command.sh Finished hshash_utils in 12 seconds [~ 413 test (50.79950799507995%) started, 400 in queue, 32 running] Running Test rna_puzzle11_H2H3H4_run3_connectU40 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_puzzle11_H2H3H4_run3_connectU40/command.sh Finished kinemage_grid_output in 29 seconds [~ 414 test (50.92250922509225%) started, 399 in queue, 32 running] Running Test mp_find_interface ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_find_interface/command.sh Finished jd2test_mmCIFin_PDBout in 79 seconds [~ 415 test (51.04551045510455%) started, 398 in queue, 32 running] Running Test hotspot_graft ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hotspot_graft/command.sh Finished UBQ_E2_thioester_extra_bodies in 39 seconds [~ 416 test (51.168511685116854%) started, 397 in queue, 32 running] Running Test zinc_heterodimer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/zinc_heterodimer/command.sh Finished remodel_disulfides_rosettascripts in 54 seconds [~ 417 test (51.291512915129154%) started, 396 in queue, 32 running] Running Test rna_denovo_RNP_refine_native ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_RNP_refine_native/command.sh Finished jd2test_mmCIFIO in 78 seconds [~ 418 test (51.41451414514145%) started, 395 in queue, 32 running] Finished sdf_reader in 45 seconds [~ 418 test (51.41451414514145%) started, 395 in queue, 31 running] Running Test docking_local_refine ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_local_refine/command.sh Running Test beta_strand_homodimer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/beta_strand_homodimer/command.sh Finished ligand_database_io in 57 seconds [~ 420 test (51.66051660516605%) started, 393 in queue, 32 running] Running Test simple_cycpep_predict_cispro ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_cispro/command.sh Finished threefold_symm_peptide_design in 26 seconds [~ 421 test (51.78351783517835%) started, 392 in queue, 32 running] Running Test TryDisulfPermutations ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/TryDisulfPermutations/command.sh Finished bundlegridsampler_epsilon in 41 seconds [~ 422 test (51.90651906519065%) started, 391 in queue, 32 running] Finished thermal_sampler in 19 seconds [~ 422 test (51.90651906519065%) started, 391 in queue, 31 running] Running Test genkic_rama_filter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_rama_filter/command.sh Running Test KIC_vicinity ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/KIC_vicinity/command.sh Finished mp_relax in 42 seconds [~ 424 test (52.15252152521525%) started, 389 in queue, 32 running] Running Test task_selector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/task_selector/command.sh Finished splice_out_L1_L2_same in 24 seconds [~ 425 test (52.275522755227556%) started, 388 in queue, 32 running] Running Test swm_beta_peptide_loop ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_beta_peptide_loop/command.sh Finished enzdes in 40 seconds [~ 426 test (52.398523985239855%) started, 387 in queue, 32 running] Running Test docking_site_constraints ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_site_constraints/command.sh Finished rna_denovo_RNP_low_res in 36 seconds [~ 427 test (52.521525215252154%) started, 386 in queue, 32 running] Running Test splice_out_L1_L2_longer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_L1_L2_longer/command.sh Finished symm_disulfidize in 50 seconds [~ 428 test (52.644526445264454%) started, 385 in queue, 32 running] Running Test rotamer_probability ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rotamer_probability/command.sh Finished dock_with_hotspot_place_simultaneously in 27 seconds [~ 429 test (52.76752767527675%) started, 384 in queue, 32 running] Running Test rna_farfar_block_stack ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_farfar_block_stack/command.sh Finished rna_puzzle11_H2H3H4_run3_connectU40 in 21 seconds [~ 430 test (52.89052890528905%) started, 383 in queue, 32 running] Running Test ligand_dock_7cpa ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_dock_7cpa/command.sh Finished remodel_helical_repeat in 47 seconds [~ 431 test (53.01353013530135%) started, 382 in queue, 32 running] Running Test hbs_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbs_design/command.sh Finished ppi_v3_suiteE in 36 seconds [~ 432 test (53.13653136531365%) started, 381 in queue, 32 running] Running Test bundlereporter_filter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlereporter_filter/command.sh Finished genkic_rama_filter in 18 seconds [~ 433 test (53.25953259532595%) started, 380 in queue, 32 running] Running Test AnchoredDesign ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/AnchoredDesign/command.sh Finished batch_relax in 52 seconds [~ 434 test (53.38253382533826%) started, 379 in queue, 32 running] Running Test simple_cycpep_predict_symm_gly ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_symm_gly/command.sh Finished fast_relax in 55 seconds [~ 435 test (53.505535055350556%) started, 378 in queue, 32 running] Running Test ppi_v3_suiteG ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteG/command.sh Finished swm_rna_move_inside_helix_by_jump in 30 seconds [~ 436 test (53.628536285362856%) started, 377 in queue, 32 running] Running Test swm_rna_singleloop ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_singleloop/command.sh Finished ppi_v3_suiteA in 36 seconds [~ 437 test (53.751537515375155%) started, 376 in queue, 32 running] Running Test swa_protein_build_at_Nterminus ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_build_at_Nterminus/command.sh Finished KIC_with_fragments in 48 seconds [~ 438 test (53.874538745387454%) started, 375 in queue, 32 running] Running Test ppi_v3_suiteD ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppi_v3_suiteD/command.sh Finished simple_cycpep_predict_cispro in 26 seconds [~ 439 test (53.997539975399754%) started, 374 in queue, 32 running] Running Test bundlegridsampler ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler/command.sh Finished swm_beta_peptide_loop in 25 seconds [~ 440 test (54.12054120541205%) started, 373 in queue, 32 running] Running Test simple_cycpep_predict_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_design/command.sh Finished KIC_vicinity in 26 seconds [~ 441 test (54.24354243542435%) started, 372 in queue, 32 running] Running Test rs_flexbbmoves ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rs_flexbbmoves/command.sh Finished task_selector in 32 seconds [~ 442 test (54.36654366543665%) started, 371 in queue, 32 running] Running Test swm_protein_loop_sampler ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_protein_loop_sampler/command.sh Finished disulfidize_beta_cys in 43 seconds [~ 443 test (54.48954489544895%) started, 370 in queue, 32 running] Running Test peptiderive ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/peptiderive/command.sh Finished rna_denovo_RNP_refine_native in 37 seconds [~ 444 test (54.61254612546126%) started, 369 in queue, 32 running] Running Test oop_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/oop_design/command.sh Finished splice_out_L1_L2_longer in 27 seconds [~ 445 test (54.73554735547356%) started, 368 in queue, 32 running] Running Test kinematic_looprelax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/kinematic_looprelax/command.sh Finished mp_find_interface in 41 seconds [~ 446 test (54.858548585485856%) started, 367 in queue, 32 running] Running Test dock_glycans ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/dock_glycans/command.sh Finished hotspot_graft in 41 seconds [~ 447 test (54.981549815498155%) started, 366 in queue, 32 running] Running Test bundlegridsampler_design_nstruct_mode ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_design_nstruct_mode/command.sh Finished TryDisulfPermutations in 41 seconds [~ 448 test (55.104551045510455%) started, 365 in queue, 32 running] Running Test backrub_pilot ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/backrub_pilot/command.sh Finished docking_site_constraints in 35 seconds [~ 449 test (55.227552275522754%) started, 364 in queue, 32 running] Running Test Enzrevert_xml ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/Enzrevert_xml/command.sh Finished ligand_dock_7cpa in 28 seconds [~ 450 test (55.35055350553505%) started, 363 in queue, 32 running] Running Test KIC_refine ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/KIC_refine/command.sh Finished zinc_heterodimer in 46 seconds [~ 451 test (55.47355473554735%) started, 362 in queue, 32 running] Running Test next_generation_KIC ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/next_generation_KIC/command.sh Finished swm_l_rna in 52 seconds [~ 452 test (55.59655596555965%) started, 361 in queue, 32 running] Running Test simple_cycpep_predict_symmetric_sampling ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_symmetric_sampling/command.sh Finished docking_local_refine in 47 seconds [~ 453 test (55.71955719557196%) started, 360 in queue, 32 running] Running Test rosie_ligand_docking ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosie_ligand_docking/command.sh Finished rotamer_probability in 33 seconds [~ 454 test (55.84255842558426%) started, 359 in queue, 32 running] Running Test rna_denovo_bps ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_bps/command.sh Finished AlterSpecDisruption in 65 seconds [~ 455 test (55.96555965559656%) started, 358 in queue, 32 running] Finished pmut_scan in 55 seconds [~ 455 test (55.96555965559656%) started, 358 in queue, 31 running] Finished simple_cycpep_predict_symm_gly in 27 seconds [~ 455 test (55.96555965559656%) started, 358 in queue, 30 running] Running Test features ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/features/command.sh Running Test cycpep_symmetry_filter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cycpep_symmetry_filter/command.sh Running Test backrub_interface_ddG ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/backrub_interface_ddG/command.sh Finished rna_farfar_block_stack in 33 seconds [~ 458 test (56.334563345633455%) started, 355 in queue, 32 running] Running Test simple_hbondstoatom ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_hbondstoatom/command.sh Finished simple_cycpep_predict_design in 23 seconds [~ 459 test (56.457564575645755%) started, 354 in queue, 32 running] Running Test inv_kin_lig_loop_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/inv_kin_lig_loop_design/command.sh Finished swm_rna_singleloop in 29 seconds [~ 460 test (56.580565805658054%) started, 353 in queue, 32 running] Running Test hbonds_sp2 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbonds_sp2/command.sh Finished ppi_v3_suiteG in 30 seconds [~ 461 test (56.70356703567035%) started, 352 in queue, 32 running] Running Test hbonds ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbonds/command.sh Finished swa_protein_build_at_Nterminus in 30 seconds [~ 462 test (56.82656826568266%) started, 351 in queue, 32 running] Finished rna_denovo_bps in 6 seconds [~ 462 test (56.82656826568266%) started, 351 in queue, 31 running] Running Test fixbb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fixbb/command.sh Running Test entropy_correction ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/entropy_correction/command.sh Finished AnchoredDesign in 34 seconds [~ 464 test (57.07257072570726%) started, 349 in queue, 32 running] Running Test bundlegridsampler_z1_offset ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_z1_offset/command.sh Finished ppi_v3_suiteD in 30 seconds [~ 465 test (57.19557195571956%) started, 348 in queue, 32 running] Running Test bundlegridsampler_z0_offset ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_z0_offset/command.sh Finished rs_flexbbmoves in 29 seconds [~ 466 test (57.31857318573186%) started, 347 in queue, 32 running] Running Test rotamer_recovery ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rotamer_recovery/command.sh Finished simple_cycpep_predict_symmetric_sampling in 12 seconds [~ 467 test (57.44157441574416%) started, 346 in queue, 32 running] Running Test rna_assemble ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_assemble/command.sh Finished bundlereporter_filter in 41 seconds [~ 468 test (57.564575645756456%) started, 345 in queue, 32 running] Running Test place_simultaneously ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/place_simultaneously/command.sh Finished hbs_design in 41 seconds [~ 469 test (57.687576875768755%) started, 344 in queue, 32 running] Finished swm_protein_loop_sampler in 24 seconds [~ 469 test (57.687576875768755%) started, 344 in queue, 31 running] Running Test doug_dock_design_min_mod2_cal_cal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/doug_dock_design_min_mod2_cal_cal/command.sh Running Test docking_full_protocol ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_full_protocol/command.sh Finished bundlegridsampler in 34 seconds [~ 471 test (57.93357933579336%) started, 342 in queue, 32 running] Running Test UBQ_E2_thioester ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/UBQ_E2_thioester/command.sh Finished beta_strand_homodimer in 61 seconds [~ 472 test (58.05658056580566%) started, 341 in queue, 32 running] Running Test symm_rotamer_boltzmann ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symm_rotamer_boltzmann/command.sh Finished antibody_H3 in 182 seconds [~ 473 test (58.17958179581796%) started, 340 in queue, 32 running] Finished cyclization in 171 seconds [~ 473 test (58.17958179581796%) started, 340 in queue, 31 running] Running Test splice_out_H3_same ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_H3_same/command.sh Running Test membrane_abinitio ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/membrane_abinitio/command.sh Finished bundlegridsampler_design_nstruct_mode in 31 seconds [~ 475 test (58.42558425584256%) started, 338 in queue, 32 running] Running Test docking_distance_constraints ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_distance_constraints/command.sh Finished docking_ensemble in 82 seconds [~ 476 test (58.54858548585486%) started, 337 in queue, 32 running] Finished KIC_refine in 27 seconds [~ 476 test (58.54858548585486%) started, 337 in queue, 31 running] Running Test swm_rna_protonated_adenosine ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_protonated_adenosine/command.sh Running Test splice_out_L3_same ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_L3_same/command.sh Finished Enzrevert_xml in 29 seconds [~ 478 test (58.79458794587946%) started, 335 in queue, 32 running] Finished hbonds_sp2 in 20 seconds [~ 478 test (58.79458794587946%) started, 335 in queue, 31 running] Running Test pepspec ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pepspec/command.sh Running Test loop_modeling ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/loop_modeling/command.sh Finished rotamer_recovery in 15 seconds [~ 480 test (59.04059040590406%) started, 333 in queue, 32 running] Finished rna_assemble in 14 seconds [~ 480 test (59.04059040590406%) started, 333 in queue, 31 running] Running Test ligand_motif_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_motif_design/command.sh Running Test bin_initialization ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bin_initialization/command.sh Finished backrub_interface_ddG in 25 seconds [~ 482 test (59.28659286592866%) started, 331 in queue, 32 running] Running Test torsion_restricted_sampling ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/torsion_restricted_sampling/command.sh Finished oop_design in 37 seconds [~ 483 test (59.40959409594096%) started, 330 in queue, 32 running] Finished backrub_pilot in 32 seconds [~ 483 test (59.40959409594096%) started, 330 in queue, 31 running] Running Test swm_protein_move_inside_helix_by_bond ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_protein_move_inside_helix_by_bond/command.sh Running Test sequence_profile_constraints ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sequence_profile_constraints/command.sh Finished rosie_ligand_docking in 28 seconds [~ 485 test (59.65559655596556%) started, 328 in queue, 32 running] Finished inv_kin_lig_loop_design in 24 seconds [~ 485 test (59.65559655596556%) started, 328 in queue, 31 running] Running Test rosetta_scripts_include ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosetta_scripts_include/command.sh Running Test rna_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_design/command.sh Finished dock_glycans in 35 seconds [~ 487 test (59.90159901599016%) started, 326 in queue, 32 running] Running Test perturb_helical_bundle ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/perturb_helical_bundle/command.sh Finished kinematic_looprelax in 36 seconds [~ 488 test (60.02460024600246%) started, 325 in queue, 32 running] Running Test helical_bundle_nonideal ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle_nonideal/command.sh Finished simple_hbondstoatom in 27 seconds [~ 489 test (60.14760147601476%) started, 324 in queue, 32 running] Running Test swm_rna_nickedhelix ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_nickedhelix/command.sh Finished hbonds in 23 seconds [~ 490 test (60.27060270602706%) started, 323 in queue, 32 running] Running Test mf_fixbb_des ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mf_fixbb_des/command.sh Finished cycpep_symmetry_filter in 30 seconds [~ 491 test (60.39360393603936%) started, 322 in queue, 32 running] Running Test match_xml ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/match_xml/command.sh Finished features in 31 seconds [~ 492 test (60.51660516605166%) started, 321 in queue, 32 running] Running Test genkic_lowmemory_mode ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_lowmemory_mode/command.sh Finished bundlegridsampler_z1_offset in 25 seconds [~ 493 test (60.63960639606396%) started, 320 in queue, 32 running] Running Test flexpepdock_abinitio ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/flexpepdock_abinitio/command.sh Finished bundlegridsampler_z0_offset in 25 seconds [~ 494 test (60.76260762607626%) started, 319 in queue, 32 running] Running Test features_parallel ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/features_parallel/command.sh Finished place_simultaneously in 25 seconds [~ 495 test (60.88560885608856%) started, 318 in queue, 32 running] Running Test swa_rna_gagu_15_combine_long_loop_sampling ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_15_combine_long_loop_sampling/command.sh Finished swm_rna_protonated_adenosine in 14 seconds [~ 496 test (61.00861008610086%) started, 317 in queue, 32 running] Running Test splice_out_H3_shorter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_H3_shorter/command.sh Finished docking_full_protocol in 27 seconds [~ 497 test (61.13161131611316%) started, 316 in queue, 32 running] Finished splice_out_H3_same in 20 seconds [~ 497 test (61.13161131611316%) started, 316 in queue, 31 running] Running