Test №842335

Test: linux.gcc.mpi.serialization.integration.mpi 「view this page in B3 βῆτα server」
Branch: rosetta:main 「revision: №62132」
Test files: 「file-system-view」「file-list-view」
Daemon: hojo-4 Started at: 2024-10-11 02:42:45 Run time: 2:00:15 State: failed

Test Log

Compiling: find bin -type l ! -name ".*" -exec rm {} \; ; /home/benchmark/prefix/hojo-4/linux/python-3.9.gcc/99a1a29fd465f86265a7c5b92d75dbcd/bin/python3.9 ./scons.py bin mode=release_debug cxx=gcc extras=mpi,serialization -j24 Running: unset __PYVENV_LAUNCHER__ && . /home/benchmark/prefix/hojo-4/linux/python_virtual_environments/python-3.9/f916a9c27c93a1801304b72f29630408/bin/activate && cd /home/benchmark/rosetta/tests/integration && python ./integration.py --mode=release_debug --compiler=gcc --extras=mpi,serialization --timeout=3600 -j24 --skip-comparison --suffix mpi --additional_flags "-in:path:database_cache_dir /home/benchmark/rosetta/.database-binaries/mpiserialization.linuxgccrelease_debug" Running integration script... Command line: unset __PYVENV_LAUNCHER__ && . /home/benchmark/prefix/hojo-4/linux/python_virtual_environments/python-3.9/f916a9c27c93a1801304b72f29630408/bin/activate && cd /home/benchmark/rosetta/tests/integration && python ./integration.py --mode=release_debug --compiler=gcc --extras=mpi,serialization --timeout=3600 -j24 --skip-comparison --suffix mpi --additional_flags "-in:path:database_cache_dir /home/benchmark/rosetta/.database-binaries/mpiserialization.linuxgccrelease_debug" Using Rosetta source dir at: /home/benchmark/rosetta/source Using Rosetta database dir at:/home/benchmark/rosetta/database Current Versions Tested: MAIN: 4ccbc40071fe28a5445d9090fd128b858ff75441 TOOLS: b0af2521cbed1f2bde597ef1c5406efa376a6f85 DEMOS: 48c9239db73b9a8c828954d9215c983b9f144c92 Python: `/home/benchmark/prefix/hojo-4/linux/python_virtual_environments/python-3.9/f916a9c27c93a1801304b72f29630408/bin/python` Outdir: new Running Test simple_cycpep_predict_thioether_lariat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_thioether_lariat/command.mpi.sh Running Test simple_cycpep_predict_terminal_disulfide_tails_2 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_tails_2/command.mpi.sh Running Test simple_cycpep_predict_terminal_disulfide_tails ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_tails/command.mpi.sh Running Test simple_cycpep_predict_terminal_disulfide ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide/command.mpi.sh Running Test simple_cycpep_predict_sidechain_isopeptide_reverse ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_sidechain_isopeptide_reverse/command.mpi.sh Running Test simple_cycpep_predict_sidechain_isopeptide ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_sidechain_isopeptide/command.mpi.sh Running Test simple_cycpep_predict_nterm_isopeptide_lariat_tailless ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_nterm_isopeptide_lariat_tailless/command.mpi.sh Running Test simple_cycpep_predict_nterm_isopeptide_lariat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_nterm_isopeptide_lariat/command.mpi.sh Running Test simple_cycpep_predict_lanthionine ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_lanthionine/command.mpi.sh Running Test simple_cycpep_predict_cterm_isopeptide_lariat_tailless ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_cterm_isopeptide_lariat_tailless/command.mpi.sh Running Test simple_cycpep_predict_cterm_isopeptide_lariat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_cterm_isopeptide_lariat/command.mpi.sh Running Test simple_cycpep_predict_bondangle_bondlength ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_bondangle_bondlength/command.mpi.sh Running Test simple_cycpep_predict_beta_thioether_lariat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_beta_thioether_lariat/command.mpi.sh Running Test replica_docking ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/replica_docking/command.mpi.sh Running Test recon_design_mpi ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/recon_design_mpi/command.mpi.sh Running Test mpi_simple_cycpep_predict_computing_pnear_to_all ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpi_simple_cycpep_predict_computing_pnear_to_all/command.mpi.sh Running Test mpi_simple_cycpep_predict_4level ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpi_simple_cycpep_predict_4level/command.mpi.sh Running Test mpi_simple_cycpep_predict ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpi_simple_cycpep_predict/command.mpi.sh Running Test helical_bundle_predict_skipping_residues ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_skipping_residues/command.mpi.sh Running Test helical_bundle_predict_sequence ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_sequence/command.mpi.sh Running Test helical_bundle_predict_psipred_with_helix_globals ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_psipred_with_helix_globals/command.mpi.sh Running Test helical_bundle_predict_psipred ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_psipred/command.mpi.sh Running Test helical_bundle_predict ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict/command.mpi.sh Running Test features_pdb_mpi ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features_pdb_mpi/command.mpi.sh Finished simple_cycpep_predict_terminal_disulfide in 266 seconds [~ 798 test (99.62546816479401%) started, 3 in queue, 24 running] Running Test database_md5 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/database_md5/command.mpi.sh Finished simple_cycpep_predict_terminal_disulfide_tails in 338 seconds [~ 799 test (99.75031210986268%) started, 2 in queue, 24 running] Running Test threefold_symm_peptide_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/threefold_symm_peptide_design/command.mpi.sh Finished simple_cycpep_predict_lanthionine in 717 seconds [~ 800 test (99.87515605493134%) started, 1 in queue, 24 running] Running Test simple_cycpep_predict_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_design/command.mpi.sh Finished simple_cycpep_predict_sidechain_isopeptide in 733 seconds [~ 801 test (100.0%) started, 0 in queue, 24 running] Running Test backbonegridsampler_nstruct_mode ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backbonegridsampler_nstruct_mode/command.mpi.sh Finished simple_cycpep_predict_cterm_isopeptide_lariat_tailless in 747 seconds [~ 801 test (100.0%) started, 0 in queue, 23 running] Finished simple_cycpep_predict_cterm_isopeptide_lariat in 760 seconds [~ 801 test (100.0%) started, 0 in queue, 22 running] Finished simple_cycpep_predict_sidechain_isopeptide_reverse in 785 seconds [~ 801 test (100.0%) started, 0 in queue, 21 running] Finished simple_cycpep_predict_nterm_isopeptide_lariat_tailless in 838 seconds [~ 801 test (100.0%) started, 0 in queue, 20 running] Finished simple_cycpep_predict_thioether_lariat in 843 seconds [~ 801 test (100.0%) started, 0 in queue, 19 running] Finished simple_cycpep_predict_nterm_isopeptide_lariat in 849 seconds [~ 801 test (100.0%) started, 0 in queue, 18 running] dumping features_IntegrationTest.db3_1 ... dumping features_IntegrationTest.db3_2 ... merging dumps ... off exclusive analyzing database ... Finished features_pdb_mpi in 853 seconds [~ 801 test (100.0%) started, 0 in queue, 17 running] Finished mpi_simple_cycpep_predict_4level in 859 seconds [~ 801 test (100.0%) started, 0 in queue, 16 running] Finished recon_design_mpi in 889 seconds [~ 801 test (100.0%) started, 0 in queue, 15 running] Finished mpi_simple_cycpep_predict in 903 seconds [~ 801 test (100.0%) started, 0 in queue, 14 running] Finished simple_cycpep_predict_beta_thioether_lariat in 966 seconds [~ 801 test (100.0%) started, 0 in queue, 13 running] Finished mpi_simple_cycpep_predict_computing_pnear_to_all in 1018 seconds [~ 801 test (100.0%) started, 0 in queue, 12 running] Finished simple_cycpep_predict_bondangle_bondlength in 1057 seconds [~ 801 test (100.0%) started, 0 in queue, 11 running] Finished threefold_symm_peptide_design in 771 seconds [~ 801 test (100.0%) started, 0 in queue, 10 running] Finished simple_cycpep_predict_terminal_disulfide_tails_2 in 1144 seconds [~ 801 test (100.0%) started, 0 in queue, 9 running] Finished backbonegridsampler_nstruct_mode in 449 seconds [~ 801 test (100.0%) started, 0 in queue, 8 running] Finished simple_cycpep_predict_design in 494 seconds [~ 801 test (100.0%) started, 0 in queue, 7 running] Finished database_md5 in 1030 seconds [~ 801 test (100.0%) started, 0 in queue, 6 running] ******** (C) Copyright Rosetta Commons Member Institutions. *************** * Use of Rosetta for commercial purposes may require purchase of a license. * ******** See LICENSE.md or email license@uw.edu for more details. ********** ******** (C) Copyright Rosetta Commons Member Institutions. *************** ******** (C) Copyright Rosetta Commons Member Institutions. *************** * Use of Rosetta for commercial purposes may require purchase of a license. * ******** See LICENSE.md or email license@uw.edu for more details. ********** * Use of Rosetta for commercial purposes may require purchase of a license. * ******** See LICENSE.md or email license@uw.edu for more details. ********** ******** (C) Copyright Rosetta Commons Member Institutions. *************** * Use of Rosetta for commercial purposes may require purchase of a license. * ******** See LICENSE.md or email license@uw.edu for more details. ********** Finished helical_bundle_predict_skipping_residues in 1401 seconds [~ 801 test (100.0%) started, 0 in queue, 5 running] ******** (C) Copyright Rosetta Commons Member Institutions. *************** * Use of Rosetta for commercial purposes may require purchase of a license. * ******** See LICENSE.md or email license@uw.edu for more details. ********** ******** (C) Copyright Rosetta Commons Member Institutions. *************** * Use of Rosetta for commercial purposes may require purchase of a license. * ******** See LICENSE.md or email license@uw.edu for more details. ********** ******** (C) Copyright Rosetta Commons Member Institutions. *************** * Use of Rosetta for commercial purposes may require purchase of a license. * ******** See LICENSE.md or email license@uw.edu for more details. ********** ******** (C) Copyright Rosetta Commons Member Institutions. *************** * Use of Rosetta for commercial purposes may require purchase of a license. * ******** See LICENSE.md or email license@uw.edu for more details. ********** Finished helical_bundle_predict in 1419 seconds [~ 801 test (100.0%) started, 0 in queue, 4 running] ******** (C) Copyright Rosetta Commons Member Institutions. *************** ******** (C) Copyright Rosetta Commons Member Institutions. *************** * Use of Rosetta for commercial purposes may require purchase of a license. * ******** See LICENSE.md or email license@uw.edu for more details. ********** * Use of Rosetta for commercial purposes may require purchase of a license. * ******** See LICENSE.md or email license@uw.edu for more details. ********** ******** (C) Copyright Rosetta Commons Member Institutions. *************** * Use of Rosetta for commercial purposes may require purchase of a license. * ******** See LICENSE.md or email license@uw.edu for more details. ********** ******** (C) Copyright Rosetta Commons Member Institutions. *************** * Use of Rosetta for commercial purposes may require purchase of a license. * ******** See LICENSE.md or email license@uw.edu for more details. ********** Finished helical_bundle_predict_sequence in 1420 seconds [~ 801 test (100.0%) started, 0 in queue, 3 running] ******** (C) Copyright Rosetta Commons Member Institutions. *************** * Use of Rosetta for commercial purposes may require purchase of a license. * ******** See LICENSE.md or email license@uw.edu for more details. ********** ******** (C) Copyright Rosetta Commons Member Institutions. *************** * Use of Rosetta for commercial purposes may require purchase of a license. * ******** See LICENSE.md or email license@uw.edu for more details. ********** ******** (C) Copyright Rosetta Commons Member Institutions. *************** * Use of Rosetta for commercial purposes may require purchase of a license. * ******** See LICENSE.md or email license@uw.edu for more details. ********** ******** (C) Copyright Rosetta Commons Member Institutions. *************** * Use of Rosetta for commercial purposes may require purchase of a license. * ******** See LICENSE.md or email license@uw.edu for more details. ********** Finished helical_bundle_predict_psipred_with_helix_globals in 1570 seconds [~ 801 test (100.0%) started, 0 in queue, 2 running] ******** (C) Copyright Rosetta Commons Member Institutions. *************** ******** (C) Copyright Rosetta Commons Member Institutions. *************** * Use of Rosetta for commercial purposes may require purchase of a license. * * Use of Rosetta for commercial purposes may require purchase of a license. * ******** See LICENSE.md or email license@uw.edu for more details. ********** ******** (C) Copyright Rosetta Commons Member Institutions. *************** * Use of Rosetta for commercial purposes may require purchase of a license. * ******** See LICENSE.md or email license@uw.edu for more details. ********** ******** See LICENSE.md or email license@uw.edu for more details. ********** ******** (C) Copyright Rosetta Commons Member Institutions. *************** * Use of Rosetta for commercial purposes may require purchase of a license. * ******** See LICENSE.md or email license@uw.edu for more details. ********** Finished helical_bundle_predict_psipred in 1599 seconds [~ 801 test (100.0%) started, 0 in queue, 1 running] *** Test replica_docking exceeded the timeout=3600 and will be killed! [2024-10-11 04:28:59.867448] Finished replica_docking in 3600 seconds [~ 801 test (100.0%) started, 0 in queue, 0 running] Skipping comparison/analysis phase because command line option "--skip-comparison" was specified... Missing new/runtimes.yaml ──────────────── 'hojo-4' comparing main:62132 linux.gcc.mpi.serialization.integration.mpi test_id=842335 vs. main:62131 previous_test_id=841877 ────────────────

