ERROR: benchmark.py script terminated with non-zero exit-code, execution log:
Loading test from: tests/release.py, suite+test: 'release.PyRosetta.conda.Release', test: 'PyRosetta.conda.Release'
Found test suite description in file: 'tests/release.md'
Running PyRosetta conda release test: at working_dir='/Volumes/scratch/w/T/commits-20580.844522.m1.clang.cxx11thread.serialization.python313.release.PyRosetta.conda.Release.0' with rosetta_dir=/Volumes/scratch/w/rosetta/commits/rosetta, platform={'compiler': 'clang', 'extras': ['cxx11thread', 'serialization'], 'os': 'm1', 'python': '3.13'}, jobs=4, memory=16GB, hpc_driver=None...
Install for MiniConda is detected, skipping installation procedure...
Updating conda base...
unset __PYVENV_LAUNCHER__ && unset PYTHONHOME && unset PYTHONPATH && . /Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/bin/activate && conda update --all --yes
Retrieving notices: ...working... done
Collecting package metadata (current_repodata.json): \ | / - \ | / - done
Solving environment: | / - \ | / - done
==> WARNING: A newer version of conda exists. <==
current version: 23.5.2
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c defaults conda
Or to minimize the number of packages updated during conda update use
conda install conda=24.9.2
# All requested packages already installed.
Setting up Conda for Python-3.13 virtual environment...
cd /Volumes/scratch/w/T/commits-20580.844522.m1.clang.cxx11thread.serialization.python313.release.PyRosetta.conda.Release.0 && unset __PYVENV_LAUNCHER__ && unset PYTHONHOME && unset PYTHONPATH && . /Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/bin/activate && ( conda create --quiet --yes --prefix /Volumes/scratch/w/T/commits-20580.844522.m1.clang.cxx11thread.serialization.python313.release.PyRosetta.conda.Release.0/.conda-python-3.13 python=3.13 || ( conda clean --yes && conda create --quiet --yes --prefix /Volumes/scratch/w/T/commits-20580.844522.m1.clang.cxx11thread.serialization.python313.release.PyRosetta.conda.Release.0/.conda-python-3.13 python=3.13 ) )
Collecting package metadata (current_repodata.json): ...working... done
...truncated...
Output in format: Requested package -> Available versions
Package python conflicts for:
python[version='>=3.13,<3.14.0a0']
numpy[version='>=1.20.2'] -> python[version='>=3.10,<3.11.0a0|>=3.12,<3.13.0a0|>=3.11,<3.12.0a0|>=3.9,<3.10.0a0|>=3.8,<3.9.0a0']
Package zlib conflicts for:
zlib[version='>=1.2.13,<1.3.0a0']
numpy[version='>=1.20.2'] -> python[version='>=3.10,<3.11.0a0'] -> zlib[version='>=1.2.11,<1.3.0a0|>=1.2.12,<1.3.0a0|>=1.2.13,<1.3.0a0']
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda/exception_handler.py", line 16, in __call__
return func(*args, **kwargs)
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda/cli/main.py", line 84, in main_subshell
exit_code = do_call(args, p)
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda/cli/conda_argparse.py", line 118, in do_call
return args.plugin_subcommand.action(sys.argv[2:])
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda_build/plugin.py", line 17, in build
return execute(args)
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda_build/cli/main_build.py", line 581, in execute
api.build(
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda_build/api.py", line 250, in build
return build_tree(
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda_build/build.py", line 3762, in build_tree
packages_from_this = build(
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda_build/build.py", line 2537, in build
create_build_envs(top_level_pkg, notest)
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda_build/build.py", line 2373, in create_build_envs
raise e
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda_build/build.py", line 2344, in create_build_envs
environ.get_package_records(
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda_build/environ.py", line 969, in get_install_actions
raise DependencyNeedsBuildingError(exc, subdir=subdir)
conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform osx-arm64: {"zlib[version='>=1.2.11,<1.3.0a0|>=1.2.12,<1.3.0a0|>=1.2.13,<1.3.0a0']", "python[version='>=3.10,<3.11.0a0|>=3.12,<3.13.0a0|>=3.11,<3.12.0a0|>=3.9,<3.10.0a0|>=3.8,<3.9.0a0']"}
`$ /Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/bin/conda build --no-locking --quiet /Volumes/scratch/w/T/commits-20580.844522.m1.clang.cxx11thread.serialization.python313.release.PyRosetta.conda.Release.0/recipe --output-folder /Volumes/scratch/w/T/commits-20580.844522.m1.clang.cxx11thread.serialization.python313.release.PyRosetta.conda.Release.0/conda-release`
environment variables:
CIO_TEST=<not set>
CONDA_ALLOW_SOFTLINKS=false
CONDA_DEFAULT_ENV=base
CONDA_EXE=/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/bin/conda