Test splice_out_H3_longer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_H3_longer/command.sh Running Test residue_energy_breakdown ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/residue_energy_breakdown/command.sh Finished doug_dock_design_min_mod2_cal_cal in 28 seconds [~ 499 test (61.377613776137764%) started, 314 in queue, 32 running] Running Test readin_dna_rna_protein ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/readin_dna_rna_protein/command.sh Finished swm_rna_nickedhelix in 11 seconds [~ 500 test (61.50061500615006%) started, 313 in queue, 32 running] Running Test fuzzy ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fuzzy/command.sh Finished membrane_abinitio in 22 seconds [~ 501 test (61.62361623616236%) started, 312 in queue, 32 running] Running Test docking_ensemble_prepack ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_ensemble_prepack/command.sh Finished rna_design in 16 seconds [~ 502 test (61.74661746617466%) started, 311 in queue, 32 running] Running Test bundlegridsampler_multirepeat ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_multirepeat/command.sh Finished swm_protein_move_inside_helix_by_bond in 17 seconds [~ 503 test (61.86961869618696%) started, 310 in queue, 32 running] Running Test ThreadingInputter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ThreadingInputter/command.sh Finished next_generation_KIC in 47 seconds [~ 504 test (61.99261992619926%) started, 309 in queue, 32 running] Running Test score12_docking ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/score12_docking/command.sh Finished symm_rotamer_boltzmann in 33 seconds [~ 505 test (62.11562115621156%) started, 308 in queue, 32 running] Running Test rosetta_scripts_setup ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosetta_scripts_setup/command.sh Finished entropy_correction in 41 seconds [~ 506 test (62.23862238622386%) started, 307 in queue, 32 running] Running Test pocket_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pocket_relax/command.sh Finished loop_modeling in 23 seconds [~ 507 test (62.361623616236166%) started, 306 in queue, 32 running] Running Test mp_dock ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_dock/command.sh Finished pepspec in 23 seconds [~ 508 test (62.484624846248465%) started, 305 in queue, 32 running] Running Test bundlegridsampler_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bundlegridsampler_design/command.sh Finished UBQ_E2_thioester in 36 seconds [~ 509 test (62.607626076260765%) started, 304 in queue, 32 running] Running Test UBQ_Gp_LYX-Cterm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/UBQ_Gp_LYX-Cterm/command.sh Finished fixbb in 43 seconds [~ 510 test (62.730627306273064%) started, 303 in queue, 32 running] Running Test LayerDesign ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/LayerDesign/command.sh Finished bin_initialization in 24 seconds [~ 511 test (62.85362853628536%) started, 302 in queue, 32 running] Running Test swa_protein_build_at_Cterminus ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_protein_build_at_Cterminus/command.sh Finished mf_fixbb_des in 21 seconds [~ 512 test (62.97662976629766%) started, 301 in queue, 32 running] Running Test jd2test_PDBin_mmCIFout_extra_data_separate ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jd2test_PDBin_mmCIFout_extra_data_separate/command.sh Finished ligand_motif_design in 25 seconds [~ 513 test (63.09963099630996%) started, 300 in queue, 32 running] Running Test jd2test_PDBin_mmCIFout ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jd2test_PDBin_mmCIFout/command.sh Finished splice_out_L3_same in 26 seconds [~ 514 test (63.22263222632226%) started, 299 in queue, 32 running] Running Test jd2test_PDBIO ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jd2test_PDBIO/command.sh Finished torsion_restricted_sampling in 25 seconds [~ 515 test (63.34563345633456%) started, 298 in queue, 32 running] Running Test density_refine ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/density_refine/command.sh Finished sequence_profile_constraints in 25 seconds [~ 516 test (63.46863468634686%) started, 297 in queue, 32 running] Finished swa_rna_gagu_15_combine_long_loop_sampling in 15 seconds [~ 516 test (63.46863468634686%) started, 297 in queue, 31 running] Running Test add_constraints_to_current_conformation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/add_constraints_to_current_conformation/command.sh Running Test LayerSelector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/LayerSelector/command.sh Finished match_xml in 20 seconds [~ 518 test (63.714637146371466%) started, 295 in queue, 32 running] Running Test FloppyTail ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/FloppyTail/command.sh Finished helical_bundle_nonideal in 26 seconds [~ 519 test (63.837638376383765%) started, 294 in queue, 32 running] Running Test threefoldlinkermover_tbmb_symmetric ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/threefoldlinkermover_tbmb_symmetric/command.sh Finished rosetta_scripts_include in 27 seconds [~ 520 test (63.960639606396064%) started, 293 in queue, 32 running] Running Test swm_rna_loop_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_loop_design/command.sh Finished perturb_helical_bundle in 27 seconds [~ 521 test (64.08364083640836%) started, 292 in queue, 32 running] Running Test swm_rna_fourwayjunction ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_fourwayjunction/command.sh Finished readin_dna_rna_protein in 16 seconds [~ 522 test (64.20664206642067%) started, 291 in queue, 32 running] Running Test rna_puzzle6_j67_into_p6p7rigidbody_thread1 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_puzzle6_j67_into_p6p7rigidbody_thread1/command.sh Finished splice_out_H3_shorter in 18 seconds [~ 523 test (64.32964329643296%) started, 290 in queue, 32 running] Running Test posttranslationalmod_io ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/posttranslationalmod_io/command.sh Finished fuzzy in 18 seconds [~ 524 test (64.45264452644527%) started, 289 in queue, 32 running] Running Test motif_score_filter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/motif_score_filter/command.sh Finished genkic_lowmemory_mode in 27 seconds [~ 525 test (64.57564575645756%) started, 288 in queue, 32 running] Running Test cluster_alns ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cluster_alns/command.sh Finished docking_distance_constraints in 37 seconds [~ 526 test (64.69864698646987%) started, 287 in queue, 32 running] Running Test backrub ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/backrub/command.sh Finished mp_dock in 13 seconds [~ 527 test (64.82164821648216%) started, 286 in queue, 32 running] Running Test antibody_graft ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_graft/command.sh Finished flexpepdock_abinitio in 30 seconds [~ 528 test (64.94464944649447%) started, 285 in queue, 32 running] Running Test antibody_H3_camelid ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_H3_camelid/command.sh Finished residue_energy_breakdown in 24 seconds [~ 529 test (65.06765067650676%) started, 284 in queue, 32 running] Running Test score_only_silence ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/score_only_silence/command.sh Finished swm_rna_loop_design in 9 seconds [~ 530 test (65.19065190651907%) started, 283 in queue, 32 running] Running Test mf_flexbb_sc ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mf_flexbb_sc/command.sh Finished rosetta_scripts_setup in 17 seconds [~ 531 test (65.31365313653137%) started, 282 in queue, 32 running] Running Test UBQ_Gp_CYD-CYD ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/UBQ_Gp_CYD-CYD/command.sh Finished bundlegridsampler_multirepeat in 21 seconds [~ 532 test (65.43665436654366%) started, 281 in queue, 32 running] Running Test splice_out_L3_longer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_L3_longer/command.sh Finished ThreadingInputter in 21 seconds [~ 533 test (65.55965559655597%) started, 280 in queue, 32 running] Running Test simple_dna_test ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_dna_test/command.sh Finished features_parallel in 33 seconds [~ 534 test (65.68265682656826%) started, 279 in queue, 32 running] Running Test molfile_to_params ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/molfile_to_params/command.sh Finished FloppyTail in 16 seconds [~ 535 test (65.80565805658057%) started, 278 in queue, 32 running] Running Test continuous_sewing_hasher ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/continuous_sewing_hasher/command.sh Finished LayerDesign in 19 seconds [~ 536 test (65.92865928659286%) started, 277 in queue, 32 running] Finished rna_puzzle6_j67_into_p6p7rigidbody_thread1 in 12 seconds [~ 536 test (65.92865928659286%) started, 277 in queue, 31 running] Running Test centroid_from_fullatom ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/centroid_from_fullatom/command.sh Running Test ReadResfile_with_selector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ReadResfile_with_selector/command.sh Finished swa_protein_build_at_Cterminus in 19 seconds [~ 538 test (66.17466174661746%) started, 275 in queue, 32 running] Running Test AnchoredPDBCreator ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/AnchoredPDBCreator/command.sh Finished score12_docking in 25 seconds [~ 539 test (66.29766297662977%) started, 274 in queue, 32 running] Running Test threefoldlinkermover_tbmb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/threefoldlinkermover_tbmb/command.sh Finished swm_rna_fourwayjunction in 15 seconds [~ 540 test (66.42066420664207%) started, 273 in queue, 32 running] Running Test swa_rna_gagu_13_chunk_combination_and_closure ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_13_chunk_combination_and_closure/command.sh Finished continuous_sewing_hasher in 1 seconds [~ 541 test (66.54366543665436%) started, 272 in queue, 32 running] Running Test sequence_recovery ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sequence_recovery/command.sh Finished threefoldlinkermover_tbmb_symmetric in 16 seconds [~ 542 test (66.66666666666667%) started, 271 in queue, 32 running] Running Test genkic_bin_perturbing ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_bin_perturbing/command.sh Finished bundlegridsampler_design in 23 seconds [~ 543 test (66.78966789667896%) started, 270 in queue, 32 running] Running Test symmetric_cycpep_align_and_symmetrize ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symmetric_cycpep_align_and_symmetrize/command.sh Finished add_constraints_to_current_conformation in 21 seconds [~ 544 test (66.91266912669127%) started, 269 in queue, 32 running] Running Test splice_out_L3_shorter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/splice_out_L3_shorter/command.sh Finished LayerSelector in 21 seconds [~ 545 test (67.03567035670356%) started, 268 in queue, 32 running] Running Test ppk ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ppk/command.sh Finished cluster_alns in 15 seconds [~ 546 test (67.15867158671587%) started, 267 in queue, 32 running] Running Test mp_symmetry_load ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_symmetry_load/command.sh Finished jd2test_PDBin_mmCIFout_extra_data_separate in 23 seconds [~ 547 test (67.28167281672816%) started, 266 in queue, 32 running] Running Test ligand_dock_grid ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ligand_dock_grid/command.sh Finished pocket_relax in 26 seconds [~ 548 test (67.40467404674047%) started, 265 in queue, 32 running] Running Test rollmover ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rollmover/command.sh Finished jd2test_PDBin_mmCIFout in 24 seconds [~ 549 test (67.52767527675277%) started, 264 in queue, 32 running] Running Test oop_dock_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/oop_dock_design/command.sh Finished jd2test_PDBIO in 24 seconds [~ 550 test (67.65067650676507%) started, 263 in queue, 32 running] Running Test metalloprotein_abrelax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/metalloprotein_abrelax/command.sh Finished density_refine in 24 seconds [~ 551 test (67.77367773677737%) started, 262 in queue, 32 running] Running Test backbonegridsampler_nstruct_mode ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/backbonegridsampler_nstruct_mode/command.sh Finished UBQ_Gp_LYX-Cterm in 27 seconds [~ 552 test (67.89667896678966%) started, 261 in queue, 32 running] Finished posttranslationalmod_io in 19 seconds [~ 553 test (68.01968019680197%) started, 260 in queue, 32 running] Running Test backbonegridsampler_multiresidue ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/backbonegridsampler_multiresidue/command.sh Running Test LayerDesign_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/LayerDesign_symm/command.sh Finished motif_score_filter in 21 seconds [~ 554 test (68.14268142681426%) started, 259 in queue, 32 running] Running Test swm_rna_move_inside_helix_by_bond ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_move_inside_helix_by_bond/command.sh Finished mf_flexbb_sc in 16 seconds [~ 555 test (68.26568265682657%) started, 258 in queue, 32 running] Running Test startfrom_file ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/startfrom_file/command.sh Finished molfile_to_params in 14 seconds [~ 556 test (68.38868388683886%) started, 257 in queue, 32 running] Running Test simple_cycpep_predict_nmethyl ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/simple_cycpep_predict_nmethyl/command.sh Finished antibody_graft in 19 seconds [~ 557 test (68.51168511685117%) started, 256 in queue, 32 running] Running Test perturb_helical_bundle_z_offset ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/perturb_helical_bundle_z_offset/command.sh Finished simple_dna_test in 18 seconds [~ 558 test (68.63468634686348%) started, 255 in queue, 32 running] Running Test perturb_helical_bundle_epsilon ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/perturb_helical_bundle_epsilon/command.sh Finished swa_rna_gagu_13_chunk_combination_and_closure in 14 seconds [~ 559 test (68.75768757687577%) started, 254 in queue, 32 running] Running Test mp_mutate_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_mutate_relax/command.sh Finished genkic_bin_perturbing in 15 seconds [~ 560 test (68.88068880688807%) started, 253 in queue, 32 running] Finished splice_out_H3_longer in 46 seconds [~ 561 test (69.00369003690037%) started, 252 in queue, 32 running] Running Test minimize_with_elec_dens ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/minimize_with_elec_dens/command.sh Running Test metropolis_hastings ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/metropolis_hastings/command.sh Finished UBQ_Gp_CYD-CYD in 21 seconds [~ 562 test (69.12669126691267%) started, 251 in queue, 32 running] Running Test fold_cst_new ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fold_cst_new/command.sh Finished sequence_recovery in 15 seconds [~ 563 test (69.24969249692496%) started, 250 in queue, 32 running] Running Test favor_native_residue ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/favor_native_residue/command.sh Finished threefoldlinkermover_tbmb in 16 seconds [~ 564 test (69.37269372693727%) started, 249 in queue, 32 running] Running Test broker ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/broker/command.sh Finished score_only_silence in 23 seconds [~ 565 test (69.49569495694956%) started, 248 in queue, 32 running] Running Test bin_perturbation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/bin_perturbation/command.sh Finished symmetric_cycpep_align_and_symmetrize in 16 seconds [~ 566 test (69.61869618696187%) started, 247 in queue, 32 running] Running Test RBOut ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/RBOut/command.sh Finished ReadResfile_with_selector in 19 seconds [~ 567 test (69.74169741697418%) started, 246 in queue, 32 running] Running Test symmetry_multicomponent ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symmetry_multicomponent/command.sh Finished mp_symmetry_load in 14 seconds [~ 568 test (69.86469864698647%) started, 245 in queue, 32 running] Running Test symmetrical_residue_selector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symmetrical_residue_selector/command.sh Finished AnchoredPDBCreator in 20 seconds [~ 569 test (69.98769987699878%) started, 244 in queue, 32 running] Running Test swm_protein_move_inside_coiledcoil_by_bond ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_protein_move_inside_coiledcoil_by_bond/command.sh Finished oop_dock_design in 15 seconds [~ 570 test (70.11070110701107%) started, 243 in queue, 32 running] Running Test swa_rna_gagu_18_rebuild_bulge ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_18_rebuild_bulge/command.sh Finished simple_cycpep_predict_nmethyl in 9 seconds [~ 571 test (70.23370233702337%) started, 242 in queue, 32 running] Running Test swa_rna_gagu_10_prepend_and_ccd_close ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_10_prepend_and_ccd_close/command.sh Finished centroid_from_fullatom in 23 seconds [~ 572 test (70.35670356703567%) started, 241 in queue, 32 running] Finished ppk in 18 seconds [~ 572 test (70.35670356703567%) started, 241 in queue, 31 running] Running Test smallmover_resselector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/smallmover_resselector/command.sh Running Test rna_motif ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_motif/command.sh Finished metalloprotein_abrelax in 17 seconds [~ 574 test (70.60270602706026%) started, 239 in queue, 32 running] Finished swm_rna_move_inside_helix_by_bond in 12 seconds [~ 574 test (70.60270602706026%) started, 239 in queue, 31 running] Running Test repack_with_elec_dens ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/repack_with_elec_dens/command.sh Running Test rama_mutation_selector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rama_mutation_selector/command.sh Finished backbonegridsampler_nstruct_mode in 18 seconds [~ 576 test (70.84870848708488%) started, 237 in queue, 32 running] Running Test mp_range_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_range_relax/command.sh Finished LayerDesign_symm in 17 seconds [~ 577 test (70.97170971709717%) started, 236 in queue, 32 running] Running Test min_pack_min ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/min_pack_min/command.sh Finished rollmover in 19 seconds [~ 578 test (71.09471094710948%) started, 235 in queue, 32 running] Running Test make_symmdef_file ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_symmdef_file/command.sh Finished ligand_dock_grid in 20 seconds [~ 579 test (71.21771217712177%) started, 234 in queue, 32 running] Running Test genkic_ramaprepro_sampling ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_ramaprepro_sampling/command.sh Finished backbonegridsampler_multiresidue in 18 seconds [~ 580 test (71.34071340713407%) started, 233 in queue, 32 running] Running Test ddG_scan ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ddG_scan/command.sh