Sub-Tests Results

linux.gcc.mpi.serialization.integration.mpi.backbonegridsampler_nstruct_mode 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62131/backbonegridsampler_nstruct_mode/log and /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode/log differ Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0001.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0002.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0003.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0004.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0005.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0006.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0007.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0008.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0009.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0010.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0011.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0012.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0013.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0014.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0015.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0016.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0017.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0018.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0019.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0020.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0021.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0022.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0023.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0024.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: score_sorted.sc Only in /home/benchmark/working_dir/main:62131/backbonegridsampler_nstruct_mode: .test_did_not_run.log Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62131/backbonegridsampler_nstruct_mode/log /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode/log 1,8d0 < -------------------------------------------------------------------------- < The value of the MCA parameter "plm_rsh_agent" was set to a path < that could not be found: < < plm_rsh_agent: ssh : rsh < < Please either unset the parameter, or check that the path is correct < -------------------------------------------------------------------------- Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0001.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0002.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0003.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0004.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0005.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0006.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0007.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0008.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0009.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0010.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0011.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0012.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0013.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0014.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0015.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0016.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0017.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0018.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0019.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0020.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0021.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0022.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0023.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0024.pdb Only in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: score_sorted.sc Only in /home/benchmark/working_dir/main:62131/backbonegridsampler_nstruct_mode: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.database_md5 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62131/database_md5/database_md5s.txt and /home/benchmark/working_dir/main:62132/database_md5/database_md5s.txt differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62131/database_md5/database_md5s.txt /home/benchmark/working_dir/main:62132/database_md5/database_md5s.txt 1,2d0 < 4ef19f47bc3ca32b82d0627e1026fc01 ./additional_protocol_data/.git < 5fbf125d44040003ded7b6d8f011d101 ./additional_protocol_data/antibody/README.md 2841,2843d2838 < 7aef8d49feb1dd8e475ccc9a3006c662 ./additional_protocol_data/antibody/blast_database/database.H3.3.phr < 0080999c0b4c2357dce77965898eabe5 ./additional_protocol_data/antibody/blast_database/database.H3.3.pin < a7f2962cc3f35de9782c6b524f8578aa ./additional_protocol_data/antibody/blast_database/database.H3.3.psq 2847a2843,2845 > 7aef8d49feb1dd8e475ccc9a3006c662 ./additional_protocol_data/antibody/blast_database/database.H3.3.phr > 0080999c0b4c2357dce77965898eabe5 ./additional_protocol_data/antibody/blast_database/database.H3.3.pin > a7f2962cc3f35de9782c6b524f8578aa ./additional_protocol_data/antibody/blast_database/database.H3.3.psq 2849,2851d2846 < fccbce74ae0414f7ad9af425eebd1b72 ./additional_protocol_data/antibody/blast_database/database.H3.4.phr < 542c457dc006df937514925b680c1a1c ./additional_protocol_data/antibody/blast_database/database.H3.4.pin < 661534c60f7ce518683a454a5c482cc3 ./additional_protocol_data/antibody/blast_database/database.H3.4.psq 2855a2851,2853 > fccbce74ae0414f7ad9af425eebd1b72 ./additional_protocol_data/antibody/blast_database/database.H3.4.phr > 542c457dc006df937514925b680c1a1c ./additional_protocol_data/antibody/blast_database/database.H3.4.pin > 661534c60f7ce518683a454a5c482cc3 ./additional_protocol_data/antibody/blast_database/database.H3.4.psq 2857,2859d2854 < d77df49d4f8954d8f06a9677d2e0ee8d ./additional_protocol_data/antibody/blast_database/database.H3.5.phr < bc9e1a233e13edb0278275fff6661f88 ./additional_protocol_data/antibody/blast_database/database.H3.5.pin < 3cbf814abfdd30c99ad7f7d6a1a04c88 ./additional_protocol_data/antibody/blast_database/database.H3.5.psq 2867a2863,2865 > d77df49d4f8954d8f06a9677d2e0ee8d ./additional_protocol_data/antibody/blast_database/database.H3.5.phr > bc9e1a233e13edb0278275fff6661f88 ./additional_protocol_data/antibody/blast_database/database.H3.5.pin > 3cbf814abfdd30c99ad7f7d6a1a04c88 ./additional_protocol_data/antibody/blast_database/database.H3.5.psq 2869,2871d2866 < 55a5598991a9f298ade43ec82e9f4c15 ./additional_protocol_data/antibody/blast_database/database.H3.6.phr < 856232074776d0513541c6358ca9dbc2 ./additional_protocol_data/antibody/blast_database/database.H3.6.pin < 8bc5fb2ee15793342625980756486135 ./additional_protocol_data/antibody/blast_database/database.H3.6.psq 2875a2871,2873 > 55a5598991a9f298ade43ec82e9f4c15 ./additional_protocol_data/antibody/blast_database/database.H3.6.phr > 856232074776d0513541c6358ca9dbc2 ./additional_protocol_data/antibody/blast_database/database.H3.6.pin > 8bc5fb2ee15793342625980756486135 ./additional_protocol_data/antibody/blast_database/database.H3.6.psq 3026d3023 < 191f474ac8a5f9b60421c7d5fb7bff90 ./additional_protocol_data/antibody/info/frl.info 3027a3025 > 191f474ac8a5f9b60421c7d5fb7bff90 ./additional_protocol_data/antibody/info/frl.info 3030a3029,3030 > 5fbf125d44040003ded7b6d8f011d101 ./additional_protocol_data/antibody/README.md > 4ef19f47bc3ca32b82d0627e1026fc01 ./additional_protocol_data/.git 3432d3431 < 6b69acec82635879f13b95515328f2d3 ./additional_protocol_data/sewing/xsmax_bb_ss_AILV_resl0.8_msc0.3/xsmax_bb_ss_AILV_resl0.8_msc0.3.rpm.bin.gz 3442,3444c3441 < 397421a097a5ffc74ce3957107315c4b ./additional_protocol_data/splice/antibodies/RBO_databases/kappa/rb.database < 71efc6a74fe3dabd7be7b9e6168166dc ./additional_protocol_data/splice/antibodies/RBO_databases/lambda/rb.database < 397421a097a5ffc74ce3957107315c4b ./additional_protocol_data/splice/antibodies/RBO_databases/rb.2BRR.database --- > 6b69acec82635879f13b95515328f2d3 ./additional_protocol_data/sewing/xsmax_bb_ss_AILV_resl0.8_msc0.3/xsmax_bb_ss_AILV_resl0.8_msc0.3.rpm.bin.gz 16264a16262,16264 > 397421a097a5ffc74ce3957107315c4b ./additional_protocol_data/splice/antibodies/RBO_databases/kappa/rb.database > 71efc6a74fe3dabd7be7b9e6168166dc ./additional_protocol_data/splice/antibodies/RBO_databases/lambda/rb.database > 397421a097a5ffc74ce3957107315c4b ./additional_protocol_data/splice/antibodies/RBO_databases/rb.2BRR.database 16270a16271 > b103e5cabc0dc1e890d9757a3e6bd8a7 ./additional_protocol_data/splice/antibodies/torsion_databases/lambda/deposition_dates.txt 16275d16275 < b103e5cabc0dc1e890d9757a3e6bd8a7 ./additional_protocol_data/splice/antibodies/torsion_databases/lambda/deposition_dates.txt 16475,16478d16474 < f9e3c5abd350b33b7a91d5a22116b3db ./additional_protocol_data/tcr/seq/A_TCR_CDR2HV4_25.fasta < f291c025fda2beb892ce78e3b44e2943 ./additional_protocol_data/tcr/seq/A_TCR_CDR2HV4_26.fasta < 47d5e7890cdc50ed3274b3fece40b9fa ./additional_protocol_data/tcr/seq/A_TCR_CDR2HV4_27.fasta < 632b3b2ca0f04c13d3ab1a0870218b6a ./additional_protocol_data/tcr/seq/A_TCR_CDR2HV4_28.fasta 16482a16479,16482 > f9e3c5abd350b33b7a91d5a22116b3db ./additional_protocol_data/tcr/seq/A_TCR_CDR2HV4_25.fasta > f291c025fda2beb892ce78e3b44e2943 ./additional_protocol_data/tcr/seq/A_TCR_CDR2HV4_26.fasta > 47d5e7890cdc50ed3274b3fece40b9fa ./additional_protocol_data/tcr/seq/A_TCR_CDR2HV4_27.fasta > 632b3b2ca0f04c13d3ab1a0870218b6a ./additional_protocol_data/tcr/seq/A_TCR_CDR2HV4_28.fasta 16498a16499 > 2f1e876acf8a73bbf4afe66d702617cb ./additional_protocol_data/tcr/seq/blastdb_commands.txt 16501,16504d16501 < 17e069b8cd542f99c5f6ded84ebb6185 ./additional_protocol_data/tcr/seq/B_TCR_CDR2HV4_28.fasta < cb0e90f31b4f8fca5256c85da0ed0dc4 ./additional_protocol_data/tcr/seq/B_TCR_CDR2HV4_29.fasta < a7250c0398613af6b8532e9a97c33ac2 ./additional_protocol_data/tcr/seq/B_TCR_CDR2HV4_30.fasta < de4ef4e7eed328432ee3ab0577da6b90 ./additional_protocol_data/tcr/seq/B_TCR_CDR2HV4_31.fasta 16508a16506,16509 > 17e069b8cd542f99c5f6ded84ebb6185 ./additional_protocol_data/tcr/seq/B_TCR_CDR2HV4_28.fasta > cb0e90f31b4f8fca5256c85da0ed0dc4 ./additional_protocol_data/tcr/seq/B_TCR_CDR2HV4_29.fasta > a7250c0398613af6b8532e9a97c33ac2 ./additional_protocol_data/tcr/seq/B_TCR_CDR2HV4_30.fasta > de4ef4e7eed328432ee3ab0577da6b90 ./additional_protocol_data/tcr/seq/B_TCR_CDR2HV4_31.fasta 16528d16528 < 2f1e876acf8a73bbf4afe66d702617cb ./additional_protocol_data/tcr/seq/blastdb_commands.txt 16549,16550d16548 < 205a7dd23ea211681f56213eb6f2191b ./chemical/atom_type_sets/fa_standard/extras.txt < 4936adfa080a57608f4a0398c770ec2f ./chemical/atom_type_sets/fa_standard/extras/NACCESS_sasa_radii.txt 16556d16553 < 1e75039ce056c89fb1251ffa0fd752af ./chemical/atom_type_sets/fa_standard/extras/lk_ball_wtd.txt 16559a16557 > 1e75039ce056c89fb1251ffa0fd752af ./chemical/atom_type_sets/fa_standard/extras/lk_ball_wtd.txt 16562a16561 > 4936adfa080a57608f4a0398c770ec2f ./chemical/atom_type_sets/fa_standard/extras/NACCESS_sasa_radii.txt 16567,16570c16566 < d7cc24faf38d35809152ac378366a16d ./chemical/atom_type_sets/fa_standard/ideal_bond_lengths.txt < 98bf535bd5a364fdba965713b13a73d7 ./chemical/atom_type_sets/fa_standard/meta.txt < 1c9cff136fef9c88dc3a0c6dcda2072f ./chemical/atom_type_sets/fa_standard/occluded_hbond_solvation_params.acceptors.txt < 61a9d205ecb98f06e6a9140623a6aae5 ./chemical/atom_type_sets/fa_standard/occluded_hbond_solvation_params.donors.txt --- > 205a7dd23ea211681f56213eb6f2191b ./chemical/atom_type_sets/fa_standard/extras.txt 16574,16575d16569 < 205a7dd23ea211681f56213eb6f2191b ./chemical/atom_type_sets/fa_standard_genpot/extras.txt < 96011d4dd538fca264021c34b4d4dbbf ./chemical/atom_type_sets/fa_standard_genpot/extras/NACCESS_sasa_radii.txt 16581d16574 < 1e75039ce056c89fb1251ffa0fd752af ./chemical/atom_type_sets/fa_standard_genpot/extras/lk_ball_wtd.txt 16584a16578 > 1e75039ce056c89fb1251ffa0fd752af ./chemical/atom_type_sets/fa_standard_genpot/extras/lk_ball_wtd.txt 16587a16582 > 96011d4dd538fca264021c34b4d4dbbf ./chemical/atom_type_sets/fa_standard_genpot/extras/NACCESS_sasa_radii.txt 16591a16587 > 205a7dd23ea211681f56213eb6f2191b ./chemical/atom_type_sets/fa_standard_genpot/extras.txt 16595a16592,16595 > d7cc24faf38d35809152ac378366a16d ./chemical/atom_type_sets/fa_standard/ideal_bond_lengths.txt > 98bf535bd5a364fdba965713b13a73d7 ./chemical/atom_type_sets/fa_standard/meta.txt > 1c9cff136fef9c88dc3a0c6dcda2072f ./chemical/atom_type_sets/fa_standard/occluded_hbond_solvation_params.acceptors.txt > 61a9d205ecb98f06e6a9140623a6aae5 ./chemical/atom_type_sets/fa_standard/occluded_hbond_solvation_params.donors.txt 16598,16599d16597 < 205a7dd23ea211681f56213eb6f2191b ./chemical/atom_type_sets/fa_standard_talaris/extras.txt < 430e3118c99eff6a67293e09a5876f06 ./chemical/atom_type_sets/fa_standard_talaris/extras/NACCESS_sasa_radii.txt 16605d16602 < 3bcbf0a76eaeea66b51a0b11ca741a1d ./chemical/atom_type_sets/fa_standard_talaris/extras/lk_ball_wtd.txt 16608a16606 > 3bcbf0a76eaeea66b51a0b11ca741a1d ./chemical/atom_type_sets/fa_standard_talaris/extras/lk_ball_wtd.txt 16611a16610 > 430e3118c99eff6a67293e09a5876f06 ./chemical/atom_type_sets/fa_standard_talaris/extras/NACCESS_sasa_radii.txt 16615a16615 > 205a7dd23ea211681f56213eb6f2191b ./chemical/atom_type_sets/fa_standard_talaris/extras.txt 16621,16623d16620 < bac7005221032abd533fc2883f9dbc65 ./chemical/carbohydrates/common_glycans/N-glycan_core.iupac < a3807a3312100d9021c4e8005cde82da ./chemical/carbohydrates/common_glycans/README.txt < dbb43e457b8d1fe7feadb50f8145b117 ./chemical/carbohydrates/common_glycans/bisected_N-glycan_core.iupac 16624a16622 > dbb43e457b8d1fe7feadb50f8145b117 ./chemical/carbohydrates/common_glycans/bisected_N-glycan_core.iupac 16636,16637d16633 < b57ecb6a6f277967e846ddfc56d1c0ab ./chemical/carbohydrates/common_glycans/hybrid_N-glycan_core.iupac < ea89308725b70c259201b2495a87031b ./chemical/carbohydrates/common_glycans/hybrid_bisected_N-glycan_core.iupac 16638a16635 > ea89308725b70c259201b2495a87031b ./chemical/carbohydrates/common_glycans/hybrid_bisected_N-glycan_core.iupac 16639a16637 > b57ecb6a6f277967e846ddfc56d1c0ab ./chemical/carbohydrates/common_glycans/hybrid_N-glycan_core.iupac 16641a16640,16641 > bac7005221032abd533fc2883f9dbc65 ./chemical/carbohydrates/common_glycans/N-glycan_core.iupac > a3807a3312100d9021c4e8005cde82da ./chemical/carbohydrates/common_glycans/README.txt 16643d16642 < 745646c471652738ba3ab3ff91806791 ./chemical/carbohydrates/linkage_conformers/original.table 16646a16646 > 745646c471652738ba3ab3ff91806791 ./chemical/carbohydrates/linkage_conformers/original.table 16661d16660 < 46ae7b9b9dc0e9ca4790bcd3a940308f ./chemical/pdb_components/README_components.txt 16698d16696 < 8a8ac8762b4dfbb31b1ae483d5767a88 ./chemical/pdb_components/override.txt 16699a16698,16699 > 8a8ac8762b4dfbb31b1ae483d5767a88 ./chemical/pdb_components/override.txt > 46ae7b9b9dc0e9ca4790bcd3a940308f ./chemical/pdb_components/README_components.txt 16704d16703 < fa7cc1ebd3a7612c0dcbdce1a54942c6 ./chemical/residue_type_sets/centroid/metapatches.txt 16708,16720c16707 < bc1881185b52b9edf89f1a389099d046 ./chemical/residue_type_sets/centroid/patches.txt < 6d17ea194d5ca7ef9b60fc3f542ebe0a ./chemical/residue_type_sets/centroid/patches.txt.slim < 35339569e4c3f1a317755ca55ca0d6bd ./chemical/residue_type_sets/centroid/patches/C_methylamidated.txt < dba92db0372d119de830358937bad50d ./chemical/residue_type_sets/centroid/patches/CtermProtein.txt < 1f8e3d746a69f8b154b481318d23e452 ./chemical/residue_type_sets/centroid/patches/CtermTruncation.txt < aa08341bf9528937a60fad1dfbdc89b2 ./chemical/residue_type_sets/centroid/patches/D_AA.txt < 0b5198668ffa9e75626ccecd276aac7f ./chemical/residue_type_sets/centroid/patches/N_acetylated.txt < 342e2afe4129b2fd9d86a93db74022ef ./chemical/residue_type_sets/centroid/patches/NtermProtein.txt < 78facaa28083c7ebaa51edafb3086cd0 ./chemical/residue_type_sets/centroid/patches/NtermTruncation.txt < 40e6359fa187a35a3ca81356be80bdc1 ./chemical/residue_type_sets/centroid/patches/RepulsiveOnly_centroid.txt < a9d3b72d5308ecdd59c77a61f67b53c9 ./chemical/residue_type_sets/centroid/patches/ShoveBB.txt < 65366986bab009eb5846a05816bab6d9 ./chemical/residue_type_sets/centroid/patches/VirtualBB.txt < de9a6cc033aed0b0846bacd87fda5167 ./chemical/residue_type_sets/centroid/patches/VirtualNterm.txt --- > fa7cc1ebd3a7612c0dcbdce1a54942c6 ./chemical/residue_type_sets/centroid/metapatches.txt 16757a16745,16747 > ea3694199b1bbf038bffa028b0ebdc79 ./chemical/residue_type_sets/centroid/patches/carbohydrates/cutpoint_lower.txt > 5715cbe31fe27c5be58b10ac94427a7e ./chemical/residue_type_sets/centroid/patches/carbohydrates/cutpoint_upper.txt > ed014fe18b5d6c3e97f8a04fff123c42 ./chemical/residue_type_sets/centroid/patches/carbohydrates/lower_terminus.txt 16759,16761d16748 < b8c2ae536dcc818c25d57a92e878d689 ./chemical/residue_type_sets/centroid/patches/carbohydrates/N-R-3'-hydroxybutyryl-3-amination.txt < 0b0732ece9e12bdfcdf7299460f7b493 ./chemical/residue_type_sets/centroid/patches/carbohydrates/N-acetyl-2-amination.txt < aa7a25f64f2cab302e446dfce4955d74 ./chemical/residue_type_sets/centroid/patches/carbohydrates/N-linked_glycosylation.txt 16765a16753,16755 > 0b0732ece9e12bdfcdf7299460f7b493 ./chemical/residue_type_sets/centroid/patches/carbohydrates/N-acetyl-2-amination.txt > aa7a25f64f2cab302e446dfce4955d74 ./chemical/residue_type_sets/centroid/patches/carbohydrates/N-linked_glycosylation.txt > b8c2ae536dcc818c25d57a92e878d689 ./chemical/residue_type_sets/centroid/patches/carbohydrates/N-R-3'-hydroxybutyryl-3-amination.txt 16777,16780d16766 < 546193fa7af61f5c2bd8a481e6f3df80 ./chemical/residue_type_sets/centroid/patches/carbohydrates/README.txt < ea3694199b1bbf038bffa028b0ebdc79 ./chemical/residue_type_sets/centroid/patches/carbohydrates/cutpoint_lower.txt < 5715cbe31fe27c5be58b10ac94427a7e ./chemical/residue_type_sets/centroid/patches/carbohydrates/cutpoint_upper.txt < ed014fe18b5d6c3e97f8a04fff123c42 ./chemical/residue_type_sets/centroid/patches/carbohydrates/lower_terminus.txt 16781a16768 > 546193fa7af61f5c2bd8a481e6f3df80 ./chemical/residue_type_sets/centroid/patches/carbohydrates/README.txt 16782a16770,16773 > 35339569e4c3f1a317755ca55ca0d6bd ./chemical/residue_type_sets/centroid/patches/C_methylamidated.txt > dba92db0372d119de830358937bad50d ./chemical/residue_type_sets/centroid/patches/CtermProtein.txt > 1f8e3d746a69f8b154b481318d23e452 ./chemical/residue_type_sets/centroid/patches/CtermTruncation.txt > aa08341bf9528937a60fad1dfbdc89b2 ./chemical/residue_type_sets/centroid/patches/D_AA.txt 16783a16775,16777 > 0b5198668ffa9e75626ccecd276aac7f ./chemical/residue_type_sets/centroid/patches/N_acetylated.txt > 342e2afe4129b2fd9d86a93db74022ef ./chemical/residue_type_sets/centroid/patches/NtermProtein.txt > 78facaa28083c7ebaa51edafb3086cd0 ./chemical/residue_type_sets/centroid/patches/NtermTruncation.txt 16796a16791 > 40e6359fa187a35a3ca81356be80bdc1 ./chemical/residue_type_sets/centroid/patches/RepulsiveOnly_centroid.txt 16797a16793 > a9d3b72d5308ecdd59c77a61f67b53c9 ./chemical/residue_type_sets/centroid/patches/ShoveBB.txt 16798a16795,16796 > bc1881185b52b9edf89f1a389099d046 ./chemical/residue_type_sets/centroid/patches.txt > 6d17ea194d5ca7ef9b60fc3f542ebe0a ./chemical/residue_type_sets/centroid/patches.txt.slim 16800c16798,16868 < 98ac1a997c915e16533d4b7026f70cac ./chemical/residue_type_sets/centroid/residue_types.txt --- > 65366986bab009eb5846a05816bab6d9 ./chemical/residue_type_sets/centroid/patches/VirtualBB.txt > de9a6cc033aed0b0846bacd87fda5167 ./chemical/residue_type_sets/centroid/patches/VirtualNterm.txt > a5c6a716d6b702bbcc49048e8e282a4f ./chemical/residue_type_sets/centroid_pre_talaris2013/merge_residue_behaviors.txt > 7d1696aa96ab4eae80fa10bcd88797d8 ./chemical/residue_type_sets/centroid_pre_talaris2013/metapatches.txt > 35339569e4c3f1a317755ca55ca0d6bd ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/C_methylamidated.txt > 41f77546ee1d217dd750ec79878e39e3 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/CtermProtein.txt > 1f8e3d746a69f8b154b481318d23e452 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/CtermTruncation.txt > f59e3e43a78fb01969570795e3319342 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/D_AA.txt > 07a6c5788757a86b3eb4c406b72edf38 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/disulfide.txt > 3e20475ce859a6c3a7c69c4f3f104d75 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/LowerDNA.txt > 0b5198668ffa9e75626ccecd276aac7f ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/N_acetylated.txt > 342e2afe4129b2fd9d86a93db74022ef ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/NtermProtein.txt > 78facaa28083c7ebaa51edafb3086cd0 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/NtermTruncation.txt > 3bff6f35a4f53da8ac59963b19801eeb ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/oop_post.txt > aa02004370365a8060fb27ec22891222 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/oop_pre.txt > beb3307e27735cc5881a943345831664 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/pro_hydroxylated_case1.txt > e2bcdb865d6782847dabbc731981c4a8 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/pro_hydroxylated_case2.txt > a05ab6da2e1a0872cddca7bcfe2e291e ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/protein_centroid_with_HA.txt > fac36687295c300c82663d2c347f9b93 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/protein_cutpoint_lower.txt > 9771394a6c9df380950e28ce353ca7da ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/protein_cutpoint_upper.txt > 40e6359fa187a35a3ca81356be80bdc1 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/RepulsiveOnly_centroid.txt > 0c6e349c04aa3c0f69f8c2527170d355 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/ser_phosphorylated.txt > 79fedada1025e5e3c80dc6fb660654e2 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/ShoveBB.txt > 1c1f3edc22acd6c94e57c6ca3aa0ba94 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/thr_phosphorylated.txt > c31ce9b2e388861400e32908a1ab47cf ./chemical/residue_type_sets/centroid_pre_talaris2013/patches.txt > 6d17ea194d5ca7ef9b60fc3f542ebe0a ./chemical/residue_type_sets/centroid_pre_talaris2013/patches.txt.slim > 25b2c7162faeeacf340ad3e90ed19368 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/tyr_sulfated.txt > 447e7a42a72766086b4f4e8fc7fed919 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/UpperDNA.txt > 65366986bab009eb5846a05816bab6d9 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/VirtualBB.txt > 2c6ff787a3ca6b9bf12c94c456215d33 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/VirtualDNAPhosphate.txt > de9a6cc033aed0b0846bacd87fda5167 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/VirtualNterm.txt > 350861463c96f2a890c9b69bb140c818 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/08A.params > c0c4be3534870b6fb049189767f68337 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/08B.params > 072869e871a6095f176cf5e6b9511fc2 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/ADE.params > 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./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/GLN.params > 7b9712b7b176f822e0c9f0862bcc7ebc ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/GLU.params > 71fb8d575108c8444d4f9bc9c80a4916 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/GLY.params > 297a005ca197f34b027c2fd6b054026b ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/GUA.params > 6fe9b29f6cdf2ff7a6bda50241205bef ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/HIS_D.params > 25d5a7dddf271c416c40cf96ff0fd1b7 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/HIS.params > 2fffe904b9bec9422aaf5cede1e85758 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/ILE.params > b179cfd2f27a200d2f8032e8736595e5 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/LEU.params > f37fad5d692357a0cdeb52015fbf494f ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/LYS.params > 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./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types.txt > ce2fc69d60b5638d0d405c446df47a1b ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/TYR.params > 31792b378ba3fa084229d8fa2f6fa93f ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/VAL.params > f676d7adfcda2e2a7153abf00aabbf1b ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/VRT.params 16802d16869 < b5fb29f160c3bacb3fb39e98347b75ad ./chemical/residue_type_sets/centroid/residue_types/carbohydrates/README.txt 16931a16999 > f56a2fa8e2b24dc989ff1fd52781c0c4 ./chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/hexoses/galactoses/to4-alpha-Daup.params 16935d17002 < f56a2fa8e2b24dc989ff1fd52781c0c4 ./chemical/residue_type_sets/centroid/residue_types/carbohydrates/aldoses/hexoses/galactoses/to4-alpha-Daup.params 17466a17534 > b5fb29f160c3bacb3fb39e98347b75ad ./chemical/residue_type_sets/centroid/residue_types/carbohydrates/README.txt 17479d17546 < 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dd7dec186584d5edbcdf7ffd0a302bdb ./chemical/residue_type_sets/centroid/residue_types/l-ncaa/2.4-diaminobutyric_acid.params > c8d6ee274b4aab43997d21118e2b646b ./chemical/residue_type_sets/centroid/residue_types/l-ncaa/ornithine.params 17503d17570 < 424b40b39082e56541ff11bb5a6e3148 ./chemical/residue_type_sets/centroid/residue_types/metal_ions/FE.params 17504a17572 > 424b40b39082e56541ff11bb5a6e3148 ./chemical/residue_type_sets/centroid/residue_types/metal_ions/FE.params 17514,17521d17581 < 42c329e644cf39769c2bdaa4a3a8e1ce ./chemical/residue_type_sets/centroid/residue_types/nucleic/rna_phenix/RAD_n.params < 7a362afab617fa65d5b8b4d635937d19 ./chemical/residue_type_sets/centroid/residue_types/nucleic/rna_phenix/RAD_s.params < b1122549395fe7fe892c9d2540190841 ./chemical/residue_type_sets/centroid/residue_types/nucleic/rna_phenix/RCY_n.params < 309e9f28faff9f73954f37122a5c8cb8 ./chemical/residue_type_sets/centroid/residue_types/nucleic/rna_phenix/RCY_s.params < 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./chemical/residue_type_sets/centroid_pre_talaris2013/patches/C_methylamidated.txt < 41f77546ee1d217dd750ec79878e39e3 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/CtermProtein.txt < 1f8e3d746a69f8b154b481318d23e452 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/CtermTruncation.txt < f59e3e43a78fb01969570795e3319342 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/D_AA.txt < 3e20475ce859a6c3a7c69c4f3f104d75 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/LowerDNA.txt < 0b5198668ffa9e75626ccecd276aac7f ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/N_acetylated.txt < 342e2afe4129b2fd9d86a93db74022ef ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/NtermProtein.txt < 78facaa28083c7ebaa51edafb3086cd0 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/NtermTruncation.txt < 40e6359fa187a35a3ca81356be80bdc1 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/RepulsiveOnly_centroid.txt < 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./chemical/residue_type_sets/centroid_pre_talaris2013/patches/pro_hydroxylated_case1.txt < e2bcdb865d6782847dabbc731981c4a8 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/pro_hydroxylated_case2.txt < a05ab6da2e1a0872cddca7bcfe2e291e ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/protein_centroid_with_HA.txt < fac36687295c300c82663d2c347f9b93 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/protein_cutpoint_lower.txt < 9771394a6c9df380950e28ce353ca7da ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/protein_cutpoint_upper.txt < 0c6e349c04aa3c0f69f8c2527170d355 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/ser_phosphorylated.txt < 1c1f3edc22acd6c94e57c6ca3aa0ba94 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/thr_phosphorylated.txt < 25b2c7162faeeacf340ad3e90ed19368 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/tyr_sulfated.txt < b1ddbd7660b621921a040c14598728ec ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types.txt < 350861463c96f2a890c9b69bb140c818 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/08A.params < c0c4be3534870b6fb049189767f68337 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/08B.params < 072869e871a6095f176cf5e6b9511fc2 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/ADE.params < 065258c04c349587dca7694dd3ee7c26 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/ALA.params < 06302fed99ffa6dfeb679b43ffbd8fa0 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/ARG.params < 42472e9bd3c6f6f24075cc69646c7476 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/ASN.params < 2ef6159d9873d1ccda06561dfc682737 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/ASP.params < a68a6a674718309a2b67fd6472c930c7 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/CYS.params < 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./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/HIS_D.params < 2fffe904b9bec9422aaf5cede1e85758 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/ILE.params < b179cfd2f27a200d2f8032e8736595e5 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/LEU.params < f37fad5d692357a0cdeb52015fbf494f ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/LYS.params < 7d6c00d9b00a1099a34bfe5c5e0ee7fe ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/MET.params < 520f2488914d57810a310daa2ebcc385 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/PHE.params < 09df0d1f5a4985738675c6147848eb69 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/PRO.params < b8098c5fce9210e5f8f7d70fdfb6141b ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/SER.params < 2ae4576cfae707d6eff160449d1477f7 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/THR.params < 8ec44ff89de9daff59eb57fc6b6515f0 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/THY.params < 488490d6968c78cd89f5431acc6c995b ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/TRP.params < ce2fc69d60b5638d0d405c446df47a1b ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/TYR.params < 31792b378ba3fa084229d8fa2f6fa93f ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/VAL.params < f676d7adfcda2e2a7153abf00aabbf1b ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/VRT.params < d98c704fb2fa142a5b39aa6aa677d092 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/metal_ions/CA.params < d02c74880cc7e2dafb362e0b95e4fac7 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/metal_ions/CD.params < 424b40b39082e56541ff11bb5a6e3148 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/metal_ions/FE.params < 6a7f0db5aac8ac424bd9644ba3bb6d1d ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/metal_ions/FE2.params < 4cebda596312d2c74899a42ea3c9dc37 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/metal_ions/K.params < 9bb8789e199c8df84b17dccf7c903594 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/metal_ions/MG.params < 8090cf56c083ea8ef785ade9bbd1cbf9 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/metal_ions/MN.params < 0bb4967163eb9167f414701e78d2f129 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/metal_ions/NA.params < 5fd381ffe7fe65bef8def7fe3c79305e ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/metal_ions/ZN.params --- > 98ac1a997c915e16533d4b7026f70cac ./chemical/residue_type_sets/centroid/residue_types.txt 17605d17604 < 9320e4ad35fdd07a58eafbc7fc07dc00 ./chemical/residue_type_sets/centroid_rot/patches.txt 17608d17606 < 6882e73fac4f83b774f3be0a1423bc82 ./chemical/residue_type_sets/centroid_rot/patches/NtermProtein.txt 17609a17608 > 6882e73fac4f83b774f3be0a1423bc82 ./chemical/residue_type_sets/centroid_rot/patches/NtermProtein.txt 17612c17611 < 6fbd3e63649f55666adb56d48aa4df44 ./chemical/residue_type_sets/centroid_rot/residue_types.txt --- > 9320e4ad35fdd07a58eafbc7fc07dc00 ./chemical/residue_type_sets/centroid_rot/patches.txt 17631a17631 > 6fbd3e63649f55666adb56d48aa4df44 ./chemical/residue_type_sets/centroid_rot/residue_types.txt 17636c17636,17637 < 55b1845382635c250f67bd588a10a6cb ./chemical/residue_type_sets/coarse_rna/patches.txt --- > a416e79dd4863836f2c892c5d2df8557 ./chemical/residue_type_sets/coarse_rna/patches/coarse_rna_cutpoint_lower.txt > 4a8b7c3291fce92f9de072a9be98cf0c ./chemical/residue_type_sets/coarse_rna/patches/coarse_rna_cutpoint_upper.txt 17637a17639 > 55b1845382635c250f67bd588a10a6cb ./chemical/residue_type_sets/coarse_rna/patches.txt 17641,17643d17642 < a416e79dd4863836f2c892c5d2df8557 ./chemical/residue_type_sets/coarse_rna/patches/coarse_rna_cutpoint_lower.txt < 4a8b7c3291fce92f9de072a9be98cf0c ./chemical/residue_type_sets/coarse_rna/patches/coarse_rna_cutpoint_upper.txt < 862fa7b2dadee5d9624793a3aeb7048d ./chemical/residue_type_sets/coarse_rna/residue_types.txt 17647a17647 > 862fa7b2dadee5d9624793a3aeb7048d ./chemical/residue_type_sets/coarse_rna/residue_types.txt 17653d17652 < 8dc1e5282f555a1d2a7c4b0c93abec4b ./chemical/residue_type_sets/coarse_two_bead/patches.txt 17656c17655 < 238b018a08c7329b4453a9616a38095e ./chemical/residue_type_sets/coarse_two_bead/residue_types.txt --- > 8dc1e5282f555a1d2a7c4b0c93abec4b ./chemical/residue_type_sets/coarse_two_bead/patches.txt 17668d17666 < 5bd7dbae8ab838570531d364c3a149d0 ./chemical/residue_type_sets/coarse_two_bead/residue_types/HIS.params 17669a17668 > 5bd7dbae8ab838570531d364c3a149d0 ./chemical/residue_type_sets/coarse_two_bead/residue_types/HIS.params 17679a17679 > 238b018a08c7329b4453a9616a38095e ./chemical/residue_type_sets/coarse_two_bead/residue_types.txt 17682a17683,17784 > f8d98dc88494f2a9968f0f9a0df27415 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/exclude_pdb_component_list.txt > 279ce5706cc65d717c195fd78f0af68c ./chemical/residue_type_sets/fa_standard_05.2009_icoor/homogres_revert.sh > d0a3196e71bf0d1e1180f3205276c184 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/homogres.sh > af51a8baab6e7b35c882b376b6fa6fd4 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/merge_residue_behaviors.txt > e681afa0dbacd721b8dc0c1b8d2176a7 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/metapatches/aromatic_bromination.txt > 42840391017b658afe61f3d56dcf3be6 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/metapatches/aromatic_chlorination.txt > 0cf42ca0b5932e12798c749b5073b15a ./chemical/residue_type_sets/fa_standard_05.2009_icoor/metapatches/aromatic_ethylation.txt > a7d288d034470e58a78307fcb86b4852 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/metapatches/aromatic_fluorination.txt > f6b712f723ed3f1a75160115b05da930 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/metapatches/aromatic_hydroxylation.txt > 9bf608eeccfbf683f799f97137384fca ./chemical/residue_type_sets/fa_standard_05.2009_icoor/metapatches/aromatic_iodination.txt > e00bc5bad40e83211a9aefc2328a236a ./chemical/residue_type_sets/fa_standard_05.2009_icoor/metapatches/aromatic_methoxylation.txt > 26438c1ab876eb866593cb589b41a1a6 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/metapatches/aromatic_methylation.txt > 83f6e77a3c5edd20e15414782c9837ec ./chemical/residue_type_sets/fa_standard_05.2009_icoor/metapatches/connect.txt > 20a4ff3fedd87b270d8a0a1c25eecf49 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/metapatches/metal_connect.txt > 8f0c3af8c839cb78a82cbc3836f5b1c5 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/metapatches.txt > ab703208aa6289a8fc7bfa42eaac3d4f ./chemical/residue_type_sets/fa_standard_05.2009_icoor/patches/CtermProteinFull.txt > ab21e0453899a77726a3f4d8a50c9c43 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/patches/CtermTruncation.txt > f59e3e43a78fb01969570795e3319342 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/patches/D_AA.txt > fa2f9e1b23d3b21b43836908bd467442 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/patches/disulfide.txt > 3e20475ce859a6c3a7c69c4f3f104d75 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/patches/LowerDNA.txt > fe586e80550b55d5be360ad5a79bf2ec ./chemical/residue_type_sets/fa_standard_05.2009_icoor/patches/NtermProteinFull.txt > 981d8f1caadee531d0fce863affac6fe ./chemical/residue_type_sets/fa_standard_05.2009_icoor/patches/NtermTruncation.txt > fac36687295c300c82663d2c347f9b93 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/patches/protein_cutpoint_lower.txt > 542fc80c13e2052353b9c0509167214e ./chemical/residue_type_sets/fa_standard_05.2009_icoor/patches/protein_cutpoint_upper.txt > 26308e55ea26bd9d5d30e3e8ae5d8f3a ./chemical/residue_type_sets/fa_standard_05.2009_icoor/patches/RepulsiveOnly_fa.txt > e4357e6786d5c2eb944176549908e9c2 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/patches/SC_Fragment.txt > 105276ad64e208026244b98c739af2b2 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/patches/ShoveBB.txt > f2a352496e8e0302c161d596c08d819f ./chemical/residue_type_sets/fa_standard_05.2009_icoor/patches.txt > 447e7a42a72766086b4f4e8fc7fed919 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/patches/UpperDNA.txt > 336751b1168c360de46b2217fe8c5f3b ./chemical/residue_type_sets/fa_standard_05.2009_icoor/patches/VirtualBB.txt > 2c6ff787a3ca6b9bf12c94c456215d33 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/patches/VirtualDNAPhosphate.txt > 390dc12856e43a1738a3a09627a5f644 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/08A.params > d50f3ce32de4aa21741ca46f9c9760cc ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/08B.params > 3b9f1433e0c25c24fc69b79d5cb3f977 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/ADE.params > a1c506d884f2411a7ff76c386392b3c4 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/ALA.params > 2465941ad1dea3a6477a35971fb1938d ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/ARG.params > 881fa3418b26e35287e0e843d8166ccd ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/ASN.params > 35c47bd4e8e2ea705dbc879fa4a1cf28 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/ASP.params > 69fe24ef36d1ab44b1e83e6cb44fbf8a ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/CYS.params > 7d33509294b39b4a94cc11a2160a61cb ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/CYT.params > 6913127c15c94b4f60ebfefea86c8853 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/CYX.params > 31f144ca1ff1f1e3aece1d51202d4938 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/CYZ.params > ee134dd03c89e2592eec706ad87f5eee ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/GB_AA_PLACEHOLDER.params > 049dc8783b26f13fa1e99a87af22a2bd ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/GDP.params > 4ab83a1492b1b872c14adda2efa57419 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/GLN.params > 80a02db39f84c4fb1efd608756980b64 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/GLU.params > 774a98966b127e8e2a9b1f230fbe831b ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/GLY.params > 11a779981b3170b68cc7c1f8570deec6 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/GNP.params > 107356d673146578aadcfc0e38c02168 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/GTP.params > 00030f20055ef689e64232bc8f88acf3 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/GUA.params > 053034ebab7c9b0f19886a3c94ad38e2 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/HIS_D.params > 9103ba48db13f501052faa84d77e230e ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/HIS.params > 554a96bb6b46866fd5ee3865ab2d8301 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/ALA.params > 05833fc8201680b3501f07bbdec9932a ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/ARG.params > f08229d8da07a473f02b755579ae6a9a ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/ASN.params > 435506fffc5ef79821d341d8b3c07b91 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/ASP.params > fb2b0f9dec319178ff0c1dae1e64c1ec ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/CYS.params > 9f4f6e123334c8223e23b5ec02557ea0 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/GLN.params > a18e4a06f8f39d93da109d70130144ca ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/GLU.params > ac47bb6f21754ef9f1b371baebdfd201 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/GLY.params > 613096a682145c8e669802ce68cfee0a ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/HIS_DE.params > d4a0b8abdeb26726d7bf9bc5b00ac751 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/HIS_D.params > b94cd65828d178c087a1accc7db3cd0f ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/HIS.params > 5dd7b5569baf11d0dacba09ab520d5d8 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/ILE.params > 90de4098b3796ff02ce4e2fb15882440 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/LEU.params > ee7af4eef1ba30b09dd4c506a1f7b667 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/LYS.params > b2b23fcaf787369106be7655814fec7c ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/MET.params > 7d15703e6aa7895eebdaf92b71bbeb50 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/PHE.params > 13af152f9fe52b90f142c7c1c9eb725c ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/PRO.params > 1bda08ef1cb92f8cb999284b72dfbd1e ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/SER.params > 410929db6d884fd0e46f016b6563f521 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/THR.params > 3edbba131623a474404dc8606130dc3c ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/TRP.params > 6299f729ca0567287519bafe7b2de8bd ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS.txt > aab48b68ba01ee3e1c3f53df0d106f2a ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/TYR.params > b65c8eb0dd02f62356d61cd2abf762d2 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types_HOMOGENEOUS/VAL.params > b22f253a5d3930a8002ace8c5de77307 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/ILE.params > a79f6115c1a8b339ec91c825ad4c6313 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/LEU.params > 062163e438a68b6800b8561b6d303974 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/LYS.params > f56f36ff71273be08388ee738684aad7 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/LYX.params > d98c704fb2fa142a5b39aa6aa677d092 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/metal_ions/CA.params > 6a7f0db5aac8ac424bd9644ba3bb6d1d ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/metal_ions/FE2.params > 424b40b39082e56541ff11bb5a6e3148 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/metal_ions/FE.params > 4cebda596312d2c74899a42ea3c9dc37 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/metal_ions/K.params > 9bb8789e199c8df84b17dccf7c903594 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/metal_ions/MG.params > 8090cf56c083ea8ef785ade9bbd1cbf9 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/metal_ions/MN.params > 0bb4967163eb9167f414701e78d2f129 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/metal_ions/NA.params > b072addedc2a9ffa1f6efa0338b32671 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/metal_ions/ZN.params > aede3a663586f02af9b2ef2035a7ebca ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/MET.params > 5c7c65d26e2a4f8339367dea14377e0c ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/PHE.params > 183bdce57cbcf74ef6932ae5ebe03c76 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/PRO.params > 3af090589bc595ba0a3b7163fd224982 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/SER.params > 0a02f2045a7e81696a54bfb9b8a780bc ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/SUCK.params > d713f77e59d0f25fba38e11e7df1c6eb ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/THR.params > 40b54f48f78a1421b6a16dd0572b2da8 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/THY.params > 7370677253f34f8f68e228fe17ad0165 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/TP3.params > ac6ea73705ea5702479aa0a852e91f38 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/TP5.params > 0703f0dbd2131bf07de6aab496f767f2 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/TRP.params > 87d62d23e8dddbcfd779a015944aafd6 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types.txt > 61f3f749fab25be3fa10e0a5636a0211 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/TYR.params > 3b84c966beb53661ab1ef02fd5f8f178 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/VAL.params > 1797f24d031d7ec7331b350b48b25d1b ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/VRT1.params > 94a3f6d337bd3c8a4c7e4ed24be6805a ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/VRT.params 17685d17786 < d9b33ad01ffc1b15e02c3455ebb97410 ./chemical/residue_type_sets/fa_standard/metapatches.txt 17698,17731c17799 < 4e3c74aa7473f19472207aa35d53b2ad ./chemical/residue_type_sets/fa_standard/patches.txt < bdb4105729e29322a8820f6695c4090a ./chemical/residue_type_sets/fa_standard/patches.txt.slim < a550ed572bda7f7f7d2df196132651c6 ./chemical/residue_type_sets/fa_standard/patches/AcetylatedPeptoidNterm.txt < cdf63b349b63e3da612ca92e33498a69 ./chemical/residue_type_sets/fa_standard/patches/AcetylatedProteinNterm.txt < c7e446e38d20fa9c0b5f759cf62f2a4b ./chemical/residue_type_sets/fa_standard/patches/AcetylatedProteinNtermConnection.txt < 0ade27c069a53805c5a0d22617a0f4b8 ./chemical/residue_type_sets/fa_standard/patches/C_methylamidated.txt < da934057d3d71ee954afac5045ed4566 ./chemical/residue_type_sets/fa_standard/patches/CtermPeptoidFull.txt < 613f5b60a04acf7c384a83c45eb9b3a0 ./chemical/residue_type_sets/fa_standard/patches/CtermProteinFull.txt < 6aafbc3870935b75fc99aeca34c7b9cb ./chemical/residue_type_sets/fa_standard/patches/CtermTruncation.txt < 5024dde0b45cd7965bbcc03c00b59971 ./chemical/residue_type_sets/fa_standard/patches/Cterm_amidation.txt < aa08341bf9528937a60fad1dfbdc89b2 ./chemical/residue_type_sets/fa_standard/patches/D_AA.txt < de7d462cfafcbcea12666e772db5c9c2 ./chemical/residue_type_sets/fa_standard/patches/DimethylatedProteinCterm.txt < 2930cf006d6876f3fed5c6a0616e78a0 ./chemical/residue_type_sets/fa_standard/patches/MethylatedProteinCterm.txt < 85eff15e44054bb049c755304e801327 ./chemical/residue_type_sets/fa_standard/patches/N_acetylated.txt < f836126e2bf30274a2a7584124586a8c ./chemical/residue_type_sets/fa_standard/patches/N_formylated.txt < 43a8f7b83b6c5605e9278d5c83cd0088 ./chemical/residue_type_sets/fa_standard/patches/N_methylation.txt < bac9fc639ef0b2e303e78aec734996b9 ./chemical/residue_type_sets/fa_standard/patches/Nterm2_Oxobutrylation.txt < b3c2d332a81068b7285fab02d5fbf021 ./chemical/residue_type_sets/fa_standard/patches/NtermCtermDipeptoid.txt < 2f450896c3ff78702dcea49b7da662d3 ./chemical/residue_type_sets/fa_standard/patches/NtermPeptoidFull.txt < 3b93d9b05e1da4c14f90596baf4fe9d3 ./chemical/residue_type_sets/fa_standard/patches/NtermProteinFull.txt < 3ed8fbd76e1b0cabe04f0cb35ad1b5dc ./chemical/residue_type_sets/fa_standard/patches/NtermProteinMethylated.txt < 466d886c3f5271f906ed1f22c4a2ef86 ./chemical/residue_type_sets/fa_standard/patches/NtermTruncation.txt < 2f605af98240a574c889973008eee0eb ./chemical/residue_type_sets/fa_standard/patches/PtermProteinFull.txt < 6b05493fcaeb9c88ee2c9a55b2ef0142 ./chemical/residue_type_sets/fa_standard/patches/RPEPTOID.txt < 94337e89066eb2b1c319c8be9533e555 ./chemical/residue_type_sets/fa_standard/patches/ReplsBB.txt < be62dfcd5b902238e7c6e98eeef65016 ./chemical/residue_type_sets/fa_standard/patches/RepulsiveOnly_fa.txt < e4357e6786d5c2eb944176549908e9c2 ./chemical/residue_type_sets/fa_standard/patches/SC_Fragment.txt < 27309023fcd78c81f5db444eb8c147ed ./chemical/residue_type_sets/fa_standard/patches/ShoveBB.txt < f5aef0106cd04a3493571d8ab2e1148e ./chemical/residue_type_sets/fa_standard/patches/SidechainConjugation.txt < 8c4acc378986d6613aabc242773c22ad ./chemical/residue_type_sets/fa_standard/patches/SpecialRotamer.txt < 45c15f384a8a50fe71ac80adbbcc3c5e ./chemical/residue_type_sets/fa_standard/patches/VirtualBB.txt < 13986000048ac1bd1524cd939b6b3a63 ./chemical/residue_type_sets/fa_standard/patches/VirtualNterm.txt < 2ea3eebe0b4a46ecd2c2bd449f3c146d ./chemical/residue_type_sets/fa_standard/patches/VirtualProteinSideChain.txt < 54446d1beb208506bf4ef0278370fc44 ./chemical/residue_type_sets/fa_standard/patches/VirtualResidue.txt --- > d9b33ad01ffc1b15e02c3455ebb97410 ./chemical/residue_type_sets/fa_standard/metapatches.txt 17733a17802,17806 > a550ed572bda7f7f7d2df196132651c6 ./chemical/residue_type_sets/fa_standard/patches/AcetylatedPeptoidNterm.txt > c7e446e38d20fa9c0b5f759cf62f2a4b ./chemical/residue_type_sets/fa_standard/patches/AcetylatedProteinNtermConnection.txt > cdf63b349b63e3da612ca92e33498a69 ./chemical/residue_type_sets/fa_standard/patches/AcetylatedProteinNterm.txt > 37be50671955a28315a792deab9097b6 ./chemical/residue_type_sets/fa_standard/patches/branching/aryl-C-conjugated.txt > d39c0db1d2e5d73840d41997f1d8fd4d ./chemical/residue_type_sets/fa_standard/patches/branching/aryl-O-conjugated.txt 17738,17740d17810 < 1f3dbe99a9a0bf1dd81f9602c1a75957 ./chemical/residue_type_sets/fa_standard/patches/branching/S-linked_conjugation.txt < 37be50671955a28315a792deab9097b6 ./chemical/residue_type_sets/fa_standard/patches/branching/aryl-C-conjugated.txt < d39c0db1d2e5d73840d41997f1d8fd4d ./chemical/residue_type_sets/fa_standard/patches/branching/aryl-O-conjugated.txt 17743a17814 > 1f3dbe99a9a0bf1dd81f9602c1a75957 ./chemical/residue_type_sets/fa_standard/patches/branching/S-linked_conjugation.txt 17775a17847,17849 > ea3694199b1bbf038bffa028b0ebdc79 ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/cutpoint_lower.txt > 5715cbe31fe27c5be58b10ac94427a7e ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/cutpoint_upper.txt > ed014fe18b5d6c3e97f8a04fff123c42 ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/lower_terminus.txt 17777,17779d17850 < b8c2ae536dcc818c25d57a92e878d689 ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/N-R-3'-hydroxybutyryl-3-amination.txt < 0b0732ece9e12bdfcdf7299460f7b493 ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/N-acetyl-2-amination.txt < 2fbc1b26c441f870189a5ad4c8edcc41 ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/N-linked_glycosylation.txt 17783a17855,17857 > 0b0732ece9e12bdfcdf7299460f7b493 ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/N-acetyl-2-amination.txt > 2fbc1b26c441f870189a5ad4c8edcc41 ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/N-linked_glycosylation.txt > b8c2ae536dcc818c25d57a92e878d689 ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/N-R-3'-hydroxybutyryl-3-amination.txt 17795,17797d17868 < ea3694199b1bbf038bffa028b0ebdc79 ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/cutpoint_lower.txt < 5715cbe31fe27c5be58b10ac94427a7e ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/cutpoint_upper.txt < ed014fe18b5d6c3e97f8a04fff123c42 ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/lower_terminus.txt 17799a17871 > 0ade27c069a53805c5a0d22617a0f4b8 ./chemical/residue_type_sets/fa_standard/patches/C_methylamidated.txt 17800a17873,17876 > 5024dde0b45cd7965bbcc03c00b59971 ./chemical/residue_type_sets/fa_standard/patches/Cterm_amidation.txt > da934057d3d71ee954afac5045ed4566 ./chemical/residue_type_sets/fa_standard/patches/CtermPeptoidFull.txt > 613f5b60a04acf7c384a83c45eb9b3a0 ./chemical/residue_type_sets/fa_standard/patches/CtermProteinFull.txt > 6aafbc3870935b75fc99aeca34c7b9cb ./chemical/residue_type_sets/fa_standard/patches/CtermTruncation.txt 17801a17878,17879 > aa08341bf9528937a60fad1dfbdc89b2 ./chemical/residue_type_sets/fa_standard/patches/D_AA.txt > de7d462cfafcbcea12666e772db5c9c2 ./chemical/residue_type_sets/fa_standard/patches/DimethylatedProteinCterm.txt 17811a17890,17899 > 2930cf006d6876f3fed5c6a0616e78a0 ./chemical/residue_type_sets/fa_standard/patches/MethylatedProteinCterm.txt > 85eff15e44054bb049c755304e801327 ./chemical/residue_type_sets/fa_standard/patches/N_acetylated.txt > f836126e2bf30274a2a7584124586a8c ./chemical/residue_type_sets/fa_standard/patches/N_formylated.txt > 43a8f7b83b6c5605e9278d5c83cd0088 ./chemical/residue_type_sets/fa_standard/patches/N_methylation.txt > bac9fc639ef0b2e303e78aec734996b9 ./chemical/residue_type_sets/fa_standard/patches/Nterm2_Oxobutrylation.txt > b3c2d332a81068b7285fab02d5fbf021 ./chemical/residue_type_sets/fa_standard/patches/NtermCtermDipeptoid.txt > 2f450896c3ff78702dcea49b7da662d3 ./chemical/residue_type_sets/fa_standard/patches/NtermPeptoidFull.txt > 3b93d9b05e1da4c14f90596baf4fe9d3 ./chemical/residue_type_sets/fa_standard/patches/NtermProteinFull.txt > 3ed8fbd76e1b0cabe04f0cb35ad1b5dc ./chemical/residue_type_sets/fa_standard/patches/NtermProteinMethylated.txt > 466d886c3f5271f906ed1f22c4a2ef86 ./chemical/residue_type_sets/fa_standard/patches/NtermTruncation.txt 17816,17818d17903 < 3e20475ce859a6c3a7c69c4f3f104d75 ./chemical/residue_type_sets/fa_standard/patches/nucleic/dna/LowerDNA.txt < 6ff0ad53ec262dcde7bfb22d80d1d4b6 ./chemical/residue_type_sets/fa_standard/patches/nucleic/dna/UpperDNA.txt < 1f9532b3c3a808f57eb916b81f066154 ./chemical/residue_type_sets/fa_standard/patches/nucleic/dna/VirtualDNAPhosphate.txt 17820a17906 > 3e20475ce859a6c3a7c69c4f3f104d75 ./chemical/residue_type_sets/fa_standard/patches/nucleic/dna/LowerDNA.txt 17821a17908,17909 > 6ff0ad53ec262dcde7bfb22d80d1d4b6 ./chemical/residue_type_sets/fa_standard/patches/nucleic/dna/UpperDNA.txt > 1f9532b3c3a808f57eb916b81f066154 ./chemical/residue_type_sets/fa_standard/patches/nucleic/dna/VirtualDNAPhosphate.txt 17839d17926 < 39ff7eecdaf3da00769593252cae3485 ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/L_RNA.txt 17841a17929 > 39ff7eecdaf3da00769593252cae3485 ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/L_RNA.txt 17845a17934,17935 > a253003e9d3de5855dc88f27cf990bc5 ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/rna_cutpoint_lower.txt > cd568d08b54dfc0069d2d08a3cdca7bb ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/rna_cutpoint_upper.txt 17848,17849d17937 < c808b7f012d60541e61717f76e44711b ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/VirtualBase.txt < b2e16b85718e681c64fe81f223447291 ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/VirtualBaseHeavyAtom.txt 17850a17939,17940 > b2e16b85718e681c64fe81f223447291 ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/VirtualBaseHeavyAtom.txt > c808b7f012d60541e61717f76e44711b ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/VirtualBase.txt 17853,17854d17942 < 6ca81713bd8dce9f2445346e387ab031 ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/Virtual_RNA_Residue.txt < bd375384b53911262e0479660df0b8a0 ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/Virtual_RNA_Residue_Exclude_Phosphate.txt 17856,17857c17944,17945 < a253003e9d3de5855dc88f27cf990bc5 ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/rna_cutpoint_lower.txt < cd568d08b54dfc0069d2d08a3cdca7bb ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/rna_cutpoint_upper.txt --- > bd375384b53911262e0479660df0b8a0 ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/Virtual_RNA_Residue_Exclude_Phosphate.txt > 6ca81713bd8dce9f2445346e387ab031 ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/Virtual_RNA_Residue.txt 17863a17952,17956 > 2f605af98240a574c889973008eee0eb ./chemical/residue_type_sets/fa_standard/patches/PtermProteinFull.txt > 94337e89066eb2b1c319c8be9533e555 ./chemical/residue_type_sets/fa_standard/patches/ReplsBB.txt > be62dfcd5b902238e7c6e98eeef65016 ./chemical/residue_type_sets/fa_standard/patches/RepulsiveOnly_fa.txt > 6b05493fcaeb9c88ee2c9a55b2ef0142 ./chemical/residue_type_sets/fa_standard/patches/RPEPTOID.txt > e4357e6786d5c2eb944176549908e9c2 ./chemical/residue_type_sets/fa_standard/patches/SC_Fragment.txt 17864a17958,17960 > 27309023fcd78c81f5db444eb8c147ed ./chemical/residue_type_sets/fa_standard/patches/ShoveBB.txt > f5aef0106cd04a3493571d8ab2e1148e ./chemical/residue_type_sets/fa_standard/patches/SidechainConjugation.txt > 8c4acc378986d6613aabc242773c22ad ./chemical/residue_type_sets/fa_standard/patches/SpecialRotamer.txt 17883a17980,17981 > 4e3c74aa7473f19472207aa35d53b2ad ./chemical/residue_type_sets/fa_standard/patches.txt > bdb4105729e29322a8820f6695c4090a ./chemical/residue_type_sets/fa_standard/patches.txt.slim 17886a17985,17988 > 45c15f384a8a50fe71ac80adbbcc3c5e ./chemical/residue_type_sets/fa_standard/patches/VirtualBB.txt > 13986000048ac1bd1524cd939b6b3a63 ./chemical/residue_type_sets/fa_standard/patches/VirtualNterm.txt > 2ea3eebe0b4a46ecd2c2bd449f3c146d ./chemical/residue_type_sets/fa_standard/patches/VirtualProteinSideChain.txt > 54446d1beb208506bf4ef0278370fc44 ./chemical/residue_type_sets/fa_standard/patches/VirtualResidue.txt 17888,17889c17990,18312 < 617e60b3f0d6483e517e6bffbc4ae989 ./chemical/residue_type_sets/fa_standard/residue_types.txt < 9226c98da695f0afb3760dcc56b1d563 ./chemical/residue_type_sets/fa_standard/residue_types.txt.slim --- > 89ad5f6e4167a1ad46b75d769275c235 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/exclude_pdb_component_list.txt > af51a8baab6e7b35c882b376b6fa6fd4 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/merge_residue_behaviors.txt > e681afa0dbacd721b8dc0c1b8d2176a7 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches/aromatic_bromination.txt > 42840391017b658afe61f3d56dcf3be6 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches/aromatic_chlorination.txt > 0cf42ca0b5932e12798c749b5073b15a ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches/aromatic_ethylation.txt > a7d288d034470e58a78307fcb86b4852 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches/aromatic_fluorination.txt > f6b712f723ed3f1a75160115b05da930 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches/aromatic_hydroxylation.txt > 9bf608eeccfbf683f799f97137384fca ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches/aromatic_iodination.txt > e00bc5bad40e83211a9aefc2328a236a ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches/aromatic_methoxylation.txt > 26438c1ab876eb866593cb589b41a1a6 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches/aromatic_methylation.txt > 83f6e77a3c5edd20e15414782c9837ec ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches/connect.txt > 20a4ff3fedd87b270d8a0a1c25eecf49 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches/metal_connect.txt > 8f0c3af8c839cb78a82cbc3836f5b1c5 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches.txt > aa4b88a4b2cf6a35d30ff5ca37b9434a ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/AcetylatedProteinNterm.txt > 04b6e731727e44b7a83f9e39e4ad3a8a ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/2-amination.txt > 53346d6171a483ecd6d68ccec71b7e17 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/2-branch.txt > 3dc1663738124673f73c12f4261f840f ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/3-amination.txt > 89f8031e01e133bbb06adbb0e0876407 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/3-branch.txt > 96c201f6d8462ef15f0b843cea4dd2a5 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/3-methylation.txt > 7b03ba2c9b3d574cb2b189f7a0ad2d34 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/5-acetylation.txt > 2af3dd9892297077c21b0cad6c2980f5 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/6-branch.txt > ea3694199b1bbf038bffa028b0ebdc79 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/cutpoint_lower.txt > e9165dd14cdfc07596083bb9954e96cf ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/cutpoint_upper.txt > 26c3c26aed6ce8c7baa1a87964ff0668 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/lower_terminus.txt > 71cb0b314e171d2d2df0e3471dd46f8e ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/Me_glycoside.txt > e1d7c7dbaef29af6ddd50891ffdd9b96 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/N-acetyl-2-amination.txt > 7e3ead2954cd6470bca929e23a59e243 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/N-linked_glycosylation.txt > 2aa1bc5eb5fff5205caf0b61158bc100 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/N-R-3'-hydroxybutyryl-3-amination.txt > e4b31f8989a8327a585a396728b6768a ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/upper_terminus.txt > 6de6834086c89fd4331caf8732e852ea ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/C_methylamidated.txt > f377428c322c7fd0b2f12ee77b39a192 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/Cterm_amidation.txt > 105dfd62dae82ed0573492af7f9d0db4 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/CtermProteinFull.txt > 4ee956873d4090440195c01d36452b33 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/CtermTruncation.txt > 9b10a58683247f2062fbff7910f64e1d ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/cys_acetylated.txt > f59e3e43a78fb01969570795e3319342 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/D_AA.txt > fa2f9e1b23d3b21b43836908bd467442 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/disulfide.txt > 50e94be80aba8a6a8278a62eaa368f87 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/dna_cutpoint_lower.txt > bfa09fb1e587f229ae48fa278da76436 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/dna_cutpoint_upper.txt > 3bd284c08f3624cab7f70e078a7e38f4 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/glu_carboxylated.txt > 1020b7f207ccb6fd126b14ce4c59a5df ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/hbs_post.txt > 892f45cda809da6e853b877ffa790aab ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/hbs_pre.txt > bd8a293c16accf401911e5bf231643ff ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/his_methylated.txt > 3e20475ce859a6c3a7c69c4f3f104d75 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5c3f31a5dcfc5ad7b400d6ae4ea0c836 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/peptoids/02C.params > 079898a60bb82113ba62edfdd4ba03ac ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/peptoids/03C.params > 51a35c2aef7d671b95b58a317e180692 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/protonation_states/ASP_P1.params > d949ae81e23f6a4de6a2d5c7c2d1b713 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/protonation_states/ASP_P2.params > 4ab4bacceefa2970bfac8b0f07d6100e ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/protonation_states/GLU_P1.params > 194a754ef2a1d2e05c959b4a964a95cd ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/protonation_states/GLU_P2.params > bc200c80fd08c0abf9cdb6ac915f3bad ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/protonation_states/HIS_P.params > 528c0a75d8f4841402c332f8e32e72f3 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/protonation_states/LYS_D.params > 1aca428f5a6548627fd4ac3ace9f0fd1 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/protonation_states/TYR_D.params > e221a0da69523448f6a2620ca1353ba4 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/ptm-caa/PTR.params > 3056d8272f7901ee0a3f93f2082fd257 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/ptm-caa/SEP.params > 52db4b0046ede694a4667cc1fea8d1f4 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/ptm-caa/TPO.params > ee134dd03c89e2592eec706ad87f5eee ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/rosetta_specific/GB_AA_PLACEHOLDER.params > 0a02f2045a7e81696a54bfb9b8a780bc ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/rosetta_specific/SUCK.params > 5724511a34f0e93af5b007dcfbf24cbf ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/rosetta_specific/VRT1.params > f676d7adfcda2e2a7153abf00aabbf1b ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/rosetta_specific/VRT.params > 85667ff04aeda6c724497d2aef6ea733 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/sidechain_conjugation/CYX.params > 5f9ea9f4efff8b5dcf5d670dab5de03f ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/sidechain_conjugation/LYX.params > 6987abb0c0dec920acd09d023ee22d1b ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/spin_labels/R1A.params > c88372fa083b7629fdfec51a4b00a8bd ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/spin_labels/R1A_rotamers_nonclashing_moe_saved.pdb > b5181af4da9329f2124aa8996d24e2ff ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/staple/08A.params > 438574548e74c605104d16f2b6e730c2 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/staple/08B.params > 0c255188fb04306cbf0e7e76f60ad02d ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types.txt > 9226c98da695f0afb3760dcc56b1d563 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types.txt.slim > 40e9a4c3cc0605b4a1809491150cb0c9 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/water/TP3.params > ca5361ba09173c67679e58818546d16c ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/water/TP5.params 18046a18470 > f56a2fa8e2b24dc989ff1fd52781c0c4 ./chemical/residue_type_sets/fa_standard/residue_types/carbohydrates/aldoses/hexoses/galactoses/to4-alpha-Daup.params 18050d18473 < f56a2fa8e2b24dc989ff1fd52781c0c4 ./chemical/residue_type_sets/fa_standard/residue_types/carbohydrates/aldoses/hexoses/galactoses/to4-alpha-Daup.params 18581a19005,19007 > cf8df333f33550557dc074fc99e341f6 ./chemical/residue_type_sets/fa_standard/residue_types/coenzymes/flavin_mononucleotide.params > 213552333425ddb100b93bb04ddf613f ./chemical/residue_type_sets/fa_standard/residue_types/coenzymes/flavin_oxidized.params > 391c8e9aa2c5b7938614015023836bfd ./chemical/residue_type_sets/fa_standard/residue_types/coenzymes/flavin_reduced.params 18586,18588d19011 < cf8df333f33550557dc074fc99e341f6 ./chemical/residue_type_sets/fa_standard/residue_types/coenzymes/flavin_mononucleotide.params < 213552333425ddb100b93bb04ddf613f ./chemical/residue_type_sets/fa_standard/residue_types/coenzymes/flavin_oxidized.params < 391c8e9aa2c5b7938614015023836bfd ./chemical/residue_type_sets/fa_standard/residue_types/coenzymes/flavin_reduced.params 18639d19061 < 4922cbe9d71a9b9dfe670aee80455ae5 ./chemical/residue_type_sets/fa_standard/residue_types/l-caa/HIS.params 18640a19063 > 4922cbe9d71a9b9dfe670aee80455ae5 ./chemical/residue_type_sets/fa_standard/residue_types/l-caa/HIS.params 18651a19075,19083 > ad15923a4c2886c34e5c4215dc7a372f ./chemical/residue_type_sets/fa_standard/residue_types/lipids/choline.params > fb4092d84f750fc056a6abb792529e96 ./chemical/residue_type_sets/fa_standard/residue_types/lipids/glycerol-3-phosphate.params > 092f63f5d74eeecbbb33ab58856214b9 ./chemical/residue_type_sets/fa_standard/residue_types/lipids/linoleate.params > f14c4bb9f146247510a5e7f05701db16 ./chemical/residue_type_sets/fa_standard/residue_types/lipids/nBuOH.params > 0f202a52cc80d6acc884f4e9e542a25d ./chemical/residue_type_sets/fa_standard/residue_types/lipids/oleate.params > b02c1020d5b80bbebbfba5b1e67d50fa ./chemical/residue_type_sets/fa_standard/residue_types/lipids/ONonOMe.params > 4faad7ad747e1a7a9d6995094458590b ./chemical/residue_type_sets/fa_standard/residue_types/lipids/palmitate.params > 54bcc5f2f47b2c549381c34483ba06f0 ./chemical/residue_type_sets/fa_standard/residue_types/lipids/README.txt > b1a9716910a98037a23030054dc5e4f2 ./chemical/residue_type_sets/fa_standard/residue_types/lipids/sphingosine.params 18655a19088,19090 > 9053b26231e12428216284dfe969161f ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/2.3-diaminopropionic_acid.params > 01392ad11808669c0671d15545527a4a ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/2.4-diaminobutyric_acid.params > 3308aa2a054af43d2d300d09b0eec9be ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/2.4-dimethyl-phenylalanine.params 18662d19096 < 30dd80d8f424a25d09d73e8504c4352a ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/2-amino-octanoic_acid.params 18663a19098 > 30dd80d8f424a25d09d73e8504c4352a ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/2-amino-octanoic_acid.params 18668,18671d19102 < 9053b26231e12428216284dfe969161f ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/2.3-diaminopropionic_acid.params < 01392ad11808669c0671d15545527a4a ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/2.4-diaminobutyric_acid.params < 3308aa2a054af43d2d300d09b0eec9be ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/2.4-dimethyl-phenylalanine.params < d4b7c0960cca1330cbd221ed7ad47fa8 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/3-amino-tyrosine.params 18672a19104 > d4b7c0960cca1330cbd221ed7ad47fa8 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/3-amino-tyrosine.params 18678a19111,19114 > ee926c5461b4842174c56f4131c1ef9b ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/4.5-dehydro-leucine.params > e6cfa8975eeb6f1b42ce1f020fcb0899 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/4.5-dehydro-lysine.params > a78067096ef79338ac300d3eef7b39d4 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/4.5-dihydroxy-isoleucine.params > b52eea42e0eb0a958144b56153ed0bfa ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/4-aminomethyl-phenylalanine.params 18682d19117 < b52eea42e0eb0a958144b56153ed0bfa ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/4-aminomethyl-phenylalanine.params 18689a19125 > f42fa1809b6e917934b4c4b77da6ca46 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/4J5.params 18695,18698d19130 < ee926c5461b4842174c56f4131c1ef9b ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/4.5-dehydro-leucine.params < e6cfa8975eeb6f1b42ce1f020fcb0899 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/4.5-dehydro-lysine.params < a78067096ef79338ac300d3eef7b39d4 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/4.5-dihydroxy-isoleucine.params < f42fa1809b6e917934b4c4b77da6ca46 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/4J5.params 18713,18733d19144 < 5ea9bfe4d3f5aa6e533d209b6a14709c ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/APA.params < 728d92bb067b125c829a00d223e3da7a ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/BCS.params < ec38398c32a72e96f811cf92be2e6121 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/BZP.params < 0f93d3a7652c11d699eb24564b5c0798 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/HIP.params < a57fd4929ecb323a467d3812f585ca00 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/HLU.params < f43e9d6cffb31368ad994ae9dc384c05 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/HP2.params < b98e6b205934b9d82f4524d648e9bef4 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/HPR.params < 9cdc0c4b993ed5cf66445a714e67f23f ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/HTY.params < 2a079a47aac025e48e951babad9b4cec ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/MPA.params < 99fda3714c7f5d6eaa5393e80c707a5f ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/MPH.params < 1ae7f46be8904a3122db8141bca00fbc ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/MTP.params < 33b556c19aee85d9d8bbb454c9f4dbba ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/NLU.params < 4bc6085dec444126d3f9d3635b4d9154 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/NVL.params < 8e7e0f188cb6dba92a5571f9608f66eb ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/S56.params < 86a9e0e0b648ee44c427888bc9ef77cc ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/SAL.params < 67fb317002603129d63a01b57ffac2eb ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/TES.params < 6be13b455c21cf77e05a49c723ba7a70 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/V01.params < 2187a1fb137a61d3a665b73b0d20dbf2 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/V02.params < 14d55955b1d30ecaf8751e95b41cb9f0 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/V03.params < 1265c23cee287ffe49201c5c29cc1c24 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/V04.params < d7657b376889b74a65d2f2acc03463dc ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/YPN.params 18736d19146 < 5a681851af3a0925670ca928e22c0c79 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/alpha-amino-glycine.params 18737a19148 > 5a681851af3a0925670ca928e22c0c79 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/alpha-amino-glycine.params 18746a19158,19159 > 5ea9bfe4d3f5aa6e533d209b6a14709c ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/APA.params > 728d92bb067b125c829a00d223e3da7a ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/BCS.params 18749a19163 > 5f7eda74614ade270c8401935e8c0200 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/beta.beta-diphenyl-alanine.params 18756c19170 < 5f7eda74614ade270c8401935e8c0200 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/beta.beta-diphenyl-alanine.params --- > ec38398c32a72e96f811cf92be2e6121 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/BZP.params 18763a19178,19179 > 0f93d3a7652c11d699eb24564b5c0798 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/HIP.params > a57fd4929ecb323a467d3812f585ca00 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/HLU.params 18766a19183,19188 > f43e9d6cffb31368ad994ae9dc384c05 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/HP2.params > b98e6b205934b9d82f4524d648e9bef4 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/HPR.params > 9cdc0c4b993ed5cf66445a714e67f23f ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/HTY.params > 2a079a47aac025e48e951babad9b4cec ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/MPA.params > 99fda3714c7f5d6eaa5393e80c707a5f ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/MPH.params > 1ae7f46be8904a3122db8141bca00fbc ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/MTP.params 18767a19190,19191 > 33b556c19aee85d9d8bbb454c9f4dbba ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/NLU.params > 4bc6085dec444126d3f9d3635b4d9154 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/NVL.params 18770d19193 < 791a6f96322b3be6d59867b545d0ebf5 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/phenyl-serine.params 18771a19195,19197 > 791a6f96322b3be6d59867b545d0ebf5 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/phenyl-serine.params > 8e7e0f188cb6dba92a5571f9608f66eb ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/S56.params > 86a9e0e0b648ee44c427888bc9ef77cc ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/SAL.params 18774a19201 > 67fb317002603129d63a01b57ffac2eb ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/TES.params 18776d19202 < e22ffbe78704a1de725eadccbdfc37e4 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/trifluoro-leucine.params 18778,18786c19204,19209 < b02c1020d5b80bbebbfba5b1e67d50fa ./chemical/residue_type_sets/fa_standard/residue_types/lipids/ONonOMe.params < 54bcc5f2f47b2c549381c34483ba06f0 ./chemical/residue_type_sets/fa_standard/residue_types/lipids/README.txt < ad15923a4c2886c34e5c4215dc7a372f ./chemical/residue_type_sets/fa_standard/residue_types/lipids/choline.params < fb4092d84f750fc056a6abb792529e96 ./chemical/residue_type_sets/fa_standard/residue_types/lipids/glycerol-3-phosphate.params < 092f63f5d74eeecbbb33ab58856214b9 ./chemical/residue_type_sets/fa_standard/residue_types/lipids/linoleate.params < f14c4bb9f146247510a5e7f05701db16 ./chemical/residue_type_sets/fa_standard/residue_types/lipids/nBuOH.params < 0f202a52cc80d6acc884f4e9e542a25d ./chemical/residue_type_sets/fa_standard/residue_types/lipids/oleate.params < 4faad7ad747e1a7a9d6995094458590b ./chemical/residue_type_sets/fa_standard/residue_types/lipids/palmitate.params < b1a9716910a98037a23030054dc5e4f2 ./chemical/residue_type_sets/fa_standard/residue_types/lipids/sphingosine.params --- > e22ffbe78704a1de725eadccbdfc37e4 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/trifluoro-leucine.params > 6be13b455c21cf77e05a49c723ba7a70 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/V01.params > 2187a1fb137a61d3a665b73b0d20dbf2 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/V02.params > 14d55955b1d30ecaf8751e95b41cb9f0 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/V03.params > 1265c23cee287ffe49201c5c29cc1c24 ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/V04.params > d7657b376889b74a65d2f2acc03463dc ./chemical/residue_type_sets/fa_standard/residue_types/l-ncaa/YPN.params 18796d19218 < a97c7e4b5304db59bad0963e69796db1 ./chemical/residue_type_sets/fa_standard/residue_types/metal_ions/FE.params 18797a19220 > a97c7e4b5304db59bad0963e69796db1 ./chemical/residue_type_sets/fa_standard/residue_types/metal_ions/FE.params 18807d19229 < 3b9383bb4e7d1c2f505975dd14397bbc ./chemical/residue_type_sets/fa_standard/residue_types/mineral_surface/HYD.params 18808a19231 > 3b9383bb4e7d1c2f505975dd14397bbc ./chemical/residue_type_sets/fa_standard/residue_types/mineral_surface/HYD.params 18810a19234 > d79829acd471b2e4d3c315377c36778c ./chemical/residue_type_sets/fa_standard/residue_types/mineral_surface/Oice.params 18813d19236 < d79829acd471b2e4d3c315377c36778c ./chemical/residue_type_sets/fa_standard/residue_types/mineral_surface/Oice.params 18823d19245 < 10117413470514622f954ecc83c0c14b ./chemical/residue_type_sets/fa_standard/residue_types/nucleic/dna/THY.params 18824a19247 > 10117413470514622f954ecc83c0c14b ./chemical/residue_type_sets/fa_standard/residue_types/nucleic/dna/THY.params 18931,18938d19353 < d8153f3f5a91b95ed336eb871fceb45f 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./chemical/residue_type_sets/fa_standard/residue_types/nucleic/rna_phenix/RAD_n.params > 201d365bfff212b69e7354b692378c47 ./chemical/residue_type_sets/fa_standard/residue_types/nucleic/rna_phenix/RAD_s.params > 39d7a286521b987fccc4ea44ec825ea3 ./chemical/residue_type_sets/fa_standard/residue_types/nucleic/rna_phenix/RCY_n.params > 3e27b084309d8b75cab99329409d1b00 ./chemical/residue_type_sets/fa_standard/residue_types/nucleic/rna_phenix/RCY_s.params > 1ebf80dd8135c12bb0787fcbc5552a7b ./chemical/residue_type_sets/fa_standard/residue_types/nucleic/rna_phenix/RGU_n.params > 1617c4325d11a081a6a37e2937dda12c ./chemical/residue_type_sets/fa_standard/residue_types/nucleic/rna_phenix/RGU_s.params > 6b861c2b733222879ce99d38817b98bd ./chemical/residue_type_sets/fa_standard/residue_types/nucleic/rna_phenix/URA_n.params > 4d7dfd7d6ba919a5dd93dd9805212b49 ./chemical/residue_type_sets/fa_standard/residue_types/nucleic/rna_phenix/URA_s.params 19394d19816 < da4bed1aeba3a6b825cce4148d9b4260 ./chemical/residue_type_sets/fa_standard/residue_types/rosetta_specific/VRT.params 19396a19819 > da4bed1aeba3a6b825cce4148d9b4260 ./chemical/residue_type_sets/fa_standard/residue_types/rosetta_specific/VRT.params 19411d19833 < fe1ed39fcc17ac7ddc7bb08aef6eb835 ./chemical/residue_type_sets/fa_standard/residue_types/spin_labels/C2X.params 19413c19835 < 9e0d973447a2bad5ef6ff6951a0fc9af ./chemical/residue_type_sets/fa_standard/residue_types/spin_labels/C3X.params --- > fe1ed39fcc17ac7ddc7bb08aef6eb835 ./chemical/residue_type_sets/fa_standard/residue_types/spin_labels/C2X.params 19415c19837 < b67d4c75ad030a03dc7802f46d3da75c ./chemical/residue_type_sets/fa_standard/residue_types/spin_labels/C4X.params --- > 9e0d973447a2bad5ef6ff6951a0fc9af ./chemical/residue_type_sets/fa_standard/residue_types/spin_labels/C3X.params 19417c19839 < 6ffd37af4d0c40e3cc2b8eeca706af92 ./chemical/residue_type_sets/fa_standard/residue_types/spin_labels/CED.params --- > b67d4c75ad030a03dc7802f46d3da75c ./chemical/residue_type_sets/fa_standard/residue_types/spin_labels/C4X.params 19419c19841 < c683ab19862a3e53dc0f11e6e48f26ea ./chemical/residue_type_sets/fa_standard/residue_types/spin_labels/NTA.params --- > 6ffd37af4d0c40e3cc2b8eeca706af92 ./chemical/residue_type_sets/fa_standard/residue_types/spin_labels/CED.params 19420a19843 > c683ab19862a3e53dc0f11e6e48f26ea ./chemical/residue_type_sets/fa_standard/residue_types/spin_labels/NTA.params 19429a19853,19854 > 617e60b3f0d6483e517e6bffbc4ae989 ./chemical/residue_type_sets/fa_standard/residue_types.txt > 9226c98da695f0afb3760dcc56b1d563 ./chemical/residue_type_sets/fa_standard/residue_types.txt.slim 19437,19861d19861 < f8d98dc88494f2a9968f0f9a0df27415 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/exclude_pdb_component_list.txt < d0a3196e71bf0d1e1180f3205276c184 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/homogres.sh < 279ce5706cc65d717c195fd78f0af68c ./chemical/residue_type_sets/fa_standard_05.2009_icoor/homogres_revert.sh < af51a8baab6e7b35c882b376b6fa6fd4 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/merge_residue_behaviors.txt < 8f0c3af8c839cb78a82cbc3836f5b1c5 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/metapatches.txt < e681afa0dbacd721b8dc0c1b8d2176a7 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/metapatches/aromatic_bromination.txt < 42840391017b658afe61f3d56dcf3be6 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/metapatches/aromatic_chlorination.txt < 0cf42ca0b5932e12798c749b5073b15a ./chemical/residue_type_sets/fa_standard_05.2009_icoor/metapatches/aromatic_ethylation.txt < a7d288d034470e58a78307fcb86b4852 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/metapatches/aromatic_fluorination.txt < f6b712f723ed3f1a75160115b05da930 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/metapatches/aromatic_hydroxylation.txt < 9bf608eeccfbf683f799f97137384fca 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./chemical/residue_type_sets/fa_standard_talaris/patches/N_methylation.txt < c62f2b716fb131adf4cf73b37c3dc85f ./chemical/residue_type_sets/fa_standard_talaris/patches/NtermCtermDipeptoid.txt < 2f450896c3ff78702dcea49b7da662d3 ./chemical/residue_type_sets/fa_standard_talaris/patches/NtermPeptoidFull.txt < 98e5c045fd16fe04f684242a274b7f0c ./chemical/residue_type_sets/fa_standard_talaris/patches/NtermProteinFull.txt < 7a9a4412e75698ea34239e60b2b7daa9 ./chemical/residue_type_sets/fa_standard_talaris/patches/NtermProteinMethylated.txt < 36d63d849e5c1d2e63d60205976ed229 ./chemical/residue_type_sets/fa_standard_talaris/patches/NtermTruncation.txt < eaec8100756a93d46a9a4c94aa665c98 ./chemical/residue_type_sets/fa_standard_talaris/patches/PtermProteinFull.txt < 8bda1012452d993cc21955fbfee8b862 ./chemical/residue_type_sets/fa_standard_talaris/patches/ReplsBB.txt < be62dfcd5b902238e7c6e98eeef65016 ./chemical/residue_type_sets/fa_standard_talaris/patches/RepulsiveOnly_fa.txt < 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./chemical/residue_type_sets/fa_standard_talaris/patches/AcetylatedPeptoidNterm.txt > 06712e6fe028ab79b2dad71b78acbee0 ./chemical/residue_type_sets/fa_standard_talaris/patches/AcetylatedProteinNterm.txt > 37be50671955a28315a792deab9097b6 ./chemical/residue_type_sets/fa_standard_talaris/patches/branching/aryl-C-conjugated.txt > d39c0db1d2e5d73840d41997f1d8fd4d ./chemical/residue_type_sets/fa_standard_talaris/patches/branching/aryl-O-conjugated.txt 19911,19913d19885 < 1f3dbe99a9a0bf1dd81f9602c1a75957 ./chemical/residue_type_sets/fa_standard_talaris/patches/branching/S-linked_conjugation.txt < 37be50671955a28315a792deab9097b6 ./chemical/residue_type_sets/fa_standard_talaris/patches/branching/aryl-C-conjugated.txt < d39c0db1d2e5d73840d41997f1d8fd4d ./chemical/residue_type_sets/fa_standard_talaris/patches/branching/aryl-O-conjugated.txt 19916a19889 > 1f3dbe99a9a0bf1dd81f9602c1a75957 ./chemical/residue_type_sets/fa_standard_talaris/patches/branching/S-linked_conjugation.txt 19929a19903,19905 > d2e93dd0fc682d2c3248dcd55a6782c0 ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/cutpoint_lower.txt > 5715cbe31fe27c5be58b10ac94427a7e ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/cutpoint_upper.txt > 33869a37d40d2ead658ee35d25e6be20 ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/lower_terminus.txt 19931,19933d19906 < 9c9fa21f3567410927ef2251a4bb577b ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/N-R-3'-hydroxybutyryl-3-amination.txt < 67f6ddf62b9e03c6502265edf71120d9 ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/N-acetyl-2-amination.txt < a621c7b470442e87074f8f6b420cdda7 ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/N-linked_glycosylation.txt 19937,19939c19910,19912 < d2e93dd0fc682d2c3248dcd55a6782c0 ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/cutpoint_lower.txt < 5715cbe31fe27c5be58b10ac94427a7e ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/cutpoint_upper.txt < 33869a37d40d2ead658ee35d25e6be20 ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/lower_terminus.txt --- > 67f6ddf62b9e03c6502265edf71120d9 ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/N-acetyl-2-amination.txt > a621c7b470442e87074f8f6b420cdda7 ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/N-linked_glycosylation.txt > 9c9fa21f3567410927ef2251a4bb577b ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/N-R-3'-hydroxybutyryl-3-amination.txt 19941a19915,19919 > b679c0883425fdbdd114a22aa2e87d0d ./chemical/residue_type_sets/fa_standard_talaris/patches/C_methylamidated.txt > 43f63bd63e23a77c048c912b217996f4 ./chemical/residue_type_sets/fa_standard_talaris/patches/Cterm_amidation.txt > da934057d3d71ee954afac5045ed4566 ./chemical/residue_type_sets/fa_standard_talaris/patches/CtermPeptoidFull.txt > 458f08a41ee90b61e372b8c842faf54e ./chemical/residue_type_sets/fa_standard_talaris/patches/CtermProteinFull.txt > 4ee956873d4090440195c01d36452b33 ./chemical/residue_type_sets/fa_standard_talaris/patches/CtermTruncation.txt 19942a19921 > aa08341bf9528937a60fad1dfbdc89b2 ./chemical/residue_type_sets/fa_standard_talaris/patches/D_AA.txt 19951a19931,19941 > 38265eb53ec925f79c6bb90df2582c7e ./chemical/residue_type_sets/fa_standard_talaris/patches/MethylatedProteinCterm.txt > 8299ba30688568c8022db4e6e203188b ./chemical/residue_type_sets/fa_standard_talaris/patches/N_acetylated.txt > 38a5f890d5b3729edc0e311e16fe29a3 ./chemical/residue_type_sets/fa_standard_talaris/patches/N_formylated.txt > a40a2d4e870511981f48fd69c99809f0 ./chemical/residue_type_sets/fa_standard_talaris/patches/N_methylation.txt > c62f2b716fb131adf4cf73b37c3dc85f ./chemical/residue_type_sets/fa_standard_talaris/patches/NtermCtermDipeptoid.txt > 2f450896c3ff78702dcea49b7da662d3 ./chemical/residue_type_sets/fa_standard_talaris/patches/NtermPeptoidFull.txt > 98e5c045fd16fe04f684242a274b7f0c ./chemical/residue_type_sets/fa_standard_talaris/patches/NtermProteinFull.txt > 7a9a4412e75698ea34239e60b2b7daa9 ./chemical/residue_type_sets/fa_standard_talaris/patches/NtermProteinMethylated.txt > 36d63d849e5c1d2e63d60205976ed229 ./chemical/residue_type_sets/fa_standard_talaris/patches/NtermTruncation.txt > 50e94be80aba8a6a8278a62eaa368f87 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/dna/dna_cutpoint_lower.txt > bfa09fb1e587f229ae48fa278da76436 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/dna/dna_cutpoint_upper.txt 19955,19956d19944 < 50e94be80aba8a6a8278a62eaa368f87 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/dna/dna_cutpoint_lower.txt < bfa09fb1e587f229ae48fa278da76436 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/dna/dna_cutpoint_upper.txt 19971d19958 < 39ff7eecdaf3da00769593252cae3485 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/L_RNA.txt 19973a19961 > 39ff7eecdaf3da00769593252cae3485 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/L_RNA.txt 19976a19965,19966 > 459681f45b3776b837f25466e076c7fa ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/rna_cutpoint_lower.txt > 0a881c8f350e74d46b6844f6a7ec8ad7 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/rna_cutpoint_upper.txt 19979,19980d19968 < e16f71531475cc3c019d7772f56d1e91 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/VirtualBase.txt < b2e16b85718e681c64fe81f223447291 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/VirtualBaseHeavyAtom.txt 19981a19970,19971 > b2e16b85718e681c64fe81f223447291 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/VirtualBaseHeavyAtom.txt > e16f71531475cc3c019d7772f56d1e91 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/VirtualBase.txt 19984,19985d19973 < 6ca81713bd8dce9f2445346e387ab031 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/Virtual_RNA_Residue.txt < bd375384b53911262e0479660df0b8a0 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/Virtual_RNA_Residue_Exclude_Phosphate.txt 19987,19988c19975,19976 < 459681f45b3776b837f25466e076c7fa ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/rna_cutpoint_lower.txt < 0a881c8f350e74d46b6844f6a7ec8ad7 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/rna_cutpoint_upper.txt --- > bd375384b53911262e0479660df0b8a0 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/Virtual_RNA_Residue_Exclude_Phosphate.txt > 6ca81713bd8dce9f2445346e387ab031 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/Virtual_RNA_Residue.txt 19994a19983,19986 > eaec8100756a93d46a9a4c94aa665c98 ./chemical/residue_type_sets/fa_standard_talaris/patches/PtermProteinFull.txt > 8bda1012452d993cc21955fbfee8b862 ./chemical/residue_type_sets/fa_standard_talaris/patches/ReplsBB.txt > be62dfcd5b902238e7c6e98eeef65016 ./chemical/residue_type_sets/fa_standard_talaris/patches/RepulsiveOnly_fa.txt > e4357e6786d5c2eb944176549908e9c2 ./chemical/residue_type_sets/fa_standard_talaris/patches/SC_Fragment.txt 19995a19988,19989 > 4bb35d152b382832ef9af3431b4ea8b2 ./chemical/residue_type_sets/fa_standard_talaris/patches/ShoveBB.txt > 8c4acc378986d6613aabc242773c22ad ./chemical/residue_type_sets/fa_standard_talaris/patches/SpecialRotamer.txt 20000a19995,19996 > 2b3022d9212cac53c7b2f83932767bab ./chemical/residue_type_sets/fa_standard_talaris/patches.txt > bdb4105729e29322a8820f6695c4090a ./chemical/residue_type_sets/fa_standard_talaris/patches.txt.slim 20003a20000,20003 > 4608ec71a01a0bd1ec5de51a8a4d9d70 ./chemical/residue_type_sets/fa_standard_talaris/patches/VirtualBB.txt > e8428f9651f5ea2c2d552b3ac3d8effc ./chemical/residue_type_sets/fa_standard_talaris/patches/VirtualNterm.txt > 9c0f699d7254009afd3becf0bd0d161b ./chemical/residue_type_sets/fa_standard_talaris/patches/VirtualProteinResidue.txt > ad378c0b59e844ee8b722cae36d10aca ./chemical/residue_type_sets/fa_standard_talaris/patches/VirtualProteinSideChain.txt 20005,20006d20004 < 98bf200ed0d02fbfef24a72bdb315ebc ./chemical/residue_type_sets/fa_standard_talaris/residue_types.txt < 9226c98da695f0afb3760dcc56b1d563 ./chemical/residue_type_sets/fa_standard_talaris/residue_types.txt.slim 20048a20047 > ae1a10f80be32f44a8dd6dcb585727f9 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/carbohydrates/to4-alpha-Daup.params 20053d20051 < ae1a10f80be32f44a8dd6dcb585727f9 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/carbohydrates/to4-alpha-Daup.params 20074d20071 < d44e00d9b100b1cc5b75de11e01e535c ./chemical/residue_type_sets/fa_standard_talaris/residue_types/coenzymes/README.txt 20076a20074 > d44e00d9b100b1cc5b75de11e01e535c ./chemical/residue_type_sets/fa_standard_talaris/residue_types/coenzymes/README.txt 20123d20120 < 4e73ad505d17110dc62a5ff6468b3e74 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-caa/HIS.params 20124a20122 > 4e73ad505d17110dc62a5ff6468b3e74 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-caa/HIS.params 20135a20134,20137 > a53a292f7c3b35a92bf7bc804619a9ad ./chemical/residue_type_sets/fa_standard_talaris/residue_types/lipids/linoleate.params > 59f6dcf9fde344e750671a62337ec59b ./chemical/residue_type_sets/fa_standard_talaris/residue_types/lipids/ONonOMe.params > 54bcc5f2f47b2c549381c34483ba06f0 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/lipids/README.txt > b1a9716910a98037a23030054dc5e4f2 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/lipids/sphingosine.params 20139a20142 > e3dc5ff09ed9968d2fea072fa2256fbc ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/2.4-dimethyl-phenylalanine.params 20146d20148 < 30dd80d8f424a25d09d73e8504c4352a ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/2-amino-octanoic_acid.params 20147a20150 > 30dd80d8f424a25d09d73e8504c4352a ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/2-amino-octanoic_acid.params 20152,20153d20154 < e3dc5ff09ed9968d2fea072fa2256fbc ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/2.4-dimethyl-phenylalanine.params < d4b7c0960cca1330cbd221ed7ad47fa8 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/3-amino-tyrosine.params 20154a20156 > d4b7c0960cca1330cbd221ed7ad47fa8 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/3-amino-tyrosine.params 20160a20163,20166 > 562ff96aa719c1f2f2ea62352e46ea85 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/4.5-dehydro-leucine.params > e6cfa8975eeb6f1b42ce1f020fcb0899 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/4.5-dehydro-lysine.params > a78067096ef79338ac300d3eef7b39d4 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/4.5-dihydroxy-isoleucine.params > c45a3247e005c584db5622b927e23e4e ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/4-aminomethyl-phenylalanine.params 20164d20169 < c45a3247e005c584db5622b927e23e4e ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/4-aminomethyl-phenylalanine.params 20177,20179d20181 < 562ff96aa719c1f2f2ea62352e46ea85 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/4.5-dehydro-leucine.params < e6cfa8975eeb6f1b42ce1f020fcb0899 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/4.5-dehydro-lysine.params < a78067096ef79338ac300d3eef7b39d4 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/4.5-dihydroxy-isoleucine.params 20194,20214d20195 < 5ea9bfe4d3f5aa6e533d209b6a14709c ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/APA.params < 728d92bb067b125c829a00d223e3da7a ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/BCS.params < ec38398c32a72e96f811cf92be2e6121 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/BZP.params < 0f93d3a7652c11d699eb24564b5c0798 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/HIP.params < a57fd4929ecb323a467d3812f585ca00 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/HLU.params < f43e9d6cffb31368ad994ae9dc384c05 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/HP2.params < fc69d9816ca5d82aa295c44476b6a5da ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/HPR.params < 9cdc0c4b993ed5cf66445a714e67f23f ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/HTY.params < 1b7a88008dcb1241017bcb89eaa05852 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/MAL.params < 2a079a47aac025e48e951babad9b4cec ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/MPA.params < 1ae7f46be8904a3122db8141bca00fbc ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/MTP.params < 8e8f6b7104da8363f636ae074ca2d803 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/NLU.params < c51de7e57ab70c5b3a70439eae923215 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/NVL.params < 8e7e0f188cb6dba92a5571f9608f66eb ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/S56.params < 86a9e0e0b648ee44c427888bc9ef77cc ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/SAL.params < 67fb317002603129d63a01b57ffac2eb ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/TES.params < 6be13b455c21cf77e05a49c723ba7a70 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/V01.params < 2187a1fb137a61d3a665b73b0d20dbf2 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/V02.params < 14d55955b1d30ecaf8751e95b41cb9f0 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/V03.params < 1265c23cee287ffe49201c5c29cc1c24 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/V04.params < e6deb5950d09934ef79ace18225b0575 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/YPN.params 20217d20197 < 5a681851af3a0925670ca928e22c0c79 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/alpha-amino-glycine.params 20218a20199,20201 > 5a681851af3a0925670ca928e22c0c79 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/alpha-amino-glycine.params > 77c76882c2801660ff814970bbe0e0f7 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/alpha.beta-diaminopropionic_acid.params > 158e4e44f65581d3b0f93da5ea4b7597 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/alpha.gama-diaminobutyric_acid.params 20227,20228d20209 < 77c76882c2801660ff814970bbe0e0f7 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/alpha.beta-diaminopropionic_acid.params < 158e4e44f65581d3b0f93da5ea4b7597 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/alpha.gama-diaminobutyric_acid.params 20229a20211,20212 > 5ea9bfe4d3f5aa6e533d209b6a14709c ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/APA.params > 728d92bb067b125c829a00d223e3da7a ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/BCS.params 20232a20216 > 1f2c951a052c655dbcd2a97a319ef7b5 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/beta.beta-diphenyl-alanine.params 20239c20223 < 1f2c951a052c655dbcd2a97a319ef7b5 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/beta.beta-diphenyl-alanine.params --- > ec38398c32a72e96f811cf92be2e6121 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/BZP.params 20246a20231,20232 > 0f93d3a7652c11d699eb24564b5c0798 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/HIP.params > a57fd4929ecb323a467d3812f585ca00 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/HLU.params 20249a20236,20241 > f43e9d6cffb31368ad994ae9dc384c05 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/HP2.params > fc69d9816ca5d82aa295c44476b6a5da ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/HPR.params > 9cdc0c4b993ed5cf66445a714e67f23f ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/HTY.params > 1b7a88008dcb1241017bcb89eaa05852 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/MAL.params > 2a079a47aac025e48e951babad9b4cec ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/MPA.params > 1ae7f46be8904a3122db8141bca00fbc ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/MTP.params 20250a20243,20244 > 8e8f6b7104da8363f636ae074ca2d803 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/NLU.params > c51de7e57ab70c5b3a70439eae923215 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/NVL.params 20253d20246 < b0dc4be8d6da4f2c6b8e80a7da0433cc ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/phenyl-serine.params 20254a20248,20250 > b0dc4be8d6da4f2c6b8e80a7da0433cc ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/phenyl-serine.params > 8e7e0f188cb6dba92a5571f9608f66eb ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/S56.params > 86a9e0e0b648ee44c427888bc9ef77cc ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/SAL.params 20257a20254 > 67fb317002603129d63a01b57ffac2eb ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/TES.params 20259d20255 < e22ffbe78704a1de725eadccbdfc37e4 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/trifluoro-leucine.params 20261,20264c20257,20262 < 59f6dcf9fde344e750671a62337ec59b ./chemical/residue_type_sets/fa_standard_talaris/residue_types/lipids/ONonOMe.params < 54bcc5f2f47b2c549381c34483ba06f0 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/lipids/README.txt < a53a292f7c3b35a92bf7bc804619a9ad ./chemical/residue_type_sets/fa_standard_talaris/residue_types/lipids/linoleate.params < b1a9716910a98037a23030054dc5e4f2 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/lipids/sphingosine.params --- > e22ffbe78704a1de725eadccbdfc37e4 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/trifluoro-leucine.params > 6be13b455c21cf77e05a49c723ba7a70 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/V01.params > 2187a1fb137a61d3a665b73b0d20dbf2 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/V02.params > 14d55955b1d30ecaf8751e95b41cb9f0 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/V03.params > 1265c23cee287ffe49201c5c29cc1c24 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/V04.params > e6deb5950d09934ef79ace18225b0575 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/YPN.params 20273d20270 < 2c9a3082c06f1d3db33644cc5a46b9e5 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/metal_ions/FE.params 20274a20272 > 2c9a3082c06f1d3db33644cc5a46b9e5 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/metal_ions/FE.params 20284d20281 < 3b9383bb4e7d1c2f505975dd14397bbc ./chemical/residue_type_sets/fa_standard_talaris/residue_types/mineral_surface/HYD.params 20285a20283 > 3b9383bb4e7d1c2f505975dd14397bbc ./chemical/residue_type_sets/fa_standard_talaris/residue_types/mineral_surface/HYD.params 20287a20286 > d79829acd471b2e4d3c315377c36778c ./chemical/residue_type_sets/fa_standard_talaris/residue_types/mineral_surface/Oice.params 20290d20288 < d79829acd471b2e4d3c315377c36778c ./chemical/residue_type_sets/fa_standard_talaris/residue_types/mineral_surface/Oice.params 20387,20394d20384 < d8153f3f5a91b95ed336eb871fceb45f ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RAD_n.params < 201d365bfff212b69e7354b692378c47 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RAD_s.params < 39d7a286521b987fccc4ea44ec825ea3 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RCY_n.params < 3e27b084309d8b75cab99329409d1b00 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RCY_s.params < 1ebf80dd8135c12bb0787fcbc5552a7b ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RGU_n.params < 1617c4325d11a081a6a37e2937dda12c ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RGU_s.params < 6b861c2b733222879ce99d38817b98bd ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/URA_n.params < 4d7dfd7d6ba919a5dd93dd9805212b49 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/URA_s.params 20402a20393,20400 > d8153f3f5a91b95ed336eb871fceb45f ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RAD_n.params > 201d365bfff212b69e7354b692378c47 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RAD_s.params > 39d7a286521b987fccc4ea44ec825ea3 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RCY_n.params > 3e27b084309d8b75cab99329409d1b00 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RCY_s.params > 1ebf80dd8135c12bb0787fcbc5552a7b ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RGU_n.params > 1617c4325d11a081a6a37e2937dda12c ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RGU_s.params > 6b861c2b733222879ce99d38817b98bd ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/URA_n.params > 4d7dfd7d6ba919a5dd93dd9805212b49 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/URA_s.params 20530d20527 < da4bed1aeba3a6b825cce4148d9b4260 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/rosetta_specific/VRT.params 20532a20530 > da4bed1aeba3a6b825cce4148d9b4260 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/rosetta_specific/VRT.params 20555a20554,20555 > 98bf200ed0d02fbfef24a72bdb315ebc ./chemical/residue_type_sets/fa_standard_talaris/residue_types.txt > 9226c98da695f0afb3760dcc56b1d563 ./chemical/residue_type_sets/fa_standard_talaris/residue_types.txt.slim 20564d20563 < 393bef40eb57137e1750b4480417eb15 ./chemical/ring_conformer_sets/README.txt 20570a20570 > 393bef40eb57137e1750b4480417eb15 ./chemical/ring_conformer_sets/README.txt 20574,20576d20573 < 2994c41d9e2bdcc86e2b1d9e3f4ed155 ./external/SPARTA+/tab/C.level1.WI.tab < 14d2d64a86e9d4269dffa9e9254cdea0 ./external/SPARTA+/tab/C.level1.WL1.tab < f54b00b89fa528c7dbfcb1264bc83935 ./external/SPARTA+/tab/C.level1.WL2.tab 20583,20591c20580,20582 < 951050619a491259e1778bba2517a62c ./external/SPARTA+/tab/HA.level1.WI.tab < 038928cd40f111d20c2ddf126a170b42 ./external/SPARTA+/tab/HA.level1.WL1.tab < 2860ba9b9d2ed2b37e9f76e77e1f4053 ./external/SPARTA+/tab/HA.level1.WL2.tab < 06539974d4e9d50e5ddcc06961f083f5 ./external/SPARTA+/tab/HN.level1.WI.tab < d12b9e8788e58e458e619f21e15efc83 ./external/SPARTA+/tab/HN.level1.WL1.tab < 0850bdbfd6ab5f7d4e307789a91a5b78 ./external/SPARTA+/tab/HN.level1.WL2.tab < c599ed22b1d99505f3383357a203d7fd ./external/SPARTA+/tab/N.level1.WI.tab < 695d72574c57c4f59fbfd080118dc70f ./external/SPARTA+/tab/N.level1.WL1.tab < e49c25070c36e478fcf9c9d57f19abbd ./external/SPARTA+/tab/N.level1.WL2.tab --- > 2994c41d9e2bdcc86e2b1d9e3f4ed155 ./external/SPARTA+/tab/C.level1.WI.tab > 14d2d64a86e9d4269dffa9e9254cdea0 ./external/SPARTA+/tab/C.level1.WL1.tab > f54b00b89fa528c7dbfcb1264bc83935 ./external/SPARTA+/tab/C.level1.WL2.tab 20593,20611d20583 < e5955fc4c4107fff3cdf8fed2edd7aba ./external/SPARTA+/tab/errorSurface/C/C..A450.S5.RMS.tab < 4ec03e351ce9b13ed60d6950cbd61dfb ./external/SPARTA+/tab/errorSurface/C/D..A450.S5.RMS.tab < ae5253b4f4ea567a792d8b0449e732b2 ./external/SPARTA+/tab/errorSurface/C/E..A450.S5.RMS.tab < 6af4be52a6a6cfdac3b161feff760849 ./external/SPARTA+/tab/errorSurface/C/F..A450.S5.RMS.tab < 0e32588c1c3f6eeea140af0eaa27cb0d ./external/SPARTA+/tab/errorSurface/C/G..A450.S5.RMS.tab < 789278bed0e32f4c128fe34810e7fab1 ./external/SPARTA+/tab/errorSurface/C/H..A450.S5.RMS.tab < f12e4c2fcc5d3e6b291e78431351c2dd ./external/SPARTA+/tab/errorSurface/C/I..A450.S5.RMS.tab < 52a8dafe0f09ccc021d75f7873663597 ./external/SPARTA+/tab/errorSurface/C/K..A450.S5.RMS.tab < e595d33b159b342b0ecbd6a138406390 ./external/SPARTA+/tab/errorSurface/C/L..A450.S5.RMS.tab < 79a526d63a9aee936d65c18c5fef0908 ./external/SPARTA+/tab/errorSurface/C/M..A450.S5.RMS.tab < 6f31399266dba145e679c11270e13ec3 ./external/SPARTA+/tab/errorSurface/C/N..A450.S5.RMS.tab < ff2cdd0c377e24f3ace7f4a7b0f49378 ./external/SPARTA+/tab/errorSurface/C/P..A450.S5.RMS.tab < f5d93a3dd631caa70becf2d9dbdfe39d ./external/SPARTA+/tab/errorSurface/C/Q..A450.S5.RMS.tab < 7f221838d4cd64d29254315351598c88 ./external/SPARTA+/tab/errorSurface/C/R..A450.S5.RMS.tab < 7a74dad71bdf1c23a0aea7cb32bac72d ./external/SPARTA+/tab/errorSurface/C/S..A450.S5.RMS.tab < 52902ead85f94c2d70de76e283cd2d46 ./external/SPARTA+/tab/errorSurface/C/T..A450.S5.RMS.tab < a277c34c771adba2aca1ef48a9fe65e3 ./external/SPARTA+/tab/errorSurface/C/V..A450.S5.RMS.tab < 08f42192816f0ade76f4fb1d1f7d274d ./external/SPARTA+/tab/errorSurface/C/W..A450.S5.RMS.tab < 785f92a6113cd345b5a9b8e394e071e2 ./external/SPARTA+/tab/errorSurface/C/Y..A450.S5.RMS.tab 20650a20623,20641 > e5955fc4c4107fff3cdf8fed2edd7aba ./external/SPARTA+/tab/errorSurface/C/C..A450.S5.RMS.tab > 4ec03e351ce9b13ed60d6950cbd61dfb ./external/SPARTA+/tab/errorSurface/C/D..A450.S5.RMS.tab > ae5253b4f4ea567a792d8b0449e732b2 ./external/SPARTA+/tab/errorSurface/C/E..A450.S5.RMS.tab > 6af4be52a6a6cfdac3b161feff760849 ./external/SPARTA+/tab/errorSurface/C/F..A450.S5.RMS.tab > 0e32588c1c3f6eeea140af0eaa27cb0d ./external/SPARTA+/tab/errorSurface/C/G..A450.S5.RMS.tab > 789278bed0e32f4c128fe34810e7fab1 ./external/SPARTA+/tab/errorSurface/C/H..A450.S5.RMS.tab > f12e4c2fcc5d3e6b291e78431351c2dd ./external/SPARTA+/tab/errorSurface/C/I..A450.S5.RMS.tab > 52a8dafe0f09ccc021d75f7873663597 ./external/SPARTA+/tab/errorSurface/C/K..A450.S5.RMS.tab > e595d33b159b342b0ecbd6a138406390 ./external/SPARTA+/tab/errorSurface/C/L..A450.S5.RMS.tab > 79a526d63a9aee936d65c18c5fef0908 ./external/SPARTA+/tab/errorSurface/C/M..A450.S5.RMS.tab > 6f31399266dba145e679c11270e13ec3 ./external/SPARTA+/tab/errorSurface/C/N..A450.S5.RMS.tab > ff2cdd0c377e24f3ace7f4a7b0f49378 ./external/SPARTA+/tab/errorSurface/C/P..A450.S5.RMS.tab > f5d93a3dd631caa70becf2d9dbdfe39d ./external/SPARTA+/tab/errorSurface/C/Q..A450.S5.RMS.tab > 7f221838d4cd64d29254315351598c88 ./external/SPARTA+/tab/errorSurface/C/R..A450.S5.RMS.tab > 7a74dad71bdf1c23a0aea7cb32bac72d ./external/SPARTA+/tab/errorSurface/C/S..A450.S5.RMS.tab > 52902ead85f94c2d70de76e283cd2d46 ./external/SPARTA+/tab/errorSurface/C/T..A450.S5.RMS.tab > a277c34c771adba2aca1ef48a9fe65e3 ./external/SPARTA+/tab/errorSurface/C/V..A450.S5.RMS.tab > 08f42192816f0ade76f4fb1d1f7d274d ./external/SPARTA+/tab/errorSurface/C/W..A450.S5.RMS.tab > 785f92a6113cd345b5a9b8e394e071e2 ./external/SPARTA+/tab/errorSurface/C/Y..A450.S5.RMS.tab 20710a20702,20707 > 951050619a491259e1778bba2517a62c ./external/SPARTA+/tab/HA.level1.WI.tab > 038928cd40f111d20c2ddf126a170b42 ./external/SPARTA+/tab/HA.level1.WL1.tab > 2860ba9b9d2ed2b37e9f76e77e1f4053 ./external/SPARTA+/tab/HA.level1.WL2.tab > 06539974d4e9d50e5ddcc06961f083f5 ./external/SPARTA+/tab/HN.level1.WI.tab > d12b9e8788e58e458e619f21e15efc83 ./external/SPARTA+/tab/HN.level1.WL1.tab > 0850bdbfd6ab5f7d4e307789a91a5b78 ./external/SPARTA+/tab/HN.level1.WL2.tab 20711a20709,20711 > c599ed22b1d99505f3383357a203d7fd ./external/SPARTA+/tab/N.level1.WI.tab > 695d72574c57c4f59fbfd080118dc70f ./external/SPARTA+/tab/N.level1.WL1.tab > e49c25070c36e478fcf9c9d57f19abbd ./external/SPARTA+/tab/N.level1.WL2.tab 20723a20724 > 6944b8b16a20390a75437f52bdf9dea3 ./gpu/darc.cl 20727d20727 < 6944b8b16a20390a75437f52bdf9dea3 ./gpu/darc.cl 20729d20728 < 00774ec6d7aa270c4547f1457574f915 ./input_output/3-letter_codes/README.txt 20734a20734 > 00774ec6d7aa270c4547f1457574f915 ./input_output/3-letter_codes/README.txt 20736d20735 < 4c6b842c79a4081eb903caea32ed3692 ./input_output/README.txt 20738a20738 > 4c6b842c79a4081eb903caea32ed3692 ./input_output/README.txt 20742,20743d20741 < b6d1e44852fd99059d8009f9eec86bb1 ./protocol_data/SDE/GUIP.matrix < 5c11ada8f399e9b7f89fc8bd73778f84 ./protocol_data/SDE/spc216.pdb 20748a20747 > 25716e01de5a1bb46db37f197090651a ./protocol_data/crick_parameters/a3b.crick_params 20750c20749,20753 < ca24ec835808023b059a62e18cd86407 ./protocol_data/crick_parameters/L_PPI.crick_params --- > dafdf8bc4e4d42182d3205dd609c6f20 ./protocol_data/crick_parameters/alpha_helix_100.crick_params > 61c0d2e8a7f2e4ae8ef5569dc8e5ba33 ./protocol_data/crick_parameters/alpha_helix.crick_params > b7cc5482fd9bf28fb866b62e554528af ./protocol_data/crick_parameters/beta_strand.crick_params > 7efae9ddec4ee0b6673e84ec6d9098e9 ./protocol_data/crick_parameters/collagen.crick_params > b11291441c4cc7f6923b3a1cb8989d2e ./protocol_data/crick_parameters/daa_beta_strand.crick_params 20751a20755,20756 > ca24ec835808023b059a62e18cd86407 ./protocol_data/crick_parameters/L_PPI.crick_params > 20337e0d83f4c5afbf30d70220420469 ./protocol_data/crick_parameters/neutral_beta_strand.crick_params 20755a20761 > 28536e9c292f4420112d67f1dca41b72 ./protocol_data/crick_parameters/three_10.crick_params 20758,20765d20763 < 25716e01de5a1bb46db37f197090651a ./protocol_data/crick_parameters/a3b.crick_params < 61c0d2e8a7f2e4ae8ef5569dc8e5ba33 ./protocol_data/crick_parameters/alpha_helix.crick_params < dafdf8bc4e4d42182d3205dd609c6f20 ./protocol_data/crick_parameters/alpha_helix_100.crick_params < b7cc5482fd9bf28fb866b62e554528af ./protocol_data/crick_parameters/beta_strand.crick_params < 7efae9ddec4ee0b6673e84ec6d9098e9 ./protocol_data/crick_parameters/collagen.crick_params < b11291441c4cc7f6923b3a1cb8989d2e ./protocol_data/crick_parameters/daa_beta_strand.crick_params < 20337e0d83f4c5afbf30d70220420469 ./protocol_data/crick_parameters/neutral_beta_strand.crick_params < 28536e9c292f4420112d67f1dca41b72 ./protocol_data/crick_parameters/three_10.crick_params 20772a20771,20772 > b6d1e44852fd99059d8009f9eec86bb1 ./protocol_data/SDE/GUIP.matrix > 5c11ada8f399e9b7f89fc8bd73778f84 ./protocol_data/SDE/spc216.pdb 20797,20799d20796 < 1e24c5a200f60f71bc8b3be246e9626d ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/.git < ae79e563b8a09c8fc37978f18dbaa640 ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/ESM/LICENSE < 0d759eb1132c8639588f1ce613abeb04 ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/ESM/README.md 20804c20801,20804 < 22450bad1440f2ed2bab00abb4f60ba2 ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/README.md --- > ae79e563b8a09c8fc37978f18dbaa640 ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/ESM/LICENSE > 0d759eb1132c8639588f1ce613abeb04 ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/ESM/README.md > 1e24c5a200f60f71bc8b3be246e9626d ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/.git > 08916859a0ec5d4eb6ef25e3ec6a1c81 ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/predict_PTMs/deamidation_rates.csv 20881c20881 < 08916859a0ec5d4eb6ef25e3ec6a1c81 ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/predict_PTMs/deamidation_rates.csv --- > 22450bad1440f2ed2bab00abb4f60ba2 ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/README.md 20883d20882 < c1a2960e6c3c14e74a9ef2c8d1313cdc ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/trRosetta/README.md 20885,20923c20884 < f2d956ca993a1f232dfd1a558bf1b09e ./rotamer/.gitignore < d28acfa25d7d302fb495eafc7aedb300 ./rotamer/ExtendedOpt1-5/.gitignore < c539ab44dd377506eab6f07c9e268f10 ./rotamer/ExtendedOpt1-5/AcademicLicenseBBDep2010.txt < d41d8cd98f00b204e9800998ecf8427e ./rotamer/ExtendedOpt1-5/Default-5StepDown.txt < 62c42f18acc2b7a13db0cfd123dfaa86 ./rotamer/ExtendedOpt1-5/Description.txt < 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7aa7315035393e00274b4294884b5015 ./rotamer/ExtendedOpt1-5/glu.bbdep.densities.lib.gz < 9c895cbdf414b94fe55748f9d5b52f54 ./rotamer/ExtendedOpt1-5/glu.bbdep.rotamers.lib.gz < dd491e2e44f73ede6e3f78ead597428c ./rotamer/ExtendedOpt1-5/glu.bbind.chi3.Definitions.lib.gz < 226df9b344ca2ad7c6a8719df441a2c1 ./rotamer/ExtendedOpt1-5/his.bbdep.densities.lib.gz < 7155efdce994172532e66efa7786de10 ./rotamer/ExtendedOpt1-5/his.bbdep.rotamers.lib.gz < 3509961ef23865ecde735136370030ea ./rotamer/ExtendedOpt1-5/his.bbind.chi2.Definitions.lib.gz < 503fa06c2604b766227c60f69cdde452 ./rotamer/ExtendedOpt1-5/ile.bbdep.rotamers.lib.gz < b2a5393a9a5f333f636f1cbdd42d81de ./rotamer/ExtendedOpt1-5/leu.bbdep.rotamers.lib.gz < 4644ceb68b612214ac7c7f93e24d13e8 ./rotamer/ExtendedOpt1-5/lys.bbdep.rotamers.lib.gz < 0de838b5b925a773cea852d24d3631c0 ./rotamer/ExtendedOpt1-5/met.bbdep.rotamers.lib.gz < fcaddd83effe4197d4ae3aa18d253226 ./rotamer/ExtendedOpt1-5/phe.bbdep.densities.lib.gz < 247232dee4bb8491f55637280b4b7887 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./rotamer/shapovalov/StpDwn_2-2-2/tyr.bbind.chi2.Definitions.lib.gz > 74bd30c405212ce6bfe718b692da14cb ./rotamer/shapovalov/StpDwn_2-2-2/val.bbdep.rotamers.lib.gz 21170,21171d21170 < e56833d5b70c5111ce29db7432118f7a ./rotamer/shapovalov/StpDwn_25-25-25/Description.txt < 6fe94ccaa085b2067001ea9e5a717190 ./rotamer/shapovalov/StpDwn_25-25-25/Taken.From.txt 21179a21179 > e56833d5b70c5111ce29db7432118f7a ./rotamer/shapovalov/StpDwn_25-25-25/Description.txt 21197a21198 > 6fe94ccaa085b2067001ea9e5a717190 ./rotamer/shapovalov/StpDwn_25-25-25/Taken.From.txt 21207,21209d21207 < e56833d5b70c5111ce29db7432118f7a ./rotamer/shapovalov/StpDwn_5-5-5/Description.txt < d523d2cc401ec0aea72f820c17cef454 ./rotamer/shapovalov/StpDwn_5-5-5/Suggested.Default.txt < 7b9a71ce2f9e4d7f14e80d34ab33495c ./rotamer/shapovalov/StpDwn_5-5-5/Taken.From.txt 21217a21216 > e56833d5b70c5111ce29db7432118f7a ./rotamer/shapovalov/StpDwn_5-5-5/Description.txt 21235a21235,21236 > d523d2cc401ec0aea72f820c17cef454 ./rotamer/shapovalov/StpDwn_5-5-5/Suggested.Default.txt > 7b9a71ce2f9e4d7f14e80d34ab33495c ./rotamer/shapovalov/StpDwn_5-5-5/Taken.From.txt 21246,21249d21246 < 9fca8b2c5743394d96f5e5113a56fa17 ./rotamer/shapovalov/argumentsExample.shapovalov.txt < bfeae5081d6202ad71c8394178d20ad1 ./sampling/SASA-angles.dat < 827067e9a3806ca6f41ffc5b6a77876c ./sampling/SASA-masks.dat < 6466af1ac4800f7e8b4eab71cedd228f ./sampling/antibodies/Fragments/H3_CTERM 21332d21328 < b3ceb356b4fee031bd6e6478e9d2b478 ./sampling/antibodies/cluster_based_constraints/CircularHarmonic/outliers_false_liberal/H1-13-1.txt 21334a21331 > b3ceb356b4fee031bd6e6478e9d2b478 ./sampling/antibodies/cluster_based_constraints/CircularHarmonic/outliers_false_liberal/H1-13-1.txt 21440d21436 < f5246e1bad2e622c0ff80eb9cfb364e4 ./sampling/antibodies/cluster_based_constraints/CircularHarmonic/outliers_false_liberal_use_means/H1-13-1.txt 21442a21439 > f5246e1bad2e622c0ff80eb9cfb364e4 ./sampling/antibodies/cluster_based_constraints/CircularHarmonic/outliers_false_liberal_use_means/H1-13-1.txt 21549d21545 < 06ce3f8ca33d7cd9f92c028c2df9a13f ./sampling/antibodies/cluster_based_constraints/CircularHarmonic/outliers_true/H1-13-1.txt 21551a21548 > 06ce3f8ca33d7cd9f92c028c2df9a13f ./sampling/antibodies/cluster_based_constraints/CircularHarmonic/outliers_true/H1-13-1.txt 21663d21659 < 393aa8fa255e9fc743c3771492916014 ./sampling/antibodies/cluster_based_constraints/CircularHarmonic/outliers_true_use_means/H1-13-1.txt 21665a21662 > 393aa8fa255e9fc743c3771492916014 ./sampling/antibodies/cluster_based_constraints/CircularHarmonic/outliers_true_use_means/H1-13-1.txt 21775d21771 < 4ae9c71b0f1c61b8afb2a8f22a242c2d ./sampling/antibodies/cluster_center_dihedrals.txt 21776a21773 > 4ae9c71b0f1c61b8afb2a8f22a242c2d ./sampling/antibodies/cluster_center_dihedrals.txt 21779a21777 > 6466af1ac4800f7e8b4eab71cedd228f ./sampling/antibodies/Fragments/H3_CTERM 21782d21779 < fe406905a5ab8bd0de410dc93e8b99d5 ./sampling/antibodies/numbering_schemes/numbering_scheme_definitions.txt 21783a21781 > fe406905a5ab8bd0de410dc93e8b99d5 ./sampling/antibodies/numbering_schemes/numbering_scheme_definitions.txt 21794a21793 > 3277fa8060c9969f0c5f3ed721c45b34 ./sampling/fragpicker_rama_tables/E_dc.counts.gz 21795a21795 > f5e4508caf4f660bd1975dcaeb485752 ./sampling/fragpicker_rama_tables/E_dcP.counts.gz 21831,21832d21830 < 3277fa8060c9969f0c5f3ed721c45b34 ./sampling/fragpicker_rama_tables/E_dc.counts.gz < f5e4508caf4f660bd1975dcaeb485752 ./sampling/fragpicker_rama_tables/E_dcP.counts.gz 21836a21835 > 91b00e1bd0c4dd8d8eb43c19f5fc51d7 ./sampling/fragpicker_rama_tables/H_dc.counts.gz 21837a21837 > 21f935152d7b0c9c78fa7b7b7f6566c6 ./sampling/fragpicker_rama_tables/H_dcP.counts.gz 21873,21874d21872 < 91b00e1bd0c4dd8d8eb43c19f5fc51d7 ./sampling/fragpicker_rama_tables/H_dc.counts.gz < 21f935152d7b0c9c78fa7b7b7f6566c6 ./sampling/fragpicker_rama_tables/H_dcP.counts.gz 21878a21877 > 9b6d46b6325c98d0932069c76e8b037c ./sampling/fragpicker_rama_tables/L_dc.counts.gz 21879a21879 > b00b477c023b5077e7968e4a9cd34928 ./sampling/fragpicker_rama_tables/L_dcP.counts.gz 21915,21916d21914 < 9b6d46b6325c98d0932069c76e8b037c ./sampling/fragpicker_rama_tables/L_dc.counts.gz < b00b477c023b5077e7968e4a9cd34928 ./sampling/fragpicker_rama_tables/L_dcP.counts.gz 21918d21915 < 4bd5d9b7660b6fc927c593a1da8c741a ./sampling/orientations/orientgridall/ExpandSet.cpp 21922d21918 < 7ea61dfa5f11079e3ad85a320950bcb5 ./sampling/orientations/orientgridall/data/c48u1.grid.gz 21944d21939 < 8329048829edab41a3a9e186edf5b660 ./sampling/orientations/orientgridall/data/c48u181.grid.gz 21945a21941 > 8329048829edab41a3a9e186edf5b660 ./sampling/orientations/orientgridall/data/c48u181.grid.gz 21947a21944 > 7ea61dfa5f11079e3ad85a320950bcb5 ./sampling/orientations/orientgridall/data/c48u1.grid.gz 21956d21952 < b7ae491e99fcd0bd37c4bddfd88d66d4 ./sampling/orientations/orientgridall/data/c48u27.grid.gz 21957a21954 > b7ae491e99fcd0bd37c4bddfd88d66d4 ./sampling/orientations/orientgridall/data/c48u27.grid.gz 22004d22000 < 74854dd5a9fda3df8472d825c10836a5 ./sampling/orientations/orientgridall/data/c48u83.grid.gz 22005a22002 > 74854dd5a9fda3df8472d825c10836a5 ./sampling/orientations/orientgridall/data/c48u83.grid.gz 22010d22006 < 9b0413e8b44448f15c5c531c0fa8d430 ./sampling/orientations/orientgridall/data/c48u9.grid.gz 22014c22010 < 2d8048ca9a2550fadbdc41a32dd36a16 ./sampling/orientations/orientgridall/data/c600v.quat.gz --- > 9b0413e8b44448f15c5c531c0fa8d430 ./sampling/orientations/orientgridall/data/c48u9.grid.gz 22016a22013,22015 > 2d8048ca9a2550fadbdc41a32dd36a16 ./sampling/orientations/orientgridall/data/c600v.quat.gz > 4bd5d9b7660b6fc927c593a1da8c741a ./sampling/orientations/orientgridall/ExpandSet.cpp > cb2465e3cd43a183ba43419e62a368b7 ./sampling/relax_scripts/index.dat 22020a22020,22023 > 3326d79c7c8424a808b9a35948c45273 ./sampling/relax_scripts/legacy.beta_nov16.dualspace.txt > 8dd32c12dc1c4a35543046844cefd9b8 ./sampling/relax_scripts/legacy.beta_nov16.txt > e8dc1fbf376b833493adec18d0adb8bf ./sampling/relax_scripts/legacy.dualspace.txt > a7f2dbaee42f61ad35cf1e03c099e770 ./sampling/relax_scripts/legacy.txt 22024a22028,22031 > d268dfb2f025f376d27ff4ee6ee02eaa ./sampling/relax_scripts/no_cst_ramping.beta_nov16.dualspace.txt > 3981ed4a1acd038f9c98e75c286eab47 ./sampling/relax_scripts/no_cst_ramping.beta_nov16.txt > 22a355fbd16651c70342a5a729cda066 ./sampling/relax_scripts/no_cst_ramping.dualspace.txt > 908c78d6b7c228efa23af2c6f0ae9738 ./sampling/relax_scripts/no_cst_ramping.txt 22036,22044d22042 < cb2465e3cd43a183ba43419e62a368b7 ./sampling/relax_scripts/index.dat < 3326d79c7c8424a808b9a35948c45273 ./sampling/relax_scripts/legacy.beta_nov16.dualspace.txt < 8dd32c12dc1c4a35543046844cefd9b8 ./sampling/relax_scripts/legacy.beta_nov16.txt < e8dc1fbf376b833493adec18d0adb8bf ./sampling/relax_scripts/legacy.dualspace.txt < a7f2dbaee42f61ad35cf1e03c099e770 ./sampling/relax_scripts/legacy.txt < d268dfb2f025f376d27ff4ee6ee02eaa ./sampling/relax_scripts/no_cst_ramping.beta_nov16.dualspace.txt < 3981ed4a1acd038f9c98e75c286eab47 ./sampling/relax_scripts/no_cst_ramping.beta_nov16.txt < 22a355fbd16651c70342a5a729cda066 ./sampling/relax_scripts/no_cst_ramping.dualspace.txt < 908c78d6b7c228efa23af2c6f0ae9738 ./sampling/relax_scripts/no_cst_ramping.txt 22047,22048d22044 < 058cd87f375faf1ca094eb26154aba79 ./sampling/rna/1jj2.torsions < 1d84a0ad6266152d7661feab4acda118 ./sampling/rna/1jj2_RNA_jump_library.dat 22050,22058c22046,22047 < 7837cdb321b0ec0bc7510657a6bad5c3 ./sampling/rna/RICHARDSON_RNA09.torsions < 17eb1372f9edd93b3f0e8799d2977f60 ./sampling/rna/RNA11_filter_all.jump < 17d71c61da80a35557715856a472eeed ./sampling/rna/RNA11_filter_all.torsions < d0e1ee07faa7793a3c829f7d09e9a07d ./sampling/rna/RNA11_filter_pucker.jump < bbedc8c5984a8f992604ab5c147620a1 ./sampling/rna/RNA11_filter_pucker.torsions < 69e2ba3a5bb145f14f88445349865c60 ./sampling/rna/RNA11_full.jump < 447844f62671e88c7c3d1b22a5e44628 ./sampling/rna/RNA11_full.torsions < 33c2bd8651aa66a8cef5845e24beaaef ./sampling/rna/RNA18_HUB_2.154_2.5.jump < 02fd221964c77dd3dcfdb2c1b716c5eb ./sampling/rna/RNA18_HUB_2.154_2.5.torsions --- > 1d84a0ad6266152d7661feab4acda118 ./sampling/rna/1jj2_RNA_jump_library.dat > 058cd87f375faf1ca094eb26154aba79 ./sampling/rna/1jj2.torsions 22096d22084 < 99b7f7c2e8bd3af6cd580c77a449f703 ./sampling/rna/base_pair_steps/general/README 22386a22375 > 99b7f7c2e8bd3af6cd580c77a449f703 ./sampling/rna/base_pair_steps/general/README 22625c22614,22622 < c200df8d78e14d1f3dd79d76086e62b7 ./sampling/rna/submotif/base_pairs/G_GAI.pdb --- > 7837cdb321b0ec0bc7510657a6bad5c3 ./sampling/rna/RICHARDSON_RNA09.torsions > 17eb1372f9edd93b3f0e8799d2977f60 ./sampling/rna/RNA11_filter_all.jump > 17d71c61da80a35557715856a472eeed ./sampling/rna/RNA11_filter_all.torsions > d0e1ee07faa7793a3c829f7d09e9a07d ./sampling/rna/RNA11_filter_pucker.jump > bbedc8c5984a8f992604ab5c147620a1 ./sampling/rna/RNA11_filter_pucker.torsions > 69e2ba3a5bb145f14f88445349865c60 ./sampling/rna/RNA11_full.jump > 447844f62671e88c7c3d1b22a5e44628 ./sampling/rna/RNA11_full.torsions > 33c2bd8651aa66a8cef5845e24beaaef ./sampling/rna/RNA18_HUB_2.154_2.5.jump > 02fd221964c77dd3dcfdb2c1b716c5eb ./sampling/rna/RNA18_HUB_2.154_2.5.torsions 22628a22626 > c200df8d78e14d1f3dd79d76086e62b7 ./sampling/rna/submotif/base_pairs/G_GAI.pdb 22644a22643,22644 > bfeae5081d6202ad71c8394178d20ad1 ./sampling/SASA-angles.dat > 827067e9a3806ca6f41ffc5b6a77876c ./sampling/SASA-masks.dat 22649d22648 < 3f16ef1a3a335828720affe7f4a95b8c ./sampling/spheres/sphere_12.dat.gz 22650a22650 > 3f16ef1a3a335828720affe7f4a95b8c ./sampling/spheres/sphere_12.dat.gz 22711,22730d22710 < 0eab50f20995eec6e4d636fb0bf4976e ./scoring/ProQ/ProQ2_model.1.linear < 1b1c69169d45b3ad28e9733f62fff579 ./scoring/ProQ/ProQ2_model.1.linear_retrained_for_rosetta < c78b532f0bb399b1054d91ff79a689f2 ./scoring/ProQ/ProQ2_model.2.linear < 8a26e4be50d2a6fa88c987889de213f7 ./scoring/ProQ/ProQ2_model.2.linear_retrained_for_rosetta < a07596265fd4dcbd8da86e43bfb41dc6 ./scoring/ProQ/ProQ2_model.3.linear < 5746e07cf65a2e68569d3cc1cef771e6 ./scoring/ProQ/ProQ2_model.3.linear_retrained_for_rosetta < ab0d15f787c8ac8d5f1e543d2c88fe47 ./scoring/ProQ/ProQ2_model.4.linear < 3341039e28fc9f147d084794697b391d ./scoring/ProQ/ProQ2_model.4.linear_retrained_for_rosetta < 3bbac55e95c6a4d38b4810b67963bcfd ./scoring/ProQ/ProQ2_model.5.linear < 01a7de299589a46358f60286eca822d0 ./scoring/ProQ/ProQ2_model.5.linear_retrained_for_rosetta < 0fe0e1b3af532f99b4da3a492bf2b57a ./scoring/ProQ/ProQM_model.1.linear < 3d54814b02d58500b04c4ecce4e07116 ./scoring/ProQ/ProQM_model.1.linear_retrained_for_rosetta < 1b77236f8fe9de8d594e6f4926fb2def ./scoring/ProQ/ProQM_model.2.linear < fa9965decc7e2c60b2b0bd7634d4e33c ./scoring/ProQ/ProQM_model.2.linear_retrained_for_rosetta < 9828dbf5666a9655d23a516ee6f5bdb0 ./scoring/ProQ/ProQM_model.3.linear < 9df5af8f76389d48d0b9603ac46a0b0e ./scoring/ProQ/ProQM_model.3.linear_retrained_for_rosetta < bd31a8383548cf9bf1f58856609f4076 ./scoring/ProQ/ProQM_model.4.linear < cdc21dfb17ff60b108d1b1c516b6d71d ./scoring/ProQ/ProQM_model.4.linear_retrained_for_rosetta < 5f7faeb8b729d9ebb7b60853efeac1ec ./scoring/ProQ/ProQM_model.5.linear < 1f76fe78d748f088efb6c0e045f748c2 ./scoring/ProQ/ProQM_model.5.linear_retrained_for_rosetta 22736d22715 < 71230722283633480b49b9eac4ecf4fd ./scoring/electron_density/README.txt 22738a22718 > 71230722283633480b49b9eac4ecf4fd ./scoring/electron_density/README.txt 22741d22720 < a9f67b4f3e9be688fb3d0ae62df295ff ./scoring/epr_deer/DEFAULT.txt 22742a22722 > a9f67b4f3e9be688fb3d0ae62df295ff ./scoring/epr_deer/DEFAULT.txt 22750a22731 > 157394c1ca67c93444b7961332729599 ./scoring/loop_close/6D_potentials/rna/loop_02/potential.bin.gz 22752a22734 > affbfcacb17b2d29cedf29819b1ace93 ./scoring/loop_close/6D_potentials/rna/loop_03/potential.bin.gz 22754a22737 > 5ec24ef9d568dfb0efce583adbf9ec53 ./scoring/loop_close/6D_potentials/rna/loop_04/potential.bin.gz 22756a22740 > ff6b99f7ee681e35ce3a0ef3726a2f8d ./scoring/loop_close/6D_potentials/rna/loop_05/potential.bin.gz 22758a22743 > 11340208c0dd7e1ec450de595b828b1d ./scoring/loop_close/6D_potentials/rna/loop_06/potential.bin.gz 22760a22746 > 79d3226aded06c74a82f05d77ce5648b ./scoring/loop_close/6D_potentials/rna/loop_07/potential.bin.gz 22771a22758,22777 > 0eab50f20995eec6e4d636fb0bf4976e ./scoring/ProQ/ProQ2_model.1.linear > 1b1c69169d45b3ad28e9733f62fff579 ./scoring/ProQ/ProQ2_model.1.linear_retrained_for_rosetta > c78b532f0bb399b1054d91ff79a689f2 ./scoring/ProQ/ProQ2_model.2.linear > 8a26e4be50d2a6fa88c987889de213f7 ./scoring/ProQ/ProQ2_model.2.linear_retrained_for_rosetta > a07596265fd4dcbd8da86e43bfb41dc6 ./scoring/ProQ/ProQ2_model.3.linear > 5746e07cf65a2e68569d3cc1cef771e6 ./scoring/ProQ/ProQ2_model.3.linear_retrained_for_rosetta > ab0d15f787c8ac8d5f1e543d2c88fe47 ./scoring/ProQ/ProQ2_model.4.linear > 3341039e28fc9f147d084794697b391d ./scoring/ProQ/ProQ2_model.4.linear_retrained_for_rosetta > 3bbac55e95c6a4d38b4810b67963bcfd ./scoring/ProQ/ProQ2_model.5.linear > 01a7de299589a46358f60286eca822d0 ./scoring/ProQ/ProQ2_model.5.linear_retrained_for_rosetta > 0fe0e1b3af532f99b4da3a492bf2b57a ./scoring/ProQ/ProQM_model.1.linear > 3d54814b02d58500b04c4ecce4e07116 ./scoring/ProQ/ProQM_model.1.linear_retrained_for_rosetta > 1b77236f8fe9de8d594e6f4926fb2def ./scoring/ProQ/ProQM_model.2.linear > fa9965decc7e2c60b2b0bd7634d4e33c ./scoring/ProQ/ProQM_model.2.linear_retrained_for_rosetta > 9828dbf5666a9655d23a516ee6f5bdb0 ./scoring/ProQ/ProQM_model.3.linear > 9df5af8f76389d48d0b9603ac46a0b0e ./scoring/ProQ/ProQM_model.3.linear_retrained_for_rosetta > bd31a8383548cf9bf1f58856609f4076 ./scoring/ProQ/ProQM_model.4.linear > cdc21dfb17ff60b108d1b1c516b6d71d ./scoring/ProQ/ProQM_model.4.linear_retrained_for_rosetta > 5f7faeb8b729d9ebb7b60853efeac1ec ./scoring/ProQ/ProQM_model.5.linear > 1f76fe78d748f088efb6c0e045f748c2 ./scoring/ProQ/ProQM_model.5.linear_retrained_for_rosetta 22778d22783 < 5f1ebf0abb707550e1311bd28a5dbf7e ./scoring/rna/chem_map_lores/dms/ade_lores_WC_protected_logstats.txt 22779a22785 > 5f1ebf0abb707550e1311bd28a5dbf7e ./scoring/rna/chem_map_lores/dms/ade_lores_WC_protected_logstats.txt 22787d22792 < b0fd3cdc9caacb7f15fd92021f8747da ./scoring/rna/chem_shift_larmor_d/larmord_noweight.txt 22788a22794 > b0fd3cdc9caacb7f15fd92021f8747da ./scoring/rna/chem_shift_larmor_d/larmord_noweight.txt 22808,22809d22813 < f9045a3baf02361a7f5627c413ab4b30 ./scoring/rna/rnp_atom_vdw_min_distances.txt < 26b4f508673601c1534a19cd9767a5bc ./scoring/rna/rnp_atom_vdw_min_distances_reformat_MIN.txt 22811c22815,22816 < 3e18fb3bb077c745fd643cdfe2c72960 ./scoring/rna/rnp_backbone_potential.txt --- > 26b4f508673601c1534a19cd9767a5bc ./scoring/rna/rnp_atom_vdw_min_distances_reformat_MIN.txt > f9045a3baf02361a7f5627c413ab4b30 ./scoring/rna/rnp_atom_vdw_min_distances.txt 22813c22818 < c8e038ec054bffe44feda832b6fa2c03 ./scoring/rna/rnp_base_pair.txt --- > 3e18fb3bb077c745fd643cdfe2c72960 ./scoring/rna/rnp_backbone_potential.txt 22815c22820 < c9972c64ff765559df51cdf10dfa5b10 ./scoring/rna/rnp_pair_dist_potential_renorm.txt --- > c8e038ec054bffe44feda832b6fa2c03 ./scoring/rna/rnp_base_pair.txt 22817c22822 < c4f69457862baad7c29bb10abd36bccb ./scoring/rna/rnp_pair_protein_buried.txt --- > c9972c64ff765559df51cdf10dfa5b10 ./scoring/rna/rnp_pair_dist_potential_renorm.txt 22819c22824 < a2772738c02b0be2a693a6edd8ba2df7 ./scoring/rna/rnp_pair_protein_notburied.txt --- > c4f69457862baad7c29bb10abd36bccb ./scoring/rna/rnp_pair_protein_buried.txt 22820a22826 > a2772738c02b0be2a693a6edd8ba2df7 ./scoring/rna/rnp_pair_protein_notburied.txt 22822,22835d22827 < 04edb5414b8baccd045a9804bccaeb37 ./scoring/rna/suite_potentials/Denovo_60/centers.txt < ab1ad2f916eb69bedb2c029bbfd92100 ./scoring/rna/suite_potentials/Denovo_60/inv_cov.txt < 5759400c908347f600d7f023b7622750 ./scoring/rna/suite_potentials/README < 0a8612093a1843ecd28241fd252cf2de ./scoring/rna/suite_potentials/Richardson/centers.txt < ea9655ff2f2c6f8bf1a1368547bfe843 ./scoring/rna/suite_potentials/Richardson/inv_cov.txt < c1ffaebc523b62c98c1020b4ae2060c1 ./scoring/rna/suite_potentials/Richardson_refit/centers.txt < 6830e325aa53103e83426f7b59fc9838 ./scoring/rna/suite_potentials/Richardson_refit/inv_cov.txt < d558793c65457f372385ad0f7a7c6e91 ./scoring/rna/suite_potentials/Richardson_suites.txt < 5cc6f7fdc0fee5b4140bb23d3ff07cab ./scoring/rna/suite_potentials/test/1z_6n_2[_bonus/centers.txt < ea9655ff2f2c6f8bf1a1368547bfe843 ./scoring/rna/suite_potentials/test/1z_6n_2[_bonus/inv_cov.txt < 0339cc4408bf89ccaf0710359f2611b8 ./scoring/rna/suite_potentials/test/1z_6n_2[_refit_bonus/centers.txt < 6830e325aa53103e83426f7b59fc9838 ./scoring/rna/suite_potentials/test/1z_6n_2[_refit_bonus/inv_cov.txt < 44f1dd9d8618d3533080776f0f41f4dc ./scoring/rna/suite_potentials/tna_suite_potential/centers.txt < e211a52d93316036188421b7ac49c5fe ./scoring/rna/suite_potentials/tna_suite_potential/inv_cov.txt 22846d22837 < af8926f69a68e130b50e1038d5e4741a ./scoring/rna/suiteness_bonus/test/all_suites/centers.txt 22848a22840 > af8926f69a68e130b50e1038d5e4741a ./scoring/rna/suiteness_bonus/test/all_suites/centers.txt 22850a22843,22856 > 04edb5414b8baccd045a9804bccaeb37 ./scoring/rna/suite_potentials/Denovo_60/centers.txt > ab1ad2f916eb69bedb2c029bbfd92100 ./scoring/rna/suite_potentials/Denovo_60/inv_cov.txt > 5759400c908347f600d7f023b7622750 ./scoring/rna/suite_potentials/README > 0a8612093a1843ecd28241fd252cf2de ./scoring/rna/suite_potentials/Richardson/centers.txt > ea9655ff2f2c6f8bf1a1368547bfe843 ./scoring/rna/suite_potentials/Richardson/inv_cov.txt > c1ffaebc523b62c98c1020b4ae2060c1 ./scoring/rna/suite_potentials/Richardson_refit/centers.txt > 6830e325aa53103e83426f7b59fc9838 ./scoring/rna/suite_potentials/Richardson_refit/inv_cov.txt > d558793c65457f372385ad0f7a7c6e91 ./scoring/rna/suite_potentials/Richardson_suites.txt > 5cc6f7fdc0fee5b4140bb23d3ff07cab ./scoring/rna/suite_potentials/test/1z_6n_2[_bonus/centers.txt > ea9655ff2f2c6f8bf1a1368547bfe843 ./scoring/rna/suite_potentials/test/1z_6n_2[_bonus/inv_cov.txt > 0339cc4408bf89ccaf0710359f2611b8 ./scoring/rna/suite_potentials/test/1z_6n_2[_refit_bonus/centers.txt > 6830e325aa53103e83426f7b59fc9838 ./scoring/rna/suite_potentials/test/1z_6n_2[_refit_bonus/inv_cov.txt > 44f1dd9d8618d3533080776f0f41f4dc ./scoring/rna/suite_potentials/tna_suite_potential/centers.txt > e211a52d93316036188421b7ac49c5fe ./scoring/rna/suite_potentials/tna_suite_potential/inv_cov.txt 22873d22878 < 26a45a2ee6efac6b8c00c36ca4b7f19a ./scoring/rna/torsion_potentials/FINAL_Mar_24_2010_new_delta_zeta_chi/chi_north_potential.txt 22876c22881 < 2a2ccc430956224f9d75ee58972cd4cb ./scoring/rna/torsion_potentials/FINAL_Mar_24_2010_new_delta_zeta_chi/chi_south_potential.txt --- > 26a45a2ee6efac6b8c00c36ca4b7f19a ./scoring/rna/torsion_potentials/FINAL_Mar_24_2010_new_delta_zeta_chi/chi_north_potential.txt 22878a22884 > 2a2ccc430956224f9d75ee58972cd4cb ./scoring/rna/torsion_potentials/FINAL_Mar_24_2010_new_delta_zeta_chi/chi_south_potential.txt 22891,22947d22896 < 36c8b083d72a7051a1db7ced136f02ce ./scoring/rna/torsion_potentials/RNA09_based_2012_new/alpha_potential.txt < e9390322361271fa6c44ca787b48407f ./scoring/rna/torsion_potentials/RNA09_based_2012_new/beta_potential.txt < 7a2233b6c32afba8541a25f1ad0606e7 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/chi_purine_north_potential.txt < 4e2b9fc69873dd235534d56e4e9ee078 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/chi_purine_south_potential.txt < 59640e2758015d77642c8bdbedd6aaa1 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/chi_pyrimidine_north_potential.txt < 27bf6063953ccd890b3eaaef98e1b0fc ./scoring/rna/torsion_potentials/RNA09_based_2012_new/chi_pyrimidine_south_potential.txt < b5bc0921990bf8214ac1c2b9b91f9280 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/delta_north_potential.txt < 0060de0ad36ce4a123d266074325773d ./scoring/rna/torsion_potentials/RNA09_based_2012_new/delta_south_potential.txt < c61bf2161bf5674a0fd3f1948aad797c ./scoring/rna/torsion_potentials/RNA09_based_2012_new/epsilon_north_potential.txt < c835c60e6f01055d17b3d6a947903152 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/epsilon_south_potential.txt < 741f37b26005c914bf4d5e188c4b407b ./scoring/rna/torsion_potentials/RNA09_based_2012_new/gamma_potential.txt < 3485a2c66c1836824a05ad27e824190d ./scoring/rna/torsion_potentials/RNA09_based_2012_new/nu1_north_potential.txt < 2c6a144742a3a4b7525b003114736644 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/nu1_south_potential.txt < 876e5b9f2f327ec0b0472c465a103e11 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/nu2_north_potential.txt < 54efe1be760b3e044de9ad1a3f4de085 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/nu2_south_potential.txt < 1598da488a538c9db3ef15353703c49c ./scoring/rna/torsion_potentials/RNA09_based_2012_new/o2h_north_potential.txt < 4f403e9982b5b9845332655828c2ca9d ./scoring/rna/torsion_potentials/RNA09_based_2012_new/o2h_south_potential.txt < 93dd8a2e813b8007f5f914874f487741 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/zeta_alpha_ap_potential.txt < e6aeeab7b0e0f4fcf26dc05b2c7b60a2 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/zeta_alpha_sc_minus_potential.txt < e375a3e0e254dd3b22d0e4ec944a1cc9 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/zeta_alpha_sc_plus_potential.txt < 8b5990d9722fe8d3528d7f15930fd6ae ./scoring/rna/torsion_potentials/RNA11_based_new/alpha_potential.txt < dbeab9e6b8c2d8de541e3238920bf3e4 ./scoring/rna/torsion_potentials/RNA11_based_new/beta_potential.txt < 95a51c2087dbaaf5a8aeed21c7eeb021 ./scoring/rna/torsion_potentials/RNA11_based_new/chi_purine_north_potential.txt < 8a68f48db288a6ef183917cf12bdd18e ./scoring/rna/torsion_potentials/RNA11_based_new/chi_purine_south_potential.txt < 3a77bdb9dc669965e503ea9e574d3866 ./scoring/rna/torsion_potentials/RNA11_based_new/chi_pyrimidine_north_potential.txt < f8b207b0c102d1f1aee1eb471747cf00 ./scoring/rna/torsion_potentials/RNA11_based_new/chi_pyrimidine_south_potential.txt < 58b41a69a02bfd1659838bfcef62e857 ./scoring/rna/torsion_potentials/RNA11_based_new/delta_north_potential.txt < 050dbfd7d05b5ba4e46116b2ed1e89ee ./scoring/rna/torsion_potentials/RNA11_based_new/delta_south_potential.txt < b056776950c4736f1e374df7b4d70fd4 ./scoring/rna/torsion_potentials/RNA11_based_new/epsilon_north_potential.txt < 6d100d8b9397ae140b4584b9e9a74ff0 ./scoring/rna/torsion_potentials/RNA11_based_new/epsilon_south_potential.txt < bc2dc59e142b5e9452bf60b45d3bafcd ./scoring/rna/torsion_potentials/RNA11_based_new/gamma_potential.txt < 3485a2c66c1836824a05ad27e824190d ./scoring/rna/torsion_potentials/RNA11_based_new/nu1_north_potential.txt < 2c6a144742a3a4b7525b003114736644 ./scoring/rna/torsion_potentials/RNA11_based_new/nu1_south_potential.txt < 876e5b9f2f327ec0b0472c465a103e11 ./scoring/rna/torsion_potentials/RNA11_based_new/nu2_north_potential.txt < 54efe1be760b3e044de9ad1a3f4de085 ./scoring/rna/torsion_potentials/RNA11_based_new/nu2_south_potential.txt < faef7c8622a5c10525dfc5910d233ff4 ./scoring/rna/torsion_potentials/RNA11_based_new/o2h_north_potential.txt < 4d6db9408bd97ccbee0d8e08bafeb55e ./scoring/rna/torsion_potentials/RNA11_based_new/o2h_south_potential.txt < 030c9d8a4f34539d31bc740ab4d3239f ./scoring/rna/torsion_potentials/RNA11_based_new/zeta_alpha_ap_potential.txt < ae37b0a4ed5d523036926db2df765447 ./scoring/rna/torsion_potentials/RNA11_based_new/zeta_alpha_sc_minus_potential.txt < 220bffa127c962f05708e41b1d0b39d1 ./scoring/rna/torsion_potentials/RNA11_based_new/zeta_alpha_sc_plus_potential.txt < c8b383b9af8cc624a86ba35db1868ea2 ./scoring/rna/torsion_potentials/ps2009/alpha_potential.txt < 1aacf82605d2f5778b2a0520b497a308 ./scoring/rna/torsion_potentials/ps2009/beta_potential.txt < 6ebfb94cee1ba02a4cd4638e7ae3627d ./scoring/rna/torsion_potentials/ps2009/chi_north_potential.txt < b6897570a2fb1c2df99be69915776625 ./scoring/rna/torsion_potentials/ps2009/chi_south_potential.txt < 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/delta_north_potential.txt < 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/delta_south_potential.txt < 30603f6e9857a60bb58876926873921f ./scoring/rna/torsion_potentials/ps2009/epsilon_north_potential.txt < be6ff7dc8fce85e70b6f3106953094a1 ./scoring/rna/torsion_potentials/ps2009/epsilon_south_potential.txt < c959a88181e6c60efe0eae3a68b93bcf ./scoring/rna/torsion_potentials/ps2009/gamma_potential.txt < 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/nu1_north_potential.txt < 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/nu1_south_potential.txt < 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/nu2_north_potential.txt < 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/nu2_south_potential.txt < 22be9a37cebf82e2484a16ffc3f6e723 ./scoring/rna/torsion_potentials/ps2009/zeta_alpha_ap_potential.txt < cbf7cf1885fe65a3626b845eda1814c5 ./scoring/rna/torsion_potentials/ps2009/zeta_alpha_sc_minus_potential.txt < 98e3b5e3e35a95eaf7f2d96cbfc63367 ./scoring/rna/torsion_potentials/ps2009/zeta_alpha_sc_plus_potential.txt < 8bf650654bb6c7e30d2b1d086e948f1a ./scoring/rna/torsion_potentials/ps_03242010/README.txt 22962a22912 > 8bf650654bb6c7e30d2b1d086e948f1a ./scoring/rna/torsion_potentials/ps_03242010/README.txt 22983a22934,22949 > c8b383b9af8cc624a86ba35db1868ea2 ./scoring/rna/torsion_potentials/ps2009/alpha_potential.txt > 1aacf82605d2f5778b2a0520b497a308 ./scoring/rna/torsion_potentials/ps2009/beta_potential.txt > 6ebfb94cee1ba02a4cd4638e7ae3627d ./scoring/rna/torsion_potentials/ps2009/chi_north_potential.txt > b6897570a2fb1c2df99be69915776625 ./scoring/rna/torsion_potentials/ps2009/chi_south_potential.txt > 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/delta_north_potential.txt > 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/delta_south_potential.txt > 30603f6e9857a60bb58876926873921f ./scoring/rna/torsion_potentials/ps2009/epsilon_north_potential.txt > be6ff7dc8fce85e70b6f3106953094a1 ./scoring/rna/torsion_potentials/ps2009/epsilon_south_potential.txt > c959a88181e6c60efe0eae3a68b93bcf ./scoring/rna/torsion_potentials/ps2009/gamma_potential.txt > 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/nu1_north_potential.txt > 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/nu1_south_potential.txt > 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/nu2_north_potential.txt > 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/nu2_south_potential.txt > 22be9a37cebf82e2484a16ffc3f6e723 ./scoring/rna/torsion_potentials/ps2009/zeta_alpha_ap_potential.txt > cbf7cf1885fe65a3626b845eda1814c5 ./scoring/rna/torsion_potentials/ps2009/zeta_alpha_sc_minus_potential.txt > 98e3b5e3e35a95eaf7f2d96cbfc63367 ./scoring/rna/torsion_potentials/ps2009/zeta_alpha_sc_plus_potential.txt 23015a22982,23021 > 36c8b083d72a7051a1db7ced136f02ce ./scoring/rna/torsion_potentials/RNA09_based_2012_new/alpha_potential.txt > e9390322361271fa6c44ca787b48407f ./scoring/rna/torsion_potentials/RNA09_based_2012_new/beta_potential.txt > 7a2233b6c32afba8541a25f1ad0606e7 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/chi_purine_north_potential.txt > 4e2b9fc69873dd235534d56e4e9ee078 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/chi_purine_south_potential.txt > 59640e2758015d77642c8bdbedd6aaa1 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/chi_pyrimidine_north_potential.txt > 27bf6063953ccd890b3eaaef98e1b0fc ./scoring/rna/torsion_potentials/RNA09_based_2012_new/chi_pyrimidine_south_potential.txt > b5bc0921990bf8214ac1c2b9b91f9280 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/delta_north_potential.txt > 0060de0ad36ce4a123d266074325773d ./scoring/rna/torsion_potentials/RNA09_based_2012_new/delta_south_potential.txt > c61bf2161bf5674a0fd3f1948aad797c ./scoring/rna/torsion_potentials/RNA09_based_2012_new/epsilon_north_potential.txt > c835c60e6f01055d17b3d6a947903152 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/epsilon_south_potential.txt > 741f37b26005c914bf4d5e188c4b407b ./scoring/rna/torsion_potentials/RNA09_based_2012_new/gamma_potential.txt > 3485a2c66c1836824a05ad27e824190d ./scoring/rna/torsion_potentials/RNA09_based_2012_new/nu1_north_potential.txt > 2c6a144742a3a4b7525b003114736644 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/nu1_south_potential.txt > 876e5b9f2f327ec0b0472c465a103e11 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/nu2_north_potential.txt > 54efe1be760b3e044de9ad1a3f4de085 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/nu2_south_potential.txt > 1598da488a538c9db3ef15353703c49c ./scoring/rna/torsion_potentials/RNA09_based_2012_new/o2h_north_potential.txt > 4f403e9982b5b9845332655828c2ca9d ./scoring/rna/torsion_potentials/RNA09_based_2012_new/o2h_south_potential.txt > 93dd8a2e813b8007f5f914874f487741 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/zeta_alpha_ap_potential.txt > e6aeeab7b0e0f4fcf26dc05b2c7b60a2 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/zeta_alpha_sc_minus_potential.txt > e375a3e0e254dd3b22d0e4ec944a1cc9 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/zeta_alpha_sc_plus_potential.txt > 8b5990d9722fe8d3528d7f15930fd6ae ./scoring/rna/torsion_potentials/RNA11_based_new/alpha_potential.txt > dbeab9e6b8c2d8de541e3238920bf3e4 ./scoring/rna/torsion_potentials/RNA11_based_new/beta_potential.txt > 95a51c2087dbaaf5a8aeed21c7eeb021 ./scoring/rna/torsion_potentials/RNA11_based_new/chi_purine_north_potential.txt > 8a68f48db288a6ef183917cf12bdd18e ./scoring/rna/torsion_potentials/RNA11_based_new/chi_purine_south_potential.txt > 3a77bdb9dc669965e503ea9e574d3866 ./scoring/rna/torsion_potentials/RNA11_based_new/chi_pyrimidine_north_potential.txt > f8b207b0c102d1f1aee1eb471747cf00 ./scoring/rna/torsion_potentials/RNA11_based_new/chi_pyrimidine_south_potential.txt > 58b41a69a02bfd1659838bfcef62e857 ./scoring/rna/torsion_potentials/RNA11_based_new/delta_north_potential.txt > 050dbfd7d05b5ba4e46116b2ed1e89ee ./scoring/rna/torsion_potentials/RNA11_based_new/delta_south_potential.txt > b056776950c4736f1e374df7b4d70fd4 ./scoring/rna/torsion_potentials/RNA11_based_new/epsilon_north_potential.txt > 6d100d8b9397ae140b4584b9e9a74ff0 ./scoring/rna/torsion_potentials/RNA11_based_new/epsilon_south_potential.txt > bc2dc59e142b5e9452bf60b45d3bafcd ./scoring/rna/torsion_potentials/RNA11_based_new/gamma_potential.txt > 3485a2c66c1836824a05ad27e824190d ./scoring/rna/torsion_potentials/RNA11_based_new/nu1_north_potential.txt > 2c6a144742a3a4b7525b003114736644 ./scoring/rna/torsion_potentials/RNA11_based_new/nu1_south_potential.txt > 876e5b9f2f327ec0b0472c465a103e11 ./scoring/rna/torsion_potentials/RNA11_based_new/nu2_north_potential.txt > 54efe1be760b3e044de9ad1a3f4de085 ./scoring/rna/torsion_potentials/RNA11_based_new/nu2_south_potential.txt > faef7c8622a5c10525dfc5910d233ff4 ./scoring/rna/torsion_potentials/RNA11_based_new/o2h_north_potential.txt > 4d6db9408bd97ccbee0d8e08bafeb55e ./scoring/rna/torsion_potentials/RNA11_based_new/o2h_south_potential.txt > 030c9d8a4f34539d31bc740ab4d3239f ./scoring/rna/torsion_potentials/RNA11_based_new/zeta_alpha_ap_potential.txt > ae37b0a4ed5d523036926db2df765447 ./scoring/rna/torsion_potentials/RNA11_based_new/zeta_alpha_sc_minus_potential.txt > 220bffa127c962f05708e41b1d0b39d1 ./scoring/rna/torsion_potentials/RNA11_based_new/zeta_alpha_sc_plus_potential.txt 23041,23092d23046 < ffc59659040e28a32c96d0591748bf34 ./scoring/score_functions/DDPscore/interface_ddp_score.txt < a92ea0459f04a4b57014fd42ec6903ad ./scoring/score_functions/EnvPairPotential/cbeta_den.txt < c88326ee8ae1439943c7d73da0212111 ./scoring/score_functions/EnvPairPotential/cenpack_log.txt < 10ab8f3057c520686c60f02bd466c995 ./scoring/score_functions/EnvPairPotential/env_log.txt < 1b587cc938e07b8f39f8cbf4b89cb072 ./scoring/score_functions/EnvPairPotential/pair_log.txt < 6ead1d93543251077cae07901e0b4e18 ./scoring/score_functions/InterchainPotential/interchain_env_log.txt < 46a7774006cddf280bff3df87ad41260 ./scoring/score_functions/InterchainPotential/interchain_pair_log.txt < 81d9606233578fa646da1ac57572981a ./scoring/score_functions/MembranePotential/AsymEZ_CB.txt < f0e5915e4f30db715405e80bbb69ac75 ./scoring/score_functions/MembranePotential/AsymEZ_CB_Derivs.txt < d215240467bb106d9487926cbfc0d200 ./scoring/score_functions/MembranePotential/AsymEZ_CG.txt < 0358edae07a5897a0f2ca1c8826907c1 ./scoring/score_functions/MembranePotential/AsymEZ_CG_Derivs.txt < 26fcb8cba9f293491c34990bea5b33e3 ./scoring/score_functions/MembranePotential/CEN10_Menv_smooth_log.txt < 4765e6290c39ce35463db5961e133d18 ./scoring/score_functions/MembranePotential/CEN10_mem_env_log.txt < 0fc7c0849a9dea70e44a79347f938afc ./scoring/score_functions/MembranePotential/CEN6_mem_env_log.txt < f956e8ac1a4dbadaefe5d69891c7896e ./scoring/score_functions/MembranePotential/ELazaridis_cen_polynom_table.txt < fe3769ce8b450c89b620c05f9b04a106 ./scoring/score_functions/MembranePotential/ELazaridis_polynom_table.txt < dcdf1cb689fd5108c99a78ebfd66e4eb ./scoring/score_functions/MembranePotential/elazar_spline_mp_span_ins_fa.txt < 953ff23b1b30bf4608f5b05b67ed3eab ./scoring/score_functions/MembranePotential/mem_env_log.txt < a5209b0b2d8a76f8898e7f2dac443499 ./scoring/score_functions/MembranePotential/mem_pair_log.txt < 4a80bcb58402b65a00ce48944563aa92 ./scoring/score_functions/MembranePotential/memcbeta_den.txt < 3b6852a184ce67e5f9cc8ddf57171099 ./scoring/score_functions/MembranePotential/spline_test_cen.txt < fe84df98959bb356ff1bfa50c00fc88b ./scoring/score_functions/MembranePotential/spline_test_fa.txt < eaa4499c741b2101b1aa0d911c3f374c ./scoring/score_functions/NV/neighbor_vector_score.histogram < becdd56df1ac23c90d0536326fcb2989 ./scoring/score_functions/P_AA_SS_cen6/P_AA_SS.txt < 9d2b10c3e4b248a2a892136c8bc15d6a ./scoring/score_functions/P_AA_SS_cen6/P_AA_SS_cen6.txt < 6d7e2505c3e46a15e0da459570176401 ./scoring/score_functions/P_AA_pp/P_AA < dbde0178006bd238ad889a09ab7d756f ./scoring/score_functions/P_AA_pp/P_AA_n < 4ba7da8cd9c178f99689828aafb1ee71 ./scoring/score_functions/P_AA_pp/P_AA_pp < 2c15072c1fb1a781e51bb9d2771a97b5 ./scoring/score_functions/P_AA_pp/P_AA_pp_08.2009 < 48acd1dc343d0cd660719368f4d7ad59 ./scoring/score_functions/P_AA_pp/Paa < 826c68782f2b8a8b128a0a5f9478f085 ./scoring/score_functions/P_AA_pp/Paa_n < 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/10deg/AcademicLicensePropensityMap.txt < b1e15266c861948f12ca9aa5979218ae ./scoring/score_functions/P_AA_pp/shapovalov/10deg/Taken.From.txt < 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa131/AcademicLicensePropensityMap.txt < 1c24030a571145ec8febc3303611dacd ./scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa131/a20.prop < 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa50/AcademicLicensePropensityMap.txt < 72c92fee7f8406bece7670f96bf43171 ./scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa50/a20.prop < 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/AcademicLicensePropensityMap.txt < f682494cd608556260b5f052aa87f9b9 ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/Taken.From.txt < 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/kappa131/AcademicLicensePropensityMap.txt < 9aac30c61fbedc7a523acad0f34d5284 ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/kappa131/a20.prop < 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/kappa50/AcademicLicensePropensityMap.txt < aae8f09f541e7444aa2f1bbe76c7388b ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/kappa50/a20.prop < 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/AcademicLicensePropensityMap.txt < 9fca8b2c5743394d96f5e5113a56fa17 ./scoring/score_functions/P_AA_pp/shapovalov/argumentsExample.shapovalov.txt < 59cc218d3aa4a959d548d4be40d1c348 ./scoring/score_functions/PairEPotential/pdb_pair_stats_fine < b38dd32df507671463d41f82a1cf7062 ./scoring/score_functions/SecondaryStructurePotential/phi.theta.36.HS.resmooth < e09326496a7d664bb8174736f5f2ce5f ./scoring/score_functions/SecondaryStructurePotential/phi.theta.36.SS.resmooth < 6212a94d503152d8d52db10ebd31f9cf ./scoring/score_functions/SecondaryStructurePotential/rsigma_dot.txt < c6dccb2e49c05862d1e9ddbfce25abe3 ./scoring/score_functions/SurfacePotential/average_hASA_by_res_and_neighbor.txt < b1a432b3b104d221498d5e3333123511 ./scoring/score_functions/SurfacePotential/hpatch_score.txt < 1e73fba906f4aa4a62680420c02adb6c ./scoring/score_functions/SurfacePotential/surface_score.txt 23104a23059 > 583ba34c3b6710de7844a86be8e50da5 ./scoring/score_functions/bondlength_bondangle_beta/default-improper.txt 23110d23064 < 583ba34c3b6710de7844a86be8e50da5 ./scoring/score_functions/bondlength_bondangle_beta/default-improper.txt 23122d23075 < c5532c9df532aed9b7a36c089b97b595 ./scoring/score_functions/carbon_hbond/ch_o_bond_potential.dat 23123a23077 > c5532c9df532aed9b7a36c089b97b595 ./scoring/score_functions/carbon_hbond/ch_o_bond_potential.dat 23137,23138c23091 < c7ddfac4b8fbad22b185a1d116af2a66 ./scoring/score_functions/disulfides/centroid_CaCbCbCa_dihedral_score < f3c368eabd4f6ac108c47a474005e692 ./scoring/score_functions/disulfides/centroid_CaCbCb_angle_score --- > ffc59659040e28a32c96d0591748bf34 ./scoring/score_functions/DDPscore/interface_ddp_score.txt 23139a23093,23094 > f3c368eabd4f6ac108c47a474005e692 ./scoring/score_functions/disulfides/centroid_CaCbCb_angle_score > c7ddfac4b8fbad22b185a1d116af2a66 ./scoring/score_functions/disulfides/centroid_CaCbCbCa_dihedral_score 23145a23101,23104 > a92ea0459f04a4b57014fd42ec6903ad ./scoring/score_functions/EnvPairPotential/cbeta_den.txt > c88326ee8ae1439943c7d73da0212111 ./scoring/score_functions/EnvPairPotential/cenpack_log.txt > 10ab8f3057c520686c60f02bd466c995 ./scoring/score_functions/EnvPairPotential/env_log.txt > 1b587cc938e07b8f39f8cbf4b89cb072 ./scoring/score_functions/EnvPairPotential/pair_log.txt 23164,23193d23122 < 1c9064adf9530e4d9d7bbc9bd93974d3 ./scoring/score_functions/facts/GB_AA_PLACEHOLDER.params < 049dc8783b26f13fa1e99a87af22a2bd ./scoring/score_functions/facts/GDP.params < 3eda2aca057086c42a271d37e4b2ae85 ./scoring/score_functions/facts/GLN.params < 6b1f26f4f5f2723de060402f1cb5d4f5 ./scoring/score_functions/facts/GLU.params < d5643a68ef20119a93b78f7f75d43610 ./scoring/score_functions/facts/GLU_mod.params < e1a2e2fbe63401cd9662a5342cd1d4d1 ./scoring/score_functions/facts/GLY.params < e1a2e2fbe63401cd9662a5342cd1d4d1 ./scoring/score_functions/facts/GLY_org.params < 11a779981b3170b68cc7c1f8570deec6 ./scoring/score_functions/facts/GNP.params < 107356d673146578aadcfc0e38c02168 ./scoring/score_functions/facts/GTP.params < 2c898598ab7ed3e8297ccb5d3dece141 ./scoring/score_functions/facts/GUA.params < 04c6d14ed3cbbe80db3e6325095f0cb8 ./scoring/score_functions/facts/HIS.params < dbe3daf01b4f5973a4542d877be1b31d ./scoring/score_functions/facts/HIS_D.params < 94fc61c2f0d4fccf0cda0f52e5ddcda9 ./scoring/score_functions/facts/ILE.params < 11b92590398223e3afb5cabab589075a ./scoring/score_functions/facts/LEU.params < 0797646635f0307a411dd8b072feab88 ./scoring/score_functions/facts/LYS.params < 582184f61af20eed25e22d35d370e698 ./scoring/score_functions/facts/LYX.params < 517268df7e9ba6407dde376cbab25ea6 ./scoring/score_functions/facts/MET.params < ab1797ab3533e827da69cf9541e5d367 ./scoring/score_functions/facts/PHE.params < 6289e6f3378223139039787e208c6835 ./scoring/score_functions/facts/PRO.params < 41d56219b637d6b1ecdd5b35f6aa6c3c ./scoring/score_functions/facts/SER.params < 0a02f2045a7e81696a54bfb9b8a780bc ./scoring/score_functions/facts/SUCK.params < cd708968535356deb4caa9b56b9b934b ./scoring/score_functions/facts/THR.params < 692d9114b400fc4a3b9588754cfc9a1a ./scoring/score_functions/facts/THY.params < 7370677253f34f8f68e228fe17ad0165 ./scoring/score_functions/facts/TP3.params < ac6ea73705ea5702479aa0a852e91f38 ./scoring/score_functions/facts/TP5.params < 9441483d072334b61e0a74a146d76f24 ./scoring/score_functions/facts/TRP.params < e359e69757c97244ea7ed4d32e38e849 ./scoring/score_functions/facts/TYR.params < 616c96597e59781878ff1755a3d802b0 ./scoring/score_functions/facts/VAL.params < 94a3f6d337bd3c8a4c7e4ed24be6805a ./scoring/score_functions/facts/VRT.params < 05fe5ac33b0d7759d3fea1eada75e728 ./scoring/score_functions/facts/VRT1.params 23215d23143 < 04c6d14ed3cbbe80db3e6325095f0cb8 ./scoring/score_functions/facts/eff/HIS.params 23216a23145 > 04c6d14ed3cbbe80db3e6325095f0cb8 ./scoring/score_functions/facts/eff/HIS.params 23233d23161 < 94a3f6d337bd3c8a4c7e4ed24be6805a ./scoring/score_functions/facts/eff/VRT.params 23234a23163,23180 > 94a3f6d337bd3c8a4c7e4ed24be6805a ./scoring/score_functions/facts/eff/VRT.params > 1c9064adf9530e4d9d7bbc9bd93974d3 ./scoring/score_functions/facts/GB_AA_PLACEHOLDER.params > 049dc8783b26f13fa1e99a87af22a2bd ./scoring/score_functions/facts/GDP.params > 3eda2aca057086c42a271d37e4b2ae85 ./scoring/score_functions/facts/GLN.params > d5643a68ef20119a93b78f7f75d43610 ./scoring/score_functions/facts/GLU_mod.params > 6b1f26f4f5f2723de060402f1cb5d4f5 ./scoring/score_functions/facts/GLU.params > e1a2e2fbe63401cd9662a5342cd1d4d1 ./scoring/score_functions/facts/GLY_org.params > e1a2e2fbe63401cd9662a5342cd1d4d1 ./scoring/score_functions/facts/GLY.params > 11a779981b3170b68cc7c1f8570deec6 ./scoring/score_functions/facts/GNP.params > 107356d673146578aadcfc0e38c02168 ./scoring/score_functions/facts/GTP.params > 2c898598ab7ed3e8297ccb5d3dece141 ./scoring/score_functions/facts/GUA.params > dbe3daf01b4f5973a4542d877be1b31d ./scoring/score_functions/facts/HIS_D.params > 04c6d14ed3cbbe80db3e6325095f0cb8 ./scoring/score_functions/facts/HIS.params > 94fc61c2f0d4fccf0cda0f52e5ddcda9 ./scoring/score_functions/facts/ILE.params > 11b92590398223e3afb5cabab589075a ./scoring/score_functions/facts/LEU.params > 0797646635f0307a411dd8b072feab88 ./scoring/score_functions/facts/LYS.params > 582184f61af20eed25e22d35d370e698 ./scoring/score_functions/facts/LYX.params > 517268df7e9ba6407dde376cbab25ea6 ./scoring/score_functions/facts/MET.params 23250d23195 < 83861ca865e259de03fa813e8667f074 ./scoring/score_functions/facts/modified/GLU.params 23251a23197 > 83861ca865e259de03fa813e8667f074 ./scoring/score_functions/facts/modified/GLU.params 23256d23201 < f5c2c99a16d40e87553286f46ed8f8de ./scoring/score_functions/facts/modified/HIS.params 23257a23203 > f5c2c99a16d40e87553286f46ed8f8de ./scoring/score_functions/facts/modified/HIS.params 23274d23219 < 94a3f6d337bd3c8a4c7e4ed24be6805a ./scoring/score_functions/facts/modified/VRT.params 23275a23221,23225 > 94a3f6d337bd3c8a4c7e4ed24be6805a ./scoring/score_functions/facts/modified/VRT.params > ab1797ab3533e827da69cf9541e5d367 ./scoring/score_functions/facts/PHE.params > 6289e6f3378223139039787e208c6835 ./scoring/score_functions/facts/PRO.params > 41d56219b637d6b1ecdd5b35f6aa6c3c ./scoring/score_functions/facts/SER.params > 0a02f2045a7e81696a54bfb9b8a780bc ./scoring/score_functions/facts/SUCK.params 23291d23240 < 83861ca865e259de03fa813e8667f074 ./scoring/score_functions/facts/test/GLU.params 23293c23242 < e1a2e2fbe63401cd9662a5342cd1d4d1 ./scoring/score_functions/facts/test/GLY.params --- > 83861ca865e259de03fa813e8667f074 ./scoring/score_functions/facts/test/GLU.params 23294a23244 > e1a2e2fbe63401cd9662a5342cd1d4d1 ./scoring/score_functions/facts/test/GLY.params 23298d23247 < 04c6d14ed3cbbe80db3e6325095f0cb8 ./scoring/score_functions/facts/test/HIS.params 23299a23249 > 04c6d14ed3cbbe80db3e6325095f0cb8 ./scoring/score_functions/facts/test/HIS.params 23316d23265 < 94a3f6d337bd3c8a4c7e4ed24be6805a ./scoring/score_functions/facts/test/VRT.params 23317a23267,23276 > 94a3f6d337bd3c8a4c7e4ed24be6805a ./scoring/score_functions/facts/test/VRT.params > cd708968535356deb4caa9b56b9b934b ./scoring/score_functions/facts/THR.params > 692d9114b400fc4a3b9588754cfc9a1a ./scoring/score_functions/facts/THY.params > 7370677253f34f8f68e228fe17ad0165 ./scoring/score_functions/facts/TP3.params > ac6ea73705ea5702479aa0a852e91f38 ./scoring/score_functions/facts/TP5.params > 9441483d072334b61e0a74a146d76f24 ./scoring/score_functions/facts/TRP.params > e359e69757c97244ea7ed4d32e38e849 ./scoring/score_functions/facts/TYR.params > 616c96597e59781878ff1755a3d802b0 ./scoring/score_functions/facts/VAL.params > 05fe5ac33b0d7759d3fea1eada75e728 ./scoring/score_functions/facts/VRT1.params > 94a3f6d337bd3c8a4c7e4ed24be6805a ./scoring/score_functions/facts/VRT.params 23324d23282 < e92edbccceec88617fa7cd4f1d1d82f4 ./scoring/score_functions/hbonds/.gitignore 23329a23288 > c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/BBasSC_params/HBondWeightType.csv 23332d23290 < c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/BBasSC_params/HBondWeightType.csv 23336,23358d23293 < e86fd39b2d1e0d9f6a6cea7da797a61e ./scoring/score_functions/hbonds/His_Phil_fix/HBAccChemType.csv < 58b0399dfad260e4d83f9e4ffdd6e79c ./scoring/score_functions/hbonds/His_Phil_fix/HBAccHybridization.csv < 6e9cf337ed6cfe95910c436f9b1f2027 ./scoring/score_functions/hbonds/His_Phil_fix/HBDonChemType.csv < 610665b2060ab7849fc7adb31692cf45 ./scoring/score_functions/hbonds/His_Phil_fix/HBEval.csv < dd5e7bda7f93269fb1920419cb5e377e ./scoring/score_functions/hbonds/His_Phil_fix/HBFadeIntervals.csv < f93f89aec3344bef24b751914c65cded ./scoring/score_functions/hbonds/His_Phil_fix/HBPoly1D.csv < 84c04a12f436d4a2bdc3a075178a1cc3 ./scoring/score_functions/hbonds/His_Phil_fix/HBSeqSep.csv < c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/His_Phil_fix/HBondWeightType.csv < e98d94527ef2ec5869f6f5e73b2876ee ./scoring/score_functions/hbonds/His_Phil_fix/HybridizationType.csv < 99c5f0860366e119a5fd8db6a480f569 ./scoring/score_functions/hbonds/His_Phil_fix/README.txt < 7cbfb0a1f2a7a99c8d68e8c0ffac7381 ./scoring/score_functions/hbonds/His_Phil_fix/schema.sql < e86fd39b2d1e0d9f6a6cea7da797a61e ./scoring/score_functions/hbonds/OLF_params_4/HBAccChemType.csv < 58b0399dfad260e4d83f9e4ffdd6e79c ./scoring/score_functions/hbonds/OLF_params_4/HBAccHybridization.csv < 6e9cf337ed6cfe95910c436f9b1f2027 ./scoring/score_functions/hbonds/OLF_params_4/HBDonChemType.csv < c49fc81105b96e83d09354314b3e250d ./scoring/score_functions/hbonds/OLF_params_4/HBEval.csv < bcf0898dace174409d6b31bd860ac0f6 ./scoring/score_functions/hbonds/OLF_params_4/HBFadeIntervals.csv < 50627f26e3dc679f69da6934c6145097 ./scoring/score_functions/hbonds/OLF_params_4/HBPoly1D.csv < 84c04a12f436d4a2bdc3a075178a1cc3 ./scoring/score_functions/hbonds/OLF_params_4/HBSeqSep.csv < c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/OLF_params_4/HBondWeightType.csv < e98d94527ef2ec5869f6f5e73b2876ee ./scoring/score_functions/hbonds/OLF_params_4/HybridizationType.csv < 8d76dda2716236ee0a55a1d4e7f6ddf8 ./scoring/score_functions/hbonds/OLF_params_4/README.txt < e2b96ea445250681f6e518b94236429e ./scoring/score_functions/hbonds/OLF_params_4/params.db3 < 28dbcf8eddb68ae2fd7c5d788a7b8223 ./scoring/score_functions/hbonds/OLF_params_4/schema.sql 23363a23299 > c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/correct_no_lr_params/HBondWeightType.csv 23366d23301 < c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/correct_no_lr_params/HBondWeightType.csv 23374a23310 > c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/correct_params/HBondWeightType.csv 23377d23312 < c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/correct_params/HBondWeightType.csv 23385a23321 > c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/experimental_params/HBondWeightType.csv 23388d23323 < c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/experimental_params/HBondWeightType.csv 23396a23332 > c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/extended_BAH_params/HBondWeightType.csv 23399d23334 < c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/extended_BAH_params/HBondWeightType.csv 23402a23338 > e92edbccceec88617fa7cd4f1d1d82f4 ./scoring/score_functions/hbonds/.gitignore 23407a23344 > c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/helix_hb_06_2009/HBondWeightType.csv 23410d23346 < c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/helix_hb_06_2009/HBondWeightType.csv 23413a23350,23360 > e86fd39b2d1e0d9f6a6cea7da797a61e ./scoring/score_functions/hbonds/His_Phil_fix/HBAccChemType.csv > 58b0399dfad260e4d83f9e4ffdd6e79c ./scoring/score_functions/hbonds/His_Phil_fix/HBAccHybridization.csv > 6e9cf337ed6cfe95910c436f9b1f2027 ./scoring/score_functions/hbonds/His_Phil_fix/HBDonChemType.csv > 610665b2060ab7849fc7adb31692cf45 ./scoring/score_functions/hbonds/His_Phil_fix/HBEval.csv > dd5e7bda7f93269fb1920419cb5e377e ./scoring/score_functions/hbonds/His_Phil_fix/HBFadeIntervals.csv > c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/His_Phil_fix/HBondWeightType.csv > f93f89aec3344bef24b751914c65cded ./scoring/score_functions/hbonds/His_Phil_fix/HBPoly1D.csv > 84c04a12f436d4a2bdc3a075178a1cc3 ./scoring/score_functions/hbonds/His_Phil_fix/HBSeqSep.csv > e98d94527ef2ec5869f6f5e73b2876ee ./scoring/score_functions/hbonds/His_Phil_fix/HybridizationType.csv > 99c5f0860366e119a5fd8db6a480f569 ./scoring/score_functions/hbonds/His_Phil_fix/README.txt > 7cbfb0a1f2a7a99c8d68e8c0ffac7381 ./scoring/score_functions/hbonds/His_Phil_fix/schema.sql 23418a23366 > c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/newCHI_params/HBondWeightType.csv 23421d23368 < c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/newCHI_params/HBondWeightType.csv 23429a23377 > c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/newOH_params/HBondWeightType.csv 23432d23379 < c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/newOH_params/HBondWeightType.csv 23440a23388 > c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/no_lr_params/HBondWeightType.csv 23443d23390 < c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/no_lr_params/HBondWeightType.csv 23446a23394,23405 > e86fd39b2d1e0d9f6a6cea7da797a61e ./scoring/score_functions/hbonds/OLF_params_4/HBAccChemType.csv > 58b0399dfad260e4d83f9e4ffdd6e79c ./scoring/score_functions/hbonds/OLF_params_4/HBAccHybridization.csv > 6e9cf337ed6cfe95910c436f9b1f2027 ./scoring/score_functions/hbonds/OLF_params_4/HBDonChemType.csv > c49fc81105b96e83d09354314b3e250d ./scoring/score_functions/hbonds/OLF_params_4/HBEval.csv > bcf0898dace174409d6b31bd860ac0f6 ./scoring/score_functions/hbonds/OLF_params_4/HBFadeIntervals.csv > c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/OLF_params_4/HBondWeightType.csv > 50627f26e3dc679f69da6934c6145097 ./scoring/score_functions/hbonds/OLF_params_4/HBPoly1D.csv > 84c04a12f436d4a2bdc3a075178a1cc3 ./scoring/score_functions/hbonds/OLF_params_4/HBSeqSep.csv > e98d94527ef2ec5869f6f5e73b2876ee ./scoring/score_functions/hbonds/OLF_params_4/HybridizationType.csv > e2b96ea445250681f6e518b94236429e ./scoring/score_functions/hbonds/OLF_params_4/params.db3 > 8d76dda2716236ee0a55a1d4e7f6ddf8 ./scoring/score_functions/hbonds/OLF_params_4/README.txt > 28dbcf8eddb68ae2fd7c5d788a7b8223 ./scoring/score_functions/hbonds/OLF_params_4/schema.sql 23453a23413 > c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/ref2015_params/HBondWeightType.csv 23456d23415 < c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/ref2015_params/HBondWeightType.csv 23464a23424 > c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/score12_params/HBondWeightType.csv 23467d23426 < c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/score12_params/HBondWeightType.csv 23475a23435 > c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/sp2_elec_params/HBondWeightType.csv 23478d23437 < c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/sp2_elec_params/HBondWeightType.csv 23486a23446 > c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/sp2_params/HBondWeightType.csv 23489d23448 < c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/sp2_params/HBondWeightType.csv 23492a23452,23453 > 6ead1d93543251077cae07901e0b4e18 ./scoring/score_functions/InterchainPotential/interchain_env_log.txt > 46a7774006cddf280bff3df87ad41260 ./scoring/score_functions/InterchainPotential/interchain_pair_log.txt 23496a23458,23472 > f0e5915e4f30db715405e80bbb69ac75 ./scoring/score_functions/MembranePotential/AsymEZ_CB_Derivs.txt > 81d9606233578fa646da1ac57572981a ./scoring/score_functions/MembranePotential/AsymEZ_CB.txt > 0358edae07a5897a0f2ca1c8826907c1 ./scoring/score_functions/MembranePotential/AsymEZ_CG_Derivs.txt > d215240467bb106d9487926cbfc0d200 ./scoring/score_functions/MembranePotential/AsymEZ_CG.txt > 4765e6290c39ce35463db5961e133d18 ./scoring/score_functions/MembranePotential/CEN10_mem_env_log.txt > 26fcb8cba9f293491c34990bea5b33e3 ./scoring/score_functions/MembranePotential/CEN10_Menv_smooth_log.txt > 0fc7c0849a9dea70e44a79347f938afc ./scoring/score_functions/MembranePotential/CEN6_mem_env_log.txt > f956e8ac1a4dbadaefe5d69891c7896e ./scoring/score_functions/MembranePotential/ELazaridis_cen_polynom_table.txt > fe3769ce8b450c89b620c05f9b04a106 ./scoring/score_functions/MembranePotential/ELazaridis_polynom_table.txt > dcdf1cb689fd5108c99a78ebfd66e4eb ./scoring/score_functions/MembranePotential/elazar_spline_mp_span_ins_fa.txt > 4a80bcb58402b65a00ce48944563aa92 ./scoring/score_functions/MembranePotential/memcbeta_den.txt > 953ff23b1b30bf4608f5b05b67ed3eab ./scoring/score_functions/MembranePotential/mem_env_log.txt > a5209b0b2d8a76f8898e7f2dac443499 ./scoring/score_functions/MembranePotential/mem_pair_log.txt > 3b6852a184ce67e5f9cc8ddf57171099 ./scoring/score_functions/MembranePotential/spline_test_cen.txt > fe84df98959bb356ff1bfa50c00fc88b ./scoring/score_functions/MembranePotential/spline_test_fa.txt 23502d23477 < c9563fcd6cfa95c288cabcdb1509bccb ./scoring/score_functions/mhc_epitope/propred8.txt 23503a23479 > c9563fcd6cfa95c288cabcdb1509bccb ./scoring/score_functions/mhc_epitope/propred8.txt 23506a23483 > eaa4499c741b2101b1aa0d911c3f374c ./scoring/score_functions/NV/neighbor_vector_score.histogram 23530a23508,23529 > 48acd1dc343d0cd660719368f4d7ad59 ./scoring/score_functions/P_AA_pp/Paa > 6d7e2505c3e46a15e0da459570176401 ./scoring/score_functions/P_AA_pp/P_AA > 826c68782f2b8a8b128a0a5f9478f085 ./scoring/score_functions/P_AA_pp/Paa_n > dbde0178006bd238ad889a09ab7d756f ./scoring/score_functions/P_AA_pp/P_AA_n > 4ba7da8cd9c178f99689828aafb1ee71 ./scoring/score_functions/P_AA_pp/P_AA_pp > 2c15072c1fb1a781e51bb9d2771a97b5 ./scoring/score_functions/P_AA_pp/P_AA_pp_08.2009 > 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/10deg/AcademicLicensePropensityMap.txt > 1c24030a571145ec8febc3303611dacd ./scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa131/a20.prop > 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa131/AcademicLicensePropensityMap.txt > 72c92fee7f8406bece7670f96bf43171 ./scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa50/a20.prop > 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa50/AcademicLicensePropensityMap.txt > b1e15266c861948f12ca9aa5979218ae ./scoring/score_functions/P_AA_pp/shapovalov/10deg/Taken.From.txt > 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/AcademicLicensePropensityMap.txt > 9aac30c61fbedc7a523acad0f34d5284 ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/kappa131/a20.prop > 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/kappa131/AcademicLicensePropensityMap.txt > aae8f09f541e7444aa2f1bbe76c7388b ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/kappa50/a20.prop > 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/kappa50/AcademicLicensePropensityMap.txt > f682494cd608556260b5f052aa87f9b9 ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/Taken.From.txt > 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/AcademicLicensePropensityMap.txt > 9fca8b2c5743394d96f5e5113a56fa17 ./scoring/score_functions/P_AA_pp/shapovalov/argumentsExample.shapovalov.txt > 9d2b10c3e4b248a2a892136c8bc15d6a ./scoring/score_functions/P_AA_SS_cen6/P_AA_SS_cen6.txt > becdd56df1ac23c90d0536326fcb2989 ./scoring/score_functions/P_AA_SS_cen6/P_AA_SS.txt 23531a23531 > 59cc218d3aa4a959d548d4be40d1c348 ./scoring/score_functions/PairEPotential/pdb_pair_stats_fine 23562,23566d23561 < 040b4ad6fb23ac66f31e4c9b05cdd77a ./scoring/score_functions/rama/Rama.10.2009.yfsong.dat < 7354ee96baa917d797a33202670be037 ./scoring/score_functions/rama/Rama08.dat < 19afec1461b063b74c8674276d3d823c ./scoring/score_functions/rama/Rama09_noEH_kernel25_it08.dat < 7b5b9727101cba1d1ed77bfde58014f9 ./scoring/score_functions/rama/Rama_XPG_3level.txt < f12a238a018c84412a3662f13c3755f1 ./scoring/score_functions/rama/Rama_smooth_dyn.dat_ss_6.4 23581d23575 < 97a7f54fc4dc56a36d7f07fb43ce00fb ./scoring/score_functions/rama/beta_aa/B2A.rama 23583c23577 < 3a6db74f153dbc2ef58f92bc1be3956d ./scoring/score_functions/rama/beta_aa/B3A.rama --- > 97a7f54fc4dc56a36d7f07fb43ce00fb ./scoring/score_functions/rama/beta_aa/B2A.rama 23586,23587c23580 < 2cbb5e3a46c135336354ea701965f917 ./scoring/score_functions/rama/beta_aa/B3G.rama < 2857c8e9482558100b9c1b1a0335bed5 ./scoring/score_functions/rama/beta_aa/B3G_.rama --- > 3a6db74f153dbc2ef58f92bc1be3956d ./scoring/score_functions/rama/beta_aa/B3A.rama 23589c23582,23583 < 553b0163587c3cb61e5a20361d2d4e3c ./scoring/score_functions/rama/beta_aa/B3P.rama --- > 2857c8e9482558100b9c1b1a0335bed5 ./scoring/score_functions/rama/beta_aa/B3G_.rama > 2cbb5e3a46c135336354ea701965f917 ./scoring/score_functions/rama/beta_aa/B3G.rama 23590a23585,23587 > 553b0163587c3cb61e5a20361d2d4e3c ./scoring/score_functions/rama/beta_aa/B3P.rama > 856bfd1ce72cee074eb9220336027ef7 ./scoring/score_functions/rama/beta_aa/cisACPC_prepro.rama > 1286972e0a203d5430157efa92a7baab ./scoring/score_functions/rama/beta_aa/cisACPC.rama 23594,23595d23590 < 1286972e0a203d5430157efa92a7baab ./scoring/score_functions/rama/beta_aa/cisACPC.rama < 856bfd1ce72cee074eb9220336027ef7 ./scoring/score_functions/rama/beta_aa/cisACPC_prepro.rama 23600a23596,23597 > 60879edc71f7e7718e2cc70e10521bc8 ./scoring/score_functions/rama/fd_beta_nov2016/all.ramaProb > ef6fdf2deccc5609aa6f4335d904b168 ./scoring/score_functions/rama/fd_beta_nov2016/prepro.ramaProb 23605,23606d23601 < 60879edc71f7e7718e2cc70e10521bc8 ./scoring/score_functions/rama/fd_beta_nov2016/all.ramaProb < ef6fdf2deccc5609aa6f4335d904b168 ./scoring/score_functions/rama/fd_beta_nov2016/prepro.ramaProb 23608a23604,23605 > d5f7a0f38042d626d17c7406adf7c2e1 ./scoring/score_functions/rama/flat/sym_all_rama.dat > c37c494b227703907ce69ce103920a5e ./scoring/score_functions/rama/flat/sym_all_rama_str.dat 23613,23614d23609 < d5f7a0f38042d626d17c7406adf7c2e1 ./scoring/score_functions/rama/flat/sym_all_rama.dat < c37c494b227703907ce69ce103920a5e ./scoring/score_functions/rama/flat/sym_all_rama_str.dat 23619d23613 < f03f96d3c324b846142786e790abd553 ./scoring/score_functions/rama/oligourea/OU3_ALA_rama.txt 23621c23615 < 49c6bbbb5029bbbbbe4922dc71e0252c ./scoring/score_functions/rama/oligourea/OU3_PRO_rama.txt --- > f03f96d3c324b846142786e790abd553 ./scoring/score_functions/rama/oligourea/OU3_ALA_rama.txt 23623c23617,23622 < 937b56837ba6290903bff528cb0dd2d3 ./scoring/score_functions/rama/shapovalov/.gitignore --- > 49c6bbbb5029bbbbbe4922dc71e0252c ./scoring/score_functions/rama/oligourea/OU3_PRO_rama.txt > 7354ee96baa917d797a33202670be037 ./scoring/score_functions/rama/Rama08.dat > 19afec1461b063b74c8674276d3d823c ./scoring/score_functions/rama/Rama09_noEH_kernel25_it08.dat > 040b4ad6fb23ac66f31e4c9b05cdd77a ./scoring/score_functions/rama/Rama.10.2009.yfsong.dat > f12a238a018c84412a3662f13c3755f1 ./scoring/score_functions/rama/Rama_smooth_dyn.dat_ss_6.4 > 7b5b9727101cba1d1ed77bfde58014f9 ./scoring/score_functions/rama/Rama_XPG_3level.txt 23625,23626d23623 < ba9956b7550301c6659ed900f1f5f5bf ./scoring/score_functions/rama/shapovalov/Suggested.Default.txt < 184d8ea97ee2a68c628e7f13f9fbf5d6 ./scoring/score_functions/rama/shapovalov/Taken.From.txt 23627a23625 > 937b56837ba6290903bff528cb0dd2d3 ./scoring/score_functions/rama/shapovalov/.gitignore 23629d23626 < ba9956b7550301c6659ed900f1f5f5bf ./scoring/score_functions/rama/shapovalov/kappa25/Suggested.Default.txt 23630a23628 > ba9956b7550301c6659ed900f1f5f5bf ./scoring/score_functions/rama/shapovalov/kappa25/Suggested.Default.txt 23636a23635,23636 > ba9956b7550301c6659ed900f1f5f5bf ./scoring/score_functions/rama/shapovalov/Suggested.Default.txt > 184d8ea97ee2a68c628e7f13f9fbf5d6 ./scoring/score_functions/rama/shapovalov/Taken.From.txt 23637a23638 > 14bd5a5c7d3829af1f630a120ee6b15a ./scoring/score_functions/saxs/always_one.ff 23642a23644,23646 > 4e61f89d94286e19b16121492bbbf131 ./scoring/score_functions/saxs/ff-rosetta-cen.cfg > 4e61f89d94286e19b16121492bbbf131 ./scoring/score_functions/saxs/ff-rosetta.cfg > ba5c664e76deeabb320e1ff99e741e68 ./scoring/score_functions/saxs/ff-rosetta-fa.cfg 23660,23663d23663 < 14bd5a5c7d3829af1f630a120ee6b15a ./scoring/score_functions/saxs/always_one.ff < 4e61f89d94286e19b16121492bbbf131 ./scoring/score_functions/saxs/ff-rosetta-cen.cfg < ba5c664e76deeabb320e1ff99e741e68 ./scoring/score_functions/saxs/ff-rosetta-fa.cfg < 4e61f89d94286e19b16121492bbbf131 ./scoring/score_functions/saxs/ff-rosetta.cfg 23664a23665,23667 > b38dd32df507671463d41f82a1cf7062 ./scoring/score_functions/SecondaryStructurePotential/phi.theta.36.HS.resmooth > e09326496a7d664bb8174736f5f2ce5f ./scoring/score_functions/SecondaryStructurePotential/phi.theta.36.SS.resmooth > 6212a94d503152d8d52db10ebd31f9cf ./scoring/score_functions/SecondaryStructurePotential/rsigma_dot.txt 23703a23707,23709 > c6dccb2e49c05862d1e9ddbfce25abe3 ./scoring/score_functions/SurfacePotential/average_hASA_by_res_and_neighbor.txt > b1a432b3b104d221498d5e3333123511 ./scoring/score_functions/SurfacePotential/hpatch_score.txt > 1e73fba906f4aa4a62680420c02adb6c ./scoring/score_functions/SurfacePotential/surface_score.txt 23709,23713d23714 < b68446231d67c4d6655cd09b50981a5a ./scoring/weights/HBNet.wts < 651020bfb2c643be760b16546e9bedb4 ./scoring/weights/PPI_discrimination.wts < c1608568fb0fe9232625900e865cd051 ./scoring/weights/ProQ2.wts < 72a18a4f6a752b9f6d1f13891c5ee910 ./scoring/weights/ProQM.wts < 8ea55c33410fc3a33510e0edc3741111 ./scoring/weights/RS_centroid.wts 23717d23717 < 54dcab894f25d619ecf675f6b75ce7ea ./scoring/weights/antibody_design.wts_patch 23719c23719 < 9acdaa4fa59e699a5875c9c88515e995 ./scoring/weights/beta.wts --- > 54dcab894f25d619ecf675f6b75ce7ea ./scoring/weights/antibody_design.wts_patch 23722d23721 < 9acdaa4fa59e699a5875c9c88515e995 ./scoring/weights/beta_genpot.wts 23726c23725 < 864a853ab1b6e3667d1f208dbae146fd ./scoring/weights/beta_july15.wts --- > 9acdaa4fa59e699a5875c9c88515e995 ./scoring/weights/beta_genpot.wts 23729c23728 < 61aabafd6676a0baa76d80e4bb3a05b2 ./scoring/weights/beta_nov15.wts --- > 864a853ab1b6e3667d1f208dbae146fd ./scoring/weights/beta_july15.wts 23733c23732 < 60cf702c8022453dcc47b9b5e0a046b8 ./scoring/weights/beta_nov16.wts --- > 61aabafd6676a0baa76d80e4bb3a05b2 ./scoring/weights/beta_nov15.wts 23737c23736 < 2d3819b821803f362cecadfa064890cc ./scoring/weights/beta_peptide.wts --- > 60cf702c8022453dcc47b9b5e0a046b8 ./scoring/weights/beta_nov16.wts 23741c23740 < d453b63479afffacb16d0119f9a10aec ./scoring/weights/beta_soft.wts --- > 2d3819b821803f362cecadfa064890cc ./scoring/weights/beta_peptide.wts 23742a23742,23743 > d453b63479afffacb16d0119f9a10aec ./scoring/weights/beta_soft.wts > 9acdaa4fa59e699a5875c9c88515e995 ./scoring/weights/beta.wts 23745d23745 < fa45d5cc339982ad96512af4d1f88e51 ./scoring/weights/cen_std.wts 23746a23747 > fa45d5cc339982ad96512af4d1f88e51 ./scoring/weights/cen_std.wts 23749d23749 < 42fd758007e99bfefe9abff7909f9d3e ./scoring/weights/ddg.wts 23750a23751 > 42fd758007e99bfefe9abff7909f9d3e ./scoring/weights/ddg.wts 23753d23753 < 67e3d74b037acc59c0020efb6fd6f7f4 ./scoring/weights/dna.wts 23756,23757c23756 < c0efb7f47a1e940493ad14157d10abc6 ./scoring/weights/docking.wts < fdc3f9912848011d3469265520eb2bc3 ./scoring/weights/docking.wts_patch --- > 67e3d74b037acc59c0020efb6fd6f7f4 ./scoring/weights/dna.wts 23760a23760,23761 > c0efb7f47a1e940493ad14157d10abc6 ./scoring/weights/docking.wts > fdc3f9912848011d3469265520eb2bc3 ./scoring/weights/docking.wts_patch 23762d23762 < 29923606b58036b69b1774d875ed5a33 ./scoring/weights/enzdes.wts 23763a23764 > 29923606b58036b69b1774d875ed5a33 ./scoring/weights/enzdes.wts 23769d23769 < 4001cc20f78ece921c3dd2fcbeb9843b ./scoring/weights/gauss.wts 23770a23771 > 4001cc20f78ece921c3dd2fcbeb9843b ./scoring/weights/gauss.wts 23772d23772 < e0b9ae8b268d53a6430d498aaf5f27a1 ./scoring/weights/genpot_full.wts 23773a23774,23775 > e0b9ae8b268d53a6430d498aaf5f27a1 ./scoring/weights/genpot_full.wts > b68446231d67c4d6655cd09b50981a5a ./scoring/weights/HBNet.wts 23782d23783 < 0f350e8fe59bc158b7769827592747d7 ./scoring/weights/ligand.wts 23784,23785d23784 < 212570db88180b6ab4d5347b13f4267e ./scoring/weights/ligand_soft_rep.wts < 74c4ed8b3b3eaa7d6127b6ae67a86e68 ./scoring/weights/ligand_soft_rep_gen_born.wts 23786a23786,23788 > 74c4ed8b3b3eaa7d6127b6ae67a86e68 ./scoring/weights/ligand_soft_rep_gen_born.wts > 212570db88180b6ab4d5347b13f4267e ./scoring/weights/ligand_soft_rep.wts > 0f350e8fe59bc158b7769827592747d7 ./scoring/weights/ligand.wts 23789,23790d23790 < 8fcf4a3f6f52944664fef0ddd7a88405 ./scoring/weights/make_rot_lib.wts < c7dadd09508f7e1fc5f47af6e16358fa ./scoring/weights/make_rot_lib_orig.wts 23792c23792,23793 < 99f6c28853309eaff0820664d376d65a ./scoring/weights/membrane_highres.wts --- > c7dadd09508f7e1fc5f47af6e16358fa ./scoring/weights/make_rot_lib_orig.wts > 8fcf4a3f6f52944664fef0ddd7a88405 ./scoring/weights/make_rot_lib.wts 23793a23795 > 99f6c28853309eaff0820664d376d65a ./scoring/weights/membrane_highres.wts 23796,23797d23797 < 3ca4a4a59f23bb66107b6e883f62313b ./scoring/weights/mm_std.wts < 0e7cfba2d6e569bbae3a9d8a0a187eda ./scoring/weights/mm_std_cart.wts 23799c23799 < e5574fc8d7ac8c435a168278fa7ac14d ./scoring/weights/mm_std_fa_elec_dslf_fa13.wts --- > 0e7cfba2d6e569bbae3a9d8a0a187eda ./scoring/weights/mm_std_cart.wts 23801d23800 < 4075193a1e065c2425a7917d1eafca16 ./scoring/weights/mm_std_fa_elec_dslf_fa13_split_unfolded.wts 23802a23802,23803 > 4075193a1e065c2425a7917d1eafca16 ./scoring/weights/mm_std_fa_elec_dslf_fa13_split_unfolded.wts > e5574fc8d7ac8c435a168278fa7ac14d ./scoring/weights/mm_std_fa_elec_dslf_fa13.wts 23803a23805 > 3ca4a4a59f23bb66107b6e883f62313b ./scoring/weights/mm_std.wts 23814d23815 < 9d9aeb1728223cc1549d21ff310dde48 ./scoring/weights/mpframework_smooth_fa_2012.wts 23815a23817 > 9d9aeb1728223cc1549d21ff310dde48 ./scoring/weights/mpframework_smooth_fa_2012.wts 23824d23825 < 2d1408607a622c799ce0f362dff3f59d ./scoring/weights/occ_Hbond_sol_fitted.wts_patch 23827d23827 < 2fc5d5ac3facc14e704d8a5cff3bda79 ./scoring/weights/occ_Hbond_sol_fitted_tal.wts_patch 23829a23830,23831 > 2fc5d5ac3facc14e704d8a5cff3bda79 ./scoring/weights/occ_Hbond_sol_fitted_tal.wts_patch > 2d1408607a622c799ce0f362dff3f59d ./scoring/weights/occ_Hbond_sol_fitted.wts_patch 23831d23832 < 9b607811ac9bb9c1848677c6cb1fd153 ./scoring/weights/orbitals.wts 23833d23833 < 46d2f725cdb2bae301bc3e0044aa4de8 ./scoring/weights/orbitals_talaris2013.wts 23834a23835,23836 > 46d2f725cdb2bae301bc3e0044aa4de8 ./scoring/weights/orbitals_talaris2013.wts > 9b607811ac9bb9c1848677c6cb1fd153 ./scoring/weights/orbitals.wts 23837a23840 > 651020bfb2c643be760b16546e9bedb4 ./scoring/weights/PPI_discrimination.wts 23839,23840c23842,23843 < 61aabafd6676a0baa76d80e4bb3a05b2 ./scoring/weights/ref2015.wts < 2a4460342c0aed62cae45cda43486f19 ./scoring/weights/ref2015_cart.wts --- > c1608568fb0fe9232625900e865cd051 ./scoring/weights/ProQ2.wts > 72a18a4f6a752b9f6d1f13891c5ee910 ./scoring/weights/ProQM.wts 23841a23845 > 2a4460342c0aed62cae45cda43486f19 ./scoring/weights/ref2015_cart.wts 23844a23849 > 61aabafd6676a0baa76d80e4bb3a05b2 ./scoring/weights/ref2015.wts 23848d23852 < 0415ea6b9e0180b7ff6183726a027aa5 ./scoring/weights/rna/denovo/rna_hires.wts 23851c23855 < 8beb898247bec04644176bffc86ffd03 ./scoring/weights/rna/denovo/rna_lores.wts --- > 0415ea6b9e0180b7ff6183726a027aa5 ./scoring/weights/rna/denovo/rna_hires.wts 23853d23856 < 1423cd5e5a96d4e378ab8ef5e3ec988b ./scoring/weights/rna/denovo/rna_lores_with_rnp.wts 23855a23859,23860 > 1423cd5e5a96d4e378ab8ef5e3ec988b ./scoring/weights/rna/denovo/rna_lores_with_rnp.wts > 8beb898247bec04644176bffc86ffd03 ./scoring/weights/rna/denovo/rna_lores.wts 23857d23861 < af4fe51f97266f6ba978e86ab125dd3d ./scoring/weights/rnp_ddg.wts 23858a23863 > af4fe51f97266f6ba978e86ab125dd3d ./scoring/weights/rnp_ddg.wts 23859a23865 > 8ea55c33410fc3a33510e0edc3741111 ./scoring/weights/RS_centroid.wts 23861,23862d23866 < 28a32d54c62531f4b9c68f3a439ce42e ./scoring/weights/score0.wts < ac4bb008c9f9f4f905c7710725c51c19 ./scoring/weights/score0.wts_patch 23864d23867 < 46125280d5c35ee916b4d430281fdfbe ./scoring/weights/score0_memb.wts 23866,23868c23869,23871 < 691e872145c72c059bdaa5a5007b67bd ./scoring/weights/score1.wts < ac624d6a9d54add2ee522497054dd578 ./scoring/weights/score12.wts < 54888cef0a8b2b7d2e2616a8c02cc187 ./scoring/weights/score12.wts_patch --- > 46125280d5c35ee916b4d430281fdfbe ./scoring/weights/score0_memb.wts > 28a32d54c62531f4b9c68f3a439ce42e ./scoring/weights/score0.wts > ac4bb008c9f9f4f905c7710725c51c19 ./scoring/weights/score0.wts_patch 23871a23875 > eccbce993a0f115450c00cf5749b9d9e ./scoring/weights/score12minpack.wts 23872a23877 > 4a33f7143fd65c350a3d9c54e4059db3 ./scoring/weights/score12prime.wts 23877,23879c23882,23883 < eccbce993a0f115450c00cf5749b9d9e ./scoring/weights/score12minpack.wts < 4a33f7143fd65c350a3d9c54e4059db3 ./scoring/weights/score12prime.wts < 45b992d26e37a919835f2318476b629e ./scoring/weights/score13.wts --- > ac624d6a9d54add2ee522497054dd578 ./scoring/weights/score12.wts > 54888cef0a8b2b7d2e2616a8c02cc187 ./scoring/weights/score12.wts_patch 23880a23885 > 45b992d26e37a919835f2318476b629e ./scoring/weights/score13.wts 23885c23890 < 371bc2a51d405236064d3c16b3d93a2f ./scoring/weights/score2.wts --- > 691e872145c72c059bdaa5a5007b67bd ./scoring/weights/score1.wts 23890c23895 < b2565b1a419a03840bd02f1abf40497b ./scoring/weights/score3.wts --- > 371bc2a51d405236064d3c16b3d93a2f ./scoring/weights/score2.wts 23897c23902 < db41f45aa78e7059374b4542cf7d62a1 ./scoring/weights/score4L.wts_patch --- > b2565b1a419a03840bd02f1abf40497b ./scoring/weights/score3.wts 23900d23904 < 90bdc21cb34f8efab7f81e8a43d0f634 ./scoring/weights/score4_cenrot_relax.wts 23901a23906 > 90bdc21cb34f8efab7f81e8a43d0f634 ./scoring/weights/score4_cenrot_relax.wts 23903c23908 < 2981841f37b3baca4f03120856902781 ./scoring/weights/score4_smooth.wts --- > db41f45aa78e7059374b4542cf7d62a1 ./scoring/weights/score4L.wts_patch 23906c23911 < b134e4dd151e0d69b0f06c3eeea79489 ./scoring/weights/score5.wts --- > 2981841f37b3baca4f03120856902781 ./scoring/weights/score4_smooth.wts 23911,23912c23916,23918 < d53adb4836d0e252ed9c52a13d4bea6a ./scoring/weights/score_membrane.wts < a4ca71ab67be0c8977d9d3d716909ebb ./scoring/weights/score_membrane_cen.wts --- > b134e4dd151e0d69b0f06c3eeea79489 ./scoring/weights/score5.wts > 31c56864f239a441c0cc027196e4b460 ./scoring/weights/scorefacts_cart.wts > 4a066beec86c3594580041b352c6e892 ./scoring/weights/scorefacts.wts 23913a23920 > a4ca71ab67be0c8977d9d3d716909ebb ./scoring/weights/score_membrane_cen.wts 23915,23916c23922 < 4a066beec86c3594580041b352c6e892 ./scoring/weights/scorefacts.wts < 31c56864f239a441c0cc027196e4b460 ./scoring/weights/scorefacts_cart.wts --- > d53adb4836d0e252ed9c52a13d4bea6a ./scoring/weights/score_membrane.wts 23919d23924 < 7002c564312deaad8393a0310bf947d7 ./scoring/weights/soft_rep.wts 23922,23923c23927 < cf5173f7aad0b7712b25bd400fe21351 ./scoring/weights/sp2_correction.wts < cffd9eac51b69a1c544d8752d696a1bb ./scoring/weights/sp2_correction_dun02.wts --- > 7002c564312deaad8393a0310bf947d7 ./scoring/weights/soft_rep.wts 23924a23929,23930 > cffd9eac51b69a1c544d8752d696a1bb ./scoring/weights/sp2_correction_dun02.wts > cf5173f7aad0b7712b25bd400fe21351 ./scoring/weights/sp2_correction.wts 23928d23933 < 8ead29c3bef1142ea9fdbd68f36f38a0 ./scoring/weights/stepwise/rna/LOG.txt 23931a23937 > 8ead29c3bef1142ea9fdbd68f36f38a0 ./scoring/weights/stepwise/rna/LOG.txt 23934d23939 < 5158925d2848349a6cf7dd7f01fe3d1c ./scoring/weights/stepwise/rna/rna_hires_elec_dens.wts 23937c23942 < 1c008b7cc0007358375077fa4178cd5b ./scoring/weights/stepwise/rna/rna_hires_fang.wts --- > 5158925d2848349a6cf7dd7f01fe3d1c ./scoring/weights/stepwise/rna/rna_hires_elec_dens.wts 23938a23944 > 1c008b7cc0007358375077fa4178cd5b ./scoring/weights/stepwise/rna/rna_hires_fang.wts 23941d23946 < 3f5e54b20df3cc86e2440ee745a6d06c ./scoring/weights/stepwise/rna/rna_res_level_energy.wts 23945d23949 < 76159d24400ee5918dea83bd586ad3bf ./scoring/weights/stepwise/rna/rna_res_level_energy_with_intra.wts 23947c23951,23952 < 38ca492bb617e330a22e389633ce39a9 ./scoring/weights/stepwise/rna/turner.wts --- > 76159d24400ee5918dea83bd586ad3bf ./scoring/weights/stepwise/rna/rna_res_level_energy_with_intra.wts > 3f5e54b20df3cc86e2440ee745a6d06c ./scoring/weights/stepwise/rna/rna_res_level_energy.wts 23948a23954 > 38ca492bb617e330a22e389633ce39a9 ./scoring/weights/stepwise/rna/turner.wts 23950d23955 < 0d0a8d241d33777bf15aa5691c4bc916 ./scoring/weights/talaris2013.wts 23958c23963 < 5a79df0f751147ef6e41936f971a76b3 ./scoring/weights/talaris2014.wts --- > 0d0a8d241d33777bf15aa5691c4bc916 ./scoring/weights/talaris2013.wts 23960a23966 > 5a79df0f751147ef6e41936f971a76b3 ./scoring/weights/talaris2014.wts 23969d23974 < bb2e357b75be255a10c533b66a92ba1f ./sequence/mhc_pssms/HLA-DPA101-DPB10401_nooverlap.9mer.norm.pssm 23970a23976 > bb2e357b75be255a10c533b66a92ba1f ./sequence/mhc_pssms/HLA-DPA101-DPB10401_nooverlap.9mer.norm.pssm 23997d24002 < 8e946fc029ada19f3d6e0ba885c08da9 ./sequence/mhc_rank_svm_scores/HLA-DPA101-DPB10401.libsvm.test.out.sort.gz 23998a24004 > 8e946fc029ada19f3d6e0ba885c08da9 ./sequence/mhc_rank_svm_scores/HLA-DPA101-DPB10401.libsvm.test.out.sort.gz 24025d24030 < 13645dc70cfd088bd9c5622f9b08d2cc ./sequence/mhc_svms/HLA-DPA101-DPB10401_nooverlap.libsvm.dat.noscale.nu0.5.min_mse.model 24026a24032 > 13645dc70cfd088bd9c5622f9b08d2cc ./sequence/mhc_svms/HLA-DPA101-DPB10401_nooverlap.libsvm.dat.noscale.nu0.5.min_mse.model 24051d24056 < cac591fa6c4ed634c991ecce240bbea7 ./sequence/resinfo.db 24052a24058 > cac591fa6c4ed634c991ecce240bbea7 ./sequence/resinfo.db 24054d24059 < 1c58289a1253ef0ef2e7f56e9e7374bf ./sequence/substitution_matrix/BLOSUM62.prob.rescale 24055a24061 > 1c58289a1253ef0ef2e7f56e9e7374bf ./sequence/substitution_matrix/BLOSUM62.prob.rescale 24183,24186d24188 < 318b9793c21e14af7bd0677b9efab46b ./virtual_enzymes/N-terminal_acetyltransferases/h_sapiens/generic < 17ed5ffba14493433ce81f26b08551c7 ./virtual_enzymes/N-terminal_acetyltransferases/s_solfataricus/Ard1 < 821ce0b905c3cec7c7fcdc9f914eae2d ./virtual_enzymes/README < 41d550b2dc3f2a33da29012e14ef44c0 ./virtual_enzymes/glycosyltransferases/c_jejuni/PglB 24188c24190 < 542b786e0dae1272fdf0f62cf792657c ./virtual_enzymes/glycosyltransferases/h_sapiens/OGT --- > 41d550b2dc3f2a33da29012e14ef44c0 ./virtual_enzymes/glycosyltransferases/c_jejuni/PglB 24190c24192 < 1431861dd530531f02b4dbfa433562b2 ./virtual_enzymes/kinases/h_sapiens/AMPK --- > 542b786e0dae1272fdf0f62cf792657c ./virtual_enzymes/glycosyltransferases/h_sapiens/OGT 24191a24194,24197 > 1431861dd530531f02b4dbfa433562b2 ./virtual_enzymes/kinases/h_sapiens/AMPK > d4c9fb8426f2c5dcd3e7059c1fa1b8ce ./virtual_enzymes/kinases/h_sapiens/CaMK1 > 65d785605ce7195de86c25ae271f1e21 ./virtual_enzymes/kinases/h_sapiens/CaMK2 > 6b04ac7e3d1ccd8b3fe58e1b618b479e ./virtual_enzymes/kinases/h_sapiens/CaMK4 24201,24203d24206 < d4c9fb8426f2c5dcd3e7059c1fa1b8ce ./virtual_enzymes/kinases/h_sapiens/CaMK1 < 65d785605ce7195de86c25ae271f1e21 ./virtual_enzymes/kinases/h_sapiens/CaMK2 < 6b04ac7e3d1ccd8b3fe58e1b618b479e ./virtual_enzymes/kinases/h_sapiens/CaMK4 24206a24210 > d6ba2fd1beb890083904fe49305bcab9 ./virtual_enzymes/kinases/h_sapiens/generic 24213a24218,24219 > bffd304627f865c1d6b21edcd8b9d14e ./virtual_enzymes/kinases/h_sapiens/PhK > 6d9a9ad15fc0a9676ef1c2d51d623472 ./virtual_enzymes/kinases/h_sapiens/Pim1 24224,24225d24229 < bffd304627f865c1d6b21edcd8b9d14e ./virtual_enzymes/kinases/h_sapiens/PhK < 6d9a9ad15fc0a9676ef1c2d51d623472 ./virtual_enzymes/kinases/h_sapiens/Pim1 24230c24234,24236 < d6ba2fd1beb890083904fe49305bcab9 ./virtual_enzymes/kinases/h_sapiens/generic --- > 318b9793c21e14af7bd0677b9efab46b ./virtual_enzymes/N-terminal_acetyltransferases/h_sapiens/generic > 17ed5ffba14493433ce81f26b08551c7 ./virtual_enzymes/N-terminal_acetyltransferases/s_solfataricus/Ard1 > 821ce0b905c3cec7c7fcdc9f914eae2d ./virtual_enzymes/README