CONDA_PREFIX=/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda
CONDA_PROMPT_MODIFIER=(base)
CONDA_PYTHON_EXE=/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/bin/python
CONDA_ROOT=/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda
CONDA_SHLVL=1
CPATH=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include
CURL_CA_BUNDLE=<not set>
LD_PRELOAD=<not set>
PATH=/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/bin:/Volumes/scratch/w/pr
efix/m1/yoji-1/m1/conda/condabin:/Users/benchmark/scratch/prefix/b3.ba
ck-end/bin:/Users/benchmark/prefix/local/bin:/Users/benchmark/prefix/m
acports/bin:/usr/local/bin:/usr/sbin:/Library/Frameworks/Python.framew
ork/Versions/3.9/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Use
rs/benchmark/prefix/local/bin:/Users/benchmark/prefix/macports/bin
REQUESTS_CA_BUNDLE=<not set>
SSL_CERT_FILE=<not set>
active environment : base
active env location : /Volumes/scratch/w/prefix/m1/yoji-1/m1/conda
shell level : 1
user config file : /Users/benchmark/.condarc
populated config files :
conda version : 23.5.2
conda-build version : 24.3.0
python version : 3.8.20.final.0
virtual packages : __archspec=1=arm64
__osx=12.7=0
__unix=0=0
base environment : /Volumes/scratch/w/prefix/m1/yoji-1/m1/conda (writable)
conda av data dir : /Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/etc/conda
conda av metadata url : None
channel URLs : https://repo.anaconda.com/pkgs/main/osx-arm64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/osx-arm64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/pkgs
/Users/benchmark/.conda/pkgs
envs directories : /Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/envs
/Users/benchmark/.conda/envs
platform : osx-arm64
user-agent : conda/23.5.2 requests/2.32.3 CPython/3.8.20 Darwin/21.6.0 OSX/12.7 aau/0.4.4 c/. s/. e/.
UID:GID : 2456:20
netrc file : /Users/benchmark/.netrc
offline mode : False
An unexpected error has occurred. Conda has prepared the above report.
If submitted, this report will be used by core maintainers to improve
future releases of conda.
Would you like conda to send this report to the core maintainers? [y/N]:
Timeout reached. No report sent.
Traceback (most recent call last):
File "/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/lib/python3.9/shutil.py", line 806, in move
os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/Volumes/scratch/w/T/commits-20580.844522.m1.clang.cxx11thread.serialization.python313.release.PyRosetta.conda.Release.0/conda-release/osx-arm64/pyrosetta-2024.42.post.dev+4.commits.653af1f6ad-py313_0.tar.bz2' -> '/home/benchmark/release/PyRosetta4/conda/devel/osx-arm64/pyrosetta-2024.42.post.dev+4.commits.653af1f6ad-py313_0.tar.bz2'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/Volumes/scratch/w/rosetta/commits/rosetta/tests/benchmark/./benchmark.py", line 422, in <module>
if __name__ == "__main__": main(sys.argv)
File "/Volumes/scratch/w/rosetta/commits/rosetta/tests/benchmark/./benchmark.py", line 419, in main
run_test(setup)
File "/Volumes/scratch/w/rosetta/commits/rosetta/tests/benchmark/./benchmark.py", line 335, in run_test
res = test_suite.run(test=test_name, repository_root=repository_root, working_dir=working_dir, platform=dict(setup.platform), config=setup.config, hpc_driver=hpc_driver, verbose=True, debug=setup.debug)
File "tests/release.py", line 1285, in run
elif test =='PyRosetta.conda.Release': return pyrosetta_conda_release('Release', repository_root, working_dir, platform, config=config, hpc_driver=hpc_driver, verbose=verbose, debug=debug)
File "tests/release.py", line 1260, in pyrosetta_conda_release
def pyrosetta_conda_release(*args, **kwargs): return native_libc_pyrosetta_conda_release(*args, **kwargs)
File "tests/release.py", line 800, in native_libc_pyrosetta_conda_release
shutil.move(f'{working_dir_release_path}/{conda_package_dir}/{conda_package}', f'{conda_release_path}/{conda_package_dir}/{conda_package}')
File "/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/lib/python3.9/shutil.py", line 826, in move
copy_function(src, real_dst)
File "/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/lib/python3.9/shutil.py", line 435, in copy2
copyfile(src, dst, follow_symlinks=follow_symlinks)
File "/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/lib/python3.9/shutil.py", line 264, in copyfile
with open(src, 'rb') as fsrc, open(dst, 'wb') as fdst:
FileNotFoundError: [Errno 2] No such file or directory: '/Volumes/scratch/w/T/commits-20580.844522.m1.clang.cxx11thread.serialization.python313.release.PyRosetta.conda.Release.0/conda-release/osx-arm64/pyrosetta-2024.42.post.dev+4.commits.653af1f6ad-py313_0.tar.bz2'
ERROR: Benchmark back-end script terminates abnormally, marking test state as 'script failed'!