Finished splice_out_L3_shorter in 23 seconds [~ 581 test (71.46371463714637%) started, 232 in queue, 32 running] Running Test UnsatSelector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/UnsatSelector/command.sh Finished mp_mutate_relax in 12 seconds [~ 582 test (71.58671586715867%) started, 231 in queue, 32 running] Running Test PeptideCyclizeMover ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/PeptideCyclizeMover/command.sh Finished splice_out_L3_longer in 32 seconds [~ 583 test (71.70971709717097%) started, 230 in queue, 32 running] Running Test symmetric_docking ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symmetric_docking/command.sh Finished perturb_helical_bundle_z_offset in 17 seconds [~ 584 test (71.83271832718327%) started, 229 in queue, 32 running] Running Test swm_protein_CCDmove ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_protein_CCDmove/command.sh Finished startfrom_file in 18 seconds [~ 585 test (71.95571955719558%) started, 228 in queue, 32 running] Running Test swa_rna_gagu_23_append_and_kic_close ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_23_append_and_kic_close/command.sh Finished perturb_helical_bundle_epsilon in 17 seconds [~ 586 test (72.07872078720787%) started, 227 in queue, 32 running] Running Test seed_ensemble_JD2_JI ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/seed_ensemble_JD2_JI/command.sh Finished fold_cst_new in 15 seconds [~ 587 test (72.20172201722018%) started, 226 in queue, 32 running] Running Test rna_farfar_syn_chi_res ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_farfar_syn_chi_res/command.sh Finished rna_motif in 9 seconds [~ 588 test (72.32472324723247%) started, 225 in queue, 32 running] Running Test mf_fixbb_sc ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mf_fixbb_sc/command.sh Finished symmetrical_residue_selector in 13 seconds [~ 589 test (72.44772447724478%) started, 224 in queue, 32 running] Running Test make_rot_lib ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_rot_lib/command.sh Finished bin_perturbation in 16 seconds [~ 590 test (72.57072570725707%) started, 223 in queue, 32 running] Running Test grid_scores_features ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/grid_scores_features/command.sh Finished swa_rna_gagu_18_rebuild_bulge in 13 seconds [~ 591 test (72.69372693726937%) started, 222 in queue, 32 running] Running Test density_denovo ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/density_denovo/command.sh Finished RBOut in 16 seconds [~ 592 test (72.81672816728167%) started, 221 in queue, 32 running] Running Test carbohydrates ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/carbohydrates/command.sh Finished swm_protein_move_inside_coiledcoil_by_bond in 15 seconds [~ 593 test (72.93972939729397%) started, 220 in queue, 32 running] Finished swa_rna_gagu_10_prepend_and_ccd_close in 14 seconds [~ 593 test (72.93972939729397%) started, 220 in queue, 31 running] Running Test swa_rna_gagu_11_append_and_ccd_close ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_11_append_and_ccd_close/command.sh Running Test rna_denovo_base_pair_setup ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_base_pair_setup/command.sh Finished mp_range_relax in 11 seconds [~ 595 test (73.18573185731857%) started, 218 in queue, 32 running] Running Test mp_vis_emb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_vis_emb/command.sh Finished metropolis_hastings in 20 seconds [~ 596 test (73.30873308733088%) started, 217 in queue, 32 running] Running Test mp_score_jd2 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_score_jd2/command.sh Finished broker in 20 seconds [~ 597 test (73.43173431734317%) started, 216 in queue, 32 running] Running Test mp_mutate_repack ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_mutate_repack/command.sh Finished smallmover_resselector in 15 seconds [~ 598 test (73.55473554735548%) started, 215 in queue, 32 running] Running Test metal_setup ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/metal_setup/command.sh Finished peptiderive in 120 seconds [~ 599 test (73.67773677736777%) started, 214 in queue, 32 running] Running Test helix_from_sequence ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helix_from_sequence/command.sh Finished minimize_with_elec_dens in 22 seconds [~ 600 test (73.80073800738008%) started, 213 in queue, 32 running] Running Test hbnet_use_input_rot ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbnet_use_input_rot/command.sh Finished rama_mutation_selector in 16 seconds [~ 601 test (73.92373923739237%) started, 212 in queue, 32 running] Running Test classic_relax_1a19 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/classic_relax_1a19/command.sh Finished repack_with_elec_dens in 18 seconds [~ 602 test (74.04674046740467%) started, 211 in queue, 32 running] Running Test buried_area_filter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/buried_area_filter/command.sh Finished genkic_ramaprepro_sampling in 16 seconds [~ 603 test (74.16974169741698%) started, 210 in queue, 32 running] Running Test DARC_sampling_on_the_fly ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DARC_sampling_on_the_fly/command.sh Finished mp_vis_emb in 6 seconds [~ 604 test (74.29274292742927%) started, 209 in queue, 32 running] Running Test DARC_make_ray_files ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DARC_make_ray_files/command.sh Finished mp_score_jd2 in 6 seconds [~ 605 test (74.41574415744158%) started, 208 in queue, 32 running] Running Test ConsensusLoopDesign ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ConsensusLoopDesign/command.sh Finished ddG_scan in 18 seconds [~ 606 test (74.53874538745387%) started, 207 in queue, 32 running] Running Test write_mol_file ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/write_mol_file/command.sh Finished min_pack_min in 19 seconds [~ 607 test (74.66174661746618%) started, 206 in queue, 32 running] Running Test swa_rna_gagu_22_prepend_and_kic_close ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_22_prepend_and_kic_close/command.sh Finished UnsatSelector in 17 seconds [~ 608 test (74.78474784747847%) started, 205 in queue, 32 running] Running Test swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide/command.sh Finished swa_rna_gagu_23_append_and_kic_close in 14 seconds [~ 609 test (74.90774907749078%) started, 204 in queue, 32 running] Running Test surface_docking ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/surface_docking/command.sh Finished symmetry_multicomponent in 25 seconds [~ 610 test (75.03075030750307%) started, 203 in queue, 32 running] Finished swm_protein_CCDmove in 15 seconds [~ 610 test (75.03075030750307%) started, 203 in queue, 31 running] Running Test stored_residue_subset ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/stored_residue_subset/command.sh Running Test rosetta_scripts_hbond_options ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosetta_scripts_hbond_options/command.sh Finished PeptideCyclizeMover in 18 seconds [~ 612 test (75.27675276752767%) started, 201 in queue, 32 running] Running Test resource_database_locator ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/resource_database_locator/command.sh Finished symmetric_docking in 18 seconds [~ 613 test (75.39975399753997%) started, 200 in queue, 32 running] Running Test loop_creation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/loop_creation/command.sh Finished mf_fixbb_sc in 14 seconds [~ 614 test (75.52275522755228%) started, 199 in queue, 32 running] Running Test longest_continuous_polar_segment_filter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/longest_continuous_polar_segment_filter/command.sh Finished rna_farfar_syn_chi_res in 15 seconds [~ 615 test (75.64575645756457%) started, 198 in queue, 32 running] Running Test jscore ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jscore/command.sh Finished favor_native_residue in 31 seconds [~ 616 test (75.76875768757688%) started, 197 in queue, 32 running] Finished mp_mutate_repack in 11 seconds [~ 616 test (75.76875768757688%) started, 197 in queue, 31 running] Running Test genkic_dihedral_copying ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_dihedral_copying/command.sh Running Test density_refine_symm ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/density_refine_symm/command.sh Finished DARC_sampling_on_the_fly in 6 seconds [~ 618 test (76.01476014760148%) started, 195 in queue, 32 running] Running Test database_session_resource ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/database_session_resource/command.sh Finished DARC_make_ray_files in 6 seconds [~ 619 test (76.13776137761377%) started, 194 in queue, 32 running] Running Test copy_rotamer_mover ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/copy_rotamer_mover/command.sh Finished swa_rna_gagu_11_append_and_ccd_close in 13 seconds [~ 620 test (76.26076260762608%) started, 193 in queue, 32 running] Running Test cluster ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cluster/command.sh Finished make_rot_lib in 16 seconds [~ 621 test (76.38376383763837%) started, 192 in queue, 32 running] Running Test broker_membrane ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/broker_membrane/command.sh Finished grid_scores_features in 16 seconds [~ 622 test (76.50676506765068%) started, 191 in queue, 32 running] Running Test InterfaceDdG ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceDdG/command.sh Finished helix_from_sequence in 12 seconds [~ 623 test (76.62976629766298%) started, 190 in queue, 32 running] Running Test zinc_homodimer_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/zinc_homodimer_design/command.sh Finished metal_setup in 13 seconds [~ 624 test (76.75276752767527%) started, 189 in queue, 32 running] Running Test test_computed_saxs_spectrum ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/test_computed_saxs_spectrum/command.sh Finished rna_denovo_base_pair_setup in 17 seconds [~ 625 test (76.87576875768758%) started, 188 in queue, 32 running] Running Test symmetry_data_resource ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/symmetry_data_resource/command.sh Finished density_denovo in 19 seconds [~ 626 test (76.99876998769987%) started, 187 in queue, 32 running] Running Test mp_transform_optimize ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_transform_optimize/command.sh Finished jscore in 8 seconds [~ 627 test (77.12177121771218%) started, 186 in queue, 32 running] Finished cluster in 6 seconds [~ 627 test (77.12177121771218%) started, 186 in queue, 31 running] Running Test make_and_perturb_bundle_multirepeat ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_and_perturb_bundle_multirepeat/command.sh Running Test gen_apo_grids ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/gen_apo_grids/command.sh Finished backrub in 64 seconds [~ 629 test (77.36777367773678%) started, 184 in queue, 32 running] Running Test cluster_filter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cluster_filter/command.sh Finished buried_area_filter in 14 seconds [~ 630 test (77.49077490774907%) started, 183 in queue, 32 running] Running Test binselector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/binselector/command.sh Finished antibody_H3_camelid in 64 seconds [~ 631 test (77.61377613776138%) started, 182 in queue, 32 running] Finished surface_docking in 13 seconds [~ 631 test (77.61377613776138%) started, 182 in queue, 31 running] Running Test abinitio ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/abinitio/command.sh Running Test UBQ_E2_thioester_two_ubiquitins ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/UBQ_E2_thioester_two_ubiquitins/command.sh Finished classic_relax_1a19 in 18 seconds [~ 633 test (77.85977859778598%) started, 180 in queue, 32 running] Running Test StrandHelixGeometryFilter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/StrandHelixGeometryFilter/command.sh Finished swa_rna_gagu_22_prepend_and_kic_close in 14 seconds [~ 634 test (77.98277982779828%) started, 179 in queue, 32 running] Running Test StrandCurvatureByLevels ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/StrandCurvatureByLevels/command.sh Finished swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide in 15 seconds [~ 635 test (78.10578105781057%) started, 178 in queue, 32 running] Finished stored_residue_subset in 14 seconds [~ 635 test (78.10578105781057%) started, 178 in queue, 31 running] Running Test HelixBendFilter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/HelixBendFilter/command.sh Running Test zinc_homodimer_setup ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/zinc_homodimer_setup/command.sh Finished ConsensusLoopDesign in 16 seconds [~ 637 test (78.35178351783517%) started, 176 in queue, 32 running] Running Test swa_rna_gagu_14_combine_long_loop_filtering ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_14_combine_long_loop_filtering/command.sh Finished write_mol_file in 16 seconds [~ 638 test (78.47478474784748%) started, 175 in queue, 32 running] Running Test swa_rna_gagu_12_helix_addition ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_12_helix_addition/command.sh Finished carbohydrates in 25 seconds [~ 639 test (78.59778597785977%) started, 174 in queue, 32 running] Running Test set_torsion ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/set_torsion/command.sh Finished broker_membrane in 11 seconds [~ 640 test (78.72078720787208%) started, 173 in queue, 32 running] Running Test rna_puzzle6_U75G76A77_on_thread1 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_puzzle6_U75G76A77_on_thread1/command.sh Finished longest_continuous_polar_segment_filter in 14 seconds [~ 641 test (78.84378843788438%) started, 172 in queue, 32 running] Running Test referencepose_mutateresidue ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/referencepose_mutateresidue/command.sh Finished cluster_filter in 5 seconds [~ 642 test (78.96678966789668%) started, 171 in queue, 32 running] Running Test recces_turner ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/recces_turner/command.sh Finished resource_database_locator in 16 seconds [~ 643 test (79.08979089790898%) started, 170 in queue, 32 running] Running Test pocket_measure ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pocket_measure/command.sh Finished density_refine_symm in 14 seconds [~ 644 test (79.21279212792128%) started, 169 in queue, 32 running] Finished swa_rna_gagu_14_combine_long_loop_filtering in 3 seconds [~ 644 test (79.21279212792128%) started, 169 in queue, 31 running] Running Test phiselector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/phiselector/command.sh Running Test ncaa_fixbb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ncaa_fixbb/command.sh Finished make_symmdef_file in 37 seconds [~ 646 test (79.45879458794587%) started, 167 in queue, 32 running] Finished rosetta_scripts_hbond_options in 18 seconds [~ 646 test (79.45879458794587%) started, 167 in queue, 31 running] Finished loop_creation in 16 seconds [~ 646 test (79.45879458794587%) started, 167 in queue, 30 running] Running Test mp_dock_setup ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_dock_setup/command.sh Running Test helical_bundle ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/helical_bundle/command.sh Running Test genkic_bin_setting ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_bin_setting/command.sh Finished genkic_dihedral_copying in 15 seconds [~ 649 test (79.82779827798278%) started, 164 in queue, 32 running] Finished copy_rotamer_mover in 13 seconds [~ 649 test (79.82779827798278%) started, 164 in queue, 31 running] Running Test features_pdb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/features_pdb/command.sh Running Test cst_info ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cst_info/command.sh Finished mp_transform_optimize in 9 seconds [~ 651 test (80.07380073800738%) started, 162 in queue, 32 running] Running Test binselector_probins ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/binselector_probins/command.sh Finished database_session_resource in 16 seconds [~ 652 test (80.19680196801968%) started, 161 in queue, 32 running] Running Test backbonegridsampler ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/backbonegridsampler/command.sh Finished gen_apo_grids in 10 seconds [~ 653 test (80.31980319803198%) started, 160 in queue, 32 running] Running Test add_job_pair_data ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/add_job_pair_data/command.sh Finished InterfaceDdG in 16 seconds [~ 654 test (80.44280442804428%) started, 159 in queue, 32 running] Running Test SecondaryStructureFilter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/SecondaryStructureFilter/command.sh Finished hbnet_use_input_rot in 29 seconds [~ 655 test (80.56580565805658%) started, 158 in queue, 32 running] Running Test OversaturatedHbondAcceptorFilter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/OversaturatedHbondAcceptorFilter/command.sh Finished symmetry_data_resource in 16 seconds [~ 656 test (80.68880688806888%) started, 157 in queue, 32 running] Finished make_and_perturb_bundle_multirepeat in 13 seconds [~ 656 test (80.68880688806888%) started, 157 in queue, 31 running] Running Test MutateResidue_selector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/MutateResidue_selector/command.sh Running Test LoopLengthChange ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/LoopLengthChange/command.sh Finished zinc_homodimer_design in 18 seconds [~ 658 test (80.93480934809348%) started, 155 in queue, 32 running] Running Test InterfaceAnalyzer_resfile ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_resfile/command.sh Finished abinitio in 11 seconds [~ 659 test (81.05781057810579%) started, 154 in queue, 32 running] Running Test InterfaceAnalyzer_bothpack ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_bothpack/command.sh Finished test_computed_saxs_spectrum in 18 seconds [~ 660 test (81.18081180811808%) started, 153 in queue, 32 running] Running Test FilterReportAsPoseExtraScoresMover ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/FilterReportAsPoseExtraScoresMover/command.sh Finished rna_puzzle6_U75G76A77_on_thread1 in 9 seconds [~ 661 test (81.30381303813039%) started, 152 in queue, 32 running] Running Test unfolded_state_energy_calc ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/unfolded_state_energy_calc/command.sh Finished binselector in 14 seconds [~ 662 test (81.42681426814268%) started, 151 in queue, 32 running] Running Test real_virt_mover ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/real_virt_mover/command.sh Finished docking_ensemble_prepack in 99 seconds [~ 663 test (81.54981549815498%) started, 150 in queue, 32 running] Running Test pwsho ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pwsho/command.sh Finished zinc_homodimer_setup in 12 seconds [~ 664 test (81.67281672816728%) started, 149 in queue, 32 running] Running Test