linux.gcc.mpi.serialization.integration.mpi.features_pdb_mpi 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/features_pdb_mpi: features_IntegrationTest.db3.dump Only in /home/benchmark/working_dir/main:62132/features_pdb_mpi: log_db_output Only in /home/benchmark/working_dir/main:62131/features_pdb_mpi: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.helical_bundle_predict 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict: output.silent Only in /home/benchmark/working_dir/main:62131/helical_bundle_predict: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.helical_bundle_predict_psipred 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict_psipred: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict_psipred: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict_psipred: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict_psipred: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict_psipred: output.silent Only in /home/benchmark/working_dir/main:62131/helical_bundle_predict_psipred: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.helical_bundle_predict_psipred_with_helix_globals 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict_psipred_with_helix_globals: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict_psipred_with_helix_globals: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict_psipred_with_helix_globals: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict_psipred_with_helix_globals: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict_psipred_with_helix_globals: output.silent Only in /home/benchmark/working_dir/main:62131/helical_bundle_predict_psipred_with_helix_globals: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.helical_bundle_predict_sequence 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict_sequence: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict_sequence: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict_sequence: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict_sequence: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict_sequence: output.silent Only in /home/benchmark/working_dir/main:62131/helical_bundle_predict_sequence: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.helical_bundle_predict_skipping_residues 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict_skipping_residues: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict_skipping_residues: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict_skipping_residues: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict_skipping_residues: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/helical_bundle_predict_skipping_residues: output.silent Only in /home/benchmark/working_dir/main:62131/helical_bundle_predict_skipping_residues: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.mpi_simple_cycpep_predict 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict/log and /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict/log differ Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict: out.silent Only in /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict: .test_did_not_run.log Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict/log /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict/log 1,8d0 < -------------------------------------------------------------------------- < The value of the MCA parameter "plm_rsh_agent" was set to a path < that could not be found: < < plm_rsh_agent: ssh : rsh < < Please either unset the parameter, or check that the path is correct < -------------------------------------------------------------------------- Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict: out.silent Only in /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.mpi_simple_cycpep_predict_4level 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict_4level/log and /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level/log differ Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level: out.silent Only in /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict_4level: .test_did_not_run.log Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict_4level/log /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level/log 1,8d0 < -------------------------------------------------------------------------- < The value of the MCA parameter "plm_rsh_agent" was set to a path < that could not be found: < < plm_rsh_agent: ssh : rsh < < Please either unset the parameter, or check that the path is correct < -------------------------------------------------------------------------- Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level: out.silent Only in /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict_4level: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.mpi_simple_cycpep_predict_computing_pnear_to_all 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict_computing_pnear_to_all/log and /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_computing_pnear_to_all/log differ Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_computing_pnear_to_all: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_computing_pnear_to_all: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_computing_pnear_to_all: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_computing_pnear_to_all: out.silent Only in /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict_computing_pnear_to_all: .test_did_not_run.log Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict_computing_pnear_to_all/log /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_computing_pnear_to_all/log 1,8d0 < -------------------------------------------------------------------------- < The value of the MCA parameter "plm_rsh_agent" was set to a path < that could not be found: < < plm_rsh_agent: ssh : rsh < < Please either unset the parameter, or check that the path is correct < -------------------------------------------------------------------------- Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_computing_pnear_to_all: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_computing_pnear_to_all: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_computing_pnear_to_all: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_computing_pnear_to_all: out.silent Only in /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict_computing_pnear_to_all: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.recon_design_mpi 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/recon_design_mpi: 1avzmpi_0001.pdb Only in /home/benchmark/working_dir/main:62132/recon_design_mpi: 1m27mpi_0001.pdb Files /home/benchmark/working_dir/main:62131/recon_design_mpi/log_main and /home/benchmark/working_dir/main:62132/recon_design_mpi/log_main differ Only in /home/benchmark/working_dir/main:62132/recon_design_mpi: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/recon_design_mpi: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/recon_design_mpi: scorempi.sc Only in /home/benchmark/working_dir/main:62131/recon_design_mpi: .test_did_not_run.log Full Diff: Only in /home/benchmark/working_dir/main:62132/recon_design_mpi: 1avzmpi_0001.pdb Only in /home/benchmark/working_dir/main:62132/recon_design_mpi: 1m27mpi_0001.pdb diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62131/recon_design_mpi/log_main /home/benchmark/working_dir/main:62132/recon_design_mpi/log_main 1,8c1,6 < -------------------------------------------------------------------------- < The value of the MCA parameter "plm_rsh_agent" was set to a path < that could not be found: < < plm_rsh_agent: ssh : rsh < < Please either unset the parameter, or check that the path is correct < -------------------------------------------------------------------------- --- > ******** (C) Copyright Rosetta Commons Member Institutions. *************** > * Use of Rosetta for commercial purposes may require purchase of a license. * > ******** See LICENSE.md or email license@uw.edu for more details. ********** > ******** (C) Copyright Rosetta Commons Member Institutions. *************** > * Use of Rosetta for commercial purposes may require purchase of a license. * > ******** See LICENSE.md or email license@uw.edu for more details. ********** Only in /home/benchmark/working_dir/main:62132/recon_design_mpi: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/recon_design_mpi: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/recon_design_mpi: scorempi.sc Only in /home/benchmark/working_dir/main:62131/recon_design_mpi: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.replica_docking 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62131/replica_docking/log and /home/benchmark/working_dir/main:62132/replica_docking/log differ Only in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_0 Only in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_1 Only in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_2 Only in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_3 Only in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_4 Only in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_5 Only in /home/benchmark/working_dir/main:62131/replica_docking: .test_did_not_run.log Only in /home/benchmark/working_dir/main:62132/replica_docking: .test_got_timeout_kill.log Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62131/replica_docking/log /home/benchmark/working_dir/main:62132/replica_docking/log 0a1,12 > ******** (C) Copyright Rosetta Commons Member Institutions. *************** > * Use of Rosetta for commercial purposes may require purchase of a license. * > ******** See LICENSE.md or email license@uw.edu for more details. ********** > ******** (C) Copyright Rosetta Commons Member Institutions. *************** > * Use of Rosetta for commercial purposes may require purchase of a license. * > ******** See LICENSE.md or email license@uw.edu for more details. ********** > ******** (C) Copyright Rosetta Commons Member Institutions. *************** > * Use of Rosetta for commercial purposes may require purchase of a license. * > ******** See LICENSE.md or email license@uw.edu for more details. ********** > ******** (C) Copyright Rosetta Commons Member Institutions. *************** > * Use of Rosetta for commercial purposes may require purchase of a license. * > ******** See LICENSE.md or email license@uw.edu for more details. ********** 2,7c14 < The value of the MCA parameter "plm_rsh_agent" was set to a path < that could not be found: < < plm_rsh_agent: ssh : rsh < < Please either unset the parameter, or check that the path is correct --- > mpirun noticed that process rank 3 with PID 954008 on node hojo-4 exited on signal 9 (Killed). Only in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_0 Only in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_1 Only in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_2 Only in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_3 Only in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_4 Only in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_5 Only in /home/benchmark/working_dir/main:62131/replica_docking: .test_did_not_run.log Only in /home/benchmark/working_dir/main:62132/replica_docking: .test_got_timeout_kill.log Compare(...): Marking as "Script failed" due to presense of .test_did_not_run.log or .test_got_timeout_kill.log file!

linux.gcc.mpi.serialization.integration.mpi.simple_cycpep_predict_beta_thioether_lariat 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_beta_thioether_lariat: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_beta_thioether_lariat: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_beta_thioether_lariat: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_beta_thioether_lariat: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_beta_thioether_lariat: out_mpi.silent Only in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_beta_thioether_lariat: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.simple_cycpep_predict_bondangle_bondlength 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_bondangle_bondlength: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_bondangle_bondlength: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_bondangle_bondlength: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_bondangle_bondlength: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_bondangle_bondlength: out_mpi.silent Only in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_bondangle_bondlength: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.simple_cycpep_predict_cterm_isopeptide_lariat 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_cterm_isopeptide_lariat: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_cterm_isopeptide_lariat: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_cterm_isopeptide_lariat: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_cterm_isopeptide_lariat: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_cterm_isopeptide_lariat: out_mpi.silent Only in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_cterm_isopeptide_lariat: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.simple_cycpep_predict_cterm_isopeptide_lariat_tailless 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_cterm_isopeptide_lariat_tailless: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_cterm_isopeptide_lariat_tailless: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_cterm_isopeptide_lariat_tailless: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_cterm_isopeptide_lariat_tailless: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_cterm_isopeptide_lariat_tailless: out_mpi.silent Only in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_cterm_isopeptide_lariat_tailless: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.simple_cycpep_predict_design 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_design: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_design: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_design: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_design: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_design: num_structs.txt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_design: out_mpi.silent Only in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_design: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.simple_cycpep_predict_lanthionine 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_lanthionine: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_lanthionine: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_lanthionine: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_lanthionine: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_lanthionine: out_mpi.silent Only in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_lanthionine: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.simple_cycpep_predict_nterm_isopeptide_lariat 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_nterm_isopeptide_lariat: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_nterm_isopeptide_lariat: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_nterm_isopeptide_lariat: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_nterm_isopeptide_lariat: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_nterm_isopeptide_lariat: out_mpi.silent Only in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_nterm_isopeptide_lariat: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.simple_cycpep_predict_nterm_isopeptide_lariat_tailless 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_nterm_isopeptide_lariat_tailless: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_nterm_isopeptide_lariat_tailless: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_nterm_isopeptide_lariat_tailless: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_nterm_isopeptide_lariat_tailless: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_nterm_isopeptide_lariat_tailless: out_mpi.silent Only in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_nterm_isopeptide_lariat_tailless: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.simple_cycpep_predict_sidechain_isopeptide 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_sidechain_isopeptide: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_sidechain_isopeptide: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_sidechain_isopeptide: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_sidechain_isopeptide: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_sidechain_isopeptide: out_mpi.silent Only in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_sidechain_isopeptide: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.simple_cycpep_predict_sidechain_isopeptide_reverse 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_sidechain_isopeptide_reverse: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_sidechain_isopeptide_reverse: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_sidechain_isopeptide_reverse: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_sidechain_isopeptide_reverse: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_sidechain_isopeptide_reverse: out_mpi.silent Only in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_sidechain_isopeptide_reverse: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.simple_cycpep_predict_terminal_disulfide 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide: out_mpi.silent Only in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_terminal_disulfide: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.simple_cycpep_predict_terminal_disulfide_tails 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide_tails: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide_tails: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide_tails: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide_tails: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide_tails: out_mpi.silent Only in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_terminal_disulfide_tails: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.simple_cycpep_predict_terminal_disulfide_tails_2 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide_tails_2: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide_tails_2: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide_tails_2: out.silent Only in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_terminal_disulfide_tails_2: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.simple_cycpep_predict_thioether_lariat 「click to collapse/expand」

Brief Diff: Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_thioether_lariat: mpi_log_0.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_thioether_lariat: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_thioether_lariat: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_thioether_lariat: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_thioether_lariat: out_mpi.silent Only in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_thioether_lariat: .test_did_not_run.log

linux.gcc.mpi.serialization.integration.mpi.threefold_symm_peptide_design 「click to collapse/expand」

Brief Diff: Files /home/benchmark/working_dir/main:62131/threefold_symm_peptide_design/log and /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design/log differ Only in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: S_0001.pdb Only in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: S_0003.pdb Only in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: score_sorted.sc Only in /home/benchmark/working_dir/main:62131/threefold_symm_peptide_design: .test_did_not_run.log Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62131/threefold_symm_peptide_design/log /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design/log 1,8d0 < -------------------------------------------------------------------------- < The value of the MCA parameter "plm_rsh_agent" was set to a path < that could not be found: < < plm_rsh_agent: ssh : rsh < < Please either unset the parameter, or check that the path is correct < -------------------------------------------------------------------------- Only in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: mpi_log_1.filt Only in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: mpi_log_2.filt Only in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: mpi_log_3.filt Only in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: S_0001.pdb Only in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: S_0003.pdb Only in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: score_sorted.sc Only in /home/benchmark/working_dir/main:62131/threefold_symm_peptide_design: .test_did_not_run.log

