ERROR: benchmark.py script terminated with non-zero exit-code, execution log:
Loading test from: tests/scientific/protein_data_bank_diagnostic/command.py, suite+test: 'scientific.protein_data_bank_diagnostic.cif', test: 'cif'
Found test suite description in file: 'tests/scientific/protein_data_bank_diagnostic/description.md'
Getting python configuration info...
unset __PYVENV_LAUNCHER__ && cd /home/benchmark/w/rosetta-2.hpc-b/prefix/ubuntu-20.04/submit/ubuntu-20.04/python-3.6.gcc/c4d35af457743a916293a15272dc5359/bin && PATH=.:$PATH && /home/benchmark/w/rosetta-2.hpc-b/prefix/ubuntu-20.04/submit/ubuntu-20.04/python-3.6.gcc/c4d35af457743a916293a15272dc5359/bin/python3.6-config --prefix --includes
/home/benchmark/w/rosetta-2.hpc-b/prefix/ubuntu-20.04/submit/ubuntu-20.04/python-3.6.gcc/c4d35af457743a916293a15272dc5359
-I/home/benchmark/w/rosetta-2.hpc-b/prefix/ubuntu-20.04/submit/ubuntu-20.04/python-3.6.gcc/c4d35af457743a916293a15272dc5359/include/python3.6m -I/home/benchmark/w/rosetta-2.hpc-b/prefix/ubuntu-20.04/submit/ubuntu-20.04/python-3.6.gcc/c4d35af457743a916293a15272dc5359/include/python3.6m
Compiling...
cd /home/benchmark/w/rosetta-2.hpc-b/rosetta/commits/rosetta/source && find bin -type l ! -name ".*" -exec rm {} \; ; /home/benchmark/w/rosetta-2.hpc-b/prefix/ubuntu-20.04/submit/ubuntu-20.04/python-3.6.gcc/c4d35af457743a916293a15272dc5359/bin/python3.6 ./scons.py bin mode=release cxx=clang extras= -j16
find: ‘bin’: No such file or directory
scons: Reading SConscript files ...
Copy("user.options", "user.options.template")
Copy("user.settings", "user.settings.template")
Copy("/home/benchmark/w/rosetta-2.hpc-b/rosetta/commits/rosetta/source/src/pilot_apps.src.settings", "/home/benchmark/w/rosetta-2.hpc-b/rosetta/commits/rosetta/source/src/pilot_apps.src.settings.template")
Running versioning script ... Done. (0.3 seconds)
file option.cc.gen.hh being updated
file keys/in.OptionKeys.gen.hh being updated
file keys/inout.OptionKeys.gen.hh being updated
file keys/out.OptionKeys.gen.hh being updated
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file keys/parser.OptionKeys.gen.hh being updated
file keys/jd3.OptionKeys.gen.hh being updated
file keys/jd2.OptionKeys.gen.hh being updated
file keys/view.OptionKeys.gen.hh being updated
file keys/score.OptionKeys.gen.hh being updated
file keys/multithreading.OptionKeys.gen.hh being updated
file keys/recon.OptionKeys.gen.hh being updated
file keys/packing.OptionKeys.gen.hh being updated
file keys/archive.OptionKeys.gen.hh being updated
file keys/carbohydrates.OptionKeys.gen.hh being updated
file keys/rings.OptionKeys.gen.hh being updated
...truncated...
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Traceback (most recent call last):
File "./benchmark.py", line 422, in <module>
if __name__ == "__main__": main(sys.argv)
File "./benchmark.py", line 419, in main
run_test(setup)
File "./benchmark.py", line 335, in run_test
res = test_suite.run(test=test_name, repository_root=repository_root, working_dir=working_dir, platform=dict(setup.platform), config=setup.config, hpc_driver=hpc_driver, verbose=True, debug=setup.debug)
File "tests/scientific/protein_data_bank_diagnostic/command.py", line 348, in run
elif test == 'cif': return protein_data_bank_diagnostic(TestMode.cif, repository_root, working_dir, platform, config, hpc_driver=hpc_driver, verbose=verbose, debug=debug)
File "tests/scientific/protein_data_bank_diagnostic/command.py", line 251, in protein_data_bank_diagnostic
raise RuntimeError(f'Output "output/{job.name}/{job.name}.output.json" for job {job.name} not found -- check output/.hpc-logs/.hpc.protein-data-bank-diagnostic-{job.name}.errors.0.log and output/.hpc-logs/.hpc.protein-data-bank-diagnostic-{job.name}.output.0.log in the file-list-view for more details.')
RuntimeError: Output "output/0329/0329.output.json" for job 0329 not found -- check output/.hpc-logs/.hpc.protein-data-bank-diagnostic-0329.errors.0.log and output/.hpc-logs/.hpc.protein-data-bank-diagnostic-0329.output.0.log in the file-list-view for more details.
ERROR: Benchmark back-end script terminates abnormally, marking test state as 'script failed'!