mp_interface_statistics ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_interface_statistics/command.sh Finished swa_rna_gagu_12_helix_addition in 12 seconds [~ 665 test (81.79581795817958%) started, 148 in queue, 32 running] Finished mp_dock_setup in 9 seconds [~ 665 test (81.79581795817958%) started, 148 in queue, 31 running] Running Test mp_dock_prepack ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_dock_prepack/command.sh Running Test hbondstoresidue_selector ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hbondstoresidue_selector/command.sh Finished set_torsion in 13 seconds [~ 667 test (82.04182041820418%) started, 146 in queue, 32 running] Running Test genkic_bin_sampling ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/genkic_bin_sampling/command.sh Finished StrandHelixGeometryFilter in 15 seconds [~ 668 test (82.16482164821649%) started, 145 in queue, 32 running] Running Test PeptideStubMover_prependRepeat ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/PeptideStubMover_prependRepeat/command.sh Finished recces_turner in 13 seconds [~ 669 test (82.28782287822878%) started, 144 in queue, 32 running] Running Test ModifyVariantTypeMover ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ModifyVariantTypeMover/command.sh Finished StrandCurvatureByLevels in 15 seconds [~ 670 test (82.41082410824109%) started, 143 in queue, 32 running] Running Test InterfaceAnalyzer_prepack ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_prepack/command.sh Finished HelixBendFilter in 15 seconds [~ 671 test (82.53382533825338%) started, 142 in queue, 32 running] Finished referencepose_mutateresidue in 13 seconds [~ 671 test (82.53382533825338%) started, 142 in queue, 31 running] Running Test FlipChirality ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/FlipChirality/command.sh Running Test AddConstraintsToCurrentConformationMover ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/AddConstraintsToCurrentConformationMover/command.sh Finished pocket_measure in 13 seconds [~ 673 test (82.77982779827798%) started, 140 in queue, 32 running] Running Test vancomycin ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/vancomycin/command.sh Finished phiselector in 13 seconds [~ 674 test (82.90282902829028%) started, 139 in queue, 32 running] Finished helical_bundle in 13 seconds [~ 674 test (82.90282902829028%) started, 139 in queue, 31 running] Finished genkic_bin_setting in 13 seconds [~ 674 test (82.90282902829028%) started, 139 in queue, 30 running] Running Test swa_rna_gagu_03_append_to_silent ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_03_append_to_silent/command.sh Running Test silent2frag ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/silent2frag/command.sh Running Test rb_recces ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rb_recces/command.sh Finished pwsho in 6 seconds [~ 677 test (83.27183271832719%) started, 136 in queue, 32 running] Running Test mpi_multistate_design ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mpi_multistate_design/command.sh Finished binselector_probins in 13 seconds [~ 678 test (83.39483394833948%) started, 135 in queue, 32 running] Running Test assemble_domains_jd2 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/assemble_domains_jd2/command.sh Finished UBQ_E2_thioester_two_ubiquitins in 20 seconds [~ 679 test (83.51783517835179%) started, 134 in queue, 32 running] Finished mp_interface_statistics in 6 seconds [~ 679 test (83.51783517835179%) started, 134 in queue, 31 running] Running Test antibody_numbering_converter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/antibody_numbering_converter/command.sh Running Test site_constraint ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/site_constraint/command.sh Finished backbonegridsampler in 13 seconds [~ 681 test (83.76383763837639%) started, 132 in queue, 32 running] Finished mp_dock_prepack in 6 seconds [~ 681 test (83.76383763837639%) started, 132 in queue, 31 running] Running Test rna_farfar_noncanonical_hairpin ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_farfar_noncanonical_hairpin/command.sh Running Test r_pdb2top ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/r_pdb2top/command.sh Finished features_pdb in 16 seconds [~ 683 test (84.00984009840099%) started, 130 in queue, 32 running] Finished cst_info in 16 seconds [~ 683 test (84.00984009840099%) started, 130 in queue, 31 running] Running Test pepspec_anchor_dock ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pepspec_anchor_dock/command.sh Running Test identify_cdr_clusters ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/identify_cdr_clusters/command.sh Finished InterfaceAnalyzer_resfile in 11 seconds [~ 685 test (84.25584255842558%) started, 128 in queue, 32 running] Running Test fragment_picker ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fragment_picker/command.sh Finished add_job_pair_data in 15 seconds [~ 686 test (84.37884378843789%) started, 127 in queue, 32 running] Finished InterfaceAnalyzer_bothpack in 11 seconds [~ 686 test (84.37884378843789%) started, 127 in queue, 31 running] Finished unfolded_state_energy_calc in 10 seconds [~ 686 test (84.37884378843789%) started, 127 in queue, 30 running] Finished silent2frag in 4 seconds [~ 686 test (84.37884378843789%) started, 127 in queue, 29 running] Running Test phosphonate ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/phosphonate/command.sh Running Test metalloprotein_broker ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/metalloprotein_broker/command.sh Running Test include_cc_check ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/include_cc_check/command.sh Running Test docking_prepack ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_prepack/command.sh Finished r_pdb2top in 3 seconds [~ 690 test (84.87084870848709%) started, 123 in queue, 32 running] Running Test InterfaceAnalyzer_tracer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_tracer/command.sh Finished seed_ensemble_JD2_JI in 51 seconds [~ 691 test (84.99384993849938%) started, 122 in queue, 32 running] Running Test InterfaceAnalyzer_allscores ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer_allscores/command.sh Finished SecondaryStructureFilter in 15 seconds [~ 692 test (85.11685116851169%) started, 121 in queue, 32 running] Running Test InterfaceAnalyzer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/InterfaceAnalyzer/command.sh Finished OversaturatedHbondAcceptorFilter in 15 seconds [~ 693 test (85.23985239852398%) started, 120 in queue, 32 running] Finished site_constraint in 5 seconds [~ 693 test (85.23985239852398%) started, 120 in queue, 31 running] Running Test swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump/command.sh Running Test swa_rna_gagu_17_append_floating_base ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_17_append_floating_base/command.sh sed: 1: "cc_includes.txt": command c expects \ followed by text Finished LoopLengthChange in 14 seconds [~ 695 test (85.48585485854859%) started, 118 in queue, 32 running] Running Test swa_rna_gagu_08_append_dinucleotide ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_08_append_dinucleotide/command.sh Finished include_cc_check in 3 seconds [~ 696 test (85.60885608856088%) started, 117 in queue, 32 running] Running Test swa_rna_gagu_06_append_to_3primeterminus ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_06_append_to_3primeterminus/command.sh Finished MutateResidue_selector in 15 seconds [~ 697 test (85.73185731857319%) started, 116 in queue, 32 running] Running Test swa_rna_gagu_05_prepend_to_5primeterminus ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_05_prepend_to_5primeterminus/command.sh Finished InterfaceAnalyzer_prepack in 10 seconds [~ 698 test (85.85485854858548%) started, 115 in queue, 32 running] Running Test swa_rna_gagu_02_prepend ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_02_prepend/command.sh Finished FilterReportAsPoseExtraScoresMover in 15 seconds [~ 699 test (85.97785977859779%) started, 114 in queue, 32 running] Running Test swa_rna_gagu_01_append ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_01_append/command.sh Finished antibody_numbering_converter in 7 seconds [~ 700 test (86.10086100861008%) started, 113 in queue, 32 running] Running Test struc_set_fragment_picker ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/struc_set_fragment_picker/command.sh Finished hbondstoresidue_selector in 13 seconds [~ 701 test (86.22386223862239%) started, 112 in queue, 32 running] Finished swa_rna_gagu_03_append_to_silent in 9 seconds [~ 701 test (86.22386223862239%) started, 112 in queue, 31 running] Running Test rna_helix ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_helix/command.sh Running Test rna_denovo_grid_vdw ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_grid_vdw/command.sh Finished genkic_bin_sampling in 13 seconds [~ 703 test (86.46986469864699%) started, 110 in queue, 32 running] Running Test hotspot_stub_constraints ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hotspot_stub_constraints/command.sh Finished real_virt_mover in 16 seconds [~ 704 test (86.5928659286593%) started, 109 in queue, 32 running] Finished fragment_picker in 5 seconds [~ 704 test (86.5928659286593%) started, 109 in queue, 31 running] Running Test glycan_clash_check ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/glycan_clash_check/command.sh Running Test geometric_solvation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/geometric_solvation/command.sh Finished rb_recces in 10 seconds [~ 706 test (86.83886838868389%) started, 107 in queue, 32 running] Running Test ProQ ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ProQ/command.sh Finished assemble_domains_jd2 in 9 seconds [~ 707 test (86.96186961869618%) started, 106 in queue, 32 running] Running Test swm_rna_move_align_dock ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_move_align_dock/command.sh Finished identify_cdr_clusters in 7 seconds [~ 708 test (87.08487084870849%) started, 105 in queue, 32 running] Running Test swa_rna_gagu_20_append_floating_base_by_jump ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_20_append_floating_base_by_jump/command.sh Finished ModifyVariantTypeMover in 13 seconds [~ 709 test (87.20787207872078%) started, 104 in queue, 32 running] Running Test swa_rna_gagu_19_prepend_floating_base_by_jump ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_19_prepend_floating_base_by_jump/command.sh Finished mpi_multistate_design in 10 seconds [~ 710 test (87.33087330873309%) started, 103 in queue, 32 running] Running Test swa_rna_gagu_07_prepend_dinucleotide ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_07_prepend_dinucleotide/command.sh Finished pepspec_anchor_dock in 9 seconds [~ 711 test (87.45387453874538%) started, 102 in queue, 32 running] Finished phosphonate in 7 seconds [~ 711 test (87.45387453874538%) started, 102 in queue, 31 running] Running Test sequence_tolerance ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sequence_tolerance/command.sh Running Test score_jd2 ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/score_jd2/command.sh Finished PeptideStubMover_prependRepeat in 15 seconds [~ 713 test (87.69987699877%) started, 100 in queue, 32 running] Running Test orbitals ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/orbitals/command.sh Finished AddConstraintsToCurrentConformationMover in 15 seconds [~ 714 test (87.82287822878229%) started, 99 in queue, 32 running] Running Test mp_transform ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_transform/command.sh Finished metalloprotein_broker in 8 seconds [~ 715 test (87.9458794587946%) started, 98 in queue, 32 running] Running Test fragmentpicker_integration_demo ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fragmentpicker_integration_demo/command.sh Finished InterfaceAnalyzer_tracer in 9 seconds [~ 716 test (88.06888068880689%) started, 97 in queue, 32 running] Running Test fold_and_dock ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fold_and_dock/command.sh Finished InterfaceAnalyzer_allscores in 9 seconds [~ 717 test (88.19188191881919%) started, 96 in queue, 32 running] Running Test extract_atomtree_diffs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/extract_atomtree_diffs/command.sh Finished FlipChirality in 16 seconds [~ 718 test (88.31488314883148%) started, 95 in queue, 32 running] Running Test docking_low_res ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_low_res/command.sh Finished vancomycin in 15 seconds [~ 719 test (88.43788437884379%) started, 94 in queue, 32 running] Running Test swm_protein_preminimize ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_protein_preminimize/command.sh Finished swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump in 8 seconds [~ 720 test (88.56088560885608%) started, 93 in queue, 32 running] Running Test swm_protein_from_scratch ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_protein_from_scratch/command.sh Finished docking_prepack in 10 seconds [~ 721 test (88.68388683886839%) started, 92 in queue, 32 running] Running Test swa_rna_loop_clusterer ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_loop_clusterer/command.sh Finished ncaa_fixbb in 29 seconds [~ 722 test (88.8068880688807%) started, 91 in queue, 32 running] Finished swa_rna_gagu_08_append_dinucleotide in 8 seconds [~ 722 test (88.8068880688807%) started, 91 in queue, 31 running] Running Test shobuns ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/shobuns/command.sh Running Test rna_ribosome_tether ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_ribosome_tether/command.sh Finished swa_rna_gagu_17_append_floating_base in 8 seconds [~ 724 test (89.0528905289053%) started, 89 in queue, 32 running] Finished swa_rna_gagu_05_prepend_to_5primeterminus in 8 seconds [~ 724 test (89.0528905289053%) started, 89 in queue, 31 running] Running Test rna_minimize ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_minimize/command.sh Running Test rna_denovo_bps_helix_ends ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_bps_helix_ends/command.sh Finished swa_rna_gagu_06_append_to_3primeterminus in 8 seconds [~ 726 test (89.2988929889299%) started, 87 in queue, 32 running] Finished rna_helix in 6 seconds [~ 726 test (89.2988929889299%) started, 87 in queue, 31 running] Running Test rna_denovo_bps_fixed_ends ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_denovo_bps_fixed_ends/command.sh Running Test pna ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pna/command.sh Finished swa_rna_gagu_02_prepend in 8 seconds [~ 728 test (89.54489544895449%) started, 85 in queue, 32 running] Running Test per_residue_energies ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/per_residue_energies/command.sh Finished geometric_solvation in 6 seconds [~ 729 test (89.66789667896678%) started, 84 in queue, 32 running] Running Test match_1c2t ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/match_1c2t/command.sh Finished swa_rna_gagu_01_append in 8 seconds [~ 730 test (89.79089790897909%) started, 83 in queue, 32 running] Finished glycan_clash_check in 6 seconds [~ 730 test (89.79089790897909%) started, 83 in queue, 31 running] Running Test jrelax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/jrelax/command.sh Running Test ig_dump ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ig_dump/command.sh Finished struc_set_fragment_picker in 8 seconds [~ 732 test (90.03690036900369%) started, 81 in queue, 32 running] Running Test erraser_minimize ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/erraser_minimize/command.sh Finished rna_denovo_grid_vdw in 8 seconds [~ 733 test (90.159901599016%) started, 80 in queue, 32 running] Running Test density_tools ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/density_tools/command.sh Finished hotspot_stub_constraints in 8 seconds [~ 734 test (90.28290282902829%) started, 79 in queue, 32 running] Finished ProQ in 7 seconds [~ 734 test (90.28290282902829%) started, 79 in queue, 31 running] Running Test database_jd2_io ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/database_jd2_io/command.sh Finished swm_rna_move_align_dock in 7 seconds [~ 736 test (90.52890528905289%) started, 77 in queue, 32 running] Running Test database_jd2_compact_io ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/database_jd2_compact_io/command.sh Running Test c-term_conjugation ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/c-term_conjugation/command.sh Finished swa_rna_loop_clusterer in 2 seconds [~ 737 test (90.6519065190652%) started, 76 in queue, 32 running] Running Test angle_recovery_stats ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/angle_recovery_stats/command.sh Finished mp_transform in 5 seconds [~ 738 test (90.77490774907749%) started, 75 in queue, 32 running] Running Test swa_rna_loop_sampler ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_loop_sampler/command.sh Finished swa_rna_gagu_20_append_floating_base_by_jump in 8 seconds [~ 739 test (90.89790897908979%) started, 74 in queue, 32 running] Running Test mg_modeler ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mg_modeler/command.sh Finished swa_rna_gagu_19_prepend_floating_base_by_jump in 8 seconds [~ 740 test (91.0209102091021%) started, 73 in queue, 32 running] Running Test gen_lig_grids ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/gen_lig_grids/command.sh Finished swa_rna_gagu_07_prepend_dinucleotide in 8 seconds [~ 741 test (91.14391143911439%) started, 72 in queue, 32 running] Finished fragmentpicker_integration_demo in 6 seconds [~ 741 test (91.14391143911439%) started, 72 in queue, 31 running] Running Test distances ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/distances/command.sh Running Test cs_rosetta_rna ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cs_rosetta_rna/command.sh Finished sequence_tolerance in 8 seconds [~ 743 test (91.38991389913899%) started, 70 in queue, 32 running] Running Test swm_rna_move_two_strands ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swm_rna_move_two_strands/command.sh Finished extract_atomtree_diffs in 6 seconds [~ 744 test (91.5129151291513%) started, 69 in queue, 32 running] Running Test super_aln ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/super_aln/command.sh Finished orbitals in 8 seconds [~ 745 test (91.63591635916359%) started, 68 in queue, 32 running] Running Test rotamer_recovery_compare_two_structures ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rotamer_recovery_compare_two_structures/command.sh Finished swm_protein_preminimize in 6 seconds [~ 746 test (91.7589175891759%) started, 67 in queue, 32 running] Running Test pH_mode ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pH_mode/command.sh Finished rna_denovo_bps_helix_ends in 5 seconds [~ 747 test (91.88191881918819%) started, 66 in queue, 32 running] Running Test header_using_check ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/header_using_check/command.sh