All sub-tests

JSON output

{ "compared_with_test": { "full_name": "linux.gcc.mpi.serialization.integration.mpi", "name": "integration.mpi", "platform": { "compiler": "gcc", "extras": [ "mpi", "serialization" ], "os": "linux" }, "platform_as_string": "linux.gcc.mpi.serialization", "revision": { "branch": "main", "revision_id": 62131 }, "state": "failed", "test_id": 841877 }, "summary": { "failed": 28, "failed_tests": [ "simple_cycpep_predict_cterm_isopeptide_lariat", "mpi_simple_cycpep_predict_computing_pnear_to_all", "simple_cycpep_predict_thioether_lariat", "helical_bundle_predict", "simple_cycpep_predict_beta_thioether_lariat", "database_md5", "simple_cycpep_predict_nterm_isopeptide_lariat", "helical_bundle_predict_psipred", "helical_bundle_predict_skipping_residues", "simple_cycpep_predict_cterm_isopeptide_lariat_tailless", "simple_cycpep_predict_terminal_disulfide", "backbonegridsampler_nstruct_mode", "simple_cycpep_predict_terminal_disulfide_tails_2", "helical_bundle_predict_psipred_with_helix_globals", "simple_cycpep_predict_lanthionine", "simple_cycpep_predict_terminal_disulfide_tails", "helical_bundle_predict_sequence", "simple_cycpep_predict_design", "simple_cycpep_predict_sidechain_isopeptide", "simple_cycpep_predict_bondangle_bondlength", "recon_design_mpi", "replica_docking", "simple_cycpep_predict_nterm_isopeptide_lariat_tailless", "mpi_simple_cycpep_predict", "mpi_simple_cycpep_predict_4level", "features_pdb_mpi", "simple_cycpep_predict_sidechain_isopeptide_reverse", "threefold_symm_peptide_design" ], "total": 28 }, "tests": { "backbonegridsampler_nstruct_mode": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62131/backbonegridsampler_nstruct_mode/log and /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode/log differ\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0001.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0002.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0003.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0004.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0005.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0006.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0007.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0008.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0009.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0010.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0011.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0012.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0013.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0014.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0015.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0016.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0017.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0018.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0019.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0020.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0021.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0022.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0023.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0024.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: score_sorted.sc\r\nOnly in /home/benchmark/working_dir/main:62131/backbonegridsampler_nstruct_mode: .test_did_not_run.log\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62131/backbonegridsampler_nstruct_mode/log /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode/log\r\n1,8d0\r\n< --------------------------------------------------------------------------\r\n< The value of the MCA parameter \"plm_rsh_agent\" was set to a path\r\n< that could not be found:\r\n< \r\n< plm_rsh_agent: ssh : rsh\r\n< \r\n< Please either unset the parameter, or check that the path is correct\r\n< --------------------------------------------------------------------------\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0001.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0002.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0003.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0004.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0005.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0006.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0007.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0008.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0009.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0010.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0011.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0012.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0013.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0014.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0015.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0016.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0017.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0018.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0019.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0020.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0021.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0022.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0023.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: S_0024.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/backbonegridsampler_nstruct_mode: score_sorted.sc\r\nOnly in /home/benchmark/working_dir/main:62131/backbonegridsampler_nstruct_mode: .test_did_not_run.log\r\n", "state": "failed" }, "database_md5": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62131/database_md5/database_md5s.txt and /home/benchmark/working_dir/main:62132/database_md5/database_md5s.txt differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62131/database_md5/database_md5s.txt /home/benchmark/working_dir/main:62132/database_md5/database_md5s.txt\r\n1,2d0\r\n< 4ef19f47bc3ca32b82d0627e1026fc01 ./additional_protocol_data/.git\r\n< 5fbf125d44040003ded7b6d8f011d101 ./additional_protocol_data/antibody/README.md\r\n2841,2843d2838\r\n< 7aef8d49feb1dd8e475ccc9a3006c662 ./additional_protocol_data/antibody/blast_database/database.H3.3.phr\r\n< 0080999c0b4c2357dce77965898eabe5 ./additional_protocol_data/antibody/blast_database/database.H3.3.pin\r\n< a7f2962cc3f35de9782c6b524f8578aa ./additional_protocol_data/antibody/blast_database/database.H3.3.psq\r\n2847a2843,2845\r\n> 7aef8d49feb1dd8e475ccc9a3006c662 ./additional_protocol_data/antibody/blast_database/database.H3.3.phr\r\n> 0080999c0b4c2357dce77965898eabe5 ./additional_protocol_data/antibody/blast_database/database.H3.3.pin\r\n> a7f2962cc3f35de9782c6b524f8578aa ./additional_protocol_data/antibody/blast_database/database.H3.3.psq\r\n2849,2851d2846\r\n< fccbce74ae0414f7ad9af425eebd1b72 ./additional_protocol_data/antibody/blast_database/database.H3.4.phr\r\n< 542c457dc006df937514925b680c1a1c ./additional_protocol_data/antibody/blast_database/database.H3.4.pin\r\n< 661534c60f7ce518683a454a5c482cc3 ./additional_protocol_data/antibody/blast_database/database.H3.4.psq\r\n2855a2851,2853\r\n> fccbce74ae0414f7ad9af425eebd1b72 ./additional_protocol_data/antibody/blast_database/database.H3.4.phr\r\n> 542c457dc006df937514925b680c1a1c ./additional_protocol_data/antibody/blast_database/database.H3.4.pin\r\n> 661534c60f7ce518683a454a5c482cc3 ./additional_protocol_data/antibody/blast_database/database.H3.4.psq\r\n2857,2859d2854\r\n< d77df49d4f8954d8f06a9677d2e0ee8d ./additional_protocol_data/antibody/blast_database/database.H3.5.phr\r\n< bc9e1a233e13edb0278275fff6661f88 ./additional_protocol_data/antibody/blast_database/database.H3.5.pin\r\n< 3cbf814abfdd30c99ad7f7d6a1a04c88 ./additional_protocol_data/antibody/blast_database/database.H3.5.psq\r\n2867a2863,2865\r\n> d77df49d4f8954d8f06a9677d2e0ee8d ./additional_protocol_data/antibody/blast_database/database.H3.5.phr\r\n> bc9e1a233e13edb0278275fff6661f88 ./additional_protocol_data/antibody/blast_database/database.H3.5.pin\r\n> 3cbf814abfdd30c99ad7f7d6a1a04c88 ./additional_protocol_data/antibody/blast_database/database.H3.5.psq\r\n2869,2871d2866\r\n< 55a5598991a9f298ade43ec82e9f4c15 ./additional_protocol_data/antibody/blast_database/database.H3.6.phr\r\n< 856232074776d0513541c6358ca9dbc2 ./additional_protocol_data/antibody/blast_database/database.H3.6.pin\r\n< 8bc5fb2ee15793342625980756486135 ./additional_protocol_data/antibody/blast_database/database.H3.6.psq\r\n2875a2871,2873\r\n> 55a5598991a9f298ade43ec82e9f4c15 ./additional_protocol_data/antibody/blast_database/database.H3.6.phr\r\n> 856232074776d0513541c6358ca9dbc2 ./additional_protocol_data/antibody/blast_database/database.H3.6.pin\r\n> 8bc5fb2ee15793342625980756486135 ./additional_protocol_data/antibody/blast_database/database.H3.6.psq\r\n3026d3023\r\n< 191f474ac8a5f9b60421c7d5fb7bff90 ./additional_protocol_data/antibody/info/frl.info\r\n3027a3025\r\n> 191f474ac8a5f9b60421c7d5fb7bff90 ./additional_protocol_data/antibody/info/frl.info\r\n3030a3029,3030\r\n> 5fbf125d44040003ded7b6d8f011d101 ./additional_protocol_data/antibody/README.md\r\n> 4ef19f47bc3ca32b82d0627e1026fc01 ./additional_protocol_data/.git\r\n3432d3431\r\n< 6b69acec82635879f13b95515328f2d3 ./additional_protocol_data/sewing/xsmax_bb_ss_AILV_resl0.8_msc0.3/xsmax_bb_ss_AILV_resl0.8_msc0.3.rpm.bin.gz\r\n3442,3444c3441\r\n< 397421a097a5ffc74ce3957107315c4b ./additional_protocol_data/splice/antibodies/RBO_databases/kappa/rb.database\r\n< 71efc6a74fe3dabd7be7b9e6168166dc ./additional_protocol_data/splice/antibodies/RBO_databases/lambda/rb.database\r\n< 397421a097a5ffc74ce3957107315c4b ./additional_protocol_data/splice/antibodies/RBO_databases/rb.2BRR.database\r\n---\r\n> 6b69acec82635879f13b95515328f2d3 ./additional_protocol_data/sewing/xsmax_bb_ss_AILV_resl0.8_msc0.3/xsmax_bb_ss_AILV_resl0.8_msc0.3.rpm.bin.gz\r\n16264a16262,16264\r\n> 397421a097a5ffc74ce3957107315c4b ./additional_protocol_data/splice/antibodies/RBO_databases/kappa/rb.database\r\n> 71efc6a74fe3dabd7be7b9e6168166dc ./additional_protocol_data/splice/antibodies/RBO_databases/lambda/rb.database\r\n> 397421a097a5ffc74ce3957107315c4b ./additional_protocol_data/splice/antibodies/RBO_databases/rb.2BRR.database\r\n16270a16271\r\n> b103e5cabc0dc1e890d9757a3e6bd8a7 ./additional_protocol_data/splice/antibodies/torsion_databases/lambda/deposition_dates.txt\r\n16275d16275\r\n< b103e5cabc0dc1e890d9757a3e6bd8a7 ./additional_protocol_data/splice/antibodies/torsion_databases/lambda/deposition_dates.txt\r\n16475,16478d16474\r\n< f9e3c5abd350b33b7a91d5a22116b3db ./additional_protocol_data/tcr/seq/A_TCR_CDR2HV4_25.fasta\r\n< f291c025fda2beb892ce78e3b44e2943 ./additional_protocol_data/tcr/seq/A_TCR_CDR2HV4_26.fasta\r\n< 47d5e7890cdc50ed3274b3fece40b9fa ./additional_protocol_data/tcr/seq/A_TCR_CDR2HV4_27.fasta\r\n< 632b3b2ca0f04c13d3ab1a0870218b6a ./additional_protocol_data/tcr/seq/A_TCR_CDR2HV4_28.fasta\r\n16482a16479,16482\r\n> f9e3c5abd350b33b7a91d5a22116b3db ./additional_protocol_data/tcr/seq/A_TCR_CDR2HV4_25.fasta\r\n> f291c025fda2beb892ce78e3b44e2943 ./additional_protocol_data/tcr/seq/A_TCR_CDR2HV4_26.fasta\r\n> 47d5e7890cdc50ed3274b3fece40b9fa ./additional_protocol_data/tcr/seq/A_TCR_CDR2HV4_27.fasta\r\n> 632b3b2ca0f04c13d3ab1a0870218b6a ./additional_protocol_data/tcr/seq/A_TCR_CDR2HV4_28.fasta\r\n16498a16499\r\n> 2f1e876acf8a73bbf4afe66d702617cb ./additional_protocol_data/tcr/seq/blastdb_commands.txt\r\n16501,16504d16501\r\n< 17e069b8cd542f99c5f6ded84ebb6185 ./additional_protocol_data/tcr/seq/B_TCR_CDR2HV4_28.fasta\r\n< cb0e90f31b4f8fca5256c85da0ed0dc4 ./additional_protocol_data/tcr/seq/B_TCR_CDR2HV4_29.fasta\r\n< a7250c0398613af6b8532e9a97c33ac2 ./additional_protocol_data/tcr/seq/B_TCR_CDR2HV4_30.fasta\r\n< de4ef4e7eed328432ee3ab0577da6b90 ./additional_protocol_data/tcr/seq/B_TCR_CDR2HV4_31.fasta\r\n16508a16506,16509\r\n> 17e069b8cd542f99c5f6ded84ebb6185 ./additional_protocol_data/tcr/seq/B_TCR_CDR2HV4_28.fasta\r\n> cb0e90f31b4f8fca5256c85da0ed0dc4 ./additional_protocol_data/tcr/seq/B_TCR_CDR2HV4_29.fasta\r\n> a7250c0398613af6b8532e9a97c33ac2 ./additional_protocol_data/tcr/seq/B_TCR_CDR2HV4_30.fasta\r\n> de4ef4e7eed328432ee3ab0577da6b90 ./additional_protocol_data/tcr/seq/B_TCR_CDR2HV4_31.fasta\r\n16528d16528\r\n< 2f1e876acf8a73bbf4afe66d702617cb ./additional_protocol_data/tcr/seq/blastdb_commands.txt\r\n16549,16550d16548\r\n< 205a7dd23ea211681f56213eb6f2191b ./chemical/atom_type_sets/fa_standard/extras.txt\r\n< 4936adfa080a57608f4a0398c770ec2f ./chemical/atom_type_sets/fa_standard/extras/NACCESS_sasa_radii.txt\r\n16556d16553\r\n< 1e75039ce056c89fb1251ffa0fd752af ./chemical/atom_type_sets/fa_standard/extras/lk_ball_wtd.txt\r\n16559a16557\r\n> 1e75039ce056c89fb1251ffa0fd752af ./chemical/atom_type_sets/fa_standard/extras/lk_ball_wtd.txt\r\n16562a16561\r\n> 4936adfa080a57608f4a0398c770ec2f ./chemical/atom_type_sets/fa_standard/extras/NACCESS_sasa_radii.txt\r\n16567,16570c16566\r\n< d7cc24faf38d35809152ac378366a16d ./chemical/atom_type_sets/fa_standard/ideal_bond_lengths.txt\r\n< 98bf535bd5a364fdba965713b13a73d7 ./chemical/atom_type_sets/fa_standard/meta.txt\r\n< 1c9cff136fef9c88dc3a0c6dcda2072f ./chemical/atom_type_sets/fa_standard/occluded_hbond_solvation_params.acceptors.txt\r\n< 61a9d205ecb98f06e6a9140623a6aae5 ./chemical/atom_type_sets/fa_standard/occluded_hbond_solvation_params.donors.txt\r\n---\r\n> 205a7dd23ea211681f56213eb6f2191b ./chemical/atom_type_sets/fa_standard/extras.txt\r\n16574,16575d16569\r\n< 205a7dd23ea211681f56213eb6f2191b ./chemical/atom_type_sets/fa_standard_genpot/extras.txt\r\n< 96011d4dd538fca264021c34b4d4dbbf ./chemical/atom_type_sets/fa_standard_genpot/extras/NACCESS_sasa_radii.txt\r\n16581d16574\r\n< 1e75039ce056c89fb1251ffa0fd752af ./chemical/atom_type_sets/fa_standard_genpot/extras/lk_ball_wtd.txt\r\n16584a16578\r\n> 1e75039ce056c89fb1251ffa0fd752af ./chemical/atom_type_sets/fa_standard_genpot/extras/lk_ball_wtd.txt\r\n16587a16582\r\n> 96011d4dd538fca264021c34b4d4dbbf ./chemical/atom_type_sets/fa_standard_genpot/extras/NACCESS_sasa_radii.txt\r\n16591a16587\r\n> 205a7dd23ea211681f56213eb6f2191b ./chemical/atom_type_sets/fa_standard_genpot/extras.txt\r\n16595a16592,16595\r\n> d7cc24faf38d35809152ac378366a16d ./chemical/atom_type_sets/fa_standard/ideal_bond_lengths.txt\r\n> 98bf535bd5a364fdba965713b13a73d7 ./chemical/atom_type_sets/fa_standard/meta.txt\r\n> 1c9cff136fef9c88dc3a0c6dcda2072f ./chemical/atom_type_sets/fa_standard/occluded_hbond_solvation_params.acceptors.txt\r\n> 61a9d205ecb98f06e6a9140623a6aae5 ./chemical/atom_type_sets/fa_standard/occluded_hbond_solvation_params.donors.txt\r\n16598,16599d16597\r\n< 205a7dd23ea211681f56213eb6f2191b ./chemical/atom_type_sets/fa_standard_talaris/extras.txt\r\n< 430e3118c99eff6a67293e09a5876f06 ./chemical/atom_type_sets/fa_standard_talaris/extras/NACCESS_sasa_radii.txt\r\n16605d16602\r\n< 3bcbf0a76eaeea66b51a0b11ca741a1d ./chemical/atom_type_sets/fa_standard_talaris/extras/lk_ball_wtd.txt\r\n16608a16606\r\n> 3bcbf0a76eaeea66b51a0b11ca741a1d ./chemical/atom_type_sets/fa_standard_talaris/extras/lk_ball_wtd.txt\r\n16611a16610\r\n> 430e3118c99eff6a67293e09a5876f06 ./chemical/atom_type_sets/fa_standard_talaris/extras/NACCESS_sasa_radii.txt\r\n16615a16615\r\n> 205a7dd23ea211681f56213eb6f2191b ./chemical/atom_type_sets/fa_standard_talaris/extras.txt\r\n16621,16623d16620\r\n< bac7005221032abd533fc2883f9dbc65 ./chemical/carbohydrates/common_glycans/N-glycan_core.iupac\r\n< a3807a3312100d9021c4e8005cde82da ./chemical/carbohydrates/common_glycans/README.txt\r\n< dbb43e457b8d1fe7feadb50f8145b117 ./chemical/carbohydrates/common_glycans/bisected_N-glycan_core.iupac\r\n16624a16622\r\n> dbb43e457b8d1fe7feadb50f8145b117 ./chemical/carbohydrates/common_glycans/bisected_N-glycan_core.iupac\r\n16636,16637d16633\r\n< b57ecb6a6f277967e846ddfc56d1c0ab ./chemical/carbohydrates/common_glycans/hybrid_N-glycan_core.iupac\r\n< ea89308725b70c259201b2495a87031b ./chemical/carbohydrates/common_glycans/hybrid_bisected_N-glycan_core.iupac\r\n16638a16635\r\n> ea89308725b70c259201b2495a87031b ./chemical/carbohydrates/common_glycans/hybrid_bisected_N-glycan_core.iupac\r\n16639a16637\r\n> b57ecb6a6f277967e846ddfc56d1c0ab ./chemical/carbohydrates/common_glycans/hybrid_N-glycan_core.iupac\r\n16641a16640,16641\r\n> bac7005221032abd533fc2883f9dbc65 ./chemical/carbohydrates/common_glycans/N-glycan_core.iupac\r\n> a3807a3312100d9021c4e8005cde82da ./chemical/carbohydrates/common_glycans/README.txt\r\n16643d16642\r\n< 745646c471652738ba3ab3ff91806791 ./chemical/carbohydrates/linkage_conformers/original.table\r\n16646a16646\r\n> 745646c471652738ba3ab3ff91806791 ./chemical/carbohydrates/linkage_conformers/original.table\r\n16661d16660\r\n< 46ae7b9b9dc0e9ca4790bcd3a940308f ./chemical/pdb_components/README_components.txt\r\n16698d16696\r\n< 8a8ac8762b4dfbb31b1ae483d5767a88 ./chemical/pdb_components/override.txt\r\n16699a16698,16699\r\n> 8a8ac8762b4dfbb31b1ae483d5767a88 ./chemical/pdb_components/override.txt\r\n> 46ae7b9b9dc0e9ca4790bcd3a940308f ./chemical/pdb_components/README_components.txt\r\n16704d16703\r\n< fa7cc1ebd3a7612c0dcbdce1a54942c6 ./chemical/residue_type_sets/centroid/metapatches.txt\r\n16708,16720c16707\r\n< bc1881185b52b9edf89f1a389099d046 ./chemical/residue_type_sets/centroid/patches.txt\r\n< 6d17ea194d5ca7ef9b60fc3f542ebe0a ./chemical/residue_type_sets/centroid/patches.txt.slim\r\n< 35339569e4c3f1a317755ca55ca0d6bd ./chemical/residue_type_sets/centroid/patches/C_methylamidated.txt\r\n< dba92db0372d119de830358937bad50d ./chemical/residue_type_sets/centroid/patches/CtermProtein.txt\r\n< 1f8e3d746a69f8b154b481318d23e452 ./chemical/residue_type_sets/centroid/patches/CtermTruncation.txt\r\n< aa08341bf9528937a60fad1dfbdc89b2 ./chemical/residue_type_sets/centroid/patches/D_AA.txt\r\n< 0b5198668ffa9e75626ccecd276aac7f ./chemical/residue_type_sets/centroid/patches/N_acetylated.txt\r\n< 342e2afe4129b2fd9d86a93db74022ef ./chemical/residue_type_sets/centroid/patches/NtermProtein.txt\r\n< 78facaa28083c7ebaa51edafb3086cd0 ./chemical/residue_type_sets/centroid/patches/NtermTruncation.txt\r\n< 40e6359fa187a35a3ca81356be80bdc1 ./chemical/residue_type_sets/centroid/patches/RepulsiveOnly_centroid.txt\r\n< a9d3b72d5308ecdd59c77a61f67b53c9 ./chemical/residue_type_sets/centroid/patches/ShoveBB.txt\r\n< 65366986bab009eb5846a05816bab6d9 ./chemical/residue_type_sets/centroid/patches/VirtualBB.txt\r\n< de9a6cc033aed0b0846bacd87fda5167 ./chemical/residue_type_sets/centroid/patches/VirtualNterm.txt\r\n---\r\n> fa7cc1ebd3a7612c0dcbdce1a54942c6 ./chemical/residue_type_sets/centroid/metapatches.txt\r\n16757a16745,16747\r\n> ea3694199b1bbf038bffa028b0ebdc79 ./chemical/residue_type_sets/centroid/patches/carbohydrates/cutpoint_lower.txt\r\n> 5715cbe31fe27c5be58b10ac94427a7e ./chemical/residue_type_sets/centroid/patches/carbohydrates/cutpoint_upper.txt\r\n> ed014fe18b5d6c3e97f8a04fff123c42 ./chemical/residue_type_sets/centroid/patches/carbohydrates/lower_terminus.txt\r\n16759,16761d16748\r\n< b8c2ae536dcc818c25d57a92e878d689 ./chemical/residue_type_sets/centroid/patches/carbohydrates/N-R-3'-hydroxybutyryl-3-amination.txt\r\n< 0b0732ece9e12bdfcdf7299460f7b493 ./chemical/residue_type_sets/centroid/patches/carbohydrates/N-acetyl-2-amination.txt\r\n< aa7a25f64f2cab302e446dfce4955d74 ./chemical/residue_type_sets/centroid/patches/carbohydrates/N-linked_glycosylation.txt\r\n16765a16753,16755\r\n> 0b0732ece9e12bdfcdf7299460f7b493 ./chemical/residue_type_sets/centroid/patches/carbohydrates/N-acetyl-2-amination.txt\r\n> aa7a25f64f2cab302e446dfce4955d74 ./chemical/residue_type_sets/centroid/patches/carbohydrates/N-linked_glycosylation.txt\r\n> b8c2ae536dcc818c25d57a92e878d689 ./chemical/residue_type_sets/centroid/patches/carbohydrates/N-R-3'-hydroxybutyryl-3-amination.txt\r\n16777,16780d16766\r\n< 546193fa7af61f5c2bd8a481e6f3df80 ./chemical/residue_type_sets/centroid/patches/carbohydrates/README.txt\r\n< ea3694199b1bbf038bffa028b0ebdc79 ./chemical/residue_type_sets/centroid/patches/carbohydrates/cutpoint_lower.txt\r\n< 5715cbe31fe27c5be58b10ac94427a7e ./chemical/residue_type_sets/centroid/patches/carbohydrates/cutpoint_upper.txt\r\n< ed014fe18b5d6c3e97f8a04fff123c42 ./chemical/residue_type_sets/centroid/patches/carbohydrates/lower_terminus.txt\r\n16781a16768\r\n> 546193fa7af61f5c2bd8a481e6f3df80 ./chemical/residue_type_sets/centroid/patches/carbohydrates/README.txt\r\n16782a16770,16773\r\n> 35339569e4c3f1a317755ca55ca0d6bd ./chemical/residue_type_sets/centroid/patches/C_methylamidated.txt\r\n> dba92db0372d119de830358937bad50d ./chemical/residue_type_sets/centroid/patches/CtermProtein.txt\r\n> 1f8e3d746a69f8b154b481318d23e452 ./chemical/residue_type_sets/centroid/patches/CtermTruncation.txt\r\n> aa08341bf9528937a60fad1dfbdc89b2 ./chemical/residue_type_sets/centroid/patches/D_AA.txt\r\n16783a16775,16777\r\n> 0b5198668ffa9e75626ccecd276aac7f ./chemical/residue_type_sets/centroid/patches/N_acetylated.txt\r\n> 342e2afe4129b2fd9d86a93db74022ef ./chemical/residue_type_sets/centroid/patches/NtermProtein.txt\r\n> 78facaa28083c7ebaa51edafb3086cd0 ./chemical/residue_type_sets/centroid/patches/NtermTruncation.txt\r\n16796a16791\r\n> 40e6359fa187a35a3ca81356be80bdc1 ./chemical/residue_type_sets/centroid/patches/RepulsiveOnly_centroid.txt\r\n16797a16793\r\n> a9d3b72d5308ecdd59c77a61f67b53c9 ./chemical/residue_type_sets/centroid/patches/ShoveBB.txt\r\n16798a16795,16796\r\n> bc1881185b52b9edf89f1a389099d046 ./chemical/residue_type_sets/centroid/patches.txt\r\n> 6d17ea194d5ca7ef9b60fc3f542ebe0a ./chemical/residue_type_sets/centroid/patches.txt.slim\r\n16800c16798,16868\r\n< 98ac1a997c915e16533d4b7026f70cac ./chemical/residue_type_sets/centroid/residue_types.txt\r\n---\r\n> 65366986bab009eb5846a05816bab6d9 ./chemical/residue_type_sets/centroid/patches/VirtualBB.txt\r\n> de9a6cc033aed0b0846bacd87fda5167 ./chemical/residue_type_sets/centroid/patches/VirtualNterm.txt\r\n> a5c6a716d6b702bbcc49048e8e282a4f ./chemical/residue_type_sets/centroid_pre_talaris2013/merge_residue_behaviors.txt\r\n> 7d1696aa96ab4eae80fa10bcd88797d8 ./chemical/residue_type_sets/centroid_pre_talaris2013/metapatches.txt\r\n> 35339569e4c3f1a317755ca55ca0d6bd ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/C_methylamidated.txt\r\n> 41f77546ee1d217dd750ec79878e39e3 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/CtermProtein.txt\r\n> 1f8e3d746a69f8b154b481318d23e452 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/CtermTruncation.txt\r\n> f59e3e43a78fb01969570795e3319342 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/D_AA.txt\r\n> 07a6c5788757a86b3eb4c406b72edf38 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/disulfide.txt\r\n> 3e20475ce859a6c3a7c69c4f3f104d75 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/LowerDNA.txt\r\n> 0b5198668ffa9e75626ccecd276aac7f ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/N_acetylated.txt\r\n> 342e2afe4129b2fd9d86a93db74022ef ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/NtermProtein.txt\r\n> 78facaa28083c7ebaa51edafb3086cd0 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/NtermTruncation.txt\r\n> 3bff6f35a4f53da8ac59963b19801eeb ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/oop_post.txt\r\n> aa02004370365a8060fb27ec22891222 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/oop_pre.txt\r\n> beb3307e27735cc5881a943345831664 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/pro_hydroxylated_case1.txt\r\n> e2bcdb865d6782847dabbc731981c4a8 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/pro_hydroxylated_case2.txt\r\n> a05ab6da2e1a0872cddca7bcfe2e291e ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/protein_centroid_with_HA.txt\r\n> fac36687295c300c82663d2c347f9b93 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/protein_cutpoint_lower.txt\r\n> 9771394a6c9df380950e28ce353ca7da ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/protein_cutpoint_upper.txt\r\n> 40e6359fa187a35a3ca81356be80bdc1 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/RepulsiveOnly_centroid.txt\r\n> 0c6e349c04aa3c0f69f8c2527170d355 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/ser_phosphorylated.txt\r\n> 79fedada1025e5e3c80dc6fb660654e2 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/ShoveBB.txt\r\n> 1c1f3edc22acd6c94e57c6ca3aa0ba94 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/thr_phosphorylated.txt\r\n> c31ce9b2e388861400e32908a1ab47cf ./chemical/residue_type_sets/centroid_pre_talaris2013/patches.txt\r\n> 6d17ea194d5ca7ef9b60fc3f542ebe0a ./chemical/residue_type_sets/centroid_pre_talaris2013/patches.txt.slim\r\n> 25b2c7162faeeacf340ad3e90ed19368 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/tyr_sulfated.txt\r\n> 447e7a42a72766086b4f4e8fc7fed919 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/UpperDNA.txt\r\n> 65366986bab009eb5846a05816bab6d9 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/VirtualBB.txt\r\n> 2c6ff787a3ca6b9bf12c94c456215d33 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/VirtualDNAPhosphate.txt\r\n> de9a6cc033aed0b0846bacd87fda5167 ./chemical/residue_type_sets/centroid_pre_talaris2013/patches/VirtualNterm.txt\r\n> 350861463c96f2a890c9b69bb140c818 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/08A.params\r\n> c0c4be3534870b6fb049189767f68337 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/08B.params\r\n> 072869e871a6095f176cf5e6b9511fc2 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/ADE.params\r\n> 065258c04c349587dca7694dd3ee7c26 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/ALA.params\r\n> 06302fed99ffa6dfeb679b43ffbd8fa0 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/ARG.params\r\n> 42472e9bd3c6f6f24075cc69646c7476 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/ASN.params\r\n> 2ef6159d9873d1ccda06561dfc682737 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/ASP.params\r\n> a68a6a674718309a2b67fd6472c930c7 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/CYS.params\r\n> 371d9ff38d40e37c790bc619a63f6cfc ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/CYT.params\r\n> 781b678d5261a2ea9c8ae0bdd8da4211 ./chemical/residue_type_sets/centroid_pre_talaris2013/residue_types/CYV.params\r\n> 9eede106670254a97ba2d6636363d7e9 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b072addedc2a9ffa1f6efa0338b32671 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/metal_ions/ZN.params\r\n> aede3a663586f02af9b2ef2035a7ebca ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/MET.params\r\n> 5c7c65d26e2a4f8339367dea14377e0c ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/PHE.params\r\n> 183bdce57cbcf74ef6932ae5ebe03c76 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/PRO.params\r\n> 3af090589bc595ba0a3b7163fd224982 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/SER.params\r\n> 0a02f2045a7e81696a54bfb9b8a780bc ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/SUCK.params\r\n> d713f77e59d0f25fba38e11e7df1c6eb ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/THR.params\r\n> 40b54f48f78a1421b6a16dd0572b2da8 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/THY.params\r\n> 7370677253f34f8f68e228fe17ad0165 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/TP3.params\r\n> ac6ea73705ea5702479aa0a852e91f38 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/TP5.params\r\n> 0703f0dbd2131bf07de6aab496f767f2 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/TRP.params\r\n> 87d62d23e8dddbcfd779a015944aafd6 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types.txt\r\n> 61f3f749fab25be3fa10e0a5636a0211 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/TYR.params\r\n> 3b84c966beb53661ab1ef02fd5f8f178 ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/VAL.params\r\n> 1797f24d031d7ec7331b350b48b25d1b ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/VRT1.params\r\n> 94a3f6d337bd3c8a4c7e4ed24be6805a ./chemical/residue_type_sets/fa_standard_05.2009_icoor/residue_types/VRT.params\r\n17685d17786\r\n< d9b33ad01ffc1b15e02c3455ebb97410 ./chemical/residue_type_sets/fa_standard/metapatches.txt\r\n17698,17731c17799\r\n< 4e3c74aa7473f19472207aa35d53b2ad ./chemical/residue_type_sets/fa_standard/patches.txt\r\n< bdb4105729e29322a8820f6695c4090a ./chemical/residue_type_sets/fa_standard/patches.txt.slim\r\n< a550ed572bda7f7f7d2df196132651c6 ./chemical/residue_type_sets/fa_standard/patches/AcetylatedPeptoidNterm.txt\r\n< cdf63b349b63e3da612ca92e33498a69 ./chemical/residue_type_sets/fa_standard/patches/AcetylatedProteinNterm.txt\r\n< c7e446e38d20fa9c0b5f759cf62f2a4b ./chemical/residue_type_sets/fa_standard/patches/AcetylatedProteinNtermConnection.txt\r\n< 0ade27c069a53805c5a0d22617a0f4b8 ./chemical/residue_type_sets/fa_standard/patches/C_methylamidated.txt\r\n< da934057d3d71ee954afac5045ed4566 ./chemical/residue_type_sets/fa_standard/patches/CtermPeptoidFull.txt\r\n< 613f5b60a04acf7c384a83c45eb9b3a0 ./chemical/residue_type_sets/fa_standard/patches/CtermProteinFull.txt\r\n< 6aafbc3870935b75fc99aeca34c7b9cb ./chemical/residue_type_sets/fa_standard/patches/CtermTruncation.txt\r\n< 5024dde0b45cd7965bbcc03c00b59971 ./chemical/residue_type_sets/fa_standard/patches/Cterm_amidation.txt\r\n< aa08341bf9528937a60fad1dfbdc89b2 ./chemical/residue_type_sets/fa_standard/patches/D_AA.txt\r\n< de7d462cfafcbcea12666e772db5c9c2 ./chemical/residue_type_sets/fa_standard/patches/DimethylatedProteinCterm.txt\r\n< 2930cf006d6876f3fed5c6a0616e78a0 ./chemical/residue_type_sets/fa_standard/patches/MethylatedProteinCterm.txt\r\n< 85eff15e44054bb049c755304e801327 ./chemical/residue_type_sets/fa_standard/patches/N_acetylated.txt\r\n< f836126e2bf30274a2a7584124586a8c ./chemical/residue_type_sets/fa_standard/patches/N_formylated.txt\r\n< 43a8f7b83b6c5605e9278d5c83cd0088 ./chemical/residue_type_sets/fa_standard/patches/N_methylation.txt\r\n< bac9fc639ef0b2e303e78aec734996b9 ./chemical/residue_type_sets/fa_standard/patches/Nterm2_Oxobutrylation.txt\r\n< b3c2d332a81068b7285fab02d5fbf021 ./chemical/residue_type_sets/fa_standard/patches/NtermCtermDipeptoid.txt\r\n< 2f450896c3ff78702dcea49b7da662d3 ./chemical/residue_type_sets/fa_standard/patches/NtermPeptoidFull.txt\r\n< 3b93d9b05e1da4c14f90596baf4fe9d3 ./chemical/residue_type_sets/fa_standard/patches/NtermProteinFull.txt\r\n< 3ed8fbd76e1b0cabe04f0cb35ad1b5dc ./chemical/residue_type_sets/fa_standard/patches/NtermProteinMethylated.txt\r\n< 466d886c3f5271f906ed1f22c4a2ef86 ./chemical/residue_type_sets/fa_standard/patches/NtermTruncation.txt\r\n< 2f605af98240a574c889973008eee0eb ./chemical/residue_type_sets/fa_standard/patches/PtermProteinFull.txt\r\n< 6b05493fcaeb9c88ee2c9a55b2ef0142 ./chemical/residue_type_sets/fa_standard/patches/RPEPTOID.txt\r\n< 94337e89066eb2b1c319c8be9533e555 ./chemical/residue_type_sets/fa_standard/patches/ReplsBB.txt\r\n< be62dfcd5b902238e7c6e98eeef65016 ./chemical/residue_type_sets/fa_standard/patches/RepulsiveOnly_fa.txt\r\n< e4357e6786d5c2eb944176549908e9c2 ./chemical/residue_type_sets/fa_standard/patches/SC_Fragment.txt\r\n< 27309023fcd78c81f5db444eb8c147ed ./chemical/residue_type_sets/fa_standard/patches/ShoveBB.txt\r\n< f5aef0106cd04a3493571d8ab2e1148e ./chemical/residue_type_sets/fa_standard/patches/SidechainConjugation.txt\r\n< 8c4acc378986d6613aabc242773c22ad ./chemical/residue_type_sets/fa_standard/patches/SpecialRotamer.txt\r\n< 45c15f384a8a50fe71ac80adbbcc3c5e ./chemical/residue_type_sets/fa_standard/patches/VirtualBB.txt\r\n< 13986000048ac1bd1524cd939b6b3a63 ./chemical/residue_type_sets/fa_standard/patches/VirtualNterm.txt\r\n< 2ea3eebe0b4a46ecd2c2bd449f3c146d ./chemical/residue_type_sets/fa_standard/patches/VirtualProteinSideChain.txt\r\n< 54446d1beb208506bf4ef0278370fc44 ./chemical/residue_type_sets/fa_standard/patches/VirtualResidue.txt\r\n---\r\n> d9b33ad01ffc1b15e02c3455ebb97410 ./chemical/residue_type_sets/fa_standard/metapatches.txt\r\n17733a17802,17806\r\n> a550ed572bda7f7f7d2df196132651c6 ./chemical/residue_type_sets/fa_standard/patches/AcetylatedPeptoidNterm.txt\r\n> c7e446e38d20fa9c0b5f759cf62f2a4b ./chemical/residue_type_sets/fa_standard/patches/AcetylatedProteinNtermConnection.txt\r\n> cdf63b349b63e3da612ca92e33498a69 ./chemical/residue_type_sets/fa_standard/patches/AcetylatedProteinNterm.txt\r\n> 37be50671955a28315a792deab9097b6 ./chemical/residue_type_sets/fa_standard/patches/branching/aryl-C-conjugated.txt\r\n> d39c0db1d2e5d73840d41997f1d8fd4d ./chemical/residue_type_sets/fa_standard/patches/branching/aryl-O-conjugated.txt\r\n17738,17740d17810\r\n< 1f3dbe99a9a0bf1dd81f9602c1a75957 ./chemical/residue_type_sets/fa_standard/patches/branching/S-linked_conjugation.txt\r\n< 37be50671955a28315a792deab9097b6 ./chemical/residue_type_sets/fa_standard/patches/branching/aryl-C-conjugated.txt\r\n< d39c0db1d2e5d73840d41997f1d8fd4d ./chemical/residue_type_sets/fa_standard/patches/branching/aryl-O-conjugated.txt\r\n17743a17814\r\n> 1f3dbe99a9a0bf1dd81f9602c1a75957 ./chemical/residue_type_sets/fa_standard/patches/branching/S-linked_conjugation.txt\r\n17775a17847,17849\r\n> ea3694199b1bbf038bffa028b0ebdc79 ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/cutpoint_lower.txt\r\n> 5715cbe31fe27c5be58b10ac94427a7e ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/cutpoint_upper.txt\r\n> ed014fe18b5d6c3e97f8a04fff123c42 ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/lower_terminus.txt\r\n17777,17779d17850\r\n< b8c2ae536dcc818c25d57a92e878d689 ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/N-R-3'-hydroxybutyryl-3-amination.txt\r\n< 0b0732ece9e12bdfcdf7299460f7b493 ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/N-acetyl-2-amination.txt\r\n< 2fbc1b26c441f870189a5ad4c8edcc41 ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/N-linked_glycosylation.txt\r\n17783a17855,17857\r\n> 0b0732ece9e12bdfcdf7299460f7b493 ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/N-acetyl-2-amination.txt\r\n> 2fbc1b26c441f870189a5ad4c8edcc41 ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/N-linked_glycosylation.txt\r\n> b8c2ae536dcc818c25d57a92e878d689 ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/N-R-3'-hydroxybutyryl-3-amination.txt\r\n17795,17797d17868\r\n< ea3694199b1bbf038bffa028b0ebdc79 ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/cutpoint_lower.txt\r\n< 5715cbe31fe27c5be58b10ac94427a7e ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/cutpoint_upper.txt\r\n< ed014fe18b5d6c3e97f8a04fff123c42 ./chemical/residue_type_sets/fa_standard/patches/carbohydrates/lower_terminus.txt\r\n17799a17871\r\n> 0ade27c069a53805c5a0d22617a0f4b8 ./chemical/residue_type_sets/fa_standard/patches/C_methylamidated.txt\r\n17800a17873,17876\r\n> 5024dde0b45cd7965bbcc03c00b59971 ./chemical/residue_type_sets/fa_standard/patches/Cterm_amidation.txt\r\n> da934057d3d71ee954afac5045ed4566 ./chemical/residue_type_sets/fa_standard/patches/CtermPeptoidFull.txt\r\n> 613f5b60a04acf7c384a83c45eb9b3a0 ./chemical/residue_type_sets/fa_standard/patches/CtermProteinFull.txt\r\n> 6aafbc3870935b75fc99aeca34c7b9cb ./chemical/residue_type_sets/fa_standard/patches/CtermTruncation.txt\r\n17801a17878,17879\r\n> aa08341bf9528937a60fad1dfbdc89b2 ./chemical/residue_type_sets/fa_standard/patches/D_AA.txt\r\n> de7d462cfafcbcea12666e772db5c9c2 ./chemical/residue_type_sets/fa_standard/patches/DimethylatedProteinCterm.txt\r\n17811a17890,17899\r\n> 2930cf006d6876f3fed5c6a0616e78a0 ./chemical/residue_type_sets/fa_standard/patches/MethylatedProteinCterm.txt\r\n> 85eff15e44054bb049c755304e801327 ./chemical/residue_type_sets/fa_standard/patches/N_acetylated.txt\r\n> f836126e2bf30274a2a7584124586a8c ./chemical/residue_type_sets/fa_standard/patches/N_formylated.txt\r\n> 43a8f7b83b6c5605e9278d5c83cd0088 ./chemical/residue_type_sets/fa_standard/patches/N_methylation.txt\r\n> bac9fc639ef0b2e303e78aec734996b9 ./chemical/residue_type_sets/fa_standard/patches/Nterm2_Oxobutrylation.txt\r\n> b3c2d332a81068b7285fab02d5fbf021 ./chemical/residue_type_sets/fa_standard/patches/NtermCtermDipeptoid.txt\r\n> 2f450896c3ff78702dcea49b7da662d3 ./chemical/residue_type_sets/fa_standard/patches/NtermPeptoidFull.txt\r\n> 3b93d9b05e1da4c14f90596baf4fe9d3 ./chemical/residue_type_sets/fa_standard/patches/NtermProteinFull.txt\r\n> 3ed8fbd76e1b0cabe04f0cb35ad1b5dc ./chemical/residue_type_sets/fa_standard/patches/NtermProteinMethylated.txt\r\n> 466d886c3f5271f906ed1f22c4a2ef86 ./chemical/residue_type_sets/fa_standard/patches/NtermTruncation.txt\r\n17816,17818d17903\r\n< 3e20475ce859a6c3a7c69c4f3f104d75 ./chemical/residue_type_sets/fa_standard/patches/nucleic/dna/LowerDNA.txt\r\n< 6ff0ad53ec262dcde7bfb22d80d1d4b6 ./chemical/residue_type_sets/fa_standard/patches/nucleic/dna/UpperDNA.txt\r\n< 1f9532b3c3a808f57eb916b81f066154 ./chemical/residue_type_sets/fa_standard/patches/nucleic/dna/VirtualDNAPhosphate.txt\r\n17820a17906\r\n> 3e20475ce859a6c3a7c69c4f3f104d75 ./chemical/residue_type_sets/fa_standard/patches/nucleic/dna/LowerDNA.txt\r\n17821a17908,17909\r\n> 6ff0ad53ec262dcde7bfb22d80d1d4b6 ./chemical/residue_type_sets/fa_standard/patches/nucleic/dna/UpperDNA.txt\r\n> 1f9532b3c3a808f57eb916b81f066154 ./chemical/residue_type_sets/fa_standard/patches/nucleic/dna/VirtualDNAPhosphate.txt\r\n17839d17926\r\n< 39ff7eecdaf3da00769593252cae3485 ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/L_RNA.txt\r\n17841a17929\r\n> 39ff7eecdaf3da00769593252cae3485 ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/L_RNA.txt\r\n17845a17934,17935\r\n> a253003e9d3de5855dc88f27cf990bc5 ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/rna_cutpoint_lower.txt\r\n> cd568d08b54dfc0069d2d08a3cdca7bb ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/rna_cutpoint_upper.txt\r\n17848,17849d17937\r\n< c808b7f012d60541e61717f76e44711b ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/VirtualBase.txt\r\n< b2e16b85718e681c64fe81f223447291 ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/VirtualBaseHeavyAtom.txt\r\n17850a17939,17940\r\n> b2e16b85718e681c64fe81f223447291 ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/VirtualBaseHeavyAtom.txt\r\n> c808b7f012d60541e61717f76e44711b ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/VirtualBase.txt\r\n17853,17854d17942\r\n< 6ca81713bd8dce9f2445346e387ab031 ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/Virtual_RNA_Residue.txt\r\n< bd375384b53911262e0479660df0b8a0 ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/Virtual_RNA_Residue_Exclude_Phosphate.txt\r\n17856,17857c17944,17945\r\n< a253003e9d3de5855dc88f27cf990bc5 ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/rna_cutpoint_lower.txt\r\n< cd568d08b54dfc0069d2d08a3cdca7bb ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/rna_cutpoint_upper.txt\r\n---\r\n> bd375384b53911262e0479660df0b8a0 ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/Virtual_RNA_Residue_Exclude_Phosphate.txt\r\n> 6ca81713bd8dce9f2445346e387ab031 ./chemical/residue_type_sets/fa_standard/patches/nucleic/rna/Virtual_RNA_Residue.txt\r\n17863a17952,17956\r\n> 2f605af98240a574c889973008eee0eb ./chemical/residue_type_sets/fa_standard/patches/PtermProteinFull.txt\r\n> 94337e89066eb2b1c319c8be9533e555 ./chemical/residue_type_sets/fa_standard/patches/ReplsBB.txt\r\n> be62dfcd5b902238e7c6e98eeef65016 ./chemical/residue_type_sets/fa_standard/patches/RepulsiveOnly_fa.txt\r\n> 6b05493fcaeb9c88ee2c9a55b2ef0142 ./chemical/residue_type_sets/fa_standard/patches/RPEPTOID.txt\r\n> e4357e6786d5c2eb944176549908e9c2 ./chemical/residue_type_sets/fa_standard/patches/SC_Fragment.txt\r\n17864a17958,17960\r\n> 27309023fcd78c81f5db444eb8c147ed ./chemical/residue_type_sets/fa_standard/patches/ShoveBB.txt\r\n> f5aef0106cd04a3493571d8ab2e1148e ./chemical/residue_type_sets/fa_standard/patches/SidechainConjugation.txt\r\n> 8c4acc378986d6613aabc242773c22ad ./chemical/residue_type_sets/fa_standard/patches/SpecialRotamer.txt\r\n17883a17980,17981\r\n> 4e3c74aa7473f19472207aa35d53b2ad ./chemical/residue_type_sets/fa_standard/patches.txt\r\n> bdb4105729e29322a8820f6695c4090a ./chemical/residue_type_sets/fa_standard/patches.txt.slim\r\n17886a17985,17988\r\n> 45c15f384a8a50fe71ac80adbbcc3c5e ./chemical/residue_type_sets/fa_standard/patches/VirtualBB.txt\r\n> 13986000048ac1bd1524cd939b6b3a63 ./chemical/residue_type_sets/fa_standard/patches/VirtualNterm.txt\r\n> 2ea3eebe0b4a46ecd2c2bd449f3c146d ./chemical/residue_type_sets/fa_standard/patches/VirtualProteinSideChain.txt\r\n> 54446d1beb208506bf4ef0278370fc44 ./chemical/residue_type_sets/fa_standard/patches/VirtualResidue.txt\r\n17888,17889c17990,18312\r\n< 617e60b3f0d6483e517e6bffbc4ae989 ./chemical/residue_type_sets/fa_standard/residue_types.txt\r\n< 9226c98da695f0afb3760dcc56b1d563 ./chemical/residue_type_sets/fa_standard/residue_types.txt.slim\r\n---\r\n> 89ad5f6e4167a1ad46b75d769275c235 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/exclude_pdb_component_list.txt\r\n> af51a8baab6e7b35c882b376b6fa6fd4 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/merge_residue_behaviors.txt\r\n> e681afa0dbacd721b8dc0c1b8d2176a7 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches/aromatic_bromination.txt\r\n> 42840391017b658afe61f3d56dcf3be6 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches/aromatic_chlorination.txt\r\n> 0cf42ca0b5932e12798c749b5073b15a ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches/aromatic_ethylation.txt\r\n> a7d288d034470e58a78307fcb86b4852 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches/aromatic_fluorination.txt\r\n> f6b712f723ed3f1a75160115b05da930 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches/aromatic_hydroxylation.txt\r\n> 9bf608eeccfbf683f799f97137384fca ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches/aromatic_iodination.txt\r\n> e00bc5bad40e83211a9aefc2328a236a ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches/aromatic_methoxylation.txt\r\n> 26438c1ab876eb866593cb589b41a1a6 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches/aromatic_methylation.txt\r\n> 83f6e77a3c5edd20e15414782c9837ec ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches/connect.txt\r\n> 20a4ff3fedd87b270d8a0a1c25eecf49 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches/metal_connect.txt\r\n> 8f0c3af8c839cb78a82cbc3836f5b1c5 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/metapatches.txt\r\n> aa4b88a4b2cf6a35d30ff5ca37b9434a ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/AcetylatedProteinNterm.txt\r\n> 04b6e731727e44b7a83f9e39e4ad3a8a ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/2-amination.txt\r\n> 53346d6171a483ecd6d68ccec71b7e17 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/2-branch.txt\r\n> 3dc1663738124673f73c12f4261f840f ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/3-amination.txt\r\n> 89f8031e01e133bbb06adbb0e0876407 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/3-branch.txt\r\n> 96c201f6d8462ef15f0b843cea4dd2a5 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/3-methylation.txt\r\n> 7b03ba2c9b3d574cb2b189f7a0ad2d34 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/patches/carbohydrates/5-acetylation.txt\r\n> 2af3dd9892297077c21b0cad6c2980f5 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7397d145ae53544d921f774ac1fc21ad ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/peptoids/01C.params\r\n< 5c3f31a5dcfc5ad7b400d6ae4ea0c836 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/peptoids/02C.params\r\n< 079898a60bb82113ba62edfdd4ba03ac ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/peptoids/03C.params\r\n< 51a35c2aef7d671b95b58a317e180692 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/protonation_states/ASP_P1.params\r\n< d949ae81e23f6a4de6a2d5c7c2d1b713 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/protonation_states/ASP_P2.params\r\n< 4ab4bacceefa2970bfac8b0f07d6100e ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/protonation_states/GLU_P1.params\r\n< 194a754ef2a1d2e05c959b4a964a95cd ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/protonation_states/GLU_P2.params\r\n< bc200c80fd08c0abf9cdb6ac915f3bad ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/protonation_states/HIS_P.params\r\n< 528c0a75d8f4841402c332f8e32e72f3 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/protonation_states/LYS_D.params\r\n< 1aca428f5a6548627fd4ac3ace9f0fd1 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/protonation_states/TYR_D.params\r\n< e221a0da69523448f6a2620ca1353ba4 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/ptm-caa/PTR.params\r\n< 3056d8272f7901ee0a3f93f2082fd257 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/ptm-caa/SEP.params\r\n< 52db4b0046ede694a4667cc1fea8d1f4 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/ptm-caa/TPO.params\r\n< ee134dd03c89e2592eec706ad87f5eee ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/rosetta_specific/GB_AA_PLACEHOLDER.params\r\n< 0a02f2045a7e81696a54bfb9b8a780bc ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/rosetta_specific/SUCK.params\r\n< f676d7adfcda2e2a7153abf00aabbf1b ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/rosetta_specific/VRT.params\r\n< 5724511a34f0e93af5b007dcfbf24cbf ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/rosetta_specific/VRT1.params\r\n< 85667ff04aeda6c724497d2aef6ea733 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/sidechain_conjugation/CYX.params\r\n< 5f9ea9f4efff8b5dcf5d670dab5de03f ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/sidechain_conjugation/LYX.params\r\n< 6987abb0c0dec920acd09d023ee22d1b ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/spin_labels/R1A.params\r\n< c88372fa083b7629fdfec51a4b00a8bd ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/spin_labels/R1A_rotamers_nonclashing_moe_saved.pdb\r\n< b5181af4da9329f2124aa8996d24e2ff ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/staple/08A.params\r\n< 438574548e74c605104d16f2b6e730c2 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/staple/08B.params\r\n< 40e9a4c3cc0605b4a1809491150cb0c9 ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/water/TP3.params\r\n< ca5361ba09173c67679e58818546d16c ./chemical/residue_type_sets/fa_standard_pre_talaris2013/residue_types/water/TP5.params\r\n19864d19863\r\n< 9e04453e4027768053244d5821649983 ./chemical/residue_type_sets/fa_standard_talaris/metapatches.txt\r\n19877,19905c19876\r\n< 2b3022d9212cac53c7b2f83932767bab ./chemical/residue_type_sets/fa_standard_talaris/patches.txt\r\n< bdb4105729e29322a8820f6695c4090a ./chemical/residue_type_sets/fa_standard_talaris/patches.txt.slim\r\n< f5ba5ff33625b0b50c34a93df02c9c53 ./chemical/residue_type_sets/fa_standard_talaris/patches/AcetylatedPeptoidNterm.txt\r\n< 06712e6fe028ab79b2dad71b78acbee0 ./chemical/residue_type_sets/fa_standard_talaris/patches/AcetylatedProteinNterm.txt\r\n< b679c0883425fdbdd114a22aa2e87d0d ./chemical/residue_type_sets/fa_standard_talaris/patches/C_methylamidated.txt\r\n< da934057d3d71ee954afac5045ed4566 ./chemical/residue_type_sets/fa_standard_talaris/patches/CtermPeptoidFull.txt\r\n< 458f08a41ee90b61e372b8c842faf54e ./chemical/residue_type_sets/fa_standard_talaris/patches/CtermProteinFull.txt\r\n< 4ee956873d4090440195c01d36452b33 ./chemical/residue_type_sets/fa_standard_talaris/patches/CtermTruncation.txt\r\n< 43f63bd63e23a77c048c912b217996f4 ./chemical/residue_type_sets/fa_standard_talaris/patches/Cterm_amidation.txt\r\n< aa08341bf9528937a60fad1dfbdc89b2 ./chemical/residue_type_sets/fa_standard_talaris/patches/D_AA.txt\r\n< 38265eb53ec925f79c6bb90df2582c7e ./chemical/residue_type_sets/fa_standard_talaris/patches/MethylatedProteinCterm.txt\r\n< 8299ba30688568c8022db4e6e203188b ./chemical/residue_type_sets/fa_standard_talaris/patches/N_acetylated.txt\r\n< 38a5f890d5b3729edc0e311e16fe29a3 ./chemical/residue_type_sets/fa_standard_talaris/patches/N_formylated.txt\r\n< a40a2d4e870511981f48fd69c99809f0 ./chemical/residue_type_sets/fa_standard_talaris/patches/N_methylation.txt\r\n< c62f2b716fb131adf4cf73b37c3dc85f ./chemical/residue_type_sets/fa_standard_talaris/patches/NtermCtermDipeptoid.txt\r\n< 2f450896c3ff78702dcea49b7da662d3 ./chemical/residue_type_sets/fa_standard_talaris/patches/NtermPeptoidFull.txt\r\n< 98e5c045fd16fe04f684242a274b7f0c ./chemical/residue_type_sets/fa_standard_talaris/patches/NtermProteinFull.txt\r\n< 7a9a4412e75698ea34239e60b2b7daa9 ./chemical/residue_type_sets/fa_standard_talaris/patches/NtermProteinMethylated.txt\r\n< 36d63d849e5c1d2e63d60205976ed229 ./chemical/residue_type_sets/fa_standard_talaris/patches/NtermTruncation.txt\r\n< eaec8100756a93d46a9a4c94aa665c98 ./chemical/residue_type_sets/fa_standard_talaris/patches/PtermProteinFull.txt\r\n< 8bda1012452d993cc21955fbfee8b862 ./chemical/residue_type_sets/fa_standard_talaris/patches/ReplsBB.txt\r\n< be62dfcd5b902238e7c6e98eeef65016 ./chemical/residue_type_sets/fa_standard_talaris/patches/RepulsiveOnly_fa.txt\r\n< e4357e6786d5c2eb944176549908e9c2 ./chemical/residue_type_sets/fa_standard_talaris/patches/SC_Fragment.txt\r\n< 4bb35d152b382832ef9af3431b4ea8b2 ./chemical/residue_type_sets/fa_standard_talaris/patches/ShoveBB.txt\r\n< 8c4acc378986d6613aabc242773c22ad ./chemical/residue_type_sets/fa_standard_talaris/patches/SpecialRotamer.txt\r\n< 4608ec71a01a0bd1ec5de51a8a4d9d70 ./chemical/residue_type_sets/fa_standard_talaris/patches/VirtualBB.txt\r\n< e8428f9651f5ea2c2d552b3ac3d8effc ./chemical/residue_type_sets/fa_standard_talaris/patches/VirtualNterm.txt\r\n< 9c0f699d7254009afd3becf0bd0d161b ./chemical/residue_type_sets/fa_standard_talaris/patches/VirtualProteinResidue.txt\r\n< ad378c0b59e844ee8b722cae36d10aca ./chemical/residue_type_sets/fa_standard_talaris/patches/VirtualProteinSideChain.txt\r\n---\r\n> 9e04453e4027768053244d5821649983 ./chemical/residue_type_sets/fa_standard_talaris/metapatches.txt\r\n19907a19879,19882\r\n> f5ba5ff33625b0b50c34a93df02c9c53 ./chemical/residue_type_sets/fa_standard_talaris/patches/AcetylatedPeptoidNterm.txt\r\n> 06712e6fe028ab79b2dad71b78acbee0 ./chemical/residue_type_sets/fa_standard_talaris/patches/AcetylatedProteinNterm.txt\r\n> 37be50671955a28315a792deab9097b6 ./chemical/residue_type_sets/fa_standard_talaris/patches/branching/aryl-C-conjugated.txt\r\n> d39c0db1d2e5d73840d41997f1d8fd4d ./chemical/residue_type_sets/fa_standard_talaris/patches/branching/aryl-O-conjugated.txt\r\n19911,19913d19885\r\n< 1f3dbe99a9a0bf1dd81f9602c1a75957 ./chemical/residue_type_sets/fa_standard_talaris/patches/branching/S-linked_conjugation.txt\r\n< 37be50671955a28315a792deab9097b6 ./chemical/residue_type_sets/fa_standard_talaris/patches/branching/aryl-C-conjugated.txt\r\n< d39c0db1d2e5d73840d41997f1d8fd4d ./chemical/residue_type_sets/fa_standard_talaris/patches/branching/aryl-O-conjugated.txt\r\n19916a19889\r\n> 1f3dbe99a9a0bf1dd81f9602c1a75957 ./chemical/residue_type_sets/fa_standard_talaris/patches/branching/S-linked_conjugation.txt\r\n19929a19903,19905\r\n> d2e93dd0fc682d2c3248dcd55a6782c0 ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/cutpoint_lower.txt\r\n> 5715cbe31fe27c5be58b10ac94427a7e ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/cutpoint_upper.txt\r\n> 33869a37d40d2ead658ee35d25e6be20 ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/lower_terminus.txt\r\n19931,19933d19906\r\n< 9c9fa21f3567410927ef2251a4bb577b ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/N-R-3'-hydroxybutyryl-3-amination.txt\r\n< 67f6ddf62b9e03c6502265edf71120d9 ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/N-acetyl-2-amination.txt\r\n< a621c7b470442e87074f8f6b420cdda7 ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/N-linked_glycosylation.txt\r\n19937,19939c19910,19912\r\n< d2e93dd0fc682d2c3248dcd55a6782c0 ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/cutpoint_lower.txt\r\n< 5715cbe31fe27c5be58b10ac94427a7e ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/cutpoint_upper.txt\r\n< 33869a37d40d2ead658ee35d25e6be20 ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/lower_terminus.txt\r\n---\r\n> 67f6ddf62b9e03c6502265edf71120d9 ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/N-acetyl-2-amination.txt\r\n> a621c7b470442e87074f8f6b420cdda7 ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/N-linked_glycosylation.txt\r\n> 9c9fa21f3567410927ef2251a4bb577b ./chemical/residue_type_sets/fa_standard_talaris/patches/carbohydrates/N-R-3'-hydroxybutyryl-3-amination.txt\r\n19941a19915,19919\r\n> b679c0883425fdbdd114a22aa2e87d0d ./chemical/residue_type_sets/fa_standard_talaris/patches/C_methylamidated.txt\r\n> 43f63bd63e23a77c048c912b217996f4 ./chemical/residue_type_sets/fa_standard_talaris/patches/Cterm_amidation.txt\r\n> da934057d3d71ee954afac5045ed4566 ./chemical/residue_type_sets/fa_standard_talaris/patches/CtermPeptoidFull.txt\r\n> 458f08a41ee90b61e372b8c842faf54e ./chemical/residue_type_sets/fa_standard_talaris/patches/CtermProteinFull.txt\r\n> 4ee956873d4090440195c01d36452b33 ./chemical/residue_type_sets/fa_standard_talaris/patches/CtermTruncation.txt\r\n19942a19921\r\n> aa08341bf9528937a60fad1dfbdc89b2 ./chemical/residue_type_sets/fa_standard_talaris/patches/D_AA.txt\r\n19951a19931,19941\r\n> 38265eb53ec925f79c6bb90df2582c7e ./chemical/residue_type_sets/fa_standard_talaris/patches/MethylatedProteinCterm.txt\r\n> 8299ba30688568c8022db4e6e203188b ./chemical/residue_type_sets/fa_standard_talaris/patches/N_acetylated.txt\r\n> 38a5f890d5b3729edc0e311e16fe29a3 ./chemical/residue_type_sets/fa_standard_talaris/patches/N_formylated.txt\r\n> a40a2d4e870511981f48fd69c99809f0 ./chemical/residue_type_sets/fa_standard_talaris/patches/N_methylation.txt\r\n> c62f2b716fb131adf4cf73b37c3dc85f ./chemical/residue_type_sets/fa_standard_talaris/patches/NtermCtermDipeptoid.txt\r\n> 2f450896c3ff78702dcea49b7da662d3 ./chemical/residue_type_sets/fa_standard_talaris/patches/NtermPeptoidFull.txt\r\n> 98e5c045fd16fe04f684242a274b7f0c ./chemical/residue_type_sets/fa_standard_talaris/patches/NtermProteinFull.txt\r\n> 7a9a4412e75698ea34239e60b2b7daa9 ./chemical/residue_type_sets/fa_standard_talaris/patches/NtermProteinMethylated.txt\r\n> 36d63d849e5c1d2e63d60205976ed229 ./chemical/residue_type_sets/fa_standard_talaris/patches/NtermTruncation.txt\r\n> 50e94be80aba8a6a8278a62eaa368f87 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/dna/dna_cutpoint_lower.txt\r\n> bfa09fb1e587f229ae48fa278da76436 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/dna/dna_cutpoint_upper.txt\r\n19955,19956d19944\r\n< 50e94be80aba8a6a8278a62eaa368f87 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/dna/dna_cutpoint_lower.txt\r\n< bfa09fb1e587f229ae48fa278da76436 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/dna/dna_cutpoint_upper.txt\r\n19971d19958\r\n< 39ff7eecdaf3da00769593252cae3485 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/L_RNA.txt\r\n19973a19961\r\n> 39ff7eecdaf3da00769593252cae3485 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/L_RNA.txt\r\n19976a19965,19966\r\n> 459681f45b3776b837f25466e076c7fa ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/rna_cutpoint_lower.txt\r\n> 0a881c8f350e74d46b6844f6a7ec8ad7 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/rna_cutpoint_upper.txt\r\n19979,19980d19968\r\n< e16f71531475cc3c019d7772f56d1e91 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/VirtualBase.txt\r\n< b2e16b85718e681c64fe81f223447291 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/VirtualBaseHeavyAtom.txt\r\n19981a19970,19971\r\n> b2e16b85718e681c64fe81f223447291 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/VirtualBaseHeavyAtom.txt\r\n> e16f71531475cc3c019d7772f56d1e91 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/VirtualBase.txt\r\n19984,19985d19973\r\n< 6ca81713bd8dce9f2445346e387ab031 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/Virtual_RNA_Residue.txt\r\n< bd375384b53911262e0479660df0b8a0 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/Virtual_RNA_Residue_Exclude_Phosphate.txt\r\n19987,19988c19975,19976\r\n< 459681f45b3776b837f25466e076c7fa ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/rna_cutpoint_lower.txt\r\n< 0a881c8f350e74d46b6844f6a7ec8ad7 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/rna_cutpoint_upper.txt\r\n---\r\n> bd375384b53911262e0479660df0b8a0 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/Virtual_RNA_Residue_Exclude_Phosphate.txt\r\n> 6ca81713bd8dce9f2445346e387ab031 ./chemical/residue_type_sets/fa_standard_talaris/patches/nucleic/rna/Virtual_RNA_Residue.txt\r\n19994a19983,19986\r\n> eaec8100756a93d46a9a4c94aa665c98 ./chemical/residue_type_sets/fa_standard_talaris/patches/PtermProteinFull.txt\r\n> 8bda1012452d993cc21955fbfee8b862 ./chemical/residue_type_sets/fa_standard_talaris/patches/ReplsBB.txt\r\n> be62dfcd5b902238e7c6e98eeef65016 ./chemical/residue_type_sets/fa_standard_talaris/patches/RepulsiveOnly_fa.txt\r\n> e4357e6786d5c2eb944176549908e9c2 ./chemical/residue_type_sets/fa_standard_talaris/patches/SC_Fragment.txt\r\n19995a19988,19989\r\n> 4bb35d152b382832ef9af3431b4ea8b2 ./chemical/residue_type_sets/fa_standard_talaris/patches/ShoveBB.txt\r\n> 8c4acc378986d6613aabc242773c22ad ./chemical/residue_type_sets/fa_standard_talaris/patches/SpecialRotamer.txt\r\n20000a19995,19996\r\n> 2b3022d9212cac53c7b2f83932767bab ./chemical/residue_type_sets/fa_standard_talaris/patches.txt\r\n> bdb4105729e29322a8820f6695c4090a ./chemical/residue_type_sets/fa_standard_talaris/patches.txt.slim\r\n20003a20000,20003\r\n> 4608ec71a01a0bd1ec5de51a8a4d9d70 ./chemical/residue_type_sets/fa_standard_talaris/patches/VirtualBB.txt\r\n> e8428f9651f5ea2c2d552b3ac3d8effc ./chemical/residue_type_sets/fa_standard_talaris/patches/VirtualNterm.txt\r\n> 9c0f699d7254009afd3becf0bd0d161b ./chemical/residue_type_sets/fa_standard_talaris/patches/VirtualProteinResidue.txt\r\n> ad378c0b59e844ee8b722cae36d10aca ./chemical/residue_type_sets/fa_standard_talaris/patches/VirtualProteinSideChain.txt\r\n20005,20006d20004\r\n< 98bf200ed0d02fbfef24a72bdb315ebc ./chemical/residue_type_sets/fa_standard_talaris/residue_types.txt\r\n< 9226c98da695f0afb3760dcc56b1d563 ./chemical/residue_type_sets/fa_standard_talaris/residue_types.txt.slim\r\n20048a20047\r\n> ae1a10f80be32f44a8dd6dcb585727f9 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/carbohydrates/to4-alpha-Daup.params\r\n20053d20051\r\n< ae1a10f80be32f44a8dd6dcb585727f9 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/carbohydrates/to4-alpha-Daup.params\r\n20074d20071\r\n< d44e00d9b100b1cc5b75de11e01e535c ./chemical/residue_type_sets/fa_standard_talaris/residue_types/coenzymes/README.txt\r\n20076a20074\r\n> d44e00d9b100b1cc5b75de11e01e535c ./chemical/residue_type_sets/fa_standard_talaris/residue_types/coenzymes/README.txt\r\n20123d20120\r\n< 4e73ad505d17110dc62a5ff6468b3e74 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-caa/HIS.params\r\n20124a20122\r\n> 4e73ad505d17110dc62a5ff6468b3e74 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-caa/HIS.params\r\n20135a20134,20137\r\n> a53a292f7c3b35a92bf7bc804619a9ad ./chemical/residue_type_sets/fa_standard_talaris/residue_types/lipids/linoleate.params\r\n> 59f6dcf9fde344e750671a62337ec59b ./chemical/residue_type_sets/fa_standard_talaris/residue_types/lipids/ONonOMe.params\r\n> 54bcc5f2f47b2c549381c34483ba06f0 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/lipids/README.txt\r\n> b1a9716910a98037a23030054dc5e4f2 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/lipids/sphingosine.params\r\n20139a20142\r\n> e3dc5ff09ed9968d2fea072fa2256fbc ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/2.4-dimethyl-phenylalanine.params\r\n20146d20148\r\n< 30dd80d8f424a25d09d73e8504c4352a ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/2-amino-octanoic_acid.params\r\n20147a20150\r\n> 30dd80d8f424a25d09d73e8504c4352a ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/2-amino-octanoic_acid.params\r\n20152,20153d20154\r\n< e3dc5ff09ed9968d2fea072fa2256fbc ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/2.4-dimethyl-phenylalanine.params\r\n< d4b7c0960cca1330cbd221ed7ad47fa8 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/3-amino-tyrosine.params\r\n20154a20156\r\n> d4b7c0960cca1330cbd221ed7ad47fa8 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/3-amino-tyrosine.params\r\n20160a20163,20166\r\n> 562ff96aa719c1f2f2ea62352e46ea85 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/4.5-dehydro-leucine.params\r\n> e6cfa8975eeb6f1b42ce1f020fcb0899 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/4.5-dehydro-lysine.params\r\n> a78067096ef79338ac300d3eef7b39d4 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/4.5-dihydroxy-isoleucine.params\r\n> c45a3247e005c584db5622b927e23e4e ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/4-aminomethyl-phenylalanine.params\r\n20164d20169\r\n< c45a3247e005c584db5622b927e23e4e ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/4-aminomethyl-phenylalanine.params\r\n20177,20179d20181\r\n< 562ff96aa719c1f2f2ea62352e46ea85 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/4.5-dehydro-leucine.params\r\n< e6cfa8975eeb6f1b42ce1f020fcb0899 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/4.5-dehydro-lysine.params\r\n< a78067096ef79338ac300d3eef7b39d4 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/4.5-dihydroxy-isoleucine.params\r\n20194,20214d20195\r\n< 5ea9bfe4d3f5aa6e533d209b6a14709c ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/APA.params\r\n< 728d92bb067b125c829a00d223e3da7a ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/BCS.params\r\n< ec38398c32a72e96f811cf92be2e6121 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/BZP.params\r\n< 0f93d3a7652c11d699eb24564b5c0798 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/HIP.params\r\n< a57fd4929ecb323a467d3812f585ca00 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/HLU.params\r\n< f43e9d6cffb31368ad994ae9dc384c05 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/HP2.params\r\n< fc69d9816ca5d82aa295c44476b6a5da ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/HPR.params\r\n< 9cdc0c4b993ed5cf66445a714e67f23f ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/HTY.params\r\n< 1b7a88008dcb1241017bcb89eaa05852 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/MAL.params\r\n< 2a079a47aac025e48e951babad9b4cec ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/MPA.params\r\n< 1ae7f46be8904a3122db8141bca00fbc ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/MTP.params\r\n< 8e8f6b7104da8363f636ae074ca2d803 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/NLU.params\r\n< c51de7e57ab70c5b3a70439eae923215 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/NVL.params\r\n< 8e7e0f188cb6dba92a5571f9608f66eb ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/S56.params\r\n< 86a9e0e0b648ee44c427888bc9ef77cc ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/SAL.params\r\n< 67fb317002603129d63a01b57ffac2eb ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/TES.params\r\n< 6be13b455c21cf77e05a49c723ba7a70 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/V01.params\r\n< 2187a1fb137a61d3a665b73b0d20dbf2 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/V02.params\r\n< 14d55955b1d30ecaf8751e95b41cb9f0 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/V03.params\r\n< 1265c23cee287ffe49201c5c29cc1c24 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/V04.params\r\n< e6deb5950d09934ef79ace18225b0575 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/YPN.params\r\n20217d20197\r\n< 5a681851af3a0925670ca928e22c0c79 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/alpha-amino-glycine.params\r\n20218a20199,20201\r\n> 5a681851af3a0925670ca928e22c0c79 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/alpha-amino-glycine.params\r\n> 77c76882c2801660ff814970bbe0e0f7 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/alpha.beta-diaminopropionic_acid.params\r\n> 158e4e44f65581d3b0f93da5ea4b7597 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/alpha.gama-diaminobutyric_acid.params\r\n20227,20228d20209\r\n< 77c76882c2801660ff814970bbe0e0f7 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/alpha.beta-diaminopropionic_acid.params\r\n< 158e4e44f65581d3b0f93da5ea4b7597 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/alpha.gama-diaminobutyric_acid.params\r\n20229a20211,20212\r\n> 5ea9bfe4d3f5aa6e533d209b6a14709c ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/APA.params\r\n> 728d92bb067b125c829a00d223e3da7a ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/BCS.params\r\n20232a20216\r\n> 1f2c951a052c655dbcd2a97a319ef7b5 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/beta.beta-diphenyl-alanine.params\r\n20239c20223\r\n< 1f2c951a052c655dbcd2a97a319ef7b5 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/beta.beta-diphenyl-alanine.params\r\n---\r\n> ec38398c32a72e96f811cf92be2e6121 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/BZP.params\r\n20246a20231,20232\r\n> 0f93d3a7652c11d699eb24564b5c0798 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/HIP.params\r\n> a57fd4929ecb323a467d3812f585ca00 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/HLU.params\r\n20249a20236,20241\r\n> f43e9d6cffb31368ad994ae9dc384c05 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/HP2.params\r\n> fc69d9816ca5d82aa295c44476b6a5da ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/HPR.params\r\n> 9cdc0c4b993ed5cf66445a714e67f23f ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/HTY.params\r\n> 1b7a88008dcb1241017bcb89eaa05852 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/MAL.params\r\n> 2a079a47aac025e48e951babad9b4cec ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/MPA.params\r\n> 1ae7f46be8904a3122db8141bca00fbc ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/MTP.params\r\n20250a20243,20244\r\n> 8e8f6b7104da8363f636ae074ca2d803 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/NLU.params\r\n> c51de7e57ab70c5b3a70439eae923215 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/NVL.params\r\n20253d20246\r\n< b0dc4be8d6da4f2c6b8e80a7da0433cc ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/phenyl-serine.params\r\n20254a20248,20250\r\n> b0dc4be8d6da4f2c6b8e80a7da0433cc ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/phenyl-serine.params\r\n> 8e7e0f188cb6dba92a5571f9608f66eb ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/S56.params\r\n> 