Test: linux.clang.cxx11thread.serialization.python37.PyRosetta.unit 「view this page in B3 βῆτα server」
Branch: rosetta:commits 「revision: №20532」
Test files: 「file-system-view」 「file-list-view」
Daemon: nobu-5     Started at: 2024-09-25 15:56:22     Run time: 0:21:55      State: build failed


Test Log

Building PyRosetta MinSizeRel... Command line: cd /home/benchmark/rosetta/source/src/python/PyRosetta && /home/benchmark/prefix/nobu-5/linux/python-3.7.gcc/97da995822dbf0e01ad4322567219cef/bin/python3.7 build.py -j64 --compiler clang --type MinSizeRel --python-include-dir=/home/benchmark/prefix/nobu-5/linux/python-3.7.gcc/97da995822dbf0e01ad4322567219cef/include/python3.7m --python-lib=/home/benchmark/prefix/nobu-5/linux/python-3.7.gcc/97da995822dbf0e01ad4322567219cef/lib --multi-threaded --serialization Creating PyRosetta in "MinSizeRel" mode in: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-centos-7.9.2009-Core/clang-3.4.2/python-3.7/minsizerel.serialization.thread Getting main repository root... cd /home/benchmark/rosetta/source && git rev-parse --show-toplevel /home/benchmark/rosetta Updating Pybind11 Git submodule... cd /home/benchmark/rosetta/source/.. && git submodule update --init -- source/external/pybind11 Updating Binder Git submodule... cd /home/benchmark/rosetta/source/.. && git submodule update --init -- source/src/python/PyRosetta/binder LLVM build detected, but config/binder version has changed, perfoming a clean rebuild... Building tool: binder... cd /home/benchmark/rosetta/source/build/prefix/llvm-6.0.1/llvm-6.0.1.Linux-5.4.0-84-generic-x86_64-with-centos-7.9.2009-Core.release && cmake -G Ninja -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER=`which clang` -DCMAKE_CXX_COMPILER=`which clang++` -DLLVM_ENABLE_EH=1 -DLLVM_ENABLE_RTTI=ON .. && ninja binder tools/clang/lib/Headers/clang-headers -j64 Updating compilation submodules, version, options and residue-type-enum files... cd /home/benchmark/rosetta/source && ./update_submodules.sh PyRosetta bcl zeromq && ./version.py && ./update_options.sh && ./update_ResidueType_enum_files.sh Updating submodules needed for compilation. Running versioning script ... Done. (0.1 seconds) Number of option files updated: 0 Total 4707 options. Finished updating ResidueProperty code -- no changes needed Finished updating VariantType code -- no changes needed Generating bindings... cd /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-centos-7.9.2009-Core/clang-3.4.2/python-3.7/minsizerel.serialization.thread/source/ && /home/benchmark/rosetta/source/build/prefix/llvm-6.0.1/llvm-6.0.1.Linux-5.4.0-84-generic-x86_64-with-centos-7.9.2009-Core.release/bin/binder --config ./rosetta.config --root-module rosetta --prefix /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-centos-7.9.2009-Core/clang-3.4.2/python-3.7/minsizerel.serialization.thread/source/ /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-centos-7.9.2009-Core/clang-3.4.2/python-3.7/minsizerel.serialization.thread/source/all_rosetta_includes.hh -- -std=c++11 -isystem external -isystem external/include -isystem external/boost_submod -isystem external/dbio -isystem external/dbio/sqlite3 -isystem external/libxml2/include -isystem external/rdkit -isystem external/bcl/include -Isrc -Isrc/platform/linux -DPYROSETTA -DNOCRASHREPORT -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DPTR_STD -DNDEBUG -DBCL_NO_OS_SIGNAL_HANDLING -DSERIALIZATION -DMULTI_THREADED -DPYROSETTA_BINDER Process input file /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-centos-7.9.2009-Core/clang-3.4.2/python-3.7/minsizerel.serialization.thread/source/all_rosetta_includes.hh Generate bindings, pass 1... ...truncated... [5761/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/hybridization/HybridizeFoldtreeDynamic.cc.o [5762/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/CutBiasClaimer.cc.o [5763/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/noesy_assign/CrossPeakList.cc.o [5764/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/ddg/CartesianddG.cc.o [5765/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/motifs/IRCollection.cc.o [5766/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/noesy_assign/FragsToAtomDist.cc.o [5767/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/noesy_assign/PeakFileFormat.cc.o [5768/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/ConstraintEvaluatorWrapper.cc.o [5769/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/noesy_assign/ResonanceList.cc.o [5770/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/noesy_assign/PeakAssignment.cc.o [5771/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNNMover.cc.o [5772/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/abinitio/AbrelaxApplication.cc.o [5773/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/PcsEnergyController.cc.o [5774/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/motifs/MotifDnaPacker.cc.o [5775/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/noesy_assign/PeakAssignmentParameters.cc.o [5776/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/PseudocontactShiftEnergyController.cc.o [5777/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/SequenceNumberResolver.cc.o [5778/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/PseudocontactShiftEnergyController_Ts1.cc.o [5779/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/PseudocontactShiftEnergyController_Ts2.cc.o [5780/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/DensityScoringClaimer.cc.o [5781/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/symmetric_docking/SymSidechainMinMover.cc.o [5782/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/PseudocontactShiftEnergyController_Ts3.cc.o [5783/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/LoopFragmentClaimer.cc.o [5784/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/AtomInResidueAtomInResiduePairFeaturesCreator.cc.o [5785/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/PseudocontactShiftEnergyController_Ts4.cc.o [5786/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/rbsegment_relax/RBSegmentRelax_main.cc.o [5787/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/hybridization/CartesianSampler.cc.o [5788/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/AtomAtomPairFeaturesCreator.cc.o [5789/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/abinitio/IterativeBase.cc.o [5790/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/AtomTypesFeaturesCreator.cc.o [5791/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/claims/DofClaim.cc.o [5792/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/BetaTurnDetectionFeaturesCreator.cc.o [5793/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/ChargeChargeFeaturesCreator.cc.o [5794/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/rbsegment_relax/RBSegmentMover.cc.o [5795/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/trRosetta_protocols/constraint_generators/trRosettaConstraintGenerator.cc.o [5796/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/DdGFeaturesCreator.cc.o [5797/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/BasicJumpClaimer.cc.o [5798/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/motifs/IdentifyLigandMotifs.cc.o [5799/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/ConstraintEvaluatorWrapperCreator.cc.o [5800/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/FragmentClaimer.cc.o [5801/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/BatchFeatures.cc.o [5802/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/symmetric_docking/membrane/MPSymDockMover.cc.o [5803/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/motifs/motif_utils.cc.o [5804/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/GeometricSolvationFeaturesCreator.cc.o [5805/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/surface_docking/FullatomRelaxMover.cc.o [5806/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/HBondFeaturesCreator.cc.o [5807/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/rbsegment_relax/IdealizeHelices.cc.o [5808/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/rbsegment_relax/AutoRBRelaxMover.cc.o [5809/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/motifs/LigandDiscoverySearch.cc.o FAILED: CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/motifs/LigandDiscoverySearch.cc.o /usr/bin/clang