Finished angle_recovery_stats in 3 seconds [~ 748 test (92.00492004920049%) started, 65 in queue, 32 running] Finished match_1c2t in 5 seconds [~ 749 test (92.12792127921279%) started, 64 in queue, 32 running] Running Test fix_alignment_to_match_pdb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fix_alignment_to_match_pdb/command.sh Running Test docking_local_refine_min ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/docking_local_refine_min/command.sh Finished shobuns in 6 seconds [~ 750 test (92.25092250922509%) started, 63 in queue, 32 running] Finished rna_ribosome_tether in 6 seconds [~ 750 test (92.25092250922509%) started, 63 in queue, 31 running] Finished rna_denovo_bps_fixed_ends in 6 seconds [~ 750 test (92.25092250922509%) started, 63 in queue, 30 running] Running Test sweep_respair_energies ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/sweep_respair_energies/command.sh Running Test swa_rna_gagu_04_clustering ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/swa_rna_gagu_04_clustering/command.sh Running Test select_best_unique_ligand_poses ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/select_best_unique_ligand_poses/command.sh Finished per_residue_energies in 6 seconds [~ 753 test (92.619926199262%) started, 60 in queue, 32 running] Finished header_using_check in 1 seconds [~ 753 test (92.619926199262%) started, 60 in queue, 31 running] Running Test pocket_suggest_targets ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/pocket_suggest_targets/command.sh Running Test mp_loadtime ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_loadtime/command.sh Finished jrelax in 6 seconds [~ 755 test (92.8659286592866%) started, 58 in queue, 32 running] Running Test mg_modeler_lores ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mg_modeler_lores/command.sh egrep: full_minimize_temp_1.out: No such file or directory Finished score_jd2 in 11 seconds [~ 756 test (92.98892988929889%) started, 57 in queue, 32 running] Finished docking_low_res in 8 seconds [~ 756 test (92.98892988929889%) started, 57 in queue, 31 running] Finished ig_dump in 6 seconds [~ 756 test (92.98892988929889%) started, 57 in queue, 30 running] Finished erraser_minimize in 6 seconds [~ 756 test (92.98892988929889%) started, 57 in queue, 29 running] Running Test measure_lcaa_radii ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/measure_lcaa_radii/command.sh Running Test contactMap ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/contactMap/command.sh Running Test constel ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/constel/command.sh Running Test buried_unsat_kinemage ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/buried_unsat_kinemage/command.sh Finished rna_farfar_noncanonical_hairpin in 22 seconds [~ 760 test (93.4809348093481%) started, 53 in queue, 32 running] Running Test RescorePDDF ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/RescorePDDF/command.sh Finished rna_minimize in 8 seconds [~ 761 test (93.60393603936039%) started, 52 in queue, 32 running] Running Test template_features ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/template_features/command.sh Finished density_tools in 7 seconds [~ 762 test (93.7269372693727%) started, 51 in queue, 32 running] Running Test noe_assignment ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/noe_assignment/command.sh Finished c-term_conjugation in 6 seconds [~ 763 test (93.84993849938499%) started, 50 in queue, 32 running] Finished swa_rna_loop_sampler in 6 seconds [~ 763 test (93.84993849938499%) started, 50 in queue, 31 running] Running Test motif_extraction ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/motif_extraction/command.sh Running Test cstfile_to_theozyme_pdb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cstfile_to_theozyme_pdb/command.sh Finished swm_protein_from_scratch in 9 seconds [~ 765 test (94.09594095940959%) started, 48 in queue, 32 running] Finished super_aln in 4 seconds [~ 765 test (94.09594095940959%) started, 48 in queue, 31 running] Finished swa_rna_gagu_04_clustering in 2 seconds [~ 765 test (94.09594095940959%) started, 48 in queue, 30 running] Running Test rna_screen_phosphates ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_screen_phosphates/command.sh Running Test rna_score ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_score/command.sh Running Test nucleobase_sample_around ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/nucleobase_sample_around/command.sh Finished fold_and_dock in 11 seconds [~ 768 test (94.4649446494465%) started, 45 in queue, 32 running] Finished mg_modeler in 6 seconds [~ 768 test (94.4649446494465%) started, 45 in queue, 31 running] Running Test fit_helixparams_rms ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fit_helixparams_rms/command.sh Running Test cluster_calibur ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/cluster_calibur/command.sh Calibur clustering has been broken since its inception. The external version was never successfully integration tested because of typos in the integration test. The version ported to Rosetta has never worked either. Since now it causes hard-failures on release_debug, it needs to be deactivated for now. Finished gen_lig_grids in 6 seconds [~ 770 test (94.71094710947109%) started, 43 in queue, 32 running] Finished cluster_calibur in 0 seconds [~ 770 test (94.71094710947109%) started, 43 in queue, 31 running] Running Test DARC_shapeonly ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DARC_shapeonly/command.sh Running Test test_idealize ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/test_idealize/command.sh Finished cs_rosetta_rna in 6 seconds [~ 772 test (94.95694956949569%) started, 41 in queue, 32 running] Finished swm_rna_move_two_strands in 5 seconds [~ 772 test (94.95694956949569%) started, 41 in queue, 31 running] Running Test rna_minimize_6D_loop_close ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_minimize_6D_loop_close/command.sh Running Test report_hbonds_for_plugin ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/report_hbonds_for_plugin/command.sh Finished distances in 6 seconds [~ 774 test (95.20295202952029%) started, 39 in queue, 32 running] Running Test per_residue_sc_sasa ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/per_residue_sc_sasa/command.sh Finished pH_mode in 5 seconds [~ 775 test (95.3259532595326%) started, 38 in queue, 32 running] Running Test oop_create ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/oop_create/command.sh Finished rotamer_recovery_compare_two_structures in 6 seconds [~ 776 test (95.44895448954489%) started, 37 in queue, 32 running] Running Test minimize_6Dloopclose ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/minimize_6Dloopclose/command.sh Finished select_best_unique_ligand_poses in 5 seconds [~ 777 test (95.5719557195572%) started, 36 in queue, 32 running] Running Test ld_converter ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ld_converter/command.sh Finished fix_alignment_to_match_pdb in 6 seconds [~ 778 test (95.6949569495695%) started, 35 in queue, 32 running] Running Test features_database_schema ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/features_database_schema/command.sh Finished mp_loadtime in 5 seconds [~ 779 test (95.8179581795818%) started, 34 in queue, 32 running] Running Test centroid_disulfide_scores ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/centroid_disulfide_scores/command.sh Finished contactMap in 4 seconds [~ 780 test (95.9409594095941%) started, 33 in queue, 32 running] Finished RescorePDDF in 4 seconds [~ 780 test (95.9409594095941%) started, 33 in queue, 31 running] Running Test DARC_electrostatics ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/DARC_electrostatics/command.sh Running Test rna_suitename ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_suitename/command.sh Finished docking_local_refine_min in 6 seconds [~ 782 test (96.1869618696187%) started, 31 in queue, 32 running] Finished mg_modeler_lores in 5 seconds [~ 782 test (96.1869618696187%) started, 31 in queue, 31 running] Finished template_features in 4 seconds [~ 782 test (96.1869618696187%) started, 31 in queue, 30 running] Finished cstfile_to_theozyme_pdb in 3 seconds [~ 782 test (96.1869618696187%) started, 31 in queue, 29 running] Finished DARC_shapeonly in 3 seconds [~ 782 test (96.1869618696187%) started, 31 in queue, 28 running] Running Test rna_add_WC_stats ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_add_WC_stats/command.sh Running Test rings ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rings/command.sh Running Test ralford_dump_rotamers ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/ralford_dump_rotamers/command.sh Running Test mp_span_from_pdb ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_span_from_pdb/command.sh Running Test make_exemplar ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/make_exemplar/command.sh Finished sweep_respair_energies in 6 seconds [~ 787 test (96.8019680196802%) started, 26 in queue, 32 running] Finished motif_extraction in 4 seconds [~ 787 test (96.8019680196802%) started, 26 in queue, 31 running] Finished test_idealize in 3 seconds [~ 787 test (96.8019680196802%) started, 26 in queue, 30 running] Running Test loop_hash ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/loop_hash/command.sh Running Test fit_helixparams_a3b ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fit_helixparams_a3b/command.sh Running Test code_template_tests_src ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/code_template_tests_src/command.sh Finished fit_helixparams_rms in 3 seconds [~ 790 test (97.1709717097171%) started, 23 in queue, 32 running] Finished rna_minimize_6D_loop_close in 3 seconds [~ 790 test (97.1709717097171%) started, 23 in queue, 31 running] Finished report_hbonds_for_plugin in 3 seconds [~ 790 test (97.1709717097171%) started, 23 in queue, 30 running] Running Test calculate_sasa ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/calculate_sasa/command.sh Running Test CCD_loop_closure ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/CCD_loop_closure/command.sh Finished nucleobase_sample_around in 4 seconds [~ 793 test (97.539975399754%) started, 20 in queue, 32 running] Running Test test_d_l_readin ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/test_d_l_readin/command.sh Running Test rna_cluster ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rna_cluster/command.sh Finished pocket_suggest_targets in 6 seconds [~ 794 test (97.66297662976629%) started, 19 in queue, 32 running] Running Test r_rmsf ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/r_rmsf/command.sh Finished per_residue_sc_sasa in 3 seconds [~ 795 test (97.7859778597786%) started, 18 in queue, 32 running] Running Test number_of_residuetypes ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/number_of_residuetypes/command.sh Finished measure_lcaa_radii in 6 seconds [~ 796 test (97.9089790897909%) started, 17 in queue, 32 running] Finished rna_screen_phosphates in 4 seconds [~ 796 test (97.9089790897909%) started, 17 in queue, 31 running] Running Test non-canonical_connectivities ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/non-canonical_connectivities/command.sh Finished buried_unsat_kinemage in 6 seconds [~ 798 test (98.1549815498155%) started, 15 in queue, 32 running] Running Test fit_helixparams ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/fit_helixparams/command.sh Running Test combine_silent ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/combine_silent/command.sh Finished database_jd2_io in 12 seconds [~ 799 test (98.2779827798278%) started, 14 in queue, 32 running] Finished database_jd2_compact_io in 12 seconds [~ 799 test (98.2779827798278%) started, 14 in queue, 31 running] Running Test BuildPeptide ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/BuildPeptide/command.sh Finished constel in 6 seconds [~ 801 test (98.5239852398524%) started, 12 in queue, 32 running] Running Test score_aln ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/score_aln/command.sh Running Test rosetta_scripts_info ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/rosetta_scripts_info/command.sh Finished noe_assignment in 5 seconds [~ 802 test (98.6469864698647%) started, 11 in queue, 32 running] Finished oop_create in 3 seconds [~ 802 test (98.6469864698647%) started, 11 in queue, 31 running] Finished minimize_6Dloopclose in 3 seconds [~ 802 test (98.6469864698647%) started, 11 in queue, 30 running] Running Test mp_quick_relax ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/mp_quick_relax/command.sh Running Test hierarchical_clustering ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/hierarchical_clustering/command.sh Running Test features_scientific_benchmark ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/features_scientific_benchmark/command.sh Finished mp_quick_relax in 0 seconds [~ 805 test (99.0159901599016%) started, 8 in queue, 32 running] Finished features_scientific_benchmark in 0 seconds [~ 805 test (99.0159901599016%) started, 8 in queue, 31 running] Running Test features_postgres ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/features_postgres/command.sh Running Test extract_pdbs ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/extract_pdbs/command.sh Finished rna_score in 5 seconds [~ 807 test (99.2619926199262%) started, 6 in queue, 32 running] Finished features_postgres in 0 seconds [~ 807 test (99.2619926199262%) started, 6 in queue, 31 running] Running Test crossaln ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/crossaln/command.sh Running Test code_template_tests_unit ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/code_template_tests_unit/command.sh Finished mp_span_from_pdb in 2 seconds [~ 809 test (99.5079950799508%) started, 4 in queue, 32 running] Running Test code_template_tests_app ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/code_template_tests_app/command.sh Finished ld_converter in 3 seconds [~ 810 test (99.6309963099631%) started, 3 in queue, 32 running] Finished code_template_tests_unit in 0 seconds [~ 810 test (99.6309963099631%) started, 3 in queue, 31 running] Running Test central_class_modification ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/central_class_modification/command.sh Running Test Werror_check ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/Werror_check/command.sh Checking the status of the -Werror option in the Scons build settings: PASS Checking the status of the -Werror option in the CMake build settings: PASS Finished rna_suitename in 2 seconds [~ 812 test (99.8769987699877%) started, 1 in queue, 32 running] Finished loop_hash in 2 seconds [~ 812 test (99.8769987699877%) started, 1 in queue, 31 running] Finished central_class_modification in 0 seconds [~ 812 test (99.8769987699877%) started, 1 in queue, 30 running] Finished Werror_check in 0 seconds [~ 812 test (99.8769987699877%) started, 1 in queue, 29 running] Running Test RescoreSAXS ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/RescoreSAXS/command.sh Running Test HOW_TO_MAKE_TESTS ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/HOW_TO_MAKE_TESTS/command.sh Finished rna_add_WC_stats in 2 seconds [~ 813 test (100.0%) started, 0 in queue, 29 running] Finished combine_silent in 1 seconds [~ 813 test (100.0%) started, 0 in queue, 28 running] Finished RescoreSAXS in 0 seconds [~ 813 test (100.0%) started, 0 in queue, 27 running] Finished HOW_TO_MAKE_TESTS in 0 seconds [~ 813 test (100.0%) started, 0 in queue, 26 running] Finished DARC_electrostatics in 3 seconds [~ 813 test (100.0%) started, 0 in queue, 25 running] Finished ralford_dump_rotamers in 2 seconds [~ 813 test (100.0%) started, 0 in queue, 24 running] Finished fit_helixparams_a3b in 2 seconds [~ 813 test (100.0%) started, 0 in queue, 23 running] Finished code_template_tests_app in 0 seconds [~ 813 test (100.0%) started, 0 in queue, 22 running] Finished calculate_sasa in 2 seconds [~ 813 test (100.0%) started, 0 in queue, 21 running] Finished rna_cluster in 2 seconds [~ 813 test (100.0%) started, 0 in queue, 20 running] Finished fit_helixparams in 2 seconds [~ 813 test (100.0%) started, 0 in queue, 19 running] Finished extract_pdbs in 1 seconds [~ 813 test (100.0%) started, 0 in queue, 18 running] Finished r_rmsf in 2 seconds [~ 813 test (100.0%) started, 0 in queue, 17 running] Finished number_of_residuetypes in 2 seconds [~ 813 test (100.0%) started, 0 in queue, 16 running] Finished centroid_disulfide_scores in 4 seconds [~ 813 test (100.0%) started, 0 in queue, 15 running] Finished BuildPeptide in 2 seconds [~ 813 test (100.0%) started, 0 in queue, 14 running] Finished crossaln in 1 seconds [~ 813 test (100.0%) started, 0 in queue, 13 running] test_general test_abstract test_mover test_ws_energy_method test_1b_energy_method test_2b_energy_method test_task_operation test_features_reporter test_residue_selector test_residue_selector_in_core test_crosslinker_mover_helper test_util Encounter error while executing: ulimit -t 480 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/code_template_tests_src/command.sh *** Test code_template_tests_src did not run! Check your --mode flag and paths. [2024-11-11 13:54:00.895638] Finished code_template_tests_src in 3 seconds [~ 813 test (100.0%) started, 0 in queue, 12 running] Finished score_aln in 2 seconds [~ 813 test (100.0%) started, 0 in queue, 11 running] Finished hierarchical_clustering in 2 seconds [~ 813 test (100.0%) started, 0 in queue, 10 running] Finished InterfaceAnalyzer in 27 seconds [~ 813 test (100.0%) started, 0 in queue, 9 running] Finished rings in 4 seconds [~ 813 test (100.0%) started, 0 in queue, 8 running] Finished test_d_l_readin in 3 seconds [~ 813 test (100.0%) started, 0 in queue, 7 running] Finished CCD_loop_closure in 3 seconds [~ 813 test (100.0%) started, 0 in queue, 6 running] Finished features_database_schema in 5 seconds [~ 813 test (100.0%) started, 0 in queue, 5 running] Finished rosetta_scripts_info in 3 seconds [~ 813 test (100.0%) started, 0 in queue, 4 running] Finished make_exemplar in 5 seconds [~ 813 test (100.0%) started, 0 in queue, 3 running] Finished pna in 18 seconds [~ 813 test (100.0%) started, 0 in queue, 2 running] Finished non-canonical_connectivities in 5 seconds [~ 813 test (100.0%) started, 0 in queue, 1 running] Encounter error while executing: ulimit -t 960 && bash /Volumes/scratch/b3.w/rosetta/commits/rosetta/tests/integration/new/app_exception_handling/command.sh *** Test app_exception_handling did not run! Check your --mode flag and paths. [2024-11-11 13:54:58.422544] Finished app_exception_handling in 491 seconds [~ 813 test (100.0%) started, 0 in queue, 0 running] Skipping comparison/analysis phase because command line option "--skip-comparison" was specified... Missing new/runtimes.yaml ──────────────── 'takeshi' comparing commits:20606 mac.clang.python39.integration test_id=845890 vs. main:62138 previous_test_id=845069 ────────────────

Sub-Tests Results

mac.clang.python39.integration.app_exception_handling 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62138/app_exception_handling/log and /home/benchmark/working_dir/commits:20606/app_exception_handling/log differ Only in /home/benchmark/working_dir/commits:20606/app_exception_handling: .test_did_not_run.log Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62138/app_exception_handling/log /home/benchmark/working_dir/commits:20606/app_exception_handling/log 1a2 > Unhandled exceptions in application sim_cryo added by Mon Nov 11 13:54:12 EST 2024 Only in /home/benchmark/working_dir/commits:20606/app_exception_handling: .test_did_not_run.log Compare(...): Marking as "Script failed" due to presense of .test_did_not_run.log or .test_got_timeout_kill.log file!

mac.clang.python39.integration.blob_finder 「click to collapse/expand」

Brief Diff: diff: /home/benchmark/working_dir/main:62138/blob_finder: No such file or directory

mac.clang.python39.integration.code_template_tests_src 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62138/code_template_tests_src/.test_did_not_run.log and /home/benchmark/working_dir/commits:20606/code_template_tests_src/.test_did_not_run.log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62138/code_template_tests_src/.test_did_not_run.log /home/benchmark/working_dir/commits:20606/code_template_tests_src/.test_did_not_run.log 1c1 < *** Test code_template_tests_src did not run! Check your --mode flag and paths. [2024-10-28 13:46:44.787787] --- > *** Test code_template_tests_src did not run! Check your --mode flag and paths. [2024-11-11 13:54:00.895638] Compare(...): Marking as "Script failed" due to presense of .test_did_not_run.log or .test_got_timeout_kill.log file!

mac.clang.python39.integration.output_schema 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62138/output_schema/current_rosettascripts_schema.xsd and /home/benchmark/working_dir/commits:20606/output_schema/current_rosettascripts_schema.xsd differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62138/output_schema/current_rosettascripts_schema.xsd /home/benchmark/working_dir/commits:20606/output_schema/current_rosettascripts_schema.xsd 26019a26020,26034 > <xs:attribute name="skeleton_radius" type="real"> > <xs:annotation><xs:documentation xml:lang="en"> > Radius to search for EM density points for the ligand aligner. Default: 10 > </xs:documentation></xs:annotation> > </xs:attribute> > <xs:attribute name="method_for_radius" type="xs:string"> > <xs:annotation><xs:documentation xml:lang="en"> > Method to find radius for EM density erosion. Options are fixed, pocket, no_padding. Default: fixed > </xs:documentation></xs:annotation> > </xs:attribute> > <xs:attribute name="advanced_map_erosion" type="rosetta_bool"> > <xs:annotation><xs:documentation xml:lang="en"> > Run an advanced version of EM density map erosion for ligand alignment. Default: false > </xs:documentation></xs:annotation> > </xs:attribute> 26022a26038,26052 > </xs:documentation></xs:annotation> > </xs:attribute> > <xs:attribute name="altcrossover" type="rosetta_bool"> > <xs:annotation><xs:documentation xml:lang="en"> > Use alternate crossover method. Default: false > </xs:documentation></xs:annotation> > </xs:attribute> > <xs:attribute name="single_mutation" type="rosetta_bool"> > <xs:annotation><xs:documentation xml:lang="en"> > Allow only 1 torsion mutation. Default: false > </xs:documentation></xs:annotation> > </xs:attribute> > <xs:attribute name="local_resolution" type="real"> > <xs:annotation><xs:documentation xml:lang="en"> > local resolution used to estimate density correlation for ligand identification

mac.clang.python39.integration.sim_cryo 「click to collapse/expand」

Brief Diff: diff: /home/benchmark/working_dir/main:62138/sim_cryo: No such file or directory