86a9e0e0b648ee44c427888bc9ef77cc ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/SAL.params\r\n20257a20254\r\n> 67fb317002603129d63a01b57ffac2eb ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/TES.params\r\n20259d20255\r\n< e22ffbe78704a1de725eadccbdfc37e4 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/trifluoro-leucine.params\r\n20261,20264c20257,20262\r\n< 59f6dcf9fde344e750671a62337ec59b ./chemical/residue_type_sets/fa_standard_talaris/residue_types/lipids/ONonOMe.params\r\n< 54bcc5f2f47b2c549381c34483ba06f0 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/lipids/README.txt\r\n< a53a292f7c3b35a92bf7bc804619a9ad ./chemical/residue_type_sets/fa_standard_talaris/residue_types/lipids/linoleate.params\r\n< b1a9716910a98037a23030054dc5e4f2 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/lipids/sphingosine.params\r\n---\r\n> e22ffbe78704a1de725eadccbdfc37e4 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/trifluoro-leucine.params\r\n> 6be13b455c21cf77e05a49c723ba7a70 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/V01.params\r\n> 2187a1fb137a61d3a665b73b0d20dbf2 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/V02.params\r\n> 14d55955b1d30ecaf8751e95b41cb9f0 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/V03.params\r\n> 1265c23cee287ffe49201c5c29cc1c24 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/V04.params\r\n> e6deb5950d09934ef79ace18225b0575 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/l-ncaa/YPN.params\r\n20273d20270\r\n< 2c9a3082c06f1d3db33644cc5a46b9e5 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/metal_ions/FE.params\r\n20274a20272\r\n> 2c9a3082c06f1d3db33644cc5a46b9e5 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/metal_ions/FE.params\r\n20284d20281\r\n< 3b9383bb4e7d1c2f505975dd14397bbc ./chemical/residue_type_sets/fa_standard_talaris/residue_types/mineral_surface/HYD.params\r\n20285a20283\r\n> 3b9383bb4e7d1c2f505975dd14397bbc ./chemical/residue_type_sets/fa_standard_talaris/residue_types/mineral_surface/HYD.params\r\n20287a20286\r\n> d79829acd471b2e4d3c315377c36778c ./chemical/residue_type_sets/fa_standard_talaris/residue_types/mineral_surface/Oice.params\r\n20290d20288\r\n< d79829acd471b2e4d3c315377c36778c ./chemical/residue_type_sets/fa_standard_talaris/residue_types/mineral_surface/Oice.params\r\n20387,20394d20384\r\n< d8153f3f5a91b95ed336eb871fceb45f ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RAD_n.params\r\n< 201d365bfff212b69e7354b692378c47 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RAD_s.params\r\n< 39d7a286521b987fccc4ea44ec825ea3 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RCY_n.params\r\n< 3e27b084309d8b75cab99329409d1b00 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RCY_s.params\r\n< 1ebf80dd8135c12bb0787fcbc5552a7b ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RGU_n.params\r\n< 1617c4325d11a081a6a37e2937dda12c ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RGU_s.params\r\n< 6b861c2b733222879ce99d38817b98bd ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/URA_n.params\r\n< 4d7dfd7d6ba919a5dd93dd9805212b49 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/URA_s.params\r\n20402a20393,20400\r\n> d8153f3f5a91b95ed336eb871fceb45f ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RAD_n.params\r\n> 201d365bfff212b69e7354b692378c47 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RAD_s.params\r\n> 39d7a286521b987fccc4ea44ec825ea3 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RCY_n.params\r\n> 3e27b084309d8b75cab99329409d1b00 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RCY_s.params\r\n> 1ebf80dd8135c12bb0787fcbc5552a7b ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RGU_n.params\r\n> 1617c4325d11a081a6a37e2937dda12c ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/RGU_s.params\r\n> 6b861c2b733222879ce99d38817b98bd ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/URA_n.params\r\n> 4d7dfd7d6ba919a5dd93dd9805212b49 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/nucleic/rna_phenix/URA_s.params\r\n20530d20527\r\n< da4bed1aeba3a6b825cce4148d9b4260 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/rosetta_specific/VRT.params\r\n20532a20530\r\n> da4bed1aeba3a6b825cce4148d9b4260 ./chemical/residue_type_sets/fa_standard_talaris/residue_types/rosetta_specific/VRT.params\r\n20555a20554,20555\r\n> 98bf200ed0d02fbfef24a72bdb315ebc ./chemical/residue_type_sets/fa_standard_talaris/residue_types.txt\r\n> 9226c98da695f0afb3760dcc56b1d563 ./chemical/residue_type_sets/fa_standard_talaris/residue_types.txt.slim\r\n20564d20563\r\n< 393bef40eb57137e1750b4480417eb15 ./chemical/ring_conformer_sets/README.txt\r\n20570a20570\r\n> 393bef40eb57137e1750b4480417eb15 ./chemical/ring_conformer_sets/README.txt\r\n20574,20576d20573\r\n< 2994c41d9e2bdcc86e2b1d9e3f4ed155 ./external/SPARTA+/tab/C.level1.WI.tab\r\n< 14d2d64a86e9d4269dffa9e9254cdea0 ./external/SPARTA+/tab/C.level1.WL1.tab\r\n< f54b00b89fa528c7dbfcb1264bc83935 ./external/SPARTA+/tab/C.level1.WL2.tab\r\n20583,20591c20580,20582\r\n< 951050619a491259e1778bba2517a62c ./external/SPARTA+/tab/HA.level1.WI.tab\r\n< 038928cd40f111d20c2ddf126a170b42 ./external/SPARTA+/tab/HA.level1.WL1.tab\r\n< 2860ba9b9d2ed2b37e9f76e77e1f4053 ./external/SPARTA+/tab/HA.level1.WL2.tab\r\n< 06539974d4e9d50e5ddcc06961f083f5 ./external/SPARTA+/tab/HN.level1.WI.tab\r\n< d12b9e8788e58e458e619f21e15efc83 ./external/SPARTA+/tab/HN.level1.WL1.tab\r\n< 0850bdbfd6ab5f7d4e307789a91a5b78 ./external/SPARTA+/tab/HN.level1.WL2.tab\r\n< c599ed22b1d99505f3383357a203d7fd ./external/SPARTA+/tab/N.level1.WI.tab\r\n< 695d72574c57c4f59fbfd080118dc70f ./external/SPARTA+/tab/N.level1.WL1.tab\r\n< e49c25070c36e478fcf9c9d57f19abbd ./external/SPARTA+/tab/N.level1.WL2.tab\r\n---\r\n> 2994c41d9e2bdcc86e2b1d9e3f4ed155 ./external/SPARTA+/tab/C.level1.WI.tab\r\n> 14d2d64a86e9d4269dffa9e9254cdea0 ./external/SPARTA+/tab/C.level1.WL1.tab\r\n> f54b00b89fa528c7dbfcb1264bc83935 ./external/SPARTA+/tab/C.level1.WL2.tab\r\n20593,20611d20583\r\n< e5955fc4c4107fff3cdf8fed2edd7aba ./external/SPARTA+/tab/errorSurface/C/C..A450.S5.RMS.tab\r\n< 4ec03e351ce9b13ed60d6950cbd61dfb ./external/SPARTA+/tab/errorSurface/C/D..A450.S5.RMS.tab\r\n< ae5253b4f4ea567a792d8b0449e732b2 ./external/SPARTA+/tab/errorSurface/C/E..A450.S5.RMS.tab\r\n< 6af4be52a6a6cfdac3b161feff760849 ./external/SPARTA+/tab/errorSurface/C/F..A450.S5.RMS.tab\r\n< 0e32588c1c3f6eeea140af0eaa27cb0d ./external/SPARTA+/tab/errorSurface/C/G..A450.S5.RMS.tab\r\n< 789278bed0e32f4c128fe34810e7fab1 ./external/SPARTA+/tab/errorSurface/C/H..A450.S5.RMS.tab\r\n< f12e4c2fcc5d3e6b291e78431351c2dd ./external/SPARTA+/tab/errorSurface/C/I..A450.S5.RMS.tab\r\n< 52a8dafe0f09ccc021d75f7873663597 ./external/SPARTA+/tab/errorSurface/C/K..A450.S5.RMS.tab\r\n< e595d33b159b342b0ecbd6a138406390 ./external/SPARTA+/tab/errorSurface/C/L..A450.S5.RMS.tab\r\n< 79a526d63a9aee936d65c18c5fef0908 ./external/SPARTA+/tab/errorSurface/C/M..A450.S5.RMS.tab\r\n< 6f31399266dba145e679c11270e13ec3 ./external/SPARTA+/tab/errorSurface/C/N..A450.S5.RMS.tab\r\n< ff2cdd0c377e24f3ace7f4a7b0f49378 ./external/SPARTA+/tab/errorSurface/C/P..A450.S5.RMS.tab\r\n< f5d93a3dd631caa70becf2d9dbdfe39d ./external/SPARTA+/tab/errorSurface/C/Q..A450.S5.RMS.tab\r\n< 7f221838d4cd64d29254315351598c88 ./external/SPARTA+/tab/errorSurface/C/R..A450.S5.RMS.tab\r\n< 7a74dad71bdf1c23a0aea7cb32bac72d ./external/SPARTA+/tab/errorSurface/C/S..A450.S5.RMS.tab\r\n< 52902ead85f94c2d70de76e283cd2d46 ./external/SPARTA+/tab/errorSurface/C/T..A450.S5.RMS.tab\r\n< a277c34c771adba2aca1ef48a9fe65e3 ./external/SPARTA+/tab/errorSurface/C/V..A450.S5.RMS.tab\r\n< 08f42192816f0ade76f4fb1d1f7d274d ./external/SPARTA+/tab/errorSurface/C/W..A450.S5.RMS.tab\r\n< 785f92a6113cd345b5a9b8e394e071e2 ./external/SPARTA+/tab/errorSurface/C/Y..A450.S5.RMS.tab\r\n20650a20623,20641\r\n> e5955fc4c4107fff3cdf8fed2edd7aba ./external/SPARTA+/tab/errorSurface/C/C..A450.S5.RMS.tab\r\n> 4ec03e351ce9b13ed60d6950cbd61dfb ./external/SPARTA+/tab/errorSurface/C/D..A450.S5.RMS.tab\r\n> ae5253b4f4ea567a792d8b0449e732b2 ./external/SPARTA+/tab/errorSurface/C/E..A450.S5.RMS.tab\r\n> 6af4be52a6a6cfdac3b161feff760849 ./external/SPARTA+/tab/errorSurface/C/F..A450.S5.RMS.tab\r\n> 0e32588c1c3f6eeea140af0eaa27cb0d ./external/SPARTA+/tab/errorSurface/C/G..A450.S5.RMS.tab\r\n> 789278bed0e32f4c128fe34810e7fab1 ./external/SPARTA+/tab/errorSurface/C/H..A450.S5.RMS.tab\r\n> f12e4c2fcc5d3e6b291e78431351c2dd ./external/SPARTA+/tab/errorSurface/C/I..A450.S5.RMS.tab\r\n> 52a8dafe0f09ccc021d75f7873663597 ./external/SPARTA+/tab/errorSurface/C/K..A450.S5.RMS.tab\r\n> e595d33b159b342b0ecbd6a138406390 ./external/SPARTA+/tab/errorSurface/C/L..A450.S5.RMS.tab\r\n> 79a526d63a9aee936d65c18c5fef0908 ./external/SPARTA+/tab/errorSurface/C/M..A450.S5.RMS.tab\r\n> 6f31399266dba145e679c11270e13ec3 ./external/SPARTA+/tab/errorSurface/C/N..A450.S5.RMS.tab\r\n> ff2cdd0c377e24f3ace7f4a7b0f49378 ./external/SPARTA+/tab/errorSurface/C/P..A450.S5.RMS.tab\r\n> f5d93a3dd631caa70becf2d9dbdfe39d ./external/SPARTA+/tab/errorSurface/C/Q..A450.S5.RMS.tab\r\n> 7f221838d4cd64d29254315351598c88 ./external/SPARTA+/tab/errorSurface/C/R..A450.S5.RMS.tab\r\n> 7a74dad71bdf1c23a0aea7cb32bac72d ./external/SPARTA+/tab/errorSurface/C/S..A450.S5.RMS.tab\r\n> 52902ead85f94c2d70de76e283cd2d46 ./external/SPARTA+/tab/errorSurface/C/T..A450.S5.RMS.tab\r\n> a277c34c771adba2aca1ef48a9fe65e3 ./external/SPARTA+/tab/errorSurface/C/V..A450.S5.RMS.tab\r\n> 08f42192816f0ade76f4fb1d1f7d274d ./external/SPARTA+/tab/errorSurface/C/W..A450.S5.RMS.tab\r\n> 785f92a6113cd345b5a9b8e394e071e2 ./external/SPARTA+/tab/errorSurface/C/Y..A450.S5.RMS.tab\r\n20710a20702,20707\r\n> 951050619a491259e1778bba2517a62c ./external/SPARTA+/tab/HA.level1.WI.tab\r\n> 038928cd40f111d20c2ddf126a170b42 ./external/SPARTA+/tab/HA.level1.WL1.tab\r\n> 2860ba9b9d2ed2b37e9f76e77e1f4053 ./external/SPARTA+/tab/HA.level1.WL2.tab\r\n> 06539974d4e9d50e5ddcc06961f083f5 ./external/SPARTA+/tab/HN.level1.WI.tab\r\n> d12b9e8788e58e458e619f21e15efc83 ./external/SPARTA+/tab/HN.level1.WL1.tab\r\n> 0850bdbfd6ab5f7d4e307789a91a5b78 ./external/SPARTA+/tab/HN.level1.WL2.tab\r\n20711a20709,20711\r\n> c599ed22b1d99505f3383357a203d7fd ./external/SPARTA+/tab/N.level1.WI.tab\r\n> 695d72574c57c4f59fbfd080118dc70f ./external/SPARTA+/tab/N.level1.WL1.tab\r\n> e49c25070c36e478fcf9c9d57f19abbd ./external/SPARTA+/tab/N.level1.WL2.tab\r\n20723a20724\r\n> 6944b8b16a20390a75437f52bdf9dea3 ./gpu/darc.cl\r\n20727d20727\r\n< 6944b8b16a20390a75437f52bdf9dea3 ./gpu/darc.cl\r\n20729d20728\r\n< 00774ec6d7aa270c4547f1457574f915 ./input_output/3-letter_codes/README.txt\r\n20734a20734\r\n> 00774ec6d7aa270c4547f1457574f915 ./input_output/3-letter_codes/README.txt\r\n20736d20735\r\n< 4c6b842c79a4081eb903caea32ed3692 ./input_output/README.txt\r\n20738a20738\r\n> 4c6b842c79a4081eb903caea32ed3692 ./input_output/README.txt\r\n20742,20743d20741\r\n< b6d1e44852fd99059d8009f9eec86bb1 ./protocol_data/SDE/GUIP.matrix\r\n< 5c11ada8f399e9b7f89fc8bd73778f84 ./protocol_data/SDE/spc216.pdb\r\n20748a20747\r\n> 25716e01de5a1bb46db37f197090651a ./protocol_data/crick_parameters/a3b.crick_params\r\n20750c20749,20753\r\n< ca24ec835808023b059a62e18cd86407 ./protocol_data/crick_parameters/L_PPI.crick_params\r\n---\r\n> dafdf8bc4e4d42182d3205dd609c6f20 ./protocol_data/crick_parameters/alpha_helix_100.crick_params\r\n> 61c0d2e8a7f2e4ae8ef5569dc8e5ba33 ./protocol_data/crick_parameters/alpha_helix.crick_params\r\n> b7cc5482fd9bf28fb866b62e554528af ./protocol_data/crick_parameters/beta_strand.crick_params\r\n> 7efae9ddec4ee0b6673e84ec6d9098e9 ./protocol_data/crick_parameters/collagen.crick_params\r\n> b11291441c4cc7f6923b3a1cb8989d2e ./protocol_data/crick_parameters/daa_beta_strand.crick_params\r\n20751a20755,20756\r\n> ca24ec835808023b059a62e18cd86407 ./protocol_data/crick_parameters/L_PPI.crick_params\r\n> 20337e0d83f4c5afbf30d70220420469 ./protocol_data/crick_parameters/neutral_beta_strand.crick_params\r\n20755a20761\r\n> 28536e9c292f4420112d67f1dca41b72 ./protocol_data/crick_parameters/three_10.crick_params\r\n20758,20765d20763\r\n< 25716e01de5a1bb46db37f197090651a ./protocol_data/crick_parameters/a3b.crick_params\r\n< 61c0d2e8a7f2e4ae8ef5569dc8e5ba33 ./protocol_data/crick_parameters/alpha_helix.crick_params\r\n< dafdf8bc4e4d42182d3205dd609c6f20 ./protocol_data/crick_parameters/alpha_helix_100.crick_params\r\n< b7cc5482fd9bf28fb866b62e554528af ./protocol_data/crick_parameters/beta_strand.crick_params\r\n< 7efae9ddec4ee0b6673e84ec6d9098e9 ./protocol_data/crick_parameters/collagen.crick_params\r\n< b11291441c4cc7f6923b3a1cb8989d2e ./protocol_data/crick_parameters/daa_beta_strand.crick_params\r\n< 20337e0d83f4c5afbf30d70220420469 ./protocol_data/crick_parameters/neutral_beta_strand.crick_params\r\n< 28536e9c292f4420112d67f1dca41b72 ./protocol_data/crick_parameters/three_10.crick_params\r\n20772a20771,20772\r\n> b6d1e44852fd99059d8009f9eec86bb1 ./protocol_data/SDE/GUIP.matrix\r\n> 5c11ada8f399e9b7f89fc8bd73778f84 ./protocol_data/SDE/spc216.pdb\r\n20797,20799d20796\r\n< 1e24c5a200f60f71bc8b3be246e9626d ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/.git\r\n< ae79e563b8a09c8fc37978f18dbaa640 ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/ESM/LICENSE\r\n< 0d759eb1132c8639588f1ce613abeb04 ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/ESM/README.md\r\n20804c20801,20804\r\n< 22450bad1440f2ed2bab00abb4f60ba2 ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/README.md\r\n---\r\n> ae79e563b8a09c8fc37978f18dbaa640 ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/ESM/LICENSE\r\n> 0d759eb1132c8639588f1ce613abeb04 ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/ESM/README.md\r\n> 1e24c5a200f60f71bc8b3be246e9626d ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/.git\r\n> 08916859a0ec5d4eb6ef25e3ec6a1c81 ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/predict_PTMs/deamidation_rates.csv\r\n20881c20881\r\n< 08916859a0ec5d4eb6ef25e3ec6a1c81 ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/predict_PTMs/deamidation_rates.csv\r\n---\r\n> 22450bad1440f2ed2bab00abb4f60ba2 ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/README.md\r\n20883d20882\r\n< c1a2960e6c3c14e74a9ef2c8d1313cdc ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/trRosetta/README.md\r\n20885,20923c20884\r\n< f2d956ca993a1f232dfd1a558bf1b09e ./rotamer/.gitignore\r\n< d28acfa25d7d302fb495eafc7aedb300 ./rotamer/ExtendedOpt1-5/.gitignore\r\n< c539ab44dd377506eab6f07c9e268f10 ./rotamer/ExtendedOpt1-5/AcademicLicenseBBDep2010.txt\r\n< d41d8cd98f00b204e9800998ecf8427e ./rotamer/ExtendedOpt1-5/Default-5StepDown.txt\r\n< 62c42f18acc2b7a13db0cfd123dfaa86 ./rotamer/ExtendedOpt1-5/Description.txt\r\n< d70e07420395547040572fda941029ac ./rotamer/ExtendedOpt1-5/arg.bbdep.rotamers.lib.gz\r\n< e68beb7f8ac8c72b537abcd67560965f ./rotamer/ExtendedOpt1-5/asn.bbdep.densities.lib.gz\r\n< 45d2236906de763107bc28e6e2f21bb1 ./rotamer/ExtendedOpt1-5/asn.bbdep.rotamers.lib.gz\r\n< c46cd85409ef429e60ecd77dde089844 ./rotamer/ExtendedOpt1-5/asn.bbind.chi2.Definitions.lib.gz\r\n< de119857942056ac814b5fea554c9207 ./rotamer/ExtendedOpt1-5/asp.bbdep.densities.lib.gz\r\n< e16bbdac18757f5828ac43e556c67424 ./rotamer/ExtendedOpt1-5/asp.bbdep.rotamers.lib.gz\r\n< 5ab9bf0f8410a4c2c986939b2d304968 ./rotamer/ExtendedOpt1-5/asp.bbind.chi2.Definitions.lib.gz\r\n< d1e90bfacb0ffb468bfd789577ae6a75 ./rotamer/ExtendedOpt1-5/cys.bbdep.rotamers.lib.gz\r\n< e77ce44aceb7846a4425218ecf03a722 ./rotamer/ExtendedOpt1-5/gln.bbdep.densities.lib.gz\r\n< d6d1446d5b606f4ce3d3862b98f56dc7 ./rotamer/ExtendedOpt1-5/gln.bbdep.rotamers.lib.gz\r\n< 65a27f17492e44f85c972c1b8bb54c75 ./rotamer/ExtendedOpt1-5/gln.bbind.chi3.Definitions.lib.gz\r\n< 7aa7315035393e00274b4294884b5015 ./rotamer/ExtendedOpt1-5/glu.bbdep.densities.lib.gz\r\n< 9c895cbdf414b94fe55748f9d5b52f54 ./rotamer/ExtendedOpt1-5/glu.bbdep.rotamers.lib.gz\r\n< dd491e2e44f73ede6e3f78ead597428c ./rotamer/ExtendedOpt1-5/glu.bbind.chi3.Definitions.lib.gz\r\n< 226df9b344ca2ad7c6a8719df441a2c1 ./rotamer/ExtendedOpt1-5/his.bbdep.densities.lib.gz\r\n< 7155efdce994172532e66efa7786de10 ./rotamer/ExtendedOpt1-5/his.bbdep.rotamers.lib.gz\r\n< 3509961ef23865ecde735136370030ea ./rotamer/ExtendedOpt1-5/his.bbind.chi2.Definitions.lib.gz\r\n< 503fa06c2604b766227c60f69cdde452 ./rotamer/ExtendedOpt1-5/ile.bbdep.rotamers.lib.gz\r\n< b2a5393a9a5f333f636f1cbdd42d81de ./rotamer/ExtendedOpt1-5/leu.bbdep.rotamers.lib.gz\r\n< 4644ceb68b612214ac7c7f93e24d13e8 ./rotamer/ExtendedOpt1-5/lys.bbdep.rotamers.lib.gz\r\n< 0de838b5b925a773cea852d24d3631c0 ./rotamer/ExtendedOpt1-5/met.bbdep.rotamers.lib.gz\r\n< fcaddd83effe4197d4ae3aa18d253226 ./rotamer/ExtendedOpt1-5/phe.bbdep.densities.lib.gz\r\n< 247232dee4bb8491f55637280b4b7887 ./rotamer/ExtendedOpt1-5/phe.bbdep.rotamers.lib.gz\r\n< c0e0db96d26d6538cda0e1b13c98d1ef ./rotamer/ExtendedOpt1-5/phe.bbind.chi2.Definitions.lib.gz\r\n< d13e93fa76cc247b11a142d58ccf73b5 ./rotamer/ExtendedOpt1-5/pro.bbdep.rotamers.lib.gz\r\n< 8c19120cfdbd54e51ca65b4809a33312 ./rotamer/ExtendedOpt1-5/ser.bbdep.rotamers.lib.gz\r\n< b9fedac1db3e280ecca36ef9a2117ce7 ./rotamer/ExtendedOpt1-5/thr.bbdep.rotamers.lib.gz\r\n< 18984ead0feaa68e3393f9defdc35547 ./rotamer/ExtendedOpt1-5/trp.bbdep.densities.lib.gz\r\n< a74dc00a29cdffe87d7749cd5c8ac8dc ./rotamer/ExtendedOpt1-5/trp.bbdep.rotamers.lib.gz\r\n< 029271e2c2a197c26d52eba41ba34090 ./rotamer/ExtendedOpt1-5/trp.bbind.chi2.Definitions.lib.gz\r\n< 6fb5104cc0be5db8bf04c0bbfbb94357 ./rotamer/ExtendedOpt1-5/tyr.bbdep.densities.lib.gz\r\n< a81007417ab567f7e6cbb9b923076d97 ./rotamer/ExtendedOpt1-5/tyr.bbdep.rotamers.lib.gz\r\n< 0fe5b5dc88319670d871ff188eabb29e ./rotamer/ExtendedOpt1-5/tyr.bbind.chi2.Definitions.lib.gz\r\n< 3bfc96e61aa008f296e71ae8a495623d ./rotamer/ExtendedOpt1-5/val.bbdep.rotamers.lib.gz\r\n---\r\n> c1a2960e6c3c14e74a9ef2c8d1313cdc ./protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule/trRosetta/README.md\r\n20962,20963d20922\r\n< d41d8cd98f00b204e9800998ecf8427e ./rotamer/corrections_conway2016/Default-5StepDown.txt\r\n< 62c42f18acc2b7a13db0cfd123dfaa86 ./rotamer/corrections_conway2016/Description.txt\r\n20971a20931,20932\r\n> d41d8cd98f00b204e9800998ecf8427e ./rotamer/corrections_conway2016/Default-5StepDown.txt\r\n> 62c42f18acc2b7a13db0cfd123dfaa86 ./rotamer/corrections_conway2016/Description.txt\r\n21001a20963,21001\r\n> c539ab44dd377506eab6f07c9e268f10 ./rotamer/ExtendedOpt1-5/AcademicLicenseBBDep2010.txt\r\n> d70e07420395547040572fda941029ac ./rotamer/ExtendedOpt1-5/arg.bbdep.rotamers.lib.gz\r\n> e68beb7f8ac8c72b537abcd67560965f ./rotamer/ExtendedOpt1-5/asn.bbdep.densities.lib.gz\r\n> 45d2236906de763107bc28e6e2f21bb1 ./rotamer/ExtendedOpt1-5/asn.bbdep.rotamers.lib.gz\r\n> c46cd85409ef429e60ecd77dde089844 ./rotamer/ExtendedOpt1-5/asn.bbind.chi2.Definitions.lib.gz\r\n> de119857942056ac814b5fea554c9207 ./rotamer/ExtendedOpt1-5/asp.bbdep.densities.lib.gz\r\n> e16bbdac18757f5828ac43e556c67424 ./rotamer/ExtendedOpt1-5/asp.bbdep.rotamers.lib.gz\r\n> 5ab9bf0f8410a4c2c986939b2d304968 ./rotamer/ExtendedOpt1-5/asp.bbind.chi2.Definitions.lib.gz\r\n> d1e90bfacb0ffb468bfd789577ae6a75 ./rotamer/ExtendedOpt1-5/cys.bbdep.rotamers.lib.gz\r\n> d41d8cd98f00b204e9800998ecf8427e ./rotamer/ExtendedOpt1-5/Default-5StepDown.txt\r\n> 62c42f18acc2b7a13db0cfd123dfaa86 ./rotamer/ExtendedOpt1-5/Description.txt\r\n> d28acfa25d7d302fb495eafc7aedb300 ./rotamer/ExtendedOpt1-5/.gitignore\r\n> e77ce44aceb7846a4425218ecf03a722 ./rotamer/ExtendedOpt1-5/gln.bbdep.densities.lib.gz\r\n> d6d1446d5b606f4ce3d3862b98f56dc7 ./rotamer/ExtendedOpt1-5/gln.bbdep.rotamers.lib.gz\r\n> 65a27f17492e44f85c972c1b8bb54c75 ./rotamer/ExtendedOpt1-5/gln.bbind.chi3.Definitions.lib.gz\r\n> 7aa7315035393e00274b4294884b5015 ./rotamer/ExtendedOpt1-5/glu.bbdep.densities.lib.gz\r\n> 9c895cbdf414b94fe55748f9d5b52f54 ./rotamer/ExtendedOpt1-5/glu.bbdep.rotamers.lib.gz\r\n> dd491e2e44f73ede6e3f78ead597428c ./rotamer/ExtendedOpt1-5/glu.bbind.chi3.Definitions.lib.gz\r\n> 226df9b344ca2ad7c6a8719df441a2c1 ./rotamer/ExtendedOpt1-5/his.bbdep.densities.lib.gz\r\n> 7155efdce994172532e66efa7786de10 ./rotamer/ExtendedOpt1-5/his.bbdep.rotamers.lib.gz\r\n> 3509961ef23865ecde735136370030ea ./rotamer/ExtendedOpt1-5/his.bbind.chi2.Definitions.lib.gz\r\n> 503fa06c2604b766227c60f69cdde452 ./rotamer/ExtendedOpt1-5/ile.bbdep.rotamers.lib.gz\r\n> b2a5393a9a5f333f636f1cbdd42d81de ./rotamer/ExtendedOpt1-5/leu.bbdep.rotamers.lib.gz\r\n> 4644ceb68b612214ac7c7f93e24d13e8 ./rotamer/ExtendedOpt1-5/lys.bbdep.rotamers.lib.gz\r\n> 0de838b5b925a773cea852d24d3631c0 ./rotamer/ExtendedOpt1-5/met.bbdep.rotamers.lib.gz\r\n> fcaddd83effe4197d4ae3aa18d253226 ./rotamer/ExtendedOpt1-5/phe.bbdep.densities.lib.gz\r\n> 247232dee4bb8491f55637280b4b7887 ./rotamer/ExtendedOpt1-5/phe.bbdep.rotamers.lib.gz\r\n> c0e0db96d26d6538cda0e1b13c98d1ef ./rotamer/ExtendedOpt1-5/phe.bbind.chi2.Definitions.lib.gz\r\n> d13e93fa76cc247b11a142d58ccf73b5 ./rotamer/ExtendedOpt1-5/pro.bbdep.rotamers.lib.gz\r\n> 8c19120cfdbd54e51ca65b4809a33312 ./rotamer/ExtendedOpt1-5/ser.bbdep.rotamers.lib.gz\r\n> b9fedac1db3e280ecca36ef9a2117ce7 ./rotamer/ExtendedOpt1-5/thr.bbdep.rotamers.lib.gz\r\n> 18984ead0feaa68e3393f9defdc35547 ./rotamer/ExtendedOpt1-5/trp.bbdep.densities.lib.gz\r\n> a74dc00a29cdffe87d7749cd5c8ac8dc ./rotamer/ExtendedOpt1-5/trp.bbdep.rotamers.lib.gz\r\n> 029271e2c2a197c26d52eba41ba34090 ./rotamer/ExtendedOpt1-5/trp.bbind.chi2.Definitions.lib.gz\r\n> 6fb5104cc0be5db8bf04c0bbfbb94357 ./rotamer/ExtendedOpt1-5/tyr.bbdep.densities.lib.gz\r\n> a81007417ab567f7e6cbb9b923076d97 ./rotamer/ExtendedOpt1-5/tyr.bbdep.rotamers.lib.gz\r\n> 0fe5b5dc88319670d871ff188eabb29e ./rotamer/ExtendedOpt1-5/tyr.bbind.chi2.Definitions.lib.gz\r\n> 3bfc96e61aa008f296e71ae8a495623d ./rotamer/ExtendedOpt1-5/val.bbdep.rotamers.lib.gz\r\n> f2d956ca993a1f232dfd1a558bf1b09e ./rotamer/.gitignore\r\n21003,21004d21002\r\n< 6c811cf64a98256769a321b3d5dc9e89 ./rotamer/ncaa_rotlibs/NAP.rotlib\r\n< 7461badbb969f0d579e54d16d6fade4e ./rotamer/ncaa_rotlibs/Readme\r\n21005a21004\r\n> 6c811cf64a98256769a321b3d5dc9e89 ./rotamer/ncaa_rotlibs/NAP.rotlib\r\n21015a21015\r\n> 7461badbb969f0d579e54d16d6fade4e ./rotamer/ncaa_rotlibs/Readme\r\n21018d21017\r\n< 88fa9f694690e11239096536ccf2702b ./rotamer/shapovalov/.gitignore\r\n21019a21019\r\n> 9fca8b2c5743394d96f5e5113a56fa17 ./rotamer/shapovalov/argumentsExample.shapovalov.txt\r\n21020a21021\r\n> 88fa9f694690e11239096536ccf2702b ./rotamer/shapovalov/.gitignore\r\n21022,21023d21022\r\n< e56833d5b70c5111ce29db7432118f7a ./rotamer/shapovalov/StpDwn_0-0-0/Description.txt\r\n< ac988f10e9fbe1ac31fd6b760e288ea3 ./rotamer/shapovalov/StpDwn_0-0-0/Taken.From.txt\r\n21031a21031\r\n> e56833d5b70c5111ce29db7432118f7a ./rotamer/shapovalov/StpDwn_0-0-0/Description.txt\r\n21049a21050\r\n> ac988f10e9fbe1ac31fd6b760e288ea3 ./rotamer/shapovalov/StpDwn_0-0-0/Taken.From.txt\r\n21059,21060d21059\r\n< e56833d5b70c5111ce29db7432118f7a ./rotamer/shapovalov/StpDwn_10-10-10/Description.txt\r\n< 1ee9c75f008e4be3498246689d19f539 ./rotamer/shapovalov/StpDwn_10-10-10/Taken.From.txt\r\n21068a21068\r\n> e56833d5b70c5111ce29db7432118f7a ./rotamer/shapovalov/StpDwn_10-10-10/Description.txt\r\n21086a21087\r\n> 1ee9c75f008e4be3498246689d19f539 ./rotamer/shapovalov/StpDwn_10-10-10/Taken.From.txt\r\n21095,21131d21095\r\n< 720f66f800f3c6d7c4906618535ca836 ./rotamer/shapovalov/StpDwn_2-2-2/AcademicLicenseBBDep2010.txt\r\n< e56833d5b70c5111ce29db7432118f7a ./rotamer/shapovalov/StpDwn_2-2-2/Description.txt\r\n< 9b2d079e4f7834e22d1d78c2b23db358 ./rotamer/shapovalov/StpDwn_2-2-2/Taken.From.txt\r\n< a3084a465abc5dea75f08d61cc373b18 ./rotamer/shapovalov/StpDwn_2-2-2/arg.bbdep.rotamers.lib.gz\r\n< ded7283ddba62ab073502e2e51b20c0d ./rotamer/shapovalov/StpDwn_2-2-2/asn.bbdep.densities.lib.gz\r\n< fdfb285f19488c4764ba6f9059cb9e3e ./rotamer/shapovalov/StpDwn_2-2-2/asn.bbdep.rotamers.lib.gz\r\n< 664e849f8c49ffff2239afba97c97b15 ./rotamer/shapovalov/StpDwn_2-2-2/asn.bbind.chi2.Definitions.lib.gz\r\n< b836c75781c90aeb7d18d88fa8f57cbd ./rotamer/shapovalov/StpDwn_2-2-2/asp.bbdep.densities.lib.gz\r\n< fbc9af546354d3a6d459cea712eacaf6 ./rotamer/shapovalov/StpDwn_2-2-2/asp.bbdep.rotamers.lib.gz\r\n< d8febd1d4352d89d61b1fe1d27070751 ./rotamer/shapovalov/StpDwn_2-2-2/asp.bbind.chi2.Definitions.lib.gz\r\n< 1691a22a6ee7a3d56c6ec7ceda91a871 ./rotamer/shapovalov/StpDwn_2-2-2/cys.bbdep.rotamers.lib.gz\r\n< c9ae3a65df797b6ea26b6598700b513c ./rotamer/shapovalov/StpDwn_2-2-2/gln.bbdep.densities.lib.gz\r\n< 71ea733cf06ae68507dd31fda01c41e5 ./rotamer/shapovalov/StpDwn_2-2-2/gln.bbdep.rotamers.lib.gz\r\n< d81e424a762196cd85b69d3bff356c0a ./rotamer/shapovalov/StpDwn_2-2-2/gln.bbind.chi3.Definitions.lib.gz\r\n< 90817dec13d7a024d2206b1a67365690 ./rotamer/shapovalov/StpDwn_2-2-2/glu.bbdep.densities.lib.gz\r\n< e6919af6a75f2fbdd4a9d3c8ef4bb3a0 ./rotamer/shapovalov/StpDwn_2-2-2/glu.bbdep.rotamers.lib.gz\r\n< 31052c2c527a4b04523eacc7149db4b0 ./rotamer/shapovalov/StpDwn_2-2-2/glu.bbind.chi3.Definitions.lib.gz\r\n< 92fc46e7790b4fac7680dd1af76fadc2 ./rotamer/shapovalov/StpDwn_2-2-2/his.bbdep.densities.lib.gz\r\n< e0b5454471c19a5c73c64e1d9e7ef6f9 ./rotamer/shapovalov/StpDwn_2-2-2/his.bbdep.rotamers.lib.gz\r\n< c24aca77c34f480963c0f2e2c0a3bd1c ./rotamer/shapovalov/StpDwn_2-2-2/his.bbind.chi2.Definitions.lib.gz\r\n< 504b11742608a1cc761b5abf7ffbc17f ./rotamer/shapovalov/StpDwn_2-2-2/ile.bbdep.rotamers.lib.gz\r\n< b5a29eb7c12646b3550e1c9bb4508f70 ./rotamer/shapovalov/StpDwn_2-2-2/leu.bbdep.rotamers.lib.gz\r\n< bcd9b239ce83ba7593b4963ce821844d ./rotamer/shapovalov/StpDwn_2-2-2/lys.bbdep.rotamers.lib.gz\r\n< 1fb49fc652a5eebb1e2ce5e9a1368f0f ./rotamer/shapovalov/StpDwn_2-2-2/met.bbdep.rotamers.lib.gz\r\n< daebb060d1aee64127a3b3b935f58932 ./rotamer/shapovalov/StpDwn_2-2-2/phe.bbdep.densities.lib.gz\r\n< 5d5f16a7356f3e9eff714e529596c879 ./rotamer/shapovalov/StpDwn_2-2-2/phe.bbdep.rotamers.lib.gz\r\n< acebab08b565aac0bf2944699aa0d50c ./rotamer/shapovalov/StpDwn_2-2-2/phe.bbind.chi2.Definitions.lib.gz\r\n< 0773368be41c226d6be55e4595609877 ./rotamer/shapovalov/StpDwn_2-2-2/pro.bbdep.rotamers.lib.gz\r\n< 971edd19f6a38d154d656221e351aae4 ./rotamer/shapovalov/StpDwn_2-2-2/ser.bbdep.rotamers.lib.gz\r\n< 5d8f07e539b483eb65feb56e38879fb0 ./rotamer/shapovalov/StpDwn_2-2-2/thr.bbdep.rotamers.lib.gz\r\n< e15baea6d5d454bc9a151eeebdc2e7f6 ./rotamer/shapovalov/StpDwn_2-2-2/trp.bbdep.densities.lib.gz\r\n< ae8d7419b5ae11d59ea77229cf63bf19 ./rotamer/shapovalov/StpDwn_2-2-2/trp.bbdep.rotamers.lib.gz\r\n< 008457fdc250825ec14c22bc35f694f9 ./rotamer/shapovalov/StpDwn_2-2-2/trp.bbind.chi2.Definitions.lib.gz\r\n< 5707386003fc8319d8282b376e29203e ./rotamer/shapovalov/StpDwn_2-2-2/tyr.bbdep.densities.lib.gz\r\n< 673753ce1139ff579f6285b7afedc3f6 ./rotamer/shapovalov/StpDwn_2-2-2/tyr.bbdep.rotamers.lib.gz\r\n< 8ec0374c7ef119f196dfd3540306b269 ./rotamer/shapovalov/StpDwn_2-2-2/tyr.bbind.chi2.Definitions.lib.gz\r\n< 74bd30c405212ce6bfe718b692da14cb ./rotamer/shapovalov/StpDwn_2-2-2/val.bbdep.rotamers.lib.gz\r\n21133,21134d21096\r\n< e56833d5b70c5111ce29db7432118f7a ./rotamer/shapovalov/StpDwn_20-20-20/Description.txt\r\n< dbf91d2aab7e0440b467bca19eef6435 ./rotamer/shapovalov/StpDwn_20-20-20/Taken.From.txt\r\n21142a21105\r\n> e56833d5b70c5111ce29db7432118f7a ./rotamer/shapovalov/StpDwn_20-20-20/Description.txt\r\n21160a21124\r\n> dbf91d2aab7e0440b467bca19eef6435 ./rotamer/shapovalov/StpDwn_20-20-20/Taken.From.txt\r\n21168a21133,21169\r\n> 720f66f800f3c6d7c4906618535ca836 ./rotamer/shapovalov/StpDwn_2-2-2/AcademicLicenseBBDep2010.txt\r\n> a3084a465abc5dea75f08d61cc373b18 ./rotamer/shapovalov/StpDwn_2-2-2/arg.bbdep.rotamers.lib.gz\r\n> ded7283ddba62ab073502e2e51b20c0d ./rotamer/shapovalov/StpDwn_2-2-2/asn.bbdep.densities.lib.gz\r\n> fdfb285f19488c4764ba6f9059cb9e3e ./rotamer/shapovalov/StpDwn_2-2-2/asn.bbdep.rotamers.lib.gz\r\n> 664e849f8c49ffff2239afba97c97b15 ./rotamer/shapovalov/StpDwn_2-2-2/asn.bbind.chi2.Definitions.lib.gz\r\n> b836c75781c90aeb7d18d88fa8f57cbd ./rotamer/shapovalov/StpDwn_2-2-2/asp.bbdep.densities.lib.gz\r\n> fbc9af546354d3a6d459cea712eacaf6 ./rotamer/shapovalov/StpDwn_2-2-2/asp.bbdep.rotamers.lib.gz\r\n> d8febd1d4352d89d61b1fe1d27070751 ./rotamer/shapovalov/StpDwn_2-2-2/asp.bbind.chi2.Definitions.lib.gz\r\n> 1691a22a6ee7a3d56c6ec7ceda91a871 ./rotamer/shapovalov/StpDwn_2-2-2/cys.bbdep.rotamers.lib.gz\r\n> e56833d5b70c5111ce29db7432118f7a ./rotamer/shapovalov/StpDwn_2-2-2/Description.txt\r\n> c9ae3a65df797b6ea26b6598700b513c ./rotamer/shapovalov/StpDwn_2-2-2/gln.bbdep.densities.lib.gz\r\n> 71ea733cf06ae68507dd31fda01c41e5 ./rotamer/shapovalov/StpDwn_2-2-2/gln.bbdep.rotamers.lib.gz\r\n> d81e424a762196cd85b69d3bff356c0a ./rotamer/shapovalov/StpDwn_2-2-2/gln.bbind.chi3.Definitions.lib.gz\r\n> 90817dec13d7a024d2206b1a67365690 ./rotamer/shapovalov/StpDwn_2-2-2/glu.bbdep.densities.lib.gz\r\n> e6919af6a75f2fbdd4a9d3c8ef4bb3a0 ./rotamer/shapovalov/StpDwn_2-2-2/glu.bbdep.rotamers.lib.gz\r\n> 31052c2c527a4b04523eacc7149db4b0 ./rotamer/shapovalov/StpDwn_2-2-2/glu.bbind.chi3.Definitions.lib.gz\r\n> 92fc46e7790b4fac7680dd1af76fadc2 ./rotamer/shapovalov/StpDwn_2-2-2/his.bbdep.densities.lib.gz\r\n> e0b5454471c19a5c73c64e1d9e7ef6f9 ./rotamer/shapovalov/StpDwn_2-2-2/his.bbdep.rotamers.lib.gz\r\n> c24aca77c34f480963c0f2e2c0a3bd1c ./rotamer/shapovalov/StpDwn_2-2-2/his.bbind.chi2.Definitions.lib.gz\r\n> 504b11742608a1cc761b5abf7ffbc17f ./rotamer/shapovalov/StpDwn_2-2-2/ile.bbdep.rotamers.lib.gz\r\n> b5a29eb7c12646b3550e1c9bb4508f70 ./rotamer/shapovalov/StpDwn_2-2-2/leu.bbdep.rotamers.lib.gz\r\n> bcd9b239ce83ba7593b4963ce821844d ./rotamer/shapovalov/StpDwn_2-2-2/lys.bbdep.rotamers.lib.gz\r\n> 1fb49fc652a5eebb1e2ce5e9a1368f0f ./rotamer/shapovalov/StpDwn_2-2-2/met.bbdep.rotamers.lib.gz\r\n> daebb060d1aee64127a3b3b935f58932 ./rotamer/shapovalov/StpDwn_2-2-2/phe.bbdep.densities.lib.gz\r\n> 5d5f16a7356f3e9eff714e529596c879 ./rotamer/shapovalov/StpDwn_2-2-2/phe.bbdep.rotamers.lib.gz\r\n> acebab08b565aac0bf2944699aa0d50c ./rotamer/shapovalov/StpDwn_2-2-2/phe.bbind.chi2.Definitions.lib.gz\r\n> 0773368be41c226d6be55e4595609877 ./rotamer/shapovalov/StpDwn_2-2-2/pro.bbdep.rotamers.lib.gz\r\n> 971edd19f6a38d154d656221e351aae4 ./rotamer/shapovalov/StpDwn_2-2-2/ser.bbdep.rotamers.lib.gz\r\n> 9b2d079e4f7834e22d1d78c2b23db358 ./rotamer/shapovalov/StpDwn_2-2-2/Taken.From.txt\r\n> 5d8f07e539b483eb65feb56e38879fb0 ./rotamer/shapovalov/StpDwn_2-2-2/thr.bbdep.rotamers.lib.gz\r\n> e15baea6d5d454bc9a151eeebdc2e7f6 ./rotamer/shapovalov/StpDwn_2-2-2/trp.bbdep.densities.lib.gz\r\n> ae8d7419b5ae11d59ea77229cf63bf19 ./rotamer/shapovalov/StpDwn_2-2-2/trp.bbdep.rotamers.lib.gz\r\n> 008457fdc250825ec14c22bc35f694f9 ./rotamer/shapovalov/StpDwn_2-2-2/trp.bbind.chi2.Definitions.lib.gz\r\n> 5707386003fc8319d8282b376e29203e ./rotamer/shapovalov/StpDwn_2-2-2/tyr.bbdep.densities.lib.gz\r\n> 673753ce1139ff579f6285b7afedc3f6 ./rotamer/shapovalov/StpDwn_2-2-2/tyr.bbdep.rotamers.lib.gz\r\n> 8ec0374c7ef119f196dfd3540306b269 ./rotamer/shapovalov/StpDwn_2-2-2/tyr.bbind.chi2.Definitions.lib.gz\r\n> 74bd30c405212ce6bfe718b692da14cb ./rotamer/shapovalov/StpDwn_2-2-2/val.bbdep.rotamers.lib.gz\r\n21170,21171d21170\r\n< e56833d5b70c5111ce29db7432118f7a ./rotamer/shapovalov/StpDwn_25-25-25/Description.txt\r\n< 6fe94ccaa085b2067001ea9e5a717190 ./rotamer/shapovalov/StpDwn_25-25-25/Taken.From.txt\r\n21179a21179\r\n> e56833d5b70c5111ce29db7432118f7a ./rotamer/shapovalov/StpDwn_25-25-25/Description.txt\r\n21197a21198\r\n> 6fe94ccaa085b2067001ea9e5a717190 ./rotamer/shapovalov/StpDwn_25-25-25/Taken.From.txt\r\n21207,21209d21207\r\n< e56833d5b70c5111ce29db7432118f7a ./rotamer/shapovalov/StpDwn_5-5-5/Description.txt\r\n< d523d2cc401ec0aea72f820c17cef454 ./rotamer/shapovalov/StpDwn_5-5-5/Suggested.Default.txt\r\n< 7b9a71ce2f9e4d7f14e80d34ab33495c ./rotamer/shapovalov/StpDwn_5-5-5/Taken.From.txt\r\n21217a21216\r\n> e56833d5b70c5111ce29db7432118f7a ./rotamer/shapovalov/StpDwn_5-5-5/Description.txt\r\n21235a21235,21236\r\n> d523d2cc401ec0aea72f820c17cef454 ./rotamer/shapovalov/StpDwn_5-5-5/Suggested.Default.txt\r\n> 7b9a71ce2f9e4d7f14e80d34ab33495c ./rotamer/shapovalov/StpDwn_5-5-5/Taken.From.txt\r\n21246,21249d21246\r\n< 9fca8b2c5743394d96f5e5113a56fa17 ./rotamer/shapovalov/argumentsExample.shapovalov.txt\r\n< bfeae5081d6202ad71c8394178d20ad1 ./sampling/SASA-angles.dat\r\n< 827067e9a3806ca6f41ffc5b6a77876c ./sampling/SASA-masks.dat\r\n< 6466af1ac4800f7e8b4eab71cedd228f ./sampling/antibodies/Fragments/H3_CTERM\r\n21332d21328\r\n< b3ceb356b4fee031bd6e6478e9d2b478 ./sampling/antibodies/cluster_based_constraints/CircularHarmonic/outliers_false_liberal/H1-13-1.txt\r\n21334a21331\r\n> b3ceb356b4fee031bd6e6478e9d2b478 ./sampling/antibodies/cluster_based_constraints/CircularHarmonic/outliers_false_liberal/H1-13-1.txt\r\n21440d21436\r\n< f5246e1bad2e622c0ff80eb9cfb364e4 ./sampling/antibodies/cluster_based_constraints/CircularHarmonic/outliers_false_liberal_use_means/H1-13-1.txt\r\n21442a21439\r\n> f5246e1bad2e622c0ff80eb9cfb364e4 ./sampling/antibodies/cluster_based_constraints/CircularHarmonic/outliers_false_liberal_use_means/H1-13-1.txt\r\n21549d21545\r\n< 06ce3f8ca33d7cd9f92c028c2df9a13f ./sampling/antibodies/cluster_based_constraints/CircularHarmonic/outliers_true/H1-13-1.txt\r\n21551a21548\r\n> 06ce3f8ca33d7cd9f92c028c2df9a13f ./sampling/antibodies/cluster_based_constraints/CircularHarmonic/outliers_true/H1-13-1.txt\r\n21663d21659\r\n< 393aa8fa255e9fc743c3771492916014 ./sampling/antibodies/cluster_based_constraints/CircularHarmonic/outliers_true_use_means/H1-13-1.txt\r\n21665a21662\r\n> 393aa8fa255e9fc743c3771492916014 ./sampling/antibodies/cluster_based_constraints/CircularHarmonic/outliers_true_use_means/H1-13-1.txt\r\n21775d21771\r\n< 4ae9c71b0f1c61b8afb2a8f22a242c2d ./sampling/antibodies/cluster_center_dihedrals.txt\r\n21776a21773\r\n> 4ae9c71b0f1c61b8afb2a8f22a242c2d ./sampling/antibodies/cluster_center_dihedrals.txt\r\n21779a21777\r\n> 6466af1ac4800f7e8b4eab71cedd228f ./sampling/antibodies/Fragments/H3_CTERM\r\n21782d21779\r\n< fe406905a5ab8bd0de410dc93e8b99d5 ./sampling/antibodies/numbering_schemes/numbering_scheme_definitions.txt\r\n21783a21781\r\n> fe406905a5ab8bd0de410dc93e8b99d5 ./sampling/antibodies/numbering_schemes/numbering_scheme_definitions.txt\r\n21794a21793\r\n> 3277fa8060c9969f0c5f3ed721c45b34 ./sampling/fragpicker_rama_tables/E_dc.counts.gz\r\n21795a21795\r\n> f5e4508caf4f660bd1975dcaeb485752 ./sampling/fragpicker_rama_tables/E_dcP.counts.gz\r\n21831,21832d21830\r\n< 3277fa8060c9969f0c5f3ed721c45b34 ./sampling/fragpicker_rama_tables/E_dc.counts.gz\r\n< f5e4508caf4f660bd1975dcaeb485752 ./sampling/fragpicker_rama_tables/E_dcP.counts.gz\r\n21836a21835\r\n> 91b00e1bd0c4dd8d8eb43c19f5fc51d7 ./sampling/fragpicker_rama_tables/H_dc.counts.gz\r\n21837a21837\r\n> 21f935152d7b0c9c78fa7b7b7f6566c6 ./sampling/fragpicker_rama_tables/H_dcP.counts.gz\r\n21873,21874d21872\r\n< 91b00e1bd0c4dd8d8eb43c19f5fc51d7 ./sampling/fragpicker_rama_tables/H_dc.counts.gz\r\n< 21f935152d7b0c9c78fa7b7b7f6566c6 ./sampling/fragpicker_rama_tables/H_dcP.counts.gz\r\n21878a21877\r\n> 9b6d46b6325c98d0932069c76e8b037c ./sampling/fragpicker_rama_tables/L_dc.counts.gz\r\n21879a21879\r\n> b00b477c023b5077e7968e4a9cd34928 ./sampling/fragpicker_rama_tables/L_dcP.counts.gz\r\n21915,21916d21914\r\n< 9b6d46b6325c98d0932069c76e8b037c ./sampling/fragpicker_rama_tables/L_dc.counts.gz\r\n< b00b477c023b5077e7968e4a9cd34928 ./sampling/fragpicker_rama_tables/L_dcP.counts.gz\r\n21918d21915\r\n< 4bd5d9b7660b6fc927c593a1da8c741a ./sampling/orientations/orientgridall/ExpandSet.cpp\r\n21922d21918\r\n< 7ea61dfa5f11079e3ad85a320950bcb5 ./sampling/orientations/orientgridall/data/c48u1.grid.gz\r\n21944d21939\r\n< 8329048829edab41a3a9e186edf5b660 ./sampling/orientations/orientgridall/data/c48u181.grid.gz\r\n21945a21941\r\n> 8329048829edab41a3a9e186edf5b660 ./sampling/orientations/orientgridall/data/c48u181.grid.gz\r\n21947a21944\r\n> 7ea61dfa5f11079e3ad85a320950bcb5 ./sampling/orientations/orientgridall/data/c48u1.grid.gz\r\n21956d21952\r\n< b7ae491e99fcd0bd37c4bddfd88d66d4 ./sampling/orientations/orientgridall/data/c48u27.grid.gz\r\n21957a21954\r\n> b7ae491e99fcd0bd37c4bddfd88d66d4 ./sampling/orientations/orientgridall/data/c48u27.grid.gz\r\n22004d22000\r\n< 74854dd5a9fda3df8472d825c10836a5 ./sampling/orientations/orientgridall/data/c48u83.grid.gz\r\n22005a22002\r\n> 74854dd5a9fda3df8472d825c10836a5 ./sampling/orientations/orientgridall/data/c48u83.grid.gz\r\n22010d22006\r\n< 9b0413e8b44448f15c5c531c0fa8d430 ./sampling/orientations/orientgridall/data/c48u9.grid.gz\r\n22014c22010\r\n< 2d8048ca9a2550fadbdc41a32dd36a16 ./sampling/orientations/orientgridall/data/c600v.quat.gz\r\n---\r\n> 9b0413e8b44448f15c5c531c0fa8d430 ./sampling/orientations/orientgridall/data/c48u9.grid.gz\r\n22016a22013,22015\r\n> 2d8048ca9a2550fadbdc41a32dd36a16 ./sampling/orientations/orientgridall/data/c600v.quat.gz\r\n> 4bd5d9b7660b6fc927c593a1da8c741a ./sampling/orientations/orientgridall/ExpandSet.cpp\r\n> cb2465e3cd43a183ba43419e62a368b7 ./sampling/relax_scripts/index.dat\r\n22020a22020,22023\r\n> 3326d79c7c8424a808b9a35948c45273 ./sampling/relax_scripts/legacy.beta_nov16.dualspace.txt\r\n> 8dd32c12dc1c4a35543046844cefd9b8 ./sampling/relax_scripts/legacy.beta_nov16.txt\r\n> e8dc1fbf376b833493adec18d0adb8bf ./sampling/relax_scripts/legacy.dualspace.txt\r\n> a7f2dbaee42f61ad35cf1e03c099e770 ./sampling/relax_scripts/legacy.txt\r\n22024a22028,22031\r\n> d268dfb2f025f376d27ff4ee6ee02eaa ./sampling/relax_scripts/no_cst_ramping.beta_nov16.dualspace.txt\r\n> 3981ed4a1acd038f9c98e75c286eab47 ./sampling/relax_scripts/no_cst_ramping.beta_nov16.txt\r\n> 22a355fbd16651c70342a5a729cda066 ./sampling/relax_scripts/no_cst_ramping.dualspace.txt\r\n> 908c78d6b7c228efa23af2c6f0ae9738 ./sampling/relax_scripts/no_cst_ramping.txt\r\n22036,22044d22042\r\n< cb2465e3cd43a183ba43419e62a368b7 ./sampling/relax_scripts/index.dat\r\n< 3326d79c7c8424a808b9a35948c45273 ./sampling/relax_scripts/legacy.beta_nov16.dualspace.txt\r\n< 8dd32c12dc1c4a35543046844cefd9b8 ./sampling/relax_scripts/legacy.beta_nov16.txt\r\n< e8dc1fbf376b833493adec18d0adb8bf ./sampling/relax_scripts/legacy.dualspace.txt\r\n< a7f2dbaee42f61ad35cf1e03c099e770 ./sampling/relax_scripts/legacy.txt\r\n< d268dfb2f025f376d27ff4ee6ee02eaa ./sampling/relax_scripts/no_cst_ramping.beta_nov16.dualspace.txt\r\n< 3981ed4a1acd038f9c98e75c286eab47 ./sampling/relax_scripts/no_cst_ramping.beta_nov16.txt\r\n< 22a355fbd16651c70342a5a729cda066 ./sampling/relax_scripts/no_cst_ramping.dualspace.txt\r\n< 908c78d6b7c228efa23af2c6f0ae9738 ./sampling/relax_scripts/no_cst_ramping.txt\r\n22047,22048d22044\r\n< 058cd87f375faf1ca094eb26154aba79 ./sampling/rna/1jj2.torsions\r\n< 1d84a0ad6266152d7661feab4acda118 ./sampling/rna/1jj2_RNA_jump_library.dat\r\n22050,22058c22046,22047\r\n< 7837cdb321b0ec0bc7510657a6bad5c3 ./sampling/rna/RICHARDSON_RNA09.torsions\r\n< 17eb1372f9edd93b3f0e8799d2977f60 ./sampling/rna/RNA11_filter_all.jump\r\n< 17d71c61da80a35557715856a472eeed ./sampling/rna/RNA11_filter_all.torsions\r\n< d0e1ee07faa7793a3c829f7d09e9a07d ./sampling/rna/RNA11_filter_pucker.jump\r\n< bbedc8c5984a8f992604ab5c147620a1 ./sampling/rna/RNA11_filter_pucker.torsions\r\n< 69e2ba3a5bb145f14f88445349865c60 ./sampling/rna/RNA11_full.jump\r\n< 447844f62671e88c7c3d1b22a5e44628 ./sampling/rna/RNA11_full.torsions\r\n< 33c2bd8651aa66a8cef5845e24beaaef ./sampling/rna/RNA18_HUB_2.154_2.5.jump\r\n< 02fd221964c77dd3dcfdb2c1b716c5eb ./sampling/rna/RNA18_HUB_2.154_2.5.torsions\r\n---\r\n> 1d84a0ad6266152d7661feab4acda118 ./sampling/rna/1jj2_RNA_jump_library.dat\r\n> 058cd87f375faf1ca094eb26154aba79 ./sampling/rna/1jj2.torsions\r\n22096d22084\r\n< 99b7f7c2e8bd3af6cd580c77a449f703 ./sampling/rna/base_pair_steps/general/README\r\n22386a22375\r\n> 99b7f7c2e8bd3af6cd580c77a449f703 ./sampling/rna/base_pair_steps/general/README\r\n22625c22614,22622\r\n< c200df8d78e14d1f3dd79d76086e62b7 ./sampling/rna/submotif/base_pairs/G_GAI.pdb\r\n---\r\n> 7837cdb321b0ec0bc7510657a6bad5c3 ./sampling/rna/RICHARDSON_RNA09.torsions\r\n> 17eb1372f9edd93b3f0e8799d2977f60 ./sampling/rna/RNA11_filter_all.jump\r\n> 17d71c61da80a35557715856a472eeed ./sampling/rna/RNA11_filter_all.torsions\r\n> d0e1ee07faa7793a3c829f7d09e9a07d ./sampling/rna/RNA11_filter_pucker.jump\r\n> bbedc8c5984a8f992604ab5c147620a1 ./sampling/rna/RNA11_filter_pucker.torsions\r\n> 69e2ba3a5bb145f14f88445349865c60 ./sampling/rna/RNA11_full.jump\r\n> 447844f62671e88c7c3d1b22a5e44628 ./sampling/rna/RNA11_full.torsions\r\n> 33c2bd8651aa66a8cef5845e24beaaef ./sampling/rna/RNA18_HUB_2.154_2.5.jump\r\n> 02fd221964c77dd3dcfdb2c1b716c5eb ./sampling/rna/RNA18_HUB_2.154_2.5.torsions\r\n22628a22626\r\n> c200df8d78e14d1f3dd79d76086e62b7 ./sampling/rna/submotif/base_pairs/G_GAI.pdb\r\n22644a22643,22644\r\n> bfeae5081d6202ad71c8394178d20ad1 ./sampling/SASA-angles.dat\r\n> 827067e9a3806ca6f41ffc5b6a77876c ./sampling/SASA-masks.dat\r\n22649d22648\r\n< 3f16ef1a3a335828720affe7f4a95b8c ./sampling/spheres/sphere_12.dat.gz\r\n22650a22650\r\n> 3f16ef1a3a335828720affe7f4a95b8c ./sampling/spheres/sphere_12.dat.gz\r\n22711,22730d22710\r\n< 0eab50f20995eec6e4d636fb0bf4976e ./scoring/ProQ/ProQ2_model.1.linear\r\n< 1b1c69169d45b3ad28e9733f62fff579 ./scoring/ProQ/ProQ2_model.1.linear_retrained_for_rosetta\r\n< c78b532f0bb399b1054d91ff79a689f2 ./scoring/ProQ/ProQ2_model.2.linear\r\n< 8a26e4be50d2a6fa88c987889de213f7 ./scoring/ProQ/ProQ2_model.2.linear_retrained_for_rosetta\r\n< a07596265fd4dcbd8da86e43bfb41dc6 ./scoring/ProQ/ProQ2_model.3.linear\r\n< 5746e07cf65a2e68569d3cc1cef771e6 ./scoring/ProQ/ProQ2_model.3.linear_retrained_for_rosetta\r\n< ab0d15f787c8ac8d5f1e543d2c88fe47 ./scoring/ProQ/ProQ2_model.4.linear\r\n< 3341039e28fc9f147d084794697b391d ./scoring/ProQ/ProQ2_model.4.linear_retrained_for_rosetta\r\n< 3bbac55e95c6a4d38b4810b67963bcfd ./scoring/ProQ/ProQ2_model.5.linear\r\n< 01a7de299589a46358f60286eca822d0 ./scoring/ProQ/ProQ2_model.5.linear_retrained_for_rosetta\r\n< 0fe0e1b3af532f99b4da3a492bf2b57a ./scoring/ProQ/ProQM_model.1.linear\r\n< 3d54814b02d58500b04c4ecce4e07116 ./scoring/ProQ/ProQM_model.1.linear_retrained_for_rosetta\r\n< 1b77236f8fe9de8d594e6f4926fb2def ./scoring/ProQ/ProQM_model.2.linear\r\n< fa9965decc7e2c60b2b0bd7634d4e33c ./scoring/ProQ/ProQM_model.2.linear_retrained_for_rosetta\r\n< 9828dbf5666a9655d23a516ee6f5bdb0 ./scoring/ProQ/ProQM_model.3.linear\r\n< 9df5af8f76389d48d0b9603ac46a0b0e ./scoring/ProQ/ProQM_model.3.linear_retrained_for_rosetta\r\n< bd31a8383548cf9bf1f58856609f4076 ./scoring/ProQ/ProQM_model.4.linear\r\n< cdc21dfb17ff60b108d1b1c516b6d71d ./scoring/ProQ/ProQM_model.4.linear_retrained_for_rosetta\r\n< 5f7faeb8b729d9ebb7b60853efeac1ec ./scoring/ProQ/ProQM_model.5.linear\r\n< 1f76fe78d748f088efb6c0e045f748c2 ./scoring/ProQ/ProQM_model.5.linear_retrained_for_rosetta\r\n22736d22715\r\n< 71230722283633480b49b9eac4ecf4fd ./scoring/electron_density/README.txt\r\n22738a22718\r\n> 71230722283633480b49b9eac4ecf4fd ./scoring/electron_density/README.txt\r\n22741d22720\r\n< a9f67b4f3e9be688fb3d0ae62df295ff ./scoring/epr_deer/DEFAULT.txt\r\n22742a22722\r\n> a9f67b4f3e9be688fb3d0ae62df295ff ./scoring/epr_deer/DEFAULT.txt\r\n22750a22731\r\n> 157394c1ca67c93444b7961332729599 ./scoring/loop_close/6D_potentials/rna/loop_02/potential.bin.gz\r\n22752a22734\r\n> affbfcacb17b2d29cedf29819b1ace93 ./scoring/loop_close/6D_potentials/rna/loop_03/potential.bin.gz\r\n22754a22737\r\n> 5ec24ef9d568dfb0efce583adbf9ec53 ./scoring/loop_close/6D_potentials/rna/loop_04/potential.bin.gz\r\n22756a22740\r\n> ff6b99f7ee681e35ce3a0ef3726a2f8d ./scoring/loop_close/6D_potentials/rna/loop_05/potential.bin.gz\r\n22758a22743\r\n> 11340208c0dd7e1ec450de595b828b1d ./scoring/loop_close/6D_potentials/rna/loop_06/potential.bin.gz\r\n22760a22746\r\n> 79d3226aded06c74a82f05d77ce5648b ./scoring/loop_close/6D_potentials/rna/loop_07/potential.bin.gz\r\n22771a22758,22777\r\n> 0eab50f20995eec6e4d636fb0bf4976e ./scoring/ProQ/ProQ2_model.1.linear\r\n> 1b1c69169d45b3ad28e9733f62fff579 ./scoring/ProQ/ProQ2_model.1.linear_retrained_for_rosetta\r\n> c78b532f0bb399b1054d91ff79a689f2 ./scoring/ProQ/ProQ2_model.2.linear\r\n> 8a26e4be50d2a6fa88c987889de213f7 ./scoring/ProQ/ProQ2_model.2.linear_retrained_for_rosetta\r\n> a07596265fd4dcbd8da86e43bfb41dc6 ./scoring/ProQ/ProQ2_model.3.linear\r\n> 5746e07cf65a2e68569d3cc1cef771e6 ./scoring/ProQ/ProQ2_model.3.linear_retrained_for_rosetta\r\n> ab0d15f787c8ac8d5f1e543d2c88fe47 ./scoring/ProQ/ProQ2_model.4.linear\r\n> 3341039e28fc9f147d084794697b391d ./scoring/ProQ/ProQ2_model.4.linear_retrained_for_rosetta\r\n> 3bbac55e95c6a4d38b4810b67963bcfd ./scoring/ProQ/ProQ2_model.5.linear\r\n> 01a7de299589a46358f60286eca822d0 ./scoring/ProQ/ProQ2_model.5.linear_retrained_for_rosetta\r\n> 0fe0e1b3af532f99b4da3a492bf2b57a ./scoring/ProQ/ProQM_model.1.linear\r\n> 3d54814b02d58500b04c4ecce4e07116 ./scoring/ProQ/ProQM_model.1.linear_retrained_for_rosetta\r\n> 1b77236f8fe9de8d594e6f4926fb2def ./scoring/ProQ/ProQM_model.2.linear\r\n> fa9965decc7e2c60b2b0bd7634d4e33c ./scoring/ProQ/ProQM_model.2.linear_retrained_for_rosetta\r\n> 9828dbf5666a9655d23a516ee6f5bdb0 ./scoring/ProQ/ProQM_model.3.linear\r\n> 9df5af8f76389d48d0b9603ac46a0b0e ./scoring/ProQ/ProQM_model.3.linear_retrained_for_rosetta\r\n> bd31a8383548cf9bf1f58856609f4076 ./scoring/ProQ/ProQM_model.4.linear\r\n> cdc21dfb17ff60b108d1b1c516b6d71d ./scoring/ProQ/ProQM_model.4.linear_retrained_for_rosetta\r\n> 5f7faeb8b729d9ebb7b60853efeac1ec ./scoring/ProQ/ProQM_model.5.linear\r\n> 1f76fe78d748f088efb6c0e045f748c2 ./scoring/ProQ/ProQM_model.5.linear_retrained_for_rosetta\r\n22778d22783\r\n< 5f1ebf0abb707550e1311bd28a5dbf7e ./scoring/rna/chem_map_lores/dms/ade_lores_WC_protected_logstats.txt\r\n22779a22785\r\n> 5f1ebf0abb707550e1311bd28a5dbf7e ./scoring/rna/chem_map_lores/dms/ade_lores_WC_protected_logstats.txt\r\n22787d22792\r\n< b0fd3cdc9caacb7f15fd92021f8747da ./scoring/rna/chem_shift_larmor_d/larmord_noweight.txt\r\n22788a22794\r\n> b0fd3cdc9caacb7f15fd92021f8747da ./scoring/rna/chem_shift_larmor_d/larmord_noweight.txt\r\n22808,22809d22813\r\n< f9045a3baf02361a7f5627c413ab4b30 ./scoring/rna/rnp_atom_vdw_min_distances.txt\r\n< 26b4f508673601c1534a19cd9767a5bc ./scoring/rna/rnp_atom_vdw_min_distances_reformat_MIN.txt\r\n22811c22815,22816\r\n< 3e18fb3bb077c745fd643cdfe2c72960 ./scoring/rna/rnp_backbone_potential.txt\r\n---\r\n> 26b4f508673601c1534a19cd9767a5bc ./scoring/rna/rnp_atom_vdw_min_distances_reformat_MIN.txt\r\n> f9045a3baf02361a7f5627c413ab4b30 ./scoring/rna/rnp_atom_vdw_min_distances.txt\r\n22813c22818\r\n< c8e038ec054bffe44feda832b6fa2c03 ./scoring/rna/rnp_base_pair.txt\r\n---\r\n> 3e18fb3bb077c745fd643cdfe2c72960 ./scoring/rna/rnp_backbone_potential.txt\r\n22815c22820\r\n< c9972c64ff765559df51cdf10dfa5b10 ./scoring/rna/rnp_pair_dist_potential_renorm.txt\r\n---\r\n> c8e038ec054bffe44feda832b6fa2c03 ./scoring/rna/rnp_base_pair.txt\r\n22817c22822\r\n< c4f69457862baad7c29bb10abd36bccb ./scoring/rna/rnp_pair_protein_buried.txt\r\n---\r\n> c9972c64ff765559df51cdf10dfa5b10 ./scoring/rna/rnp_pair_dist_potential_renorm.txt\r\n22819c22824\r\n< a2772738c02b0be2a693a6edd8ba2df7 ./scoring/rna/rnp_pair_protein_notburied.txt\r\n---\r\n> c4f69457862baad7c29bb10abd36bccb ./scoring/rna/rnp_pair_protein_buried.txt\r\n22820a22826\r\n> a2772738c02b0be2a693a6edd8ba2df7 ./scoring/rna/rnp_pair_protein_notburied.txt\r\n22822,22835d22827\r\n< 04edb5414b8baccd045a9804bccaeb37 ./scoring/rna/suite_potentials/Denovo_60/centers.txt\r\n< ab1ad2f916eb69bedb2c029bbfd92100 ./scoring/rna/suite_potentials/Denovo_60/inv_cov.txt\r\n< 5759400c908347f600d7f023b7622750 ./scoring/rna/suite_potentials/README\r\n< 0a8612093a1843ecd28241fd252cf2de ./scoring/rna/suite_potentials/Richardson/centers.txt\r\n< ea9655ff2f2c6f8bf1a1368547bfe843 ./scoring/rna/suite_potentials/Richardson/inv_cov.txt\r\n< c1ffaebc523b62c98c1020b4ae2060c1 ./scoring/rna/suite_potentials/Richardson_refit/centers.txt\r\n< 6830e325aa53103e83426f7b59fc9838 ./scoring/rna/suite_potentials/Richardson_refit/inv_cov.txt\r\n< d558793c65457f372385ad0f7a7c6e91 ./scoring/rna/suite_potentials/Richardson_suites.txt\r\n< 5cc6f7fdc0fee5b4140bb23d3ff07cab ./scoring/rna/suite_potentials/test/1z_6n_2[_bonus/centers.txt\r\n< ea9655ff2f2c6f8bf1a1368547bfe843 ./scoring/rna/suite_potentials/test/1z_6n_2[_bonus/inv_cov.txt\r\n< 0339cc4408bf89ccaf0710359f2611b8 ./scoring/rna/suite_potentials/test/1z_6n_2[_refit_bonus/centers.txt\r\n< 6830e325aa53103e83426f7b59fc9838 ./scoring/rna/suite_potentials/test/1z_6n_2[_refit_bonus/inv_cov.txt\r\n< 44f1dd9d8618d3533080776f0f41f4dc ./scoring/rna/suite_potentials/tna_suite_potential/centers.txt\r\n< e211a52d93316036188421b7ac49c5fe ./scoring/rna/suite_potentials/tna_suite_potential/inv_cov.txt\r\n22846d22837\r\n< af8926f69a68e130b50e1038d5e4741a ./scoring/rna/suiteness_bonus/test/all_suites/centers.txt\r\n22848a22840\r\n> af8926f69a68e130b50e1038d5e4741a ./scoring/rna/suiteness_bonus/test/all_suites/centers.txt\r\n22850a22843,22856\r\n> 04edb5414b8baccd045a9804bccaeb37 ./scoring/rna/suite_potentials/Denovo_60/centers.txt\r\n> ab1ad2f916eb69bedb2c029bbfd92100 ./scoring/rna/suite_potentials/Denovo_60/inv_cov.txt\r\n> 5759400c908347f600d7f023b7622750 ./scoring/rna/suite_potentials/README\r\n> 0a8612093a1843ecd28241fd252cf2de ./scoring/rna/suite_potentials/Richardson/centers.txt\r\n> ea9655ff2f2c6f8bf1a1368547bfe843 ./scoring/rna/suite_potentials/Richardson/inv_cov.txt\r\n> c1ffaebc523b62c98c1020b4ae2060c1 ./scoring/rna/suite_potentials/Richardson_refit/centers.txt\r\n> 6830e325aa53103e83426f7b59fc9838 ./scoring/rna/suite_potentials/Richardson_refit/inv_cov.txt\r\n> d558793c65457f372385ad0f7a7c6e91 ./scoring/rna/suite_potentials/Richardson_suites.txt\r\n> 5cc6f7fdc0fee5b4140bb23d3ff07cab ./scoring/rna/suite_potentials/test/1z_6n_2[_bonus/centers.txt\r\n> ea9655ff2f2c6f8bf1a1368547bfe843 ./scoring/rna/suite_potentials/test/1z_6n_2[_bonus/inv_cov.txt\r\n> 0339cc4408bf89ccaf0710359f2611b8 ./scoring/rna/suite_potentials/test/1z_6n_2[_refit_bonus/centers.txt\r\n> 6830e325aa53103e83426f7b59fc9838 ./scoring/rna/suite_potentials/test/1z_6n_2[_refit_bonus/inv_cov.txt\r\n> 44f1dd9d8618d3533080776f0f41f4dc ./scoring/rna/suite_potentials/tna_suite_potential/centers.txt\r\n> e211a52d93316036188421b7ac49c5fe ./scoring/rna/suite_potentials/tna_suite_potential/inv_cov.txt\r\n22873d22878\r\n< 26a45a2ee6efac6b8c00c36ca4b7f19a ./scoring/rna/torsion_potentials/FINAL_Mar_24_2010_new_delta_zeta_chi/chi_north_potential.txt\r\n22876c22881\r\n< 2a2ccc430956224f9d75ee58972cd4cb ./scoring/rna/torsion_potentials/FINAL_Mar_24_2010_new_delta_zeta_chi/chi_south_potential.txt\r\n---\r\n> 26a45a2ee6efac6b8c00c36ca4b7f19a ./scoring/rna/torsion_potentials/FINAL_Mar_24_2010_new_delta_zeta_chi/chi_north_potential.txt\r\n22878a22884\r\n> 2a2ccc430956224f9d75ee58972cd4cb ./scoring/rna/torsion_potentials/FINAL_Mar_24_2010_new_delta_zeta_chi/chi_south_potential.txt\r\n22891,22947d22896\r\n< 36c8b083d72a7051a1db7ced136f02ce ./scoring/rna/torsion_potentials/RNA09_based_2012_new/alpha_potential.txt\r\n< e9390322361271fa6c44ca787b48407f ./scoring/rna/torsion_potentials/RNA09_based_2012_new/beta_potential.txt\r\n< 7a2233b6c32afba8541a25f1ad0606e7 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/chi_purine_north_potential.txt\r\n< 4e2b9fc69873dd235534d56e4e9ee078 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/chi_purine_south_potential.txt\r\n< 59640e2758015d77642c8bdbedd6aaa1 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/chi_pyrimidine_north_potential.txt\r\n< 27bf6063953ccd890b3eaaef98e1b0fc ./scoring/rna/torsion_potentials/RNA09_based_2012_new/chi_pyrimidine_south_potential.txt\r\n< b5bc0921990bf8214ac1c2b9b91f9280 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/delta_north_potential.txt\r\n< 0060de0ad36ce4a123d266074325773d ./scoring/rna/torsion_potentials/RNA09_based_2012_new/delta_south_potential.txt\r\n< c61bf2161bf5674a0fd3f1948aad797c ./scoring/rna/torsion_potentials/RNA09_based_2012_new/epsilon_north_potential.txt\r\n< c835c60e6f01055d17b3d6a947903152 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/epsilon_south_potential.txt\r\n< 741f37b26005c914bf4d5e188c4b407b ./scoring/rna/torsion_potentials/RNA09_based_2012_new/gamma_potential.txt\r\n< 3485a2c66c1836824a05ad27e824190d ./scoring/rna/torsion_potentials/RNA09_based_2012_new/nu1_north_potential.txt\r\n< 2c6a144742a3a4b7525b003114736644 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/nu1_south_potential.txt\r\n< 876e5b9f2f327ec0b0472c465a103e11 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/nu2_north_potential.txt\r\n< 54efe1be760b3e044de9ad1a3f4de085 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/nu2_south_potential.txt\r\n< 1598da488a538c9db3ef15353703c49c ./scoring/rna/torsion_potentials/RNA09_based_2012_new/o2h_north_potential.txt\r\n< 4f403e9982b5b9845332655828c2ca9d ./scoring/rna/torsion_potentials/RNA09_based_2012_new/o2h_south_potential.txt\r\n< 93dd8a2e813b8007f5f914874f487741 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/zeta_alpha_ap_potential.txt\r\n< e6aeeab7b0e0f4fcf26dc05b2c7b60a2 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/zeta_alpha_sc_minus_potential.txt\r\n< e375a3e0e254dd3b22d0e4ec944a1cc9 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/zeta_alpha_sc_plus_potential.txt\r\n< 8b5990d9722fe8d3528d7f15930fd6ae ./scoring/rna/torsion_potentials/RNA11_based_new/alpha_potential.txt\r\n< dbeab9e6b8c2d8de541e3238920bf3e4 ./scoring/rna/torsion_potentials/RNA11_based_new/beta_potential.txt\r\n< 95a51c2087dbaaf5a8aeed21c7eeb021 ./scoring/rna/torsion_potentials/RNA11_based_new/chi_purine_north_potential.txt\r\n< 8a68f48db288a6ef183917cf12bdd18e ./scoring/rna/torsion_potentials/RNA11_based_new/chi_purine_south_potential.txt\r\n< 3a77bdb9dc669965e503ea9e574d3866 ./scoring/rna/torsion_potentials/RNA11_based_new/chi_pyrimidine_north_potential.txt\r\n< f8b207b0c102d1f1aee1eb471747cf00 ./scoring/rna/torsion_potentials/RNA11_based_new/chi_pyrimidine_south_potential.txt\r\n< 58b41a69a02bfd1659838bfcef62e857 ./scoring/rna/torsion_potentials/RNA11_based_new/delta_north_potential.txt\r\n< 050dbfd7d05b5ba4e46116b2ed1e89ee ./scoring/rna/torsion_potentials/RNA11_based_new/delta_south_potential.txt\r\n< b056776950c4736f1e374df7b4d70fd4 ./scoring/rna/torsion_potentials/RNA11_based_new/epsilon_north_potential.txt\r\n< 6d100d8b9397ae140b4584b9e9a74ff0 ./scoring/rna/torsion_potentials/RNA11_based_new/epsilon_south_potential.txt\r\n< bc2dc59e142b5e9452bf60b45d3bafcd ./scoring/rna/torsion_potentials/RNA11_based_new/gamma_potential.txt\r\n< 3485a2c66c1836824a05ad27e824190d ./scoring/rna/torsion_potentials/RNA11_based_new/nu1_north_potential.txt\r\n< 2c6a144742a3a4b7525b003114736644 ./scoring/rna/torsion_potentials/RNA11_based_new/nu1_south_potential.txt\r\n< 876e5b9f2f327ec0b0472c465a103e11 ./scoring/rna/torsion_potentials/RNA11_based_new/nu2_north_potential.txt\r\n< 54efe1be760b3e044de9ad1a3f4de085 ./scoring/rna/torsion_potentials/RNA11_based_new/nu2_south_potential.txt\r\n< faef7c8622a5c10525dfc5910d233ff4 ./scoring/rna/torsion_potentials/RNA11_based_new/o2h_north_potential.txt\r\n< 4d6db9408bd97ccbee0d8e08bafeb55e ./scoring/rna/torsion_potentials/RNA11_based_new/o2h_south_potential.txt\r\n< 030c9d8a4f34539d31bc740ab4d3239f ./scoring/rna/torsion_potentials/RNA11_based_new/zeta_alpha_ap_potential.txt\r\n< ae37b0a4ed5d523036926db2df765447 ./scoring/rna/torsion_potentials/RNA11_based_new/zeta_alpha_sc_minus_potential.txt\r\n< 220bffa127c962f05708e41b1d0b39d1 ./scoring/rna/torsion_potentials/RNA11_based_new/zeta_alpha_sc_plus_potential.txt\r\n< c8b383b9af8cc624a86ba35db1868ea2 ./scoring/rna/torsion_potentials/ps2009/alpha_potential.txt\r\n< 1aacf82605d2f5778b2a0520b497a308 ./scoring/rna/torsion_potentials/ps2009/beta_potential.txt\r\n< 6ebfb94cee1ba02a4cd4638e7ae3627d ./scoring/rna/torsion_potentials/ps2009/chi_north_potential.txt\r\n< b6897570a2fb1c2df99be69915776625 ./scoring/rna/torsion_potentials/ps2009/chi_south_potential.txt\r\n< 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/delta_north_potential.txt\r\n< 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/delta_south_potential.txt\r\n< 30603f6e9857a60bb58876926873921f ./scoring/rna/torsion_potentials/ps2009/epsilon_north_potential.txt\r\n< be6ff7dc8fce85e70b6f3106953094a1 ./scoring/rna/torsion_potentials/ps2009/epsilon_south_potential.txt\r\n< c959a88181e6c60efe0eae3a68b93bcf ./scoring/rna/torsion_potentials/ps2009/gamma_potential.txt\r\n< 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/nu1_north_potential.txt\r\n< 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/nu1_south_potential.txt\r\n< 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/nu2_north_potential.txt\r\n< 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/nu2_south_potential.txt\r\n< 22be9a37cebf82e2484a16ffc3f6e723 ./scoring/rna/torsion_potentials/ps2009/zeta_alpha_ap_potential.txt\r\n< cbf7cf1885fe65a3626b845eda1814c5 ./scoring/rna/torsion_potentials/ps2009/zeta_alpha_sc_minus_potential.txt\r\n< 98e3b5e3e35a95eaf7f2d96cbfc63367 ./scoring/rna/torsion_potentials/ps2009/zeta_alpha_sc_plus_potential.txt\r\n< 8bf650654bb6c7e30d2b1d086e948f1a ./scoring/rna/torsion_potentials/ps_03242010/README.txt\r\n22962a22912\r\n> 8bf650654bb6c7e30d2b1d086e948f1a ./scoring/rna/torsion_potentials/ps_03242010/README.txt\r\n22983a22934,22949\r\n> c8b383b9af8cc624a86ba35db1868ea2 ./scoring/rna/torsion_potentials/ps2009/alpha_potential.txt\r\n> 1aacf82605d2f5778b2a0520b497a308 ./scoring/rna/torsion_potentials/ps2009/beta_potential.txt\r\n> 6ebfb94cee1ba02a4cd4638e7ae3627d ./scoring/rna/torsion_potentials/ps2009/chi_north_potential.txt\r\n> b6897570a2fb1c2df99be69915776625 ./scoring/rna/torsion_potentials/ps2009/chi_south_potential.txt\r\n> 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/delta_north_potential.txt\r\n> 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/delta_south_potential.txt\r\n> 30603f6e9857a60bb58876926873921f ./scoring/rna/torsion_potentials/ps2009/epsilon_north_potential.txt\r\n> be6ff7dc8fce85e70b6f3106953094a1 ./scoring/rna/torsion_potentials/ps2009/epsilon_south_potential.txt\r\n> c959a88181e6c60efe0eae3a68b93bcf ./scoring/rna/torsion_potentials/ps2009/gamma_potential.txt\r\n> 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/nu1_north_potential.txt\r\n> 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/nu1_south_potential.txt\r\n> 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/nu2_north_potential.txt\r\n> 59d120ebc1eb8801f0542e327c050dcb ./scoring/rna/torsion_potentials/ps2009/nu2_south_potential.txt\r\n> 22be9a37cebf82e2484a16ffc3f6e723 ./scoring/rna/torsion_potentials/ps2009/zeta_alpha_ap_potential.txt\r\n> cbf7cf1885fe65a3626b845eda1814c5 ./scoring/rna/torsion_potentials/ps2009/zeta_alpha_sc_minus_potential.txt\r\n> 98e3b5e3e35a95eaf7f2d96cbfc63367 ./scoring/rna/torsion_potentials/ps2009/zeta_alpha_sc_plus_potential.txt\r\n23015a22982,23021\r\n> 36c8b083d72a7051a1db7ced136f02ce ./scoring/rna/torsion_potentials/RNA09_based_2012_new/alpha_potential.txt\r\n> e9390322361271fa6c44ca787b48407f ./scoring/rna/torsion_potentials/RNA09_based_2012_new/beta_potential.txt\r\n> 7a2233b6c32afba8541a25f1ad0606e7 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/chi_purine_north_potential.txt\r\n> 4e2b9fc69873dd235534d56e4e9ee078 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/chi_purine_south_potential.txt\r\n> 59640e2758015d77642c8bdbedd6aaa1 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/chi_pyrimidine_north_potential.txt\r\n> 27bf6063953ccd890b3eaaef98e1b0fc ./scoring/rna/torsion_potentials/RNA09_based_2012_new/chi_pyrimidine_south_potential.txt\r\n> b5bc0921990bf8214ac1c2b9b91f9280 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/delta_north_potential.txt\r\n> 0060de0ad36ce4a123d266074325773d ./scoring/rna/torsion_potentials/RNA09_based_2012_new/delta_south_potential.txt\r\n> c61bf2161bf5674a0fd3f1948aad797c ./scoring/rna/torsion_potentials/RNA09_based_2012_new/epsilon_north_potential.txt\r\n> c835c60e6f01055d17b3d6a947903152 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/epsilon_south_potential.txt\r\n> 741f37b26005c914bf4d5e188c4b407b ./scoring/rna/torsion_potentials/RNA09_based_2012_new/gamma_potential.txt\r\n> 3485a2c66c1836824a05ad27e824190d ./scoring/rna/torsion_potentials/RNA09_based_2012_new/nu1_north_potential.txt\r\n> 2c6a144742a3a4b7525b003114736644 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/nu1_south_potential.txt\r\n> 876e5b9f2f327ec0b0472c465a103e11 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/nu2_north_potential.txt\r\n> 54efe1be760b3e044de9ad1a3f4de085 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/nu2_south_potential.txt\r\n> 1598da488a538c9db3ef15353703c49c ./scoring/rna/torsion_potentials/RNA09_based_2012_new/o2h_north_potential.txt\r\n> 4f403e9982b5b9845332655828c2ca9d ./scoring/rna/torsion_potentials/RNA09_based_2012_new/o2h_south_potential.txt\r\n> 93dd8a2e813b8007f5f914874f487741 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/zeta_alpha_ap_potential.txt\r\n> e6aeeab7b0e0f4fcf26dc05b2c7b60a2 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/zeta_alpha_sc_minus_potential.txt\r\n> e375a3e0e254dd3b22d0e4ec944a1cc9 ./scoring/rna/torsion_potentials/RNA09_based_2012_new/zeta_alpha_sc_plus_potential.txt\r\n> 8b5990d9722fe8d3528d7f15930fd6ae ./scoring/rna/torsion_potentials/RNA11_based_new/alpha_potential.txt\r\n> dbeab9e6b8c2d8de541e3238920bf3e4 ./scoring/rna/torsion_potentials/RNA11_based_new/beta_potential.txt\r\n> 95a51c2087dbaaf5a8aeed21c7eeb021 ./scoring/rna/torsion_potentials/RNA11_based_new/chi_purine_north_potential.txt\r\n> 8a68f48db288a6ef183917cf12bdd18e ./scoring/rna/torsion_potentials/RNA11_based_new/chi_purine_south_potential.txt\r\n> 3a77bdb9dc669965e503ea9e574d3866 ./scoring/rna/torsion_potentials/RNA11_based_new/chi_pyrimidine_north_potential.txt\r\n> f8b207b0c102d1f1aee1eb471747cf00 ./scoring/rna/torsion_potentials/RNA11_based_new/chi_pyrimidine_south_potential.txt\r\n> 58b41a69a02bfd1659838bfcef62e857 ./scoring/rna/torsion_potentials/RNA11_based_new/delta_north_potential.txt\r\n> 050dbfd7d05b5ba4e46116b2ed1e89ee ./scoring/rna/torsion_potentials/RNA11_based_new/delta_south_potential.txt\r\n> b056776950c4736f1e374df7b4d70fd4 ./scoring/rna/torsion_potentials/RNA11_based_new/epsilon_north_potential.txt\r\n> 6d100d8b9397ae140b4584b9e9a74ff0 ./scoring/rna/torsion_potentials/RNA11_based_new/epsilon_south_potential.txt\r\n> bc2dc59e142b5e9452bf60b45d3bafcd ./scoring/rna/torsion_potentials/RNA11_based_new/gamma_potential.txt\r\n> 3485a2c66c1836824a05ad27e824190d ./scoring/rna/torsion_potentials/RNA11_based_new/nu1_north_potential.txt\r\n> 2c6a144742a3a4b7525b003114736644 ./scoring/rna/torsion_potentials/RNA11_based_new/nu1_south_potential.txt\r\n> 876e5b9f2f327ec0b0472c465a103e11 ./scoring/rna/torsion_potentials/RNA11_based_new/nu2_north_potential.txt\r\n> 54efe1be760b3e044de9ad1a3f4de085 ./scoring/rna/torsion_potentials/RNA11_based_new/nu2_south_potential.txt\r\n> faef7c8622a5c10525dfc5910d233ff4 ./scoring/rna/torsion_potentials/RNA11_based_new/o2h_north_potential.txt\r\n> 4d6db9408bd97ccbee0d8e08bafeb55e ./scoring/rna/torsion_potentials/RNA11_based_new/o2h_south_potential.txt\r\n> 030c9d8a4f34539d31bc740ab4d3239f ./scoring/rna/torsion_potentials/RNA11_based_new/zeta_alpha_ap_potential.txt\r\n> ae37b0a4ed5d523036926db2df765447 ./scoring/rna/torsion_potentials/RNA11_based_new/zeta_alpha_sc_minus_potential.txt\r\n> 220bffa127c962f05708e41b1d0b39d1 ./scoring/rna/torsion_potentials/RNA11_based_new/zeta_alpha_sc_plus_potential.txt\r\n23041,23092d23046\r\n< ffc59659040e28a32c96d0591748bf34 ./scoring/score_functions/DDPscore/interface_ddp_score.txt\r\n< a92ea0459f04a4b57014fd42ec6903ad ./scoring/score_functions/EnvPairPotential/cbeta_den.txt\r\n< c88326ee8ae1439943c7d73da0212111 ./scoring/score_functions/EnvPairPotential/cenpack_log.txt\r\n< 10ab8f3057c520686c60f02bd466c995 ./scoring/score_functions/EnvPairPotential/env_log.txt\r\n< 1b587cc938e07b8f39f8cbf4b89cb072 ./scoring/score_functions/EnvPairPotential/pair_log.txt\r\n< 6ead1d93543251077cae07901e0b4e18 ./scoring/score_functions/InterchainPotential/interchain_env_log.txt\r\n< 46a7774006cddf280bff3df87ad41260 ./scoring/score_functions/InterchainPotential/interchain_pair_log.txt\r\n< 81d9606233578fa646da1ac57572981a ./scoring/score_functions/MembranePotential/AsymEZ_CB.txt\r\n< f0e5915e4f30db715405e80bbb69ac75 ./scoring/score_functions/MembranePotential/AsymEZ_CB_Derivs.txt\r\n< d215240467bb106d9487926cbfc0d200 ./scoring/score_functions/MembranePotential/AsymEZ_CG.txt\r\n< 0358edae07a5897a0f2ca1c8826907c1 ./scoring/score_functions/MembranePotential/AsymEZ_CG_Derivs.txt\r\n< 26fcb8cba9f293491c34990bea5b33e3 ./scoring/score_functions/MembranePotential/CEN10_Menv_smooth_log.txt\r\n< 4765e6290c39ce35463db5961e133d18 ./scoring/score_functions/MembranePotential/CEN10_mem_env_log.txt\r\n< 0fc7c0849a9dea70e44a79347f938afc ./scoring/score_functions/MembranePotential/CEN6_mem_env_log.txt\r\n< f956e8ac1a4dbadaefe5d69891c7896e ./scoring/score_functions/MembranePotential/ELazaridis_cen_polynom_table.txt\r\n< fe3769ce8b450c89b620c05f9b04a106 ./scoring/score_functions/MembranePotential/ELazaridis_polynom_table.txt\r\n< dcdf1cb689fd5108c99a78ebfd66e4eb ./scoring/score_functions/MembranePotential/elazar_spline_mp_span_ins_fa.txt\r\n< 953ff23b1b30bf4608f5b05b67ed3eab ./scoring/score_functions/MembranePotential/mem_env_log.txt\r\n< a5209b0b2d8a76f8898e7f2dac443499 ./scoring/score_functions/MembranePotential/mem_pair_log.txt\r\n< 4a80bcb58402b65a00ce48944563aa92 ./scoring/score_functions/MembranePotential/memcbeta_den.txt\r\n< 3b6852a184ce67e5f9cc8ddf57171099 ./scoring/score_functions/MembranePotential/spline_test_cen.txt\r\n< fe84df98959bb356ff1bfa50c00fc88b ./scoring/score_functions/MembranePotential/spline_test_fa.txt\r\n< eaa4499c741b2101b1aa0d911c3f374c ./scoring/score_functions/NV/neighbor_vector_score.histogram\r\n< becdd56df1ac23c90d0536326fcb2989 ./scoring/score_functions/P_AA_SS_cen6/P_AA_SS.txt\r\n< 9d2b10c3e4b248a2a892136c8bc15d6a ./scoring/score_functions/P_AA_SS_cen6/P_AA_SS_cen6.txt\r\n< 6d7e2505c3e46a15e0da459570176401 ./scoring/score_functions/P_AA_pp/P_AA\r\n< dbde0178006bd238ad889a09ab7d756f ./scoring/score_functions/P_AA_pp/P_AA_n\r\n< 4ba7da8cd9c178f99689828aafb1ee71 ./scoring/score_functions/P_AA_pp/P_AA_pp\r\n< 2c15072c1fb1a781e51bb9d2771a97b5 ./scoring/score_functions/P_AA_pp/P_AA_pp_08.2009\r\n< 48acd1dc343d0cd660719368f4d7ad59 ./scoring/score_functions/P_AA_pp/Paa\r\n< 826c68782f2b8a8b128a0a5f9478f085 ./scoring/score_functions/P_AA_pp/Paa_n\r\n< 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/10deg/AcademicLicensePropensityMap.txt\r\n< b1e15266c861948f12ca9aa5979218ae ./scoring/score_functions/P_AA_pp/shapovalov/10deg/Taken.From.txt\r\n< 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa131/AcademicLicensePropensityMap.txt\r\n< 1c24030a571145ec8febc3303611dacd ./scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa131/a20.prop\r\n< 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa50/AcademicLicensePropensityMap.txt\r\n< 72c92fee7f8406bece7670f96bf43171 ./scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa50/a20.prop\r\n< 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/AcademicLicensePropensityMap.txt\r\n< f682494cd608556260b5f052aa87f9b9 ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/Taken.From.txt\r\n< 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/kappa131/AcademicLicensePropensityMap.txt\r\n< 9aac30c61fbedc7a523acad0f34d5284 ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/kappa131/a20.prop\r\n< 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/kappa50/AcademicLicensePropensityMap.txt\r\n< aae8f09f541e7444aa2f1bbe76c7388b ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/kappa50/a20.prop\r\n< 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/AcademicLicensePropensityMap.txt\r\n< 9fca8b2c5743394d96f5e5113a56fa17 ./scoring/score_functions/P_AA_pp/shapovalov/argumentsExample.shapovalov.txt\r\n< 59cc218d3aa4a959d548d4be40d1c348 ./scoring/score_functions/PairEPotential/pdb_pair_stats_fine\r\n< b38dd32df507671463d41f82a1cf7062 ./scoring/score_functions/SecondaryStructurePotential/phi.theta.36.HS.resmooth\r\n< e09326496a7d664bb8174736f5f2ce5f ./scoring/score_functions/SecondaryStructurePotential/phi.theta.36.SS.resmooth\r\n< 6212a94d503152d8d52db10ebd31f9cf ./scoring/score_functions/SecondaryStructurePotential/rsigma_dot.txt\r\n< c6dccb2e49c05862d1e9ddbfce25abe3 ./scoring/score_functions/SurfacePotential/average_hASA_by_res_and_neighbor.txt\r\n< b1a432b3b104d221498d5e3333123511 ./scoring/score_functions/SurfacePotential/hpatch_score.txt\r\n< 1e73fba906f4aa4a62680420c02adb6c ./scoring/score_functions/SurfacePotential/surface_score.txt\r\n23104a23059\r\n> 583ba34c3b6710de7844a86be8e50da5 ./scoring/score_functions/bondlength_bondangle_beta/default-improper.txt\r\n23110d23064\r\n< 583ba34c3b6710de7844a86be8e50da5 ./scoring/score_functions/bondlength_bondangle_beta/default-improper.txt\r\n23122d23075\r\n< c5532c9df532aed9b7a36c089b97b595 ./scoring/score_functions/carbon_hbond/ch_o_bond_potential.dat\r\n23123a23077\r\n> c5532c9df532aed9b7a36c089b97b595 ./scoring/score_functions/carbon_hbond/ch_o_bond_potential.dat\r\n23137,23138c23091\r\n< c7ddfac4b8fbad22b185a1d116af2a66 ./scoring/score_functions/disulfides/centroid_CaCbCbCa_dihedral_score\r\n< f3c368eabd4f6ac108c47a474005e692 ./scoring/score_functions/disulfides/centroid_CaCbCb_angle_score\r\n---\r\n> ffc59659040e28a32c96d0591748bf34 ./scoring/score_functions/DDPscore/interface_ddp_score.txt\r\n23139a23093,23094\r\n> f3c368eabd4f6ac108c47a474005e692 ./scoring/score_functions/disulfides/centroid_CaCbCb_angle_score\r\n> c7ddfac4b8fbad22b185a1d116af2a66 ./scoring/score_functions/disulfides/centroid_CaCbCbCa_dihedral_score\r\n23145a23101,23104\r\n> a92ea0459f04a4b57014fd42ec6903ad ./scoring/score_functions/EnvPairPotential/cbeta_den.txt\r\n> c88326ee8ae1439943c7d73da0212111 ./scoring/score_functions/EnvPairPotential/cenpack_log.txt\r\n> 10ab8f3057c520686c60f02bd466c995 ./scoring/score_functions/EnvPairPotential/env_log.txt\r\n> 1b587cc938e07b8f39f8cbf4b89cb072 ./scoring/score_functions/EnvPairPotential/pair_log.txt\r\n23164,23193d23122\r\n< 1c9064adf9530e4d9d7bbc9bd93974d3 ./scoring/score_functions/facts/GB_AA_PLACEHOLDER.params\r\n< 049dc8783b26f13fa1e99a87af22a2bd ./scoring/score_functions/facts/GDP.params\r\n< 3eda2aca057086c42a271d37e4b2ae85 ./scoring/score_functions/facts/GLN.params\r\n< 6b1f26f4f5f2723de060402f1cb5d4f5 ./scoring/score_functions/facts/GLU.params\r\n< d5643a68ef20119a93b78f7f75d43610 ./scoring/score_functions/facts/GLU_mod.params\r\n< e1a2e2fbe63401cd9662a5342cd1d4d1 ./scoring/score_functions/facts/GLY.params\r\n< e1a2e2fbe63401cd9662a5342cd1d4d1 ./scoring/score_functions/facts/GLY_org.params\r\n< 11a779981b3170b68cc7c1f8570deec6 ./scoring/score_functions/facts/GNP.params\r\n< 107356d673146578aadcfc0e38c02168 ./scoring/score_functions/facts/GTP.params\r\n< 2c898598ab7ed3e8297ccb5d3dece141 ./scoring/score_functions/facts/GUA.params\r\n< 04c6d14ed3cbbe80db3e6325095f0cb8 ./scoring/score_functions/facts/HIS.params\r\n< dbe3daf01b4f5973a4542d877be1b31d ./scoring/score_functions/facts/HIS_D.params\r\n< 94fc61c2f0d4fccf0cda0f52e5ddcda9 ./scoring/score_functions/facts/ILE.params\r\n< 11b92590398223e3afb5cabab589075a ./scoring/score_functions/facts/LEU.params\r\n< 0797646635f0307a411dd8b072feab88 ./scoring/score_functions/facts/LYS.params\r\n< 582184f61af20eed25e22d35d370e698 ./scoring/score_functions/facts/LYX.params\r\n< 517268df7e9ba6407dde376cbab25ea6 ./scoring/score_functions/facts/MET.params\r\n< ab1797ab3533e827da69cf9541e5d367 ./scoring/score_functions/facts/PHE.params\r\n< 6289e6f3378223139039787e208c6835 ./scoring/score_functions/facts/PRO.params\r\n< 41d56219b637d6b1ecdd5b35f6aa6c3c ./scoring/score_functions/facts/SER.params\r\n< 0a02f2045a7e81696a54bfb9b8a780bc ./scoring/score_functions/facts/SUCK.params\r\n< cd708968535356deb4caa9b56b9b934b ./scoring/score_functions/facts/THR.params\r\n< 692d9114b400fc4a3b9588754cfc9a1a ./scoring/score_functions/facts/THY.params\r\n< 7370677253f34f8f68e228fe17ad0165 ./scoring/score_functions/facts/TP3.params\r\n< ac6ea73705ea5702479aa0a852e91f38 ./scoring/score_functions/facts/TP5.params\r\n< 9441483d072334b61e0a74a146d76f24 ./scoring/score_functions/facts/TRP.params\r\n< e359e69757c97244ea7ed4d32e38e849 ./scoring/score_functions/facts/TYR.params\r\n< 616c96597e59781878ff1755a3d802b0 ./scoring/score_functions/facts/VAL.params\r\n< 94a3f6d337bd3c8a4c7e4ed24be6805a ./scoring/score_functions/facts/VRT.params\r\n< 05fe5ac33b0d7759d3fea1eada75e728 ./scoring/score_functions/facts/VRT1.params\r\n23215d23143\r\n< 04c6d14ed3cbbe80db3e6325095f0cb8 ./scoring/score_functions/facts/eff/HIS.params\r\n23216a23145\r\n> 04c6d14ed3cbbe80db3e6325095f0cb8 ./scoring/score_functions/facts/eff/HIS.params\r\n23233d23161\r\n< 94a3f6d337bd3c8a4c7e4ed24be6805a ./scoring/score_functions/facts/eff/VRT.params\r\n23234a23163,23180\r\n> 94a3f6d337bd3c8a4c7e4ed24be6805a ./scoring/score_functions/facts/eff/VRT.params\r\n> 1c9064adf9530e4d9d7bbc9bd93974d3 ./scoring/score_functions/facts/GB_AA_PLACEHOLDER.params\r\n> 049dc8783b26f13fa1e99a87af22a2bd ./scoring/score_functions/facts/GDP.params\r\n> 3eda2aca057086c42a271d37e4b2ae85 ./scoring/score_functions/facts/GLN.params\r\n> d5643a68ef20119a93b78f7f75d43610 ./scoring/score_functions/facts/GLU_mod.params\r\n> 6b1f26f4f5f2723de060402f1cb5d4f5 ./scoring/score_functions/facts/GLU.params\r\n> e1a2e2fbe63401cd9662a5342cd1d4d1 ./scoring/score_functions/facts/GLY_org.params\r\n> e1a2e2fbe63401cd9662a5342cd1d4d1 ./scoring/score_functions/facts/GLY.params\r\n> 11a779981b3170b68cc7c1f8570deec6 ./scoring/score_functions/facts/GNP.params\r\n> 107356d673146578aadcfc0e38c02168 ./scoring/score_functions/facts/GTP.params\r\n> 2c898598ab7ed3e8297ccb5d3dece141 ./scoring/score_functions/facts/GUA.params\r\n> dbe3daf01b4f5973a4542d877be1b31d ./scoring/score_functions/facts/HIS_D.params\r\n> 04c6d14ed3cbbe80db3e6325095f0cb8 ./scoring/score_functions/facts/HIS.params\r\n> 94fc61c2f0d4fccf0cda0f52e5ddcda9 ./scoring/score_functions/facts/ILE.params\r\n> 11b92590398223e3afb5cabab589075a ./scoring/score_functions/facts/LEU.params\r\n> 0797646635f0307a411dd8b072feab88 ./scoring/score_functions/facts/LYS.params\r\n> 582184f61af20eed25e22d35d370e698 ./scoring/score_functions/facts/LYX.params\r\n> 517268df7e9ba6407dde376cbab25ea6 ./scoring/score_functions/facts/MET.params\r\n23250d23195\r\n< 83861ca865e259de03fa813e8667f074 ./scoring/score_functions/facts/modified/GLU.params\r\n23251a23197\r\n> 83861ca865e259de03fa813e8667f074 ./scoring/score_functions/facts/modified/GLU.params\r\n23256d23201\r\n< f5c2c99a16d40e87553286f46ed8f8de ./scoring/score_functions/facts/modified/HIS.params\r\n23257a23203\r\n> f5c2c99a16d40e87553286f46ed8f8de ./scoring/score_functions/facts/modified/HIS.params\r\n23274d23219\r\n< 94a3f6d337bd3c8a4c7e4ed24be6805a ./scoring/score_functions/facts/modified/VRT.params\r\n23275a23221,23225\r\n> 94a3f6d337bd3c8a4c7e4ed24be6805a ./scoring/score_functions/facts/modified/VRT.params\r\n> ab1797ab3533e827da69cf9541e5d367 ./scoring/score_functions/facts/PHE.params\r\n> 6289e6f3378223139039787e208c6835 ./scoring/score_functions/facts/PRO.params\r\n> 41d56219b637d6b1ecdd5b35f6aa6c3c ./scoring/score_functions/facts/SER.params\r\n> 0a02f2045a7e81696a54bfb9b8a780bc ./scoring/score_functions/facts/SUCK.params\r\n23291d23240\r\n< 83861ca865e259de03fa813e8667f074 ./scoring/score_functions/facts/test/GLU.params\r\n23293c23242\r\n< e1a2e2fbe63401cd9662a5342cd1d4d1 ./scoring/score_functions/facts/test/GLY.params\r\n---\r\n> 83861ca865e259de03fa813e8667f074 ./scoring/score_functions/facts/test/GLU.params\r\n23294a23244\r\n> e1a2e2fbe63401cd9662a5342cd1d4d1 ./scoring/score_functions/facts/test/GLY.params\r\n23298d23247\r\n< 04c6d14ed3cbbe80db3e6325095f0cb8 ./scoring/score_functions/facts/test/HIS.params\r\n23299a23249\r\n> 04c6d14ed3cbbe80db3e6325095f0cb8 ./scoring/score_functions/facts/test/HIS.params\r\n23316d23265\r\n< 94a3f6d337bd3c8a4c7e4ed24be6805a ./scoring/score_functions/facts/test/VRT.params\r\n23317a23267,23276\r\n> 94a3f6d337bd3c8a4c7e4ed24be6805a ./scoring/score_functions/facts/test/VRT.params\r\n> cd708968535356deb4caa9b56b9b934b ./scoring/score_functions/facts/THR.params\r\n> 692d9114b400fc4a3b9588754cfc9a1a ./scoring/score_functions/facts/THY.params\r\n> 7370677253f34f8f68e228fe17ad0165 ./scoring/score_functions/facts/TP3.params\r\n> ac6ea73705ea5702479aa0a852e91f38 ./scoring/score_functions/facts/TP5.params\r\n> 9441483d072334b61e0a74a146d76f24 ./scoring/score_functions/facts/TRP.params\r\n> e359e69757c97244ea7ed4d32e38e849 ./scoring/score_functions/facts/TYR.params\r\n> 616c96597e59781878ff1755a3d802b0 ./scoring/score_functions/facts/VAL.params\r\n> 05fe5ac33b0d7759d3fea1eada75e728 ./scoring/score_functions/facts/VRT1.params\r\n> 94a3f6d337bd3c8a4c7e4ed24be6805a ./scoring/score_functions/facts/VRT.params\r\n23324d23282\r\n< e92edbccceec88617fa7cd4f1d1d82f4 ./scoring/score_functions/hbonds/.gitignore\r\n23329a23288\r\n> c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/BBasSC_params/HBondWeightType.csv\r\n23332d23290\r\n< c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/BBasSC_params/HBondWeightType.csv\r\n23336,23358d23293\r\n< e86fd39b2d1e0d9f6a6cea7da797a61e ./scoring/score_functions/hbonds/His_Phil_fix/HBAccChemType.csv\r\n< 58b0399dfad260e4d83f9e4ffdd6e79c ./scoring/score_functions/hbonds/His_Phil_fix/HBAccHybridization.csv\r\n< 6e9cf337ed6cfe95910c436f9b1f2027 ./scoring/score_functions/hbonds/His_Phil_fix/HBDonChemType.csv\r\n< 610665b2060ab7849fc7adb31692cf45 ./scoring/score_functions/hbonds/His_Phil_fix/HBEval.csv\r\n< dd5e7bda7f93269fb1920419cb5e377e ./scoring/score_functions/hbonds/His_Phil_fix/HBFadeIntervals.csv\r\n< f93f89aec3344bef24b751914c65cded ./scoring/score_functions/hbonds/His_Phil_fix/HBPoly1D.csv\r\n< 84c04a12f436d4a2bdc3a075178a1cc3 ./scoring/score_functions/hbonds/His_Phil_fix/HBSeqSep.csv\r\n< c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/His_Phil_fix/HBondWeightType.csv\r\n< e98d94527ef2ec5869f6f5e73b2876ee ./scoring/score_functions/hbonds/His_Phil_fix/HybridizationType.csv\r\n< 99c5f0860366e119a5fd8db6a480f569 ./scoring/score_functions/hbonds/His_Phil_fix/README.txt\r\n< 7cbfb0a1f2a7a99c8d68e8c0ffac7381 ./scoring/score_functions/hbonds/His_Phil_fix/schema.sql\r\n< e86fd39b2d1e0d9f6a6cea7da797a61e ./scoring/score_functions/hbonds/OLF_params_4/HBAccChemType.csv\r\n< 58b0399dfad260e4d83f9e4ffdd6e79c ./scoring/score_functions/hbonds/OLF_params_4/HBAccHybridization.csv\r\n< 6e9cf337ed6cfe95910c436f9b1f2027 ./scoring/score_functions/hbonds/OLF_params_4/HBDonChemType.csv\r\n< c49fc81105b96e83d09354314b3e250d ./scoring/score_functions/hbonds/OLF_params_4/HBEval.csv\r\n< bcf0898dace174409d6b31bd860ac0f6 ./scoring/score_functions/hbonds/OLF_params_4/HBFadeIntervals.csv\r\n< 50627f26e3dc679f69da6934c6145097 ./scoring/score_functions/hbonds/OLF_params_4/HBPoly1D.csv\r\n< 84c04a12f436d4a2bdc3a075178a1cc3 ./scoring/score_functions/hbonds/OLF_params_4/HBSeqSep.csv\r\n< c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/OLF_params_4/HBondWeightType.csv\r\n< e98d94527ef2ec5869f6f5e73b2876ee ./scoring/score_functions/hbonds/OLF_params_4/HybridizationType.csv\r\n< 8d76dda2716236ee0a55a1d4e7f6ddf8 ./scoring/score_functions/hbonds/OLF_params_4/README.txt\r\n< e2b96ea445250681f6e518b94236429e ./scoring/score_functions/hbonds/OLF_params_4/params.db3\r\n< 28dbcf8eddb68ae2fd7c5d788a7b8223 ./scoring/score_functions/hbonds/OLF_params_4/schema.sql\r\n23363a23299\r\n> c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/correct_no_lr_params/HBondWeightType.csv\r\n23366d23301\r\n< c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/correct_no_lr_params/HBondWeightType.csv\r\n23374a23310\r\n> c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/correct_params/HBondWeightType.csv\r\n23377d23312\r\n< c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/correct_params/HBondWeightType.csv\r\n23385a23321\r\n> c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/experimental_params/HBondWeightType.csv\r\n23388d23323\r\n< c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/experimental_params/HBondWeightType.csv\r\n23396a23332\r\n> c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/extended_BAH_params/HBondWeightType.csv\r\n23399d23334\r\n< c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/extended_BAH_params/HBondWeightType.csv\r\n23402a23338\r\n> e92edbccceec88617fa7cd4f1d1d82f4 ./scoring/score_functions/hbonds/.gitignore\r\n23407a23344\r\n> c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/helix_hb_06_2009/HBondWeightType.csv\r\n23410d23346\r\n< c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/helix_hb_06_2009/HBondWeightType.csv\r\n23413a23350,23360\r\n> e86fd39b2d1e0d9f6a6cea7da797a61e ./scoring/score_functions/hbonds/His_Phil_fix/HBAccChemType.csv\r\n> 58b0399dfad260e4d83f9e4ffdd6e79c ./scoring/score_functions/hbonds/His_Phil_fix/HBAccHybridization.csv\r\n> 6e9cf337ed6cfe95910c436f9b1f2027 ./scoring/score_functions/hbonds/His_Phil_fix/HBDonChemType.csv\r\n> 610665b2060ab7849fc7adb31692cf45 ./scoring/score_functions/hbonds/His_Phil_fix/HBEval.csv\r\n> dd5e7bda7f93269fb1920419cb5e377e ./scoring/score_functions/hbonds/His_Phil_fix/HBFadeIntervals.csv\r\n> c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/His_Phil_fix/HBondWeightType.csv\r\n> f93f89aec3344bef24b751914c65cded ./scoring/score_functions/hbonds/His_Phil_fix/HBPoly1D.csv\r\n> 84c04a12f436d4a2bdc3a075178a1cc3 ./scoring/score_functions/hbonds/His_Phil_fix/HBSeqSep.csv\r\n> e98d94527ef2ec5869f6f5e73b2876ee ./scoring/score_functions/hbonds/His_Phil_fix/HybridizationType.csv\r\n> 99c5f0860366e119a5fd8db6a480f569 ./scoring/score_functions/hbonds/His_Phil_fix/README.txt\r\n> 7cbfb0a1f2a7a99c8d68e8c0ffac7381 ./scoring/score_functions/hbonds/His_Phil_fix/schema.sql\r\n23418a23366\r\n> c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/newCHI_params/HBondWeightType.csv\r\n23421d23368\r\n< c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/newCHI_params/HBondWeightType.csv\r\n23429a23377\r\n> c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/newOH_params/HBondWeightType.csv\r\n23432d23379\r\n< c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/newOH_params/HBondWeightType.csv\r\n23440a23388\r\n> c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/no_lr_params/HBondWeightType.csv\r\n23443d23390\r\n< c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/no_lr_params/HBondWeightType.csv\r\n23446a23394,23405\r\n> e86fd39b2d1e0d9f6a6cea7da797a61e ./scoring/score_functions/hbonds/OLF_params_4/HBAccChemType.csv\r\n> 58b0399dfad260e4d83f9e4ffdd6e79c ./scoring/score_functions/hbonds/OLF_params_4/HBAccHybridization.csv\r\n> 6e9cf337ed6cfe95910c436f9b1f2027 ./scoring/score_functions/hbonds/OLF_params_4/HBDonChemType.csv\r\n> c49fc81105b96e83d09354314b3e250d ./scoring/score_functions/hbonds/OLF_params_4/HBEval.csv\r\n> bcf0898dace174409d6b31bd860ac0f6 ./scoring/score_functions/hbonds/OLF_params_4/HBFadeIntervals.csv\r\n> c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/OLF_params_4/HBondWeightType.csv\r\n> 50627f26e3dc679f69da6934c6145097 ./scoring/score_functions/hbonds/OLF_params_4/HBPoly1D.csv\r\n> 84c04a12f436d4a2bdc3a075178a1cc3 ./scoring/score_functions/hbonds/OLF_params_4/HBSeqSep.csv\r\n> e98d94527ef2ec5869f6f5e73b2876ee ./scoring/score_functions/hbonds/OLF_params_4/HybridizationType.csv\r\n> e2b96ea445250681f6e518b94236429e ./scoring/score_functions/hbonds/OLF_params_4/params.db3\r\n> 8d76dda2716236ee0a55a1d4e7f6ddf8 ./scoring/score_functions/hbonds/OLF_params_4/README.txt\r\n> 28dbcf8eddb68ae2fd7c5d788a7b8223 ./scoring/score_functions/hbonds/OLF_params_4/schema.sql\r\n23453a23413\r\n> c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/ref2015_params/HBondWeightType.csv\r\n23456d23415\r\n< c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/ref2015_params/HBondWeightType.csv\r\n23464a23424\r\n> c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/score12_params/HBondWeightType.csv\r\n23467d23426\r\n< c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/score12_params/HBondWeightType.csv\r\n23475a23435\r\n> c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/sp2_elec_params/HBondWeightType.csv\r\n23478d23437\r\n< c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/sp2_elec_params/HBondWeightType.csv\r\n23486a23446\r\n> c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/sp2_params/HBondWeightType.csv\r\n23489d23448\r\n< c158236dc76ce342edf7e5af44ffeb28 ./scoring/score_functions/hbonds/sp2_params/HBondWeightType.csv\r\n23492a23452,23453\r\n> 6ead1d93543251077cae07901e0b4e18 ./scoring/score_functions/InterchainPotential/interchain_env_log.txt\r\n> 46a7774006cddf280bff3df87ad41260 ./scoring/score_functions/InterchainPotential/interchain_pair_log.txt\r\n23496a23458,23472\r\n> f0e5915e4f30db715405e80bbb69ac75 ./scoring/score_functions/MembranePotential/AsymEZ_CB_Derivs.txt\r\n> 81d9606233578fa646da1ac57572981a ./scoring/score_functions/MembranePotential/AsymEZ_CB.txt\r\n> 0358edae07a5897a0f2ca1c8826907c1 ./scoring/score_functions/MembranePotential/AsymEZ_CG_Derivs.txt\r\n> d215240467bb106d9487926cbfc0d200 ./scoring/score_functions/MembranePotential/AsymEZ_CG.txt\r\n> 4765e6290c39ce35463db5961e133d18 ./scoring/score_functions/MembranePotential/CEN10_mem_env_log.txt\r\n> 26fcb8cba9f293491c34990bea5b33e3 ./scoring/score_functions/MembranePotential/CEN10_Menv_smooth_log.txt\r\n> 0fc7c0849a9dea70e44a79347f938afc ./scoring/score_functions/MembranePotential/CEN6_mem_env_log.txt\r\n> f956e8ac1a4dbadaefe5d69891c7896e ./scoring/score_functions/MembranePotential/ELazaridis_cen_polynom_table.txt\r\n> fe3769ce8b450c89b620c05f9b04a106 ./scoring/score_functions/MembranePotential/ELazaridis_polynom_table.txt\r\n> dcdf1cb689fd5108c99a78ebfd66e4eb ./scoring/score_functions/MembranePotential/elazar_spline_mp_span_ins_fa.txt\r\n> 4a80bcb58402b65a00ce48944563aa92 ./scoring/score_functions/MembranePotential/memcbeta_den.txt\r\n> 953ff23b1b30bf4608f5b05b67ed3eab ./scoring/score_functions/MembranePotential/mem_env_log.txt\r\n> a5209b0b2d8a76f8898e7f2dac443499 ./scoring/score_functions/MembranePotential/mem_pair_log.txt\r\n> 3b6852a184ce67e5f9cc8ddf57171099 ./scoring/score_functions/MembranePotential/spline_test_cen.txt\r\n> fe84df98959bb356ff1bfa50c00fc88b ./scoring/score_functions/MembranePotential/spline_test_fa.txt\r\n23502d23477\r\n< c9563fcd6cfa95c288cabcdb1509bccb ./scoring/score_functions/mhc_epitope/propred8.txt\r\n23503a23479\r\n> c9563fcd6cfa95c288cabcdb1509bccb ./scoring/score_functions/mhc_epitope/propred8.txt\r\n23506a23483\r\n> eaa4499c741b2101b1aa0d911c3f374c ./scoring/score_functions/NV/neighbor_vector_score.histogram\r\n23530a23508,23529\r\n> 48acd1dc343d0cd660719368f4d7ad59 ./scoring/score_functions/P_AA_pp/Paa\r\n> 6d7e2505c3e46a15e0da459570176401 ./scoring/score_functions/P_AA_pp/P_AA\r\n> 826c68782f2b8a8b128a0a5f9478f085 ./scoring/score_functions/P_AA_pp/Paa_n\r\n> dbde0178006bd238ad889a09ab7d756f ./scoring/score_functions/P_AA_pp/P_AA_n\r\n> 4ba7da8cd9c178f99689828aafb1ee71 ./scoring/score_functions/P_AA_pp/P_AA_pp\r\n> 2c15072c1fb1a781e51bb9d2771a97b5 ./scoring/score_functions/P_AA_pp/P_AA_pp_08.2009\r\n> 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/10deg/AcademicLicensePropensityMap.txt\r\n> 1c24030a571145ec8febc3303611dacd ./scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa131/a20.prop\r\n> 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa131/AcademicLicensePropensityMap.txt\r\n> 72c92fee7f8406bece7670f96bf43171 ./scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa50/a20.prop\r\n> 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa50/AcademicLicensePropensityMap.txt\r\n> b1e15266c861948f12ca9aa5979218ae ./scoring/score_functions/P_AA_pp/shapovalov/10deg/Taken.From.txt\r\n> 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/AcademicLicensePropensityMap.txt\r\n> 9aac30c61fbedc7a523acad0f34d5284 ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/kappa131/a20.prop\r\n> 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/kappa131/AcademicLicensePropensityMap.txt\r\n> aae8f09f541e7444aa2f1bbe76c7388b ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/kappa50/a20.prop\r\n> 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/kappa50/AcademicLicensePropensityMap.txt\r\n> f682494cd608556260b5f052aa87f9b9 ./scoring/score_functions/P_AA_pp/shapovalov/2.5deg/Taken.From.txt\r\n> 491cdd4917b2d844ff2c5bc1a6a0b7f5 ./scoring/score_functions/P_AA_pp/shapovalov/AcademicLicensePropensityMap.txt\r\n> 9fca8b2c5743394d96f5e5113a56fa17 ./scoring/score_functions/P_AA_pp/shapovalov/argumentsExample.shapovalov.txt\r\n> 9d2b10c3e4b248a2a892136c8bc15d6a ./scoring/score_functions/P_AA_SS_cen6/P_AA_SS_cen6.txt\r\n> becdd56df1ac23c90d0536326fcb2989 ./scoring/score_functions/P_AA_SS_cen6/P_AA_SS.txt\r\n23531a23531\r\n> 59cc218d3aa4a959d548d4be40d1c348 ./scoring/score_functions/PairEPotential/pdb_pair_stats_fine\r\n23562,23566d23561\r\n< 040b4ad6fb23ac66f31e4c9b05cdd77a ./scoring/score_functions/rama/Rama.10.2009.yfsong.dat\r\n< 7354ee96baa917d797a33202670be037 ./scoring/score_functions/rama/Rama08.dat\r\n< 19afec1461b063b74c8674276d3d823c ./scoring/score_functions/rama/Rama09_noEH_kernel25_it08.dat\r\n< 7b5b9727101cba1d1ed77bfde58014f9 ./scoring/score_functions/rama/Rama_XPG_3level.txt\r\n< f12a238a018c84412a3662f13c3755f1 ./scoring/score_functions/rama/Rama_smooth_dyn.dat_ss_6.4\r\n23581d23575\r\n< 97a7f54fc4dc56a36d7f07fb43ce00fb ./scoring/score_functions/rama/beta_aa/B2A.rama\r\n23583c23577\r\n< 3a6db74f153dbc2ef58f92bc1be3956d ./scoring/score_functions/rama/beta_aa/B3A.rama\r\n---\r\n> 97a7f54fc4dc56a36d7f07fb43ce00fb ./scoring/score_functions/rama/beta_aa/B2A.rama\r\n23586,23587c23580\r\n< 2cbb5e3a46c135336354ea701965f917 ./scoring/score_functions/rama/beta_aa/B3G.rama\r\n< 2857c8e9482558100b9c1b1a0335bed5 ./scoring/score_functions/rama/beta_aa/B3G_.rama\r\n---\r\n> 3a6db74f153dbc2ef58f92bc1be3956d ./scoring/score_functions/rama/beta_aa/B3A.rama\r\n23589c23582,23583\r\n< 553b0163587c3cb61e5a20361d2d4e3c ./scoring/score_functions/rama/beta_aa/B3P.rama\r\n---\r\n> 2857c8e9482558100b9c1b1a0335bed5 ./scoring/score_functions/rama/beta_aa/B3G_.rama\r\n> 2cbb5e3a46c135336354ea701965f917 ./scoring/score_functions/rama/beta_aa/B3G.rama\r\n23590a23585,23587\r\n> 553b0163587c3cb61e5a20361d2d4e3c ./scoring/score_functions/rama/beta_aa/B3P.rama\r\n> 856bfd1ce72cee074eb9220336027ef7 ./scoring/score_functions/rama/beta_aa/cisACPC_prepro.rama\r\n> 1286972e0a203d5430157efa92a7baab ./scoring/score_functions/rama/beta_aa/cisACPC.rama\r\n23594,23595d23590\r\n< 1286972e0a203d5430157efa92a7baab ./scoring/score_functions/rama/beta_aa/cisACPC.rama\r\n< 856bfd1ce72cee074eb9220336027ef7 ./scoring/score_functions/rama/beta_aa/cisACPC_prepro.rama\r\n23600a23596,23597\r\n> 60879edc71f7e7718e2cc70e10521bc8 ./scoring/score_functions/rama/fd_beta_nov2016/all.ramaProb\r\n> ef6fdf2deccc5609aa6f4335d904b168 ./scoring/score_functions/rama/fd_beta_nov2016/prepro.ramaProb\r\n23605,23606d23601\r\n< 60879edc71f7e7718e2cc70e10521bc8 ./scoring/score_functions/rama/fd_beta_nov2016/all.ramaProb\r\n< ef6fdf2deccc5609aa6f4335d904b168 ./scoring/score_functions/rama/fd_beta_nov2016/prepro.ramaProb\r\n23608a23604,23605\r\n> d5f7a0f38042d626d17c7406adf7c2e1 ./scoring/score_functions/rama/flat/sym_all_rama.dat\r\n> c37c494b227703907ce69ce103920a5e ./scoring/score_functions/rama/flat/sym_all_rama_str.dat\r\n23613,23614d23609\r\n< d5f7a0f38042d626d17c7406adf7c2e1 ./scoring/score_functions/rama/flat/sym_all_rama.dat\r\n< c37c494b227703907ce69ce103920a5e ./scoring/score_functions/rama/flat/sym_all_rama_str.dat\r\n23619d23613\r\n< f03f96d3c324b846142786e790abd553 ./scoring/score_functions/rama/oligourea/OU3_ALA_rama.txt\r\n23621c23615\r\n< 49c6bbbb5029bbbbbe4922dc71e0252c ./scoring/score_functions/rama/oligourea/OU3_PRO_rama.txt\r\n---\r\n> f03f96d3c324b846142786e790abd553 ./scoring/score_functions/rama/oligourea/OU3_ALA_rama.txt\r\n23623c23617,23622\r\n< 937b56837ba6290903bff528cb0dd2d3 ./scoring/score_functions/rama/shapovalov/.gitignore\r\n---\r\n> 49c6bbbb5029bbbbbe4922dc71e0252c ./scoring/score_functions/rama/oligourea/OU3_PRO_rama.txt\r\n> 7354ee96baa917d797a33202670be037 ./scoring/score_functions/rama/Rama08.dat\r\n> 19afec1461b063b74c8674276d3d823c ./scoring/score_functions/rama/Rama09_noEH_kernel25_it08.dat\r\n> 040b4ad6fb23ac66f31e4c9b05cdd77a ./scoring/score_functions/rama/Rama.10.2009.yfsong.dat\r\n> f12a238a018c84412a3662f13c3755f1 ./scoring/score_functions/rama/Rama_smooth_dyn.dat_ss_6.4\r\n> 7b5b9727101cba1d1ed77bfde58014f9 ./scoring/score_functions/rama/Rama_XPG_3level.txt\r\n23625,23626d23623\r\n< ba9956b7550301c6659ed900f1f5f5bf ./scoring/score_functions/rama/shapovalov/Suggested.Default.txt\r\n< 184d8ea97ee2a68c628e7f13f9fbf5d6 ./scoring/score_functions/rama/shapovalov/Taken.From.txt\r\n23627a23625\r\n> 937b56837ba6290903bff528cb0dd2d3 ./scoring/score_functions/rama/shapovalov/.gitignore\r\n23629d23626\r\n< ba9956b7550301c6659ed900f1f5f5bf ./scoring/score_functions/rama/shapovalov/kappa25/Suggested.Default.txt\r\n23630a23628\r\n> ba9956b7550301c6659ed900f1f5f5bf ./scoring/score_functions/rama/shapovalov/kappa25/Suggested.Default.txt\r\n23636a23635,23636\r\n> ba9956b7550301c6659ed900f1f5f5bf ./scoring/score_functions/rama/shapovalov/Suggested.Default.txt\r\n> 184d8ea97ee2a68c628e7f13f9fbf5d6 ./scoring/score_functions/rama/shapovalov/Taken.From.txt\r\n23637a23638\r\n> 14bd5a5c7d3829af1f630a120ee6b15a ./scoring/score_functions/saxs/always_one.ff\r\n23642a23644,23646\r\n> 4e61f89d94286e19b16121492bbbf131 ./scoring/score_functions/saxs/ff-rosetta-cen.cfg\r\n> 4e61f89d94286e19b16121492bbbf131 ./scoring/score_functions/saxs/ff-rosetta.cfg\r\n> ba5c664e76deeabb320e1ff99e741e68 ./scoring/score_functions/saxs/ff-rosetta-fa.cfg\r\n23660,23663d23663\r\n< 14bd5a5c7d3829af1f630a120ee6b15a ./scoring/score_functions/saxs/always_one.ff\r\n< 4e61f89d94286e19b16121492bbbf131 ./scoring/score_functions/saxs/ff-rosetta-cen.cfg\r\n< ba5c664e76deeabb320e1ff99e741e68 ./scoring/score_functions/saxs/ff-rosetta-fa.cfg\r\n< 4e61f89d94286e19b16121492bbbf131 ./scoring/score_functions/saxs/ff-rosetta.cfg\r\n23664a23665,23667\r\n> b38dd32df507671463d41f82a1cf7062 ./scoring/score_functions/SecondaryStructurePotential/phi.theta.36.HS.resmooth\r\n> e09326496a7d664bb8174736f5f2ce5f ./scoring/score_functions/SecondaryStructurePotential/phi.theta.36.SS.resmooth\r\n> 6212a94d503152d8d52db10ebd31f9cf ./scoring/score_functions/SecondaryStructurePotential/rsigma_dot.txt\r\n23703a23707,23709\r\n> c6dccb2e49c05862d1e9ddbfce25abe3 ./scoring/score_functions/SurfacePotential/average_hASA_by_res_and_neighbor.txt\r\n> b1a432b3b104d221498d5e3333123511 ./scoring/score_functions/SurfacePotential/hpatch_score.txt\r\n> 1e73fba906f4aa4a62680420c02adb6c ./scoring/score_functions/SurfacePotential/surface_score.txt\r\n23709,23713d23714\r\n< b68446231d67c4d6655cd09b50981a5a ./scoring/weights/HBNet.wts\r\n< 651020bfb2c643be760b16546e9bedb4 ./scoring/weights/PPI_discrimination.wts\r\n< c1608568fb0fe9232625900e865cd051 ./scoring/weights/ProQ2.wts\r\n< 72a18a4f6a752b9f6d1f13891c5ee910 ./scoring/weights/ProQM.wts\r\n< 8ea55c33410fc3a33510e0edc3741111 ./scoring/weights/RS_centroid.wts\r\n23717d23717\r\n< 54dcab894f25d619ecf675f6b75ce7ea ./scoring/weights/antibody_design.wts_patch\r\n23719c23719\r\n< 9acdaa4fa59e699a5875c9c88515e995 ./scoring/weights/beta.wts\r\n---\r\n> 54dcab894f25d619ecf675f6b75ce7ea ./scoring/weights/antibody_design.wts_patch\r\n23722d23721\r\n< 9acdaa4fa59e699a5875c9c88515e995 ./scoring/weights/beta_genpot.wts\r\n23726c23725\r\n< 864a853ab1b6e3667d1f208dbae146fd ./scoring/weights/beta_july15.wts\r\n---\r\n> 9acdaa4fa59e699a5875c9c88515e995 ./scoring/weights/beta_genpot.wts\r\n23729c23728\r\n< 61aabafd6676a0baa76d80e4bb3a05b2 ./scoring/weights/beta_nov15.wts\r\n---\r\n> 864a853ab1b6e3667d1f208dbae146fd ./scoring/weights/beta_july15.wts\r\n23733c23732\r\n< 60cf702c8022453dcc47b9b5e0a046b8 ./scoring/weights/beta_nov16.wts\r\n---\r\n> 61aabafd6676a0baa76d80e4bb3a05b2 ./scoring/weights/beta_nov15.wts\r\n23737c23736\r\n< 2d3819b821803f362cecadfa064890cc ./scoring/weights/beta_peptide.wts\r\n---\r\n> 60cf702c8022453dcc47b9b5e0a046b8 ./scoring/weights/beta_nov16.wts\r\n23741c23740\r\n< d453b63479afffacb16d0119f9a10aec ./scoring/weights/beta_soft.wts\r\n---\r\n> 2d3819b821803f362cecadfa064890cc ./scoring/weights/beta_peptide.wts\r\n23742a23742,23743\r\n> d453b63479afffacb16d0119f9a10aec ./scoring/weights/beta_soft.wts\r\n> 9acdaa4fa59e699a5875c9c88515e995 ./scoring/weights/beta.wts\r\n23745d23745\r\n< fa45d5cc339982ad96512af4d1f88e51 ./scoring/weights/cen_std.wts\r\n23746a23747\r\n> fa45d5cc339982ad96512af4d1f88e51 ./scoring/weights/cen_std.wts\r\n23749d23749\r\n< 42fd758007e99bfefe9abff7909f9d3e ./scoring/weights/ddg.wts\r\n23750a23751\r\n> 42fd758007e99bfefe9abff7909f9d3e ./scoring/weights/ddg.wts\r\n23753d23753\r\n< 67e3d74b037acc59c0020efb6fd6f7f4 ./scoring/weights/dna.wts\r\n23756,23757c23756\r\n< c0efb7f47a1e940493ad14157d10abc6 ./scoring/weights/docking.wts\r\n< fdc3f9912848011d3469265520eb2bc3 ./scoring/weights/docking.wts_patch\r\n---\r\n> 67e3d74b037acc59c0020efb6fd6f7f4 ./scoring/weights/dna.wts\r\n23760a23760,23761\r\n> c0efb7f47a1e940493ad14157d10abc6 ./scoring/weights/docking.wts\r\n> fdc3f9912848011d3469265520eb2bc3 ./scoring/weights/docking.wts_patch\r\n23762d23762\r\n< 29923606b58036b69b1774d875ed5a33 ./scoring/weights/enzdes.wts\r\n23763a23764\r\n> 29923606b58036b69b1774d875ed5a33 ./scoring/weights/enzdes.wts\r\n23769d23769\r\n< 4001cc20f78ece921c3dd2fcbeb9843b ./scoring/weights/gauss.wts\r\n23770a23771\r\n> 4001cc20f78ece921c3dd2fcbeb9843b ./scoring/weights/gauss.wts\r\n23772d23772\r\n< e0b9ae8b268d53a6430d498aaf5f27a1 ./scoring/weights/genpot_full.wts\r\n23773a23774,23775\r\n> e0b9ae8b268d53a6430d498aaf5f27a1 ./scoring/weights/genpot_full.wts\r\n> b68446231d67c4d6655cd09b50981a5a ./scoring/weights/HBNet.wts\r\n23782d23783\r\n< 0f350e8fe59bc158b7769827592747d7 ./scoring/weights/ligand.wts\r\n23784,23785d23784\r\n< 212570db88180b6ab4d5347b13f4267e ./scoring/weights/ligand_soft_rep.wts\r\n< 74c4ed8b3b3eaa7d6127b6ae67a86e68 ./scoring/weights/ligand_soft_rep_gen_born.wts\r\n23786a23786,23788\r\n> 74c4ed8b3b3eaa7d6127b6ae67a86e68 ./scoring/weights/ligand_soft_rep_gen_born.wts\r\n> 212570db88180b6ab4d5347b13f4267e ./scoring/weights/ligand_soft_rep.wts\r\n> 0f350e8fe59bc158b7769827592747d7 ./scoring/weights/ligand.wts\r\n23789,23790d23790\r\n< 8fcf4a3f6f52944664fef0ddd7a88405 ./scoring/weights/make_rot_lib.wts\r\n< c7dadd09508f7e1fc5f47af6e16358fa ./scoring/weights/make_rot_lib_orig.wts\r\n23792c23792,23793\r\n< 99f6c28853309eaff0820664d376d65a ./scoring/weights/membrane_highres.wts\r\n---\r\n> c7dadd09508f7e1fc5f47af6e16358fa ./scoring/weights/make_rot_lib_orig.wts\r\n> 8fcf4a3f6f52944664fef0ddd7a88405 ./scoring/weights/make_rot_lib.wts\r\n23793a23795\r\n> 99f6c28853309eaff0820664d376d65a ./scoring/weights/membrane_highres.wts\r\n23796,23797d23797\r\n< 3ca4a4a59f23bb66107b6e883f62313b ./scoring/weights/mm_std.wts\r\n< 0e7cfba2d6e569bbae3a9d8a0a187eda ./scoring/weights/mm_std_cart.wts\r\n23799c23799\r\n< e5574fc8d7ac8c435a168278fa7ac14d ./scoring/weights/mm_std_fa_elec_dslf_fa13.wts\r\n---\r\n> 0e7cfba2d6e569bbae3a9d8a0a187eda ./scoring/weights/mm_std_cart.wts\r\n23801d23800\r\n< 4075193a1e065c2425a7917d1eafca16 ./scoring/weights/mm_std_fa_elec_dslf_fa13_split_unfolded.wts\r\n23802a23802,23803\r\n> 4075193a1e065c2425a7917d1eafca16 ./scoring/weights/mm_std_fa_elec_dslf_fa13_split_unfolded.wts\r\n> e5574fc8d7ac8c435a168278fa7ac14d ./scoring/weights/mm_std_fa_elec_dslf_fa13.wts\r\n23803a23805\r\n> 3ca4a4a59f23bb66107b6e883f62313b ./scoring/weights/mm_std.wts\r\n23814d23815\r\n< 9d9aeb1728223cc1549d21ff310dde48 ./scoring/weights/mpframework_smooth_fa_2012.wts\r\n23815a23817\r\n> 9d9aeb1728223cc1549d21ff310dde48 ./scoring/weights/mpframework_smooth_fa_2012.wts\r\n23824d23825\r\n< 2d1408607a622c799ce0f362dff3f59d ./scoring/weights/occ_Hbond_sol_fitted.wts_patch\r\n23827d23827\r\n< 2fc5d5ac3facc14e704d8a5cff3bda79 ./scoring/weights/occ_Hbond_sol_fitted_tal.wts_patch\r\n23829a23830,23831\r\n> 2fc5d5ac3facc14e704d8a5cff3bda79 ./scoring/weights/occ_Hbond_sol_fitted_tal.wts_patch\r\n> 2d1408607a622c799ce0f362dff3f59d ./scoring/weights/occ_Hbond_sol_fitted.wts_patch\r\n23831d23832\r\n< 9b607811ac9bb9c1848677c6cb1fd153 ./scoring/weights/orbitals.wts\r\n23833d23833\r\n< 46d2f725cdb2bae301bc3e0044aa4de8 ./scoring/weights/orbitals_talaris2013.wts\r\n23834a23835,23836\r\n> 46d2f725cdb2bae301bc3e0044aa4de8 ./scoring/weights/orbitals_talaris2013.wts\r\n> 9b607811ac9bb9c1848677c6cb1fd153 ./scoring/weights/orbitals.wts\r\n23837a23840\r\n> 651020bfb2c643be760b16546e9bedb4 ./scoring/weights/PPI_discrimination.wts\r\n23839,23840c23842,23843\r\n< 61aabafd6676a0baa76d80e4bb3a05b2 ./scoring/weights/ref2015.wts\r\n< 2a4460342c0aed62cae45cda43486f19 ./scoring/weights/ref2015_cart.wts\r\n---\r\n> c1608568fb0fe9232625900e865cd051 ./scoring/weights/ProQ2.wts\r\n> 72a18a4f6a752b9f6d1f13891c5ee910 ./scoring/weights/ProQM.wts\r\n23841a23845\r\n> 2a4460342c0aed62cae45cda43486f19 ./scoring/weights/ref2015_cart.wts\r\n23844a23849\r\n> 61aabafd6676a0baa76d80e4bb3a05b2 ./scoring/weights/ref2015.wts\r\n23848d23852\r\n< 0415ea6b9e0180b7ff6183726a027aa5 ./scoring/weights/rna/denovo/rna_hires.wts\r\n23851c23855\r\n< 8beb898247bec04644176bffc86ffd03 ./scoring/weights/rna/denovo/rna_lores.wts\r\n---\r\n> 0415ea6b9e0180b7ff6183726a027aa5 ./scoring/weights/rna/denovo/rna_hires.wts\r\n23853d23856\r\n< 1423cd5e5a96d4e378ab8ef5e3ec988b ./scoring/weights/rna/denovo/rna_lores_with_rnp.wts\r\n23855a23859,23860\r\n> 1423cd5e5a96d4e378ab8ef5e3ec988b ./scoring/weights/rna/denovo/rna_lores_with_rnp.wts\r\n> 8beb898247bec04644176bffc86ffd03 ./scoring/weights/rna/denovo/rna_lores.wts\r\n23857d23861\r\n< af4fe51f97266f6ba978e86ab125dd3d ./scoring/weights/rnp_ddg.wts\r\n23858a23863\r\n> af4fe51f97266f6ba978e86ab125dd3d ./scoring/weights/rnp_ddg.wts\r\n23859a23865\r\n> 8ea55c33410fc3a33510e0edc3741111 ./scoring/weights/RS_centroid.wts\r\n23861,23862d23866\r\n< 28a32d54c62531f4b9c68f3a439ce42e ./scoring/weights/score0.wts\r\n< ac4bb008c9f9f4f905c7710725c51c19 ./scoring/weights/score0.wts_patch\r\n23864d23867\r\n< 46125280d5c35ee916b4d430281fdfbe ./scoring/weights/score0_memb.wts\r\n23866,23868c23869,23871\r\n< 691e872145c72c059bdaa5a5007b67bd ./scoring/weights/score1.wts\r\n< ac624d6a9d54add2ee522497054dd578 ./scoring/weights/score12.wts\r\n< 54888cef0a8b2b7d2e2616a8c02cc187 ./scoring/weights/score12.wts_patch\r\n---\r\n> 46125280d5c35ee916b4d430281fdfbe ./scoring/weights/score0_memb.wts\r\n> 28a32d54c62531f4b9c68f3a439ce42e ./scoring/weights/score0.wts\r\n> ac4bb008c9f9f4f905c7710725c51c19 ./scoring/weights/score0.wts_patch\r\n23871a23875\r\n> eccbce993a0f115450c00cf5749b9d9e ./scoring/weights/score12minpack.wts\r\n23872a23877\r\n> 4a33f7143fd65c350a3d9c54e4059db3 ./scoring/weights/score12prime.wts\r\n23877,23879c23882,23883\r\n< eccbce993a0f115450c00cf5749b9d9e ./scoring/weights/score12minpack.wts\r\n< 4a33f7143fd65c350a3d9c54e4059db3 ./scoring/weights/score12prime.wts\r\n< 45b992d26e37a919835f2318476b629e ./scoring/weights/score13.wts\r\n---\r\n> ac624d6a9d54add2ee522497054dd578 ./scoring/weights/score12.wts\r\n> 54888cef0a8b2b7d2e2616a8c02cc187 ./scoring/weights/score12.wts_patch\r\n23880a23885\r\n> 45b992d26e37a919835f2318476b629e ./scoring/weights/score13.wts\r\n23885c23890\r\n< 371bc2a51d405236064d3c16b3d93a2f ./scoring/weights/score2.wts\r\n---\r\n> 691e872145c72c059bdaa5a5007b67bd ./scoring/weights/score1.wts\r\n23890c23895\r\n< b2565b1a419a03840bd02f1abf40497b ./scoring/weights/score3.wts\r\n---\r\n> 371bc2a51d405236064d3c16b3d93a2f ./scoring/weights/score2.wts\r\n23897c23902\r\n< db41f45aa78e7059374b4542cf7d62a1 ./scoring/weights/score4L.wts_patch\r\n---\r\n> b2565b1a419a03840bd02f1abf40497b ./scoring/weights/score3.wts\r\n23900d23904\r\n< 90bdc21cb34f8efab7f81e8a43d0f634 ./scoring/weights/score4_cenrot_relax.wts\r\n23901a23906\r\n> 90bdc21cb34f8efab7f81e8a43d0f634 ./scoring/weights/score4_cenrot_relax.wts\r\n23903c23908\r\n< 2981841f37b3baca4f03120856902781 ./scoring/weights/score4_smooth.wts\r\n---\r\n> db41f45aa78e7059374b4542cf7d62a1 ./scoring/weights/score4L.wts_patch\r\n23906c23911\r\n< b134e4dd151e0d69b0f06c3eeea79489 ./scoring/weights/score5.wts\r\n---\r\n> 2981841f37b3baca4f03120856902781 ./scoring/weights/score4_smooth.wts\r\n23911,23912c23916,23918\r\n< d53adb4836d0e252ed9c52a13d4bea6a ./scoring/weights/score_membrane.wts\r\n< a4ca71ab67be0c8977d9d3d716909ebb ./scoring/weights/score_membrane_cen.wts\r\n---\r\n> b134e4dd151e0d69b0f06c3eeea79489 ./scoring/weights/score5.wts\r\n> 31c56864f239a441c0cc027196e4b460 ./scoring/weights/scorefacts_cart.wts\r\n> 4a066beec86c3594580041b352c6e892 ./scoring/weights/scorefacts.wts\r\n23913a23920\r\n> a4ca71ab67be0c8977d9d3d716909ebb ./scoring/weights/score_membrane_cen.wts\r\n23915,23916c23922\r\n< 4a066beec86c3594580041b352c6e892 ./scoring/weights/scorefacts.wts\r\n< 31c56864f239a441c0cc027196e4b460 ./scoring/weights/scorefacts_cart.wts\r\n---\r\n> d53adb4836d0e252ed9c52a13d4bea6a ./scoring/weights/score_membrane.wts\r\n23919d23924\r\n< 7002c564312deaad8393a0310bf947d7 ./scoring/weights/soft_rep.wts\r\n23922,23923c23927\r\n< cf5173f7aad0b7712b25bd400fe21351 ./scoring/weights/sp2_correction.wts\r\n< cffd9eac51b69a1c544d8752d696a1bb ./scoring/weights/sp2_correction_dun02.wts\r\n---\r\n> 7002c564312deaad8393a0310bf947d7 ./scoring/weights/soft_rep.wts\r\n23924a23929,23930\r\n> cffd9eac51b69a1c544d8752d696a1bb ./scoring/weights/sp2_correction_dun02.wts\r\n> cf5173f7aad0b7712b25bd400fe21351 ./scoring/weights/sp2_correction.wts\r\n23928d23933\r\n< 8ead29c3bef1142ea9fdbd68f36f38a0 ./scoring/weights/stepwise/rna/LOG.txt\r\n23931a23937\r\n> 8ead29c3bef1142ea9fdbd68f36f38a0 ./scoring/weights/stepwise/rna/LOG.txt\r\n23934d23939\r\n< 5158925d2848349a6cf7dd7f01fe3d1c ./scoring/weights/stepwise/rna/rna_hires_elec_dens.wts\r\n23937c23942\r\n< 1c008b7cc0007358375077fa4178cd5b ./scoring/weights/stepwise/rna/rna_hires_fang.wts\r\n---\r\n> 5158925d2848349a6cf7dd7f01fe3d1c ./scoring/weights/stepwise/rna/rna_hires_elec_dens.wts\r\n23938a23944\r\n> 1c008b7cc0007358375077fa4178cd5b ./scoring/weights/stepwise/rna/rna_hires_fang.wts\r\n23941d23946\r\n< 3f5e54b20df3cc86e2440ee745a6d06c ./scoring/weights/stepwise/rna/rna_res_level_energy.wts\r\n23945d23949\r\n< 76159d24400ee5918dea83bd586ad3bf ./scoring/weights/stepwise/rna/rna_res_level_energy_with_intra.wts\r\n23947c23951,23952\r\n< 38ca492bb617e330a22e389633ce39a9 ./scoring/weights/stepwise/rna/turner.wts\r\n---\r\n> 76159d24400ee5918dea83bd586ad3bf ./scoring/weights/stepwise/rna/rna_res_level_energy_with_intra.wts\r\n> 3f5e54b20df3cc86e2440ee745a6d06c ./scoring/weights/stepwise/rna/rna_res_level_energy.wts\r\n23948a23954\r\n> 38ca492bb617e330a22e389633ce39a9 ./scoring/weights/stepwise/rna/turner.wts\r\n23950d23955\r\n< 0d0a8d241d33777bf15aa5691c4bc916 ./scoring/weights/talaris2013.wts\r\n23958c23963\r\n< 5a79df0f751147ef6e41936f971a76b3 ./scoring/weights/talaris2014.wts\r\n---\r\n> 0d0a8d241d33777bf15aa5691c4bc916 ./scoring/weights/talaris2013.wts\r\n23960a23966\r\n> 5a79df0f751147ef6e41936f971a76b3 ./scoring/weights/talaris2014.wts\r\n23969d23974\r\n< bb2e357b75be255a10c533b66a92ba1f ./sequence/mhc_pssms/HLA-DPA101-DPB10401_nooverlap.9mer.norm.pssm\r\n23970a23976\r\n> bb2e357b75be255a10c533b66a92ba1f ./sequence/mhc_pssms/HLA-DPA101-DPB10401_nooverlap.9mer.norm.pssm\r\n23997d24002\r\n< 8e946fc029ada19f3d6e0ba885c08da9 ./sequence/mhc_rank_svm_scores/HLA-DPA101-DPB10401.libsvm.test.out.sort.gz\r\n23998a24004\r\n> 8e946fc029ada19f3d6e0ba885c08da9 ./sequence/mhc_rank_svm_scores/HLA-DPA101-DPB10401.libsvm.test.out.sort.gz\r\n24025d24030\r\n< 13645dc70cfd088bd9c5622f9b08d2cc ./sequence/mhc_svms/HLA-DPA101-DPB10401_nooverlap.libsvm.dat.noscale.nu0.5.min_mse.model\r\n24026a24032\r\n> 13645dc70cfd088bd9c5622f9b08d2cc ./sequence/mhc_svms/HLA-DPA101-DPB10401_nooverlap.libsvm.dat.noscale.nu0.5.min_mse.model\r\n24051d24056\r\n< cac591fa6c4ed634c991ecce240bbea7 ./sequence/resinfo.db\r\n24052a24058\r\n> cac591fa6c4ed634c991ecce240bbea7 ./sequence/resinfo.db\r\n24054d24059\r\n< 1c58289a1253ef0ef2e7f56e9e7374bf ./sequence/substitution_matrix/BLOSUM62.prob.rescale\r\n24055a24061\r\n> 1c58289a1253ef0ef2e7f56e9e7374bf ./sequence/substitution_matrix/BLOSUM62.prob.rescale\r\n24183,24186d24188\r\n< 318b9793c21e14af7bd0677b9efab46b ./virtual_enzymes/N-terminal_acetyltransferases/h_sapiens/generic\r\n< 17ed5ffba14493433ce81f26b08551c7 ./virtual_enzymes/N-terminal_acetyltransferases/s_solfataricus/Ard1\r\n< 821ce0b905c3cec7c7fcdc9f914eae2d ./virtual_enzymes/README\r\n< 41d550b2dc3f2a33da29012e14ef44c0 ./virtual_enzymes/glycosyltransferases/c_jejuni/PglB\r\n24188c24190\r\n< 542b786e0dae1272fdf0f62cf792657c ./virtual_enzymes/glycosyltransferases/h_sapiens/OGT\r\n---\r\n> 41d550b2dc3f2a33da29012e14ef44c0 ./virtual_enzymes/glycosyltransferases/c_jejuni/PglB\r\n24190c24192\r\n< 1431861dd530531f02b4dbfa433562b2 ./virtual_enzymes/kinases/h_sapiens/AMPK\r\n---\r\n> 542b786e0dae1272fdf0f62cf792657c ./virtual_enzymes/glycosyltransferases/h_sapiens/OGT\r\n24191a24194,24197\r\n> 1431861dd530531f02b4dbfa433562b2 ./virtual_enzymes/kinases/h_sapiens/AMPK\r\n> d4c9fb8426f2c5dcd3e7059c1fa1b8ce ./virtual_enzymes/kinases/h_sapiens/CaMK1\r\n> 65d785605ce7195de86c25ae271f1e21 ./virtual_enzymes/kinases/h_sapiens/CaMK2\r\n> 6b04ac7e3d1ccd8b3fe58e1b618b479e ./virtual_enzymes/kinases/h_sapiens/CaMK4\r\n24201,24203d24206\r\n< d4c9fb8426f2c5dcd3e7059c1fa1b8ce ./virtual_enzymes/kinases/h_sapiens/CaMK1\r\n< 65d785605ce7195de86c25ae271f1e21 ./virtual_enzymes/kinases/h_sapiens/CaMK2\r\n< 6b04ac7e3d1ccd8b3fe58e1b618b479e ./virtual_enzymes/kinases/h_sapiens/CaMK4\r\n24206a24210\r\n> d6ba2fd1beb890083904fe49305bcab9 ./virtual_enzymes/kinases/h_sapiens/generic\r\n24213a24218,24219\r\n> bffd304627f865c1d6b21edcd8b9d14e ./virtual_enzymes/kinases/h_sapiens/PhK\r\n> 6d9a9ad15fc0a9676ef1c2d51d623472 ./virtual_enzymes/kinases/h_sapiens/Pim1\r\n24224,24225d24229\r\n< bffd304627f865c1d6b21edcd8b9d14e ./virtual_enzymes/kinases/h_sapiens/PhK\r\n< 6d9a9ad15fc0a9676ef1c2d51d623472 ./virtual_enzymes/kinases/h_sapiens/Pim1\r\n24230c24234,24236\r\n< d6ba2fd1beb890083904fe49305bcab9 ./virtual_enzymes/kinases/h_sapiens/generic\r\n---\r\n> 318b9793c21e14af7bd0677b9efab46b ./virtual_enzymes/N-terminal_acetyltransferases/h_sapiens/generic\r\n> 17ed5ffba14493433ce81f26b08551c7 ./virtual_enzymes/N-terminal_acetyltransferases/s_solfataricus/Ard1\r\n> 821ce0b905c3cec7c7fcdc9f914eae2d ./virtual_enzymes/README\r\n", "state": "failed" }, "features_pdb_mpi": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/features_pdb_mpi: features_IntegrationTest.db3.dump\r\nOnly in /home/benchmark/working_dir/main:62132/features_pdb_mpi: log_db_output\r\nOnly in /home/benchmark/working_dir/main:62131/features_pdb_mpi: .test_did_not_run.log\r\n", "state": "failed" }, "helical_bundle_predict": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict: output.silent\r\nOnly in /home/benchmark/working_dir/main:62131/helical_bundle_predict: .test_did_not_run.log\r\n", "state": "failed" }, "helical_bundle_predict_psipred": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict_psipred: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict_psipred: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict_psipred: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict_psipred: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict_psipred: output.silent\r\nOnly in /home/benchmark/working_dir/main:62131/helical_bundle_predict_psipred: .test_did_not_run.log\r\n", "state": "failed" }, "helical_bundle_predict_psipred_with_helix_globals": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict_psipred_with_helix_globals: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict_psipred_with_helix_globals: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict_psipred_with_helix_globals: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict_psipred_with_helix_globals: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict_psipred_with_helix_globals: output.silent\r\nOnly in /home/benchmark/working_dir/main:62131/helical_bundle_predict_psipred_with_helix_globals: .test_did_not_run.log\r\n", "state": "failed" }, "helical_bundle_predict_sequence": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict_sequence: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict_sequence: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict_sequence: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict_sequence: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict_sequence: output.silent\r\nOnly in /home/benchmark/working_dir/main:62131/helical_bundle_predict_sequence: .test_did_not_run.log\r\n", "state": "failed" }, "helical_bundle_predict_skipping_residues": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict_skipping_residues: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict_skipping_residues: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict_skipping_residues: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict_skipping_residues: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/helical_bundle_predict_skipping_residues: output.silent\r\nOnly in /home/benchmark/working_dir/main:62131/helical_bundle_predict_skipping_residues: .test_did_not_run.log\r\n", "state": "failed" }, "mpi_simple_cycpep_predict": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict/log and /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict/log differ\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict: out.silent\r\nOnly in /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict: .test_did_not_run.log\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict/log /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict/log\r\n1,8d0\r\n< --------------------------------------------------------------------------\r\n< The value of the MCA parameter \"plm_rsh_agent\" was set to a path\r\n< that could not be found:\r\n< \r\n< plm_rsh_agent: ssh : rsh\r\n< \r\n< Please either unset the parameter, or check that the path is correct\r\n< --------------------------------------------------------------------------\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict: out.silent\r\nOnly in /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict: .test_did_not_run.log\r\n", "state": "failed" }, "mpi_simple_cycpep_predict_4level": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict_4level/log and /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level/log differ\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level: out.silent\r\nOnly in /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict_4level: .test_did_not_run.log\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict_4level/log /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level/log\r\n1,8d0\r\n< --------------------------------------------------------------------------\r\n< The value of the MCA parameter \"plm_rsh_agent\" was set to a path\r\n< that could not be found:\r\n< \r\n< plm_rsh_agent: ssh : rsh\r\n< \r\n< Please either unset the parameter, or check that the path is correct\r\n< --------------------------------------------------------------------------\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_4level: out.silent\r\nOnly in /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict_4level: .test_did_not_run.log\r\n", "state": "failed" }, "mpi_simple_cycpep_predict_computing_pnear_to_all": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict_computing_pnear_to_all/log and /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_computing_pnear_to_all/log differ\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_computing_pnear_to_all: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_computing_pnear_to_all: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_computing_pnear_to_all: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_computing_pnear_to_all: out.silent\r\nOnly in /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict_computing_pnear_to_all: .test_did_not_run.log\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict_computing_pnear_to_all/log /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_computing_pnear_to_all/log\r\n1,8d0\r\n< --------------------------------------------------------------------------\r\n< The value of the MCA parameter \"plm_rsh_agent\" was set to a path\r\n< that could not be found:\r\n< \r\n< plm_rsh_agent: ssh : rsh\r\n< \r\n< Please either unset the parameter, or check that the path is correct\r\n< --------------------------------------------------------------------------\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_computing_pnear_to_all: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_computing_pnear_to_all: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_computing_pnear_to_all: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/mpi_simple_cycpep_predict_computing_pnear_to_all: out.silent\r\nOnly in /home/benchmark/working_dir/main:62131/mpi_simple_cycpep_predict_computing_pnear_to_all: .test_did_not_run.log\r\n", "state": "failed" }, "recon_design_mpi": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/recon_design_mpi: 1avzmpi_0001.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/recon_design_mpi: 1m27mpi_0001.pdb\r\nFiles /home/benchmark/working_dir/main:62131/recon_design_mpi/log_main and /home/benchmark/working_dir/main:62132/recon_design_mpi/log_main differ\r\nOnly in /home/benchmark/working_dir/main:62132/recon_design_mpi: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/recon_design_mpi: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/recon_design_mpi: scorempi.sc\r\nOnly in /home/benchmark/working_dir/main:62131/recon_design_mpi: .test_did_not_run.log\r\n\n\nFull Diff:\nOnly in /home/benchmark/working_dir/main:62132/recon_design_mpi: 1avzmpi_0001.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/recon_design_mpi: 1m27mpi_0001.pdb\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62131/recon_design_mpi/log_main /home/benchmark/working_dir/main:62132/recon_design_mpi/log_main\r\n1,8c1,6\r\n< --------------------------------------------------------------------------\r\n< The value of the MCA parameter \"plm_rsh_agent\" was set to a path\r\n< that could not be found:\r\n< \r\n< plm_rsh_agent: ssh : rsh\r\n< \r\n< Please either unset the parameter, or check that the path is correct\r\n< --------------------------------------------------------------------------\r\n---\r\n> ******** (C) Copyright Rosetta Commons Member Institutions. ***************\r\n> * Use of Rosetta for commercial purposes may require purchase of a license. *\r\n> ******** See LICENSE.md or email license@uw.edu for more details. **********\r\n> ******** (C) Copyright Rosetta Commons Member Institutions. ***************\r\n> * Use of Rosetta for commercial purposes may require purchase of a license. *\r\n> ******** See LICENSE.md or email license@uw.edu for more details. **********\r\nOnly in /home/benchmark/working_dir/main:62132/recon_design_mpi: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/recon_design_mpi: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/recon_design_mpi: scorempi.sc\r\nOnly in /home/benchmark/working_dir/main:62131/recon_design_mpi: .test_did_not_run.log\r\n", "state": "failed" }, "replica_docking": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62131/replica_docking/log and /home/benchmark/working_dir/main:62132/replica_docking/log differ\r\nOnly in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_0\r\nOnly in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_1\r\nOnly in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_2\r\nOnly in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_3\r\nOnly in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_4\r\nOnly in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_5\r\nOnly in /home/benchmark/working_dir/main:62131/replica_docking: .test_did_not_run.log\r\nOnly in /home/benchmark/working_dir/main:62132/replica_docking: .test_got_timeout_kill.log\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62131/replica_docking/log /home/benchmark/working_dir/main:62132/replica_docking/log\r\n0a1,12\r\n> ******** (C) Copyright Rosetta Commons Member Institutions. ***************\r\n> * Use of Rosetta for commercial purposes may require purchase of a license. *\r\n> ******** See LICENSE.md or email license@uw.edu for more details. **********\r\n> ******** (C) Copyright Rosetta Commons Member Institutions. ***************\r\n> * Use of Rosetta for commercial purposes may require purchase of a license. *\r\n> ******** See LICENSE.md or email license@uw.edu for more details. **********\r\n> ******** (C) Copyright Rosetta Commons Member Institutions. ***************\r\n> * Use of Rosetta for commercial purposes may require purchase of a license. *\r\n> ******** See LICENSE.md or email license@uw.edu for more details. **********\r\n> ******** (C) Copyright Rosetta Commons Member Institutions. ***************\r\n> * Use of Rosetta for commercial purposes may require purchase of a license. *\r\n> ******** See LICENSE.md or email license@uw.edu for more details. **********\r\n2,7c14\r\n< The value of the MCA parameter \"plm_rsh_agent\" was set to a path\r\n< that could not be found:\r\n< \r\n< plm_rsh_agent: ssh : rsh\r\n< \r\n< Please either unset the parameter, or check that the path is correct\r\n---\r\n> mpirun noticed that process rank 3 with PID 954008 on node hojo-4 exited on signal 9 (Killed).\r\nOnly in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_0\r\nOnly in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_1\r\nOnly in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_2\r\nOnly in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_3\r\nOnly in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_4\r\nOnly in /home/benchmark/working_dir/main:62132/replica_docking/logs: log_5\r\nOnly in /home/benchmark/working_dir/main:62131/replica_docking: .test_did_not_run.log\r\nOnly in /home/benchmark/working_dir/main:62132/replica_docking: .test_got_timeout_kill.log\r\n\nCompare(...): Marking as \"Script failed\" due to presense of .test_did_not_run.log or .test_got_timeout_kill.log file!\n", "state": "script failed" }, "simple_cycpep_predict_beta_thioether_lariat": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_beta_thioether_lariat: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_beta_thioether_lariat: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_beta_thioether_lariat: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_beta_thioether_lariat: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_beta_thioether_lariat: out_mpi.silent\r\nOnly in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_beta_thioether_lariat: .test_did_not_run.log\r\n", "state": "failed" }, "simple_cycpep_predict_bondangle_bondlength": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_bondangle_bondlength: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_bondangle_bondlength: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_bondangle_bondlength: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_bondangle_bondlength: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_bondangle_bondlength: out_mpi.silent\r\nOnly in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_bondangle_bondlength: .test_did_not_run.log\r\n", "state": "failed" }, "simple_cycpep_predict_cterm_isopeptide_lariat": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_cterm_isopeptide_lariat: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_cterm_isopeptide_lariat: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_cterm_isopeptide_lariat: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_cterm_isopeptide_lariat: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_cterm_isopeptide_lariat: out_mpi.silent\r\nOnly in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_cterm_isopeptide_lariat: .test_did_not_run.log\r\n", "state": "failed" }, "simple_cycpep_predict_cterm_isopeptide_lariat_tailless": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_cterm_isopeptide_lariat_tailless: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_cterm_isopeptide_lariat_tailless: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_cterm_isopeptide_lariat_tailless: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_cterm_isopeptide_lariat_tailless: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_cterm_isopeptide_lariat_tailless: out_mpi.silent\r\nOnly in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_cterm_isopeptide_lariat_tailless: .test_did_not_run.log\r\n", "state": "failed" }, "simple_cycpep_predict_design": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_design: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_design: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_design: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_design: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_design: num_structs.txt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_design: out_mpi.silent\r\nOnly in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_design: .test_did_not_run.log\r\n", "state": "failed" }, "simple_cycpep_predict_lanthionine": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_lanthionine: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_lanthionine: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_lanthionine: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_lanthionine: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_lanthionine: out_mpi.silent\r\nOnly in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_lanthionine: .test_did_not_run.log\r\n", "state": "failed" }, "simple_cycpep_predict_nterm_isopeptide_lariat": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_nterm_isopeptide_lariat: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_nterm_isopeptide_lariat: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_nterm_isopeptide_lariat: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_nterm_isopeptide_lariat: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_nterm_isopeptide_lariat: out_mpi.silent\r\nOnly in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_nterm_isopeptide_lariat: .test_did_not_run.log\r\n", "state": "failed" }, "simple_cycpep_predict_nterm_isopeptide_lariat_tailless": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_nterm_isopeptide_lariat_tailless: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_nterm_isopeptide_lariat_tailless: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_nterm_isopeptide_lariat_tailless: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_nterm_isopeptide_lariat_tailless: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_nterm_isopeptide_lariat_tailless: out_mpi.silent\r\nOnly in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_nterm_isopeptide_lariat_tailless: .test_did_not_run.log\r\n", "state": "failed" }, "simple_cycpep_predict_sidechain_isopeptide": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_sidechain_isopeptide: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_sidechain_isopeptide: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_sidechain_isopeptide: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_sidechain_isopeptide: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_sidechain_isopeptide: out_mpi.silent\r\nOnly in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_sidechain_isopeptide: .test_did_not_run.log\r\n", "state": "failed" }, "simple_cycpep_predict_sidechain_isopeptide_reverse": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_sidechain_isopeptide_reverse: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_sidechain_isopeptide_reverse: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_sidechain_isopeptide_reverse: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_sidechain_isopeptide_reverse: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_sidechain_isopeptide_reverse: out_mpi.silent\r\nOnly in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_sidechain_isopeptide_reverse: .test_did_not_run.log\r\n", "state": "failed" }, "simple_cycpep_predict_terminal_disulfide": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide: out_mpi.silent\r\nOnly in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_terminal_disulfide: .test_did_not_run.log\r\n", "state": "failed" }, "simple_cycpep_predict_terminal_disulfide_tails": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide_tails: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide_tails: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide_tails: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide_tails: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide_tails: out_mpi.silent\r\nOnly in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_terminal_disulfide_tails: .test_did_not_run.log\r\n", "state": "failed" }, "simple_cycpep_predict_terminal_disulfide_tails_2": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide_tails_2: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide_tails_2: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_terminal_disulfide_tails_2: out.silent\r\nOnly in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_terminal_disulfide_tails_2: .test_did_not_run.log\r\n", "state": "failed" }, "simple_cycpep_predict_thioether_lariat": { "log": "Brief Diff:\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_thioether_lariat: mpi_log_0.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_thioether_lariat: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_thioether_lariat: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_thioether_lariat: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/simple_cycpep_predict_thioether_lariat: out_mpi.silent\r\nOnly in /home/benchmark/working_dir/main:62131/simple_cycpep_predict_thioether_lariat: .test_did_not_run.log\r\n", "state": "failed" }, "threefold_symm_peptide_design": { "log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62131/threefold_symm_peptide_design/log and /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design/log differ\r\nOnly in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: S_0001.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: S_0003.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: score_sorted.sc\r\nOnly in /home/benchmark/working_dir/main:62131/threefold_symm_peptide_design: .test_did_not_run.log\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62131/threefold_symm_peptide_design/log /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design/log\r\n1,8d0\r\n< --------------------------------------------------------------------------\r\n< The value of the MCA parameter \"plm_rsh_agent\" was set to a path\r\n< that could not be found:\r\n< \r\n< plm_rsh_agent: ssh : rsh\r\n< \r\n< Please either unset the parameter, or check that the path is correct\r\n< --------------------------------------------------------------------------\r\nOnly in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: mpi_log_1.filt\r\nOnly in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: mpi_log_2.filt\r\nOnly in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: mpi_log_3.filt\r\nOnly in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: S_0001.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: S_0003.pdb\r\nOnly in /home/benchmark/working_dir/main:62132/threefold_symm_peptide_design: score_sorted.sc\r\nOnly in /home/benchmark/working_dir/main:62131/threefold_symm_peptide_design: .test_did_not_run.log\r\n", "state": "failed" } } }

integration test suite description

integration test suite

(plain)

debug

release_debug

release_debug_with_symbols

mpi

pytorch

tensorflow

thread

bcl