All sub-tests

JSON output

{ "compared_with_test": { "full_name": "mac.clang.python39.integration", "name": "integration", "platform": { "compiler": "clang", "extras": [], "os": "mac", "python": "3.9" }, "platform_as_string": "mac.clang.python39", "revision": { "branch": "main", "revision_id": 62138 }, "state": "failed", "test_id": 845069 }, "summary": { "failed": 5, "failed_tests": [ "sim_cryo", "app_exception_handling", "code_template_tests_src", "output_schema", "blob_finder" ], "total": 813 }, "tests": { "AddConstraintsToCurrentConformationMover": { "log": "", "state": "passed" }, "AlignPDBInfoToSequences": { "log": "", "state": "passed" }, "AlterSpecDisruption": { "log": "", "state": "passed" }, "AnchorFinder": { "log": "", "state": "passed" }, "AnchoredDesign": { "log": "", "state": "passed" }, "AnchoredPDBCreator": { "log": "", "state": "passed" }, "BFactorSelector": { "log": "", "state": "passed" }, "BuildPeptide": { "log": "", "state": "passed" }, "CCD_loop_closure": { "log": "", "state": "passed" }, "CCS_PARCS": { "log": "", "state": "passed" }, "ConsensusLoopDesign": { "log": "", "state": "passed" }, "ContactMolecularSurface": { "log": "", "state": "passed" }, "DARC_electrostatics": { "log": "", "state": "passed" }, "DARC_make_ray_files": { "log": "", "state": "passed" }, "DARC_sampling_on_the_fly": { "log": "", "state": "passed" }, "DARC_shapeonly": { "log": "", "state": "passed" }, "DNA_methylation": { "log": "", "state": "passed" }, "DumpTrajectoryEnergy": { "log": "", "state": "passed" }, "DumpTrajectoryEnergy_packing": { "log": "", "state": "passed" }, "Enzrevert_xml": { "log": "", "state": "passed" }, "FavorSequenceProfileMover": { "log": "", "state": "passed" }, "FilterReportAsPoseExtraScoresMover": { "log": "", "state": "passed" }, "FlipChirality": { "log": "", "state": "passed" }, "FloppyTail": { "log": "", "state": "passed" }, "HDXEnergy": { "log": "", "state": "passed" }, "HOW_TO_MAKE_TESTS": { "log": "", "state": "passed" }, "HelixBendFilter": { "log": "", "state": "passed" }, "InterfaceAnalyzer": { "log": "", "state": "passed" }, "InterfaceAnalyzer_allscores": { "log": "", "state": "passed" }, "InterfaceAnalyzer_bothpack": { "log": "", "state": "passed" }, "InterfaceAnalyzer_ligand": { "log": "", "state": "passed" }, "InterfaceAnalyzer_metrics": { "log": "", "state": "passed" }, "InterfaceAnalyzer_prepack": { "log": "", "state": "passed" }, "InterfaceAnalyzer_resfile": { "log": "", "state": "passed" }, "InterfaceAnalyzer_tracer": { "log": "", "state": "passed" }, "InterfaceDdG": { "log": "", "state": "passed" }, "KIC_refine": { "log": "", "state": "passed" }, "KIC_vicinity": { "log": "", "state": "passed" }, "KIC_with_fragments": { "log": "", "state": "passed" }, "LayerDesign": { "log": "", "state": "passed" }, "LayerDesign_symm": { "log": "", "state": "passed" }, "LayerSelector": { "log": "", "state": "passed" }, "LoopAnalyzer": { "log": "", "state": "passed" }, "LoopLengthChange": { "log": "", "state": "passed" }, "ModifyVariantTypeMover": { "log": "", "state": "passed" }, "MutateResidue_selector": { "log": "", "state": "passed" }, "N-terminal_acetylation": { "log": "", "state": "passed" }, "OversaturatedHbondAcceptorFilter": { "log": "", "state": "passed" }, "PDB_diagnostic": { "log": "", "state": "passed" }, "PTMPrediction": { "log": "", "state": "passed" }, "PeptideCyclizeMover": { "log": "", "state": "passed" }, "PeptideStubMover_prependRepeat": { "log": "", "state": "passed" }, "PolarDesign2019": { "log": "", "state": "passed" }, "ProQ": { "log": "", "state": "passed" }, "RBOut": { "log": "", "state": "passed" }, "ReadResfile_with_selector": { "log": "", "state": "passed" }, "RescorePDDF": { "log": "", "state": "passed" }, "RescoreSAXS": { "log": "", "state": "passed" }, "ResidueDisorder": { "log": "", "state": "passed" }, "RunSimpleMetric_b_factor_test": { "log": "", "state": "passed" }, "SID_ERMS_prediction": { "log": "", "state": "passed" }, "SID_rescore": { "log": "", "state": "passed" }, "SSElementSelector": { "log": "", "state": "passed" }, "SecondaryStructureFilter": { "log": "", "state": "passed" }, "SnugDock": { "log": "", "state": "passed" }, "StrandCurvatureByLevels": { "log": "", "state": "passed" }, "StrandHelixGeometryFilter": { "log": "", "state": "passed" }, "ThreadingInputter": { "log": "", "state": "passed" }, "TryDisulfPermutations": { "log": "", "state": "passed" }, "UBQ_E2_thioester": { "log": "", "state": "passed" }, "UBQ_E2_thioester_extra_bodies": { "log": "", "state": "passed" }, "UBQ_E2_thioester_two_ubiquitins": { "log": "", "state": "passed" }, "UBQ_Gp_CYD-CYD": { "log": "", "state": "passed" }, "UBQ_Gp_LYX-Cterm": { "log": "", "state": "passed" }, "UnsatSelector": { "log": "", "state": "passed" }, "Werror_check": { "log": "", "state": "passed" }, "abinitio": { "log": "", "state": "passed" }, "abinitio_with_trRosetta": { "log": "", "state": "passed" }, "add_constraints_to_current_conformation": { "log": "", "state": "passed" }, "add_helix_sequence_constraints": { "log": "", "state": "passed" }, "add_helix_sequence_constraints_advanced_setup": { "log": "", "state": "passed" }, "add_job_pair_data": { "log": "", "state": "passed" }, "ambiguous_nmr_distance_constraint": { "log": "", "state": "passed" }, "angle_recovery_stats": { "log": "", "state": "passed" }, "antibody_H3": { "log": "", "state": "passed" }, "antibody_H3_camelid": { "log": "", "state": "passed" }, "antibody_cc": { "log": "", "state": "passed" }, "antibody_designer": { "log": "", "state": "passed" }, "antibody_designer_camelid": { "log": "", "state": "passed" }, "antibody_designer_xml": { "log": "", "state": "passed" }, "antibody_graft": { "log": "", "state": "passed" }, "antibody_numbering_converter": { "log": "", "state": "passed" }, "app_exception_handling": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62138/app_exception_handling/log and /home/benchmark/working_dir/commits:20606/app_exception_handling/log differ\r\nOnly in /home/benchmark/working_dir/commits:20606/app_exception_handling: .test_did_not_run.log\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62138/app_exception_handling/log /home/benchmark/working_dir/commits:20606/app_exception_handling/log\r\n1a2\r\n> Unhandled exceptions in application sim_cryo added by Mon Nov 11 13:54:12 EST 2024\r\nOnly in /home/benchmark/working_dir/commits:20606/app_exception_handling: .test_did_not_run.log\r\n\nCompare(...): Marking as \"Script failed\" due to presense of .test_did_not_run.log or .test_got_timeout_kill.log file!\n", "state": "script failed" }, "assemble_domains_jd2": { "log": "", "state": "passed" }, "auto-drrafter_final_results": { "log": "", "state": "passed" }, "auto-drrafter_setup_run_R1": { "log": "", "state": "passed" }, "auto-drrafter_setup_run_R2": { "log": "", "state": "passed" }, "auto-drrafter_setup_run_R3": { "log": "", "state": "passed" }, "autoNOE_rosetta": { "log": "", "state": "passed" }, "autosetup_metals_centroid": { "log": "", "state": "passed" }, "backbonegridsampler": { "log": "", "state": "passed" }, "backbonegridsampler_multiresidue": { "log": "", "state": "passed" }, "backbonegridsampler_nstruct_mode": { "log": "", "state": "passed" }, "backrub": { "log": "", "state": "passed" }, "backrub_interface_ddG": { "log": "", "state": "passed" }, "backrub_pilot": { "log": "", "state": "passed" }, "balancedKIC": { "log": "", "state": "passed" }, "basic_gcn_tensorflow_test": { "log": "", "state": "passed" }, "batch_relax": { "log": "", "state": "passed" }, "bcl_fragment_mutate": { "log": "", "state": "passed" }, "beta_strand_homodimer": { "log": "", "state": "passed" }, "bin_initialization": { "log": "", "state": "passed" }, "bin_perturbation": { "log": "", "state": "passed" }, "binselector": { "log": "", "state": "passed" }, "binselector_probins": { "log": "", "state": "passed" }, "blob_finder": { "log": "Brief Diff:\ndiff: /home/benchmark/working_dir/main:62138/blob_finder: No such file or directory\r\n", "state": "failed" }, "bridge_chains": { "log": "", "state": "passed" }, "broker": { "log": "", "state": "passed" }, "broker_membrane": { "log": "", "state": "passed" }, "bundlegridsampler": { "log": "", "state": "passed" }, "bundlegridsampler_composition_energy": { "log": "", "state": "passed" }, "bundlegridsampler_composition_energy_fract_range": { "log": "", "state": "passed" }, "bundlegridsampler_copy_pitch": { "log": "", "state": "passed" }, "bundlegridsampler_design": { "log": "", "state": "passed" }, "bundlegridsampler_design_nstruct_mode": { "log": "", "state": "passed" }, "bundlegridsampler_epsilon": { "log": "", "state": "passed" }, "bundlegridsampler_multirepeat": { "log": "", "state": "passed" }, "bundlegridsampler_z0_offset": { "log": "", "state": "passed" }, "bundlegridsampler_z1_offset": { "log": "", "state": "passed" }, "bundlereporter_filter": { "log": "", "state": "passed" }, "burial_measure_centroid": { "log": "", "state": "passed" }, "buried_area_filter": { "log": "", "state": "passed" }, "buried_unsat_kinemage": { "log": "", "state": "passed" }, "buried_unsat_voids_hbnet_design": { "log": "", "state": "passed" }, "buried_unsat_voids_hbnet_design_symm": { "log": "", "state": "passed" }, "c-term_conjugation": { "log": "", "state": "passed" }, "calculate_sasa": { "log": "", "state": "passed" }, "carbohydrates": { "log": "", "state": "passed" }, "cart_min_glycans": { "log": "", "state": "passed" }, "cartesianddg": { "log": "", "state": "passed" }, "case_sensitive_filenames": { "log": "", "state": "passed" }, "ccd_ends_graft_mover_rs": { "log": "", "state": "passed" }, "central_class_modification": { "log": "", "state": "passed" }, "centroid_disulfide_scores": { "log": "", "state": "passed" }, "centroid_from_fullatom": { "log": "", "state": "passed" }, "cl_complex_rescore": { "log": "", "state": "passed" }, "classic_relax_1a19": { "log": "", "state": "passed" }, "cleanAlignment": { "log": "", "state": "passed" }, "cluster": { "log": "", "state": "passed" }, "cluster_alns": { "log": "", "state": "passed" }, "cluster_calibur": { "log": "", "state": "passed" }, "cluster_filter": { "log": "", "state": "passed" }, "cmaes_minimizer": { "log": "", "state": "passed" }, "coarse_rna_scoring": { "log": "", "state": "passed" }, "code_template_tests_app": { "log": "", "state": "passed" }, "code_template_tests_citations": { "log": "", "state": "passed" }, "code_template_tests_src": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62138/code_template_tests_src/.test_did_not_run.log and /home/benchmark/working_dir/commits:20606/code_template_tests_src/.test_did_not_run.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62138/code_template_tests_src/.test_did_not_run.log 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"perturb_helical_bundle_z_offset": { "log": "", "state": "passed" }, "phiselector": { "log": "", "state": "passed" }, "phosphonate": { "log": "", "state": "passed" }, "phosphorylation": { "log": "", "state": "passed" }, "place_simultaneously": { "log": "", "state": "passed" }, "pmut_scan": { "log": "", "state": "passed" }, "pna": { "log": "", "state": "passed" }, "pna_base_pairs": { "log": "", "state": "passed" }, "pocket_measure": { "log": "", "state": "passed" }, "pocket_relax": { "log": "", "state": "passed" }, "pocket_suggest_targets": { "log": "", "state": "passed" }, "polyaramid_test_trivial": { "log": "", "state": "passed" }, "pose_sewing": { "log": "", "state": "passed" }, "posttranslationalmod_io": { "log": "", "state": "passed" }, "ppi_v3_suiteA": { "log": "", "state": "passed" }, "ppi_v3_suiteB": { "log": "", "state": "passed" }, "ppi_v3_suiteC": { "log": "", "state": "passed" }, "ppi_v3_suiteD": { "log": "", "state": "passed" }, "ppi_v3_suiteE": { "log": "", "state": "passed" }, "ppi_v3_suiteF": { "log": "", "state": "passed" }, "ppi_v3_suiteG": { "log": "", "state": "passed" }, "ppk": { "log": "", "state": "passed" }, "proteinMPNN_model_perplexity": { "log": "", "state": "passed" }, "protocol_metric": { "log": "", "state": "passed" }, "pwsho": { "log": "", "state": "passed" }, "pymol_cif": { "log": "", "state": "passed" }, "r_pdb2top": { "log": "", "state": "passed" }, "r_rmsf": { "log": "", "state": "passed" }, "ralford_dump_rotamers": { "log": "", "state": "passed" }, "rama_mutation_selector": { "log": "", "state": "passed" }, "range_relax_w_cst": { "log": "", "state": "passed" }, "rb_recces": { "log": "", "state": "passed" }, "rdkit_metrics": { "log": "", "state": "passed" }, "read_polymeric_components": { "log": "", "state": "passed" }, "readin_dna_rna_protein": { "log": "", "state": "passed" }, "real_virt_mover": { "log": "", "state": "passed" }, "recces_turner": { "log": "", "state": "passed" }, "recon_design": { "log": "", "state": "passed" }, "recon_design_mpi": { "log": "", "state": "passed" }, "referencepose_mutateresidue": { "log": "", "state": "passed" }, "relax_w_allatom_cst": { "log": "", "state": "passed" }, "remodel": { "log": "", "state": "passed" }, "remodel_disulfides": { "log": "", "state": "passed" }, "remodel_disulfides_rosettascripts": { "log": "", "state": "passed" }, "remodel_helical_repeat": { "log": "", "state": "passed" }, "repack_with_elec_dens": { "log": "", "state": "passed" }, "repeat_propagate": { "log": "", "state": "passed" }, "repeat_propagate_v2": { "log": "", "state": "passed" }, "repeat_propagate_v3": { "log": "", "state": "passed" }, "repeat_relax": { "log": "", "state": "passed" }, "replica_docking": { "log": "", "state": "passed" }, "report_hbonds_for_plugin": { "log": "", "state": "passed" }, "res_lipo_ref2015_memb": { "log": "", "state": "passed" }, "residue_energy_breakdown": { "log": "", "state": "passed" }, "resource_database_locator": { "log": "", "state": "passed" }, "restype_converter": { "log": "", "state": "passed" }, "rings": { "log": "", "state": "passed" }, "rna_add_WC_stats": { "log": "", "state": "passed" }, "rna_assemble": { "log": "", "state": "passed" }, "rna_cluster": { "log": "", "state": "passed" }, "rna_denovo": { "log": "", "state": "passed" }, "rna_denovo_RNP_low_res": { "log": "", "state": "passed" }, "rna_denovo_RNP_refine_native": { "log": "", "state": "passed" }, "rna_denovo_base_pair_constraints": { "log": "", "state": "passed" }, "rna_denovo_base_pair_setup": { "log": "", "state": "passed" }, "rna_denovo_bps": { "log": "", "state": "passed" }, "rna_denovo_bps_fixed_ends": { "log": "", "state": "passed" }, "rna_denovo_bps_helix_ends": { "log": "", "state": "passed" }, "rna_denovo_dna_bridge": { "log": "", "state": "passed" }, "rna_denovo_fragment_homology_exclusion": { "log": "", "state": "passed" }, "rna_denovo_grid_vdw": { "log": "", "state": "passed" }, "rna_denovo_lariat": { "log": "", "state": "passed" }, "rna_denovo_new_FT_2in_dens": { "log": "", "state": "passed" }, "rna_denovo_new_FT_5P_j12_leadzyme": { "log": "", "state": "passed" }, "rna_denovo_new_FT_RNP_2prot_dens": { "log": "", "state": "passed" }, "rna_denovo_new_FT_rna_two_chains": { "log": "", "state": "passed" }, "rna_denovo_new_libs": { "log": "", "state": "passed" }, "rna_denovo_symm_hack": { "log": "", "state": "passed" }, "rna_design": { "log": "", "state": "passed" }, "rna_farfar_block_stack": { "log": "", "state": "passed" }, "rna_farfar_noncanonical_hairpin": { "log": "", "state": "passed" }, "rna_farfar_syn_chi_res": { "log": "", "state": "passed" }, "rna_helix": { "log": "", "state": "passed" }, "rna_minimize": { "log": "", "state": "passed" }, "rna_minimize_6D_loop_close": { "log": "", "state": "passed" }, "rna_motif": { "log": "", "state": "passed" }, "rna_predict_chem_map": { "log": "", "state": "passed" }, "rna_puzzle11_H2H3H4_run3_connectU40": { "log": "", "state": "passed" }, "rna_puzzle12_P5P6P7_DMS": { "log": "", "state": "passed" }, "rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation": { "log": "", "state": "passed" }, "rna_puzzle5_p2_GAAA_mini": { "log": "", "state": "passed" }, "rna_puzzle6_U75G76A77_on_thread1": { "log": "", "state": "passed" }, "rna_puzzle6_j67_into_p6p7rigidbody_thread1": { "log": "", "state": "passed" }, "rna_ribosome_tether": { "log": "", "state": "passed" }, "rna_score": { "log": "", "state": "passed" }, "rna_screen_phosphates": { "log": "", "state": "passed" }, "rna_suitename": { "log": "", "state": "passed" }, "rnp_ddg_calc_mut": { "log": "", "state": "passed" }, "rnp_ddg_calc_setup": { "log": "", "state": "passed" }, "rnp_ddg_calc_wt": { "log": "", "state": "passed" }, "rnp_ddg_finalize": { "log": "", "state": "passed" }, "rnp_ddg_relax_command_1": { "log": "", "state": "passed" }, "rnp_ddg_relax_command_2": { "log": "", "state": "passed" }, "rnp_ddg_relax_finalize": { "log": "", "state": "passed" }, "rnp_ddg_relax_setup": { "log": "", "state": "passed" }, "rollmover": { "log": "", "state": "passed" }, "rosetta_scripts_hbond_options": { "log": "", "state": "passed" }, "rosetta_scripts_include": { "log": "", "state": "passed" }, "rosetta_scripts_info": { "log": "", "state": "passed" }, "rosetta_scripts_jd3": { "log": "", "state": "passed" }, "rosetta_scripts_loops": { "log": "", "state": "passed" }, "rosetta_scripts_setup": { "log": "", "state": "passed" }, "rosie_ligand_docking": { "log": "", "state": "passed" }, "rotamer_probability": { "log": "", "state": "passed" }, "rotamer_recovery": { "log": "", "state": "passed" }, "rotamer_recovery_compare_two_structures": { "log": "", "state": "passed" }, "rs_flexbbmoves": { "log": "", "state": "passed" }, "rs_loophash": { "log": "", "state": "passed" }, "sample_seq_from_probs": { "log": "", "state": "passed" }, "sasa_metric_options": { "log": "", "state": "passed" }, "score12_docking": { "log": "", "state": "passed" }, "score_aln": { "log": "", "state": "passed" }, "score_jd2": { "log": "", "state": "passed" }, "score_only_silence": { "log": "", "state": "passed" }, "sdf_reader": { "log": "", "state": "passed" }, "secondary_structure_output": { "log": "", "state": "passed" }, "seed_ensemble_JD2_JI": { "log": "", "state": "passed" }, "select_best_unique_ligand_poses": { "log": "", "state": "passed" }, "selected_residue_count_metric": { "log": "", "state": "passed" }, "sequence_profile_constraints": { "log": "", "state": "passed" }, "sequence_recovery": { "log": "", "state": "passed" }, "sequence_tolerance": { "log": "", "state": "passed" }, "set_torsion": { "log": "", "state": "passed" }, "shobuns": { "log": "", "state": "passed" }, "silent2frag": { "log": "", "state": "passed" }, "sim_cryo": { "log": "Brief Diff:\ndiff: /home/benchmark/working_dir/main:62138/sim_cryo: No such file or directory\r\n", "state": "failed" }, "simple_cycpep_predict": { "log": "", "state": "passed" }, "simple_cycpep_predict_1_4_bbmb": { "log": "", "state": "passed" }, "simple_cycpep_predict_angle": { "log": "", "state": "passed" }, "simple_cycpep_predict_anglelength": { "log": "", "state": "passed" }, "simple_cycpep_predict_beta_thioether_lariat": { "log": "", "state": "passed" }, "simple_cycpep_predict_bondangle_bondlength": { "log": "", "state": "passed" }, "simple_cycpep_predict_cartesian": { "log": "", "state": "passed" }, "simple_cycpep_predict_cispro": { "log": "", "state": "passed" }, "simple_cycpep_predict_cterm_isopeptide_lariat": { "log": "", "state": "passed" }, "simple_cycpep_predict_cterm_isopeptide_lariat_tailless": { "log": "", "state": "passed" }, "simple_cycpep_predict_design": { "log": "", "state": "passed" }, "simple_cycpep_predict_lanthionine": { "log": "", "state": "passed" }, "simple_cycpep_predict_nmethyl": { "log": "", "state": "passed" }, "simple_cycpep_predict_nterm_isopeptide_lariat": { "log": "", "state": "passed" }, "simple_cycpep_predict_nterm_isopeptide_lariat_tailless": { "log": "", "state": "passed" }, "simple_cycpep_predict_octahedral_metal": { "log": "", "state": "passed" }, "simple_cycpep_predict_peptoid": { "log": "", "state": "passed" }, "simple_cycpep_predict_setting": { "log": "", "state": "passed" }, "simple_cycpep_predict_sidechain_isopeptide": { "log": "", "state": "passed" }, "simple_cycpep_predict_sidechain_isopeptide_reverse": { "log": "", "state": "passed" }, "simple_cycpep_predict_square_planar_metal": { "log": "", "state": "passed" }, "simple_cycpep_predict_square_pyramidal_metal": { "log": "", "state": "passed" }, "simple_cycpep_predict_symm_gly": { "log": "", "state": "passed" }, "simple_cycpep_predict_symmetric_sampling": { "log": "", "state": "passed" }, "simple_cycpep_predict_tbmb": { "log": "", "state": "passed" }, "simple_cycpep_predict_terminal_disulfide": { "log": "", "state": "passed" }, "simple_cycpep_predict_terminal_disulfide_internal_permutations": { "log": "", "state": "passed" }, "simple_cycpep_predict_terminal_disulfide_tails": { "log": "", "state": "passed" }, "simple_cycpep_predict_terminal_disulfide_tails_2": { "log": "", "state": "passed" }, "simple_cycpep_predict_tetrahedral_metal": { "log": "", "state": "passed" }, "simple_cycpep_predict_tetrahedral_metal_asp": { "log": "", "state": "passed" }, "simple_cycpep_predict_thioether_cis_sampling": { "log": "", "state": "passed" }, "simple_cycpep_predict_thioether_lariat": { "log": "", "state": "passed" }, "simple_cycpep_predict_tma": { "log": "", "state": "passed" }, "simple_cycpep_predict_trigonal_planar_metal": { "log": "", "state": "passed" }, "simple_cycpep_predict_trigonal_pyramidal_metal": { "log": "", "state": "passed" }, "simple_dna_test": { "log": "", "state": "passed" }, "simple_glycosylation": { "log": "", "state": "passed" }, "simple_glycosylation_alternate_AAs": { "log": "", "state": "passed" }, "simple_grafting_movers": { "log": "", "state": "passed" }, "simple_hbondstoatom": { "log": "", "state": "passed" }, "simple_metric_cache": { "log": "", "state": "passed" }, "simple_metric_features": { "log": "", "state": "passed" }, "simple_metric_filter": { "log": "", "state": "passed" }, "simple_metrics": { "log": "", "state": "passed" }, "simple_metrics_b_factor": { "log": "", "state": "passed" }, "simple_metrics_in_protocols": { "log": "", "state": "passed" }, "simple_metrics_per_residue": { "log": "", "state": "passed" }, "site_constraint": { "log": "", "state": "passed" }, "small_molecule_lattice_dock": { "log": "", "state": "passed" }, "smallmover_resselector": { "log": "", "state": "passed" }, "smart_annealer": { "log": "", "state": "passed" }, "splice_in_4loops_longer": { "log": "", "state": "passed" }, "splice_in_4loops_shorter": { "log": "", "state": "passed" }, "splice_out_H1_H2_longer": { "log": "", "state": "passed" }, "splice_out_H1_H2_same": { "log": "", "state": "passed" }, "splice_out_H1_H2_shorter": { "log": "", "state": "passed" }, "splice_out_H3_longer": { "log": "", "state": "passed" }, "splice_out_H3_same": { "log": "", "state": "passed" }, "splice_out_H3_shorter": { "log": "", "state": "passed" }, "splice_out_L1_L2_longer": { "log": "", "state": "passed" }, "splice_out_L1_L2_same": { "log": "", "state": "passed" }, "splice_out_L1_L2_shorter": { "log": "", "state": "passed" }, "splice_out_L3_longer": { "log": "", "state": "passed" }, "splice_out_L3_same": { "log": "", "state": "passed" }, "splice_out_L3_shorter": { "log": "", "state": "passed" }, "startfrom_file": { "log": "", "state": "passed" }, "stepwise_lores": { "log": "", "state": "passed" }, "stored_residue_subset": { "log": "", "state": "passed" }, "struc_set_fragment_picker": { "log": "", "state": "passed" }, "super_aln": { "log": "", "state": "passed" }, "supercharge": { "log": "", "state": "passed" }, "surface_docking": { "log": "", "state": "passed" }, "swa_protein_CCDclose": { "log": "", "state": "passed" }, "swa_protein_build_at_Cterminus": { "log": "", "state": "passed" }, "swa_protein_build_at_Nterminus": { "log": "", "state": "passed" }, "swa_protein_cluster": { "log": "", "state": "passed" }, "swa_protein_combine_loops": { "log": "", "state": "passed" }, "swa_protein_loop_sampler": { "log": "", "state": "passed" }, "swa_protein_prepack": { "log": "", "state": "passed" }, "swa_rna_erraser": { "log": "", "state": "passed" }, "swa_rna_gagu_01_append": { "log": "", "state": "passed" }, "swa_rna_gagu_02_prepend": { "log": "", "state": "passed" }, "swa_rna_gagu_03_append_to_silent": { "log": "", "state": "passed" }, "swa_rna_gagu_04_clustering": { "log": "", "state": "passed" }, "swa_rna_gagu_05_prepend_to_5primeterminus": { "log": "", "state": "passed" }, "swa_rna_gagu_06_append_to_3primeterminus": { "log": "", "state": "passed" }, "swa_rna_gagu_07_prepend_dinucleotide": { "log": "", "state": "passed" }, "swa_rna_gagu_08_append_dinucleotide": { "log": "", "state": "passed" }, "swa_rna_gagu_09_sample_virtual_ribose": { "log": "", "state": "passed" }, "swa_rna_gagu_10_prepend_and_ccd_close": { "log": "", "state": "passed" }, "swa_rna_gagu_11_append_and_ccd_close": { "log": "", "state": "passed" }, "swa_rna_gagu_12_helix_addition": { "log": "", "state": "passed" }, "swa_rna_gagu_13_chunk_combination_and_closure": { "log": "", "state": "passed" }, "swa_rna_gagu_14_combine_long_loop_filtering": { "log": "", "state": "passed" }, "swa_rna_gagu_15_combine_long_loop_sampling": { "log": "", "state": "passed" }, "swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide": { "log": "", "state": "passed" }, "swa_rna_gagu_17_append_floating_base": { "log": "", "state": "passed" }, "swa_rna_gagu_18_rebuild_bulge": { "log": "", "state": "passed" }, "swa_rna_gagu_19_prepend_floating_base_by_jump": { "log": "", "state": "passed" }, "swa_rna_gagu_20_append_floating_base_by_jump": { "log": "", "state": "passed" }, "swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump": { "log": "", "state": "passed" }, "swa_rna_gagu_22_prepend_and_kic_close": { "log": "", "state": "passed" }, "swa_rna_gagu_23_append_and_kic_close": { "log": "", "state": "passed" }, "swa_rna_loop_clusterer": { "log": "", "state": "passed" }, "swa_rna_loop_sampler": { "log": "", "state": "passed" }, "sweep_respair_energies": { "log": "", "state": "passed" }, "swm_add_rosettascripts": { "log": "", "state": "passed" }, "swm_beta_peptide_loop": { "log": "", "state": "passed" }, "swm_build_full_model": { "log": "", "state": "passed" }, "swm_dna_bridge": { "log": "", "state": "passed" }, "swm_dna_loop": { "log": "", "state": "passed" }, "swm_general_polymer_sampler": { "log": "", "state": "passed" }, "swm_l_rna": { "log": "", "state": "passed" }, "swm_protein_CCDmove": { "log": "", "state": "passed" }, "swm_protein_from_scratch": { "log": "", "state": "passed" }, "swm_protein_loop_sampler": { "log": "", "state": "passed" }, "swm_protein_move_inside_coiledcoil_by_bond": { "log": "", "state": "passed" }, "swm_protein_move_inside_helix_by_bond": { "log": "", "state": "passed" }, "swm_protein_preminimize": { "log": "", "state": "passed" }, "swm_rna_base_pair_constraints": { "log": "", "state": "passed" }, "swm_rna_checkpoint_partition": { "log": "", "state": "passed" }, "swm_rna_fourwayjunction": { "log": "", "state": "passed" }, "swm_rna_loop_design": { "log": "", "state": "passed" }, "swm_rna_move_align_dock": { "log": "", "state": "passed" }, "swm_rna_move_inside_helix_by_bond": { "log": "", "state": "passed" }, "swm_rna_move_inside_helix_by_jump": { "log": "", "state": "passed" }, "swm_rna_move_two_strands": { "log": "", "state": "passed" }, "swm_rna_nickedhelix": { "log": "", "state": "passed" }, "swm_rna_protonated_adenosine": { "log": "", "state": "passed" }, "swm_rna_singleloop": { "log": "", "state": "passed" }, "swm_rna_srl_triplet": { "log": "", "state": "passed" }, "symm_disulfidize": { "log": "", "state": "passed" }, "symm_rotamer_boltzmann": { "log": "", "state": "passed" }, "symmetric_cycpep_align_and_symmetrize": { "log": "", "state": "passed" }, "symmetric_docking": { "log": "", "state": "passed" }, "symmetrical_residue_selector": { "log": "", "state": "passed" }, "symmetry_data_resource": { "log": "", "state": "passed" }, "symmetry_multicomponent": { "log": "", "state": "passed" }, "target_clash": { "log": "", "state": "passed" }, "task_selector": { "log": "", "state": "passed" }, "tcrmodel": { "log": "", "state": "passed" }, "template_features": { "log": "", "state": "passed" }, "tensorflow_connection_test": { "log": "", "state": "passed" }, "tensorflow_manager": { "log": "", "state": "passed" }, "tensorflow_simple_model_load_and_evaluate": { "log": "", "state": "passed" }, "test1_benchmark": { "log": "", "state": "passed" }, "test_computed_saxs_spectrum": { "log": "", "state": "passed" }, "test_d_l_readin": { "log": "", "state": "passed" }, "test_degreaser": { "log": "", "state": "passed" }, "test_energy_method_options": { "log": "", "state": "passed" }, "test_idealize": { "log": "", "state": "passed" }, "test_rosetta_thread_manager_advanced_API": { "log": "", "state": "passed" }, "test_rosetta_thread_manager_basic_API": { "log": "", "state": "passed" }, "thermal_sampler": { "log": "", "state": "passed" }, "thread_local_tracers_check": { "log": "", "state": "passed" }, "threefold_symm_peptide_design": { "log": "", "state": "passed" }, "threefoldlinkermover_tbmb": { "log": "", "state": "passed" }, "threefoldlinkermover_tbmb_symmetric": { "log": "", "state": "passed" }, "tna_base_pairs": { "log": "", "state": "passed" }, "torsion_restricted_sampling": { "log": "", "state": "passed" }, "trRosetta": { "log": "", "state": "passed" }, "trRosettaConstraintGenerator": { "log": "", "state": "passed" }, "trRosettaConstraintGenerator_rosettascripts": { "log": "", "state": "passed" }, "trRosettaProtocolMover": { "log": "", "state": "passed" }, "trRosettaProtocolMover_rosettascripts": { "log": "", "state": "passed" }, "trRosettaProtocolMover_rosettascripts_diskwrite": { "log": "", "state": "passed" }, "trRosettaProtocolMover_rosettascripts_diskwrite_only": { "log": "", "state": "passed" }, "trRosetta_test_predict": { "log": "", "state": "passed" }, "trRosetta_test_predict_ubiquitin": { "log": "", "state": "passed" }, "trRosetta_test_predict_ubiquitin_cst_file_write": { "log": "", "state": "passed" }, "trRosetta_test_predict_ubiquitin_cst_file_write_only": { "log": "", "state": "passed" }, "trRosetta_test_predict_ubiquitin_init_by_bins": { "log": "", "state": "passed" }, "unfolded_state_energy_calc": { "log": "", "state": "passed" }, "validate_database": { "log": "", "state": "passed" }, "vancomycin": { "log": "", "state": "passed" }, "vip": { "log": "", "state": "passed" }, "voids_penalty_energy_design": { "log": "", "state": "passed" }, "voids_penalty_energy_design_symmetry": { "log": "", "state": "passed" }, "write_mol_file": { "log": "", "state": "passed" }, "zinc_heterodimer": { "log": "", "state": "passed" }, "zinc_homodimer_design": { "log": "", "state": "passed" }, "zinc_homodimer_setup": { "log": "", "state": "passed" } } }

integration test suite description

integration test suite

(plain)

debug

release_debug

release_debug_with_symbols

mpi

pytorch

tensorflow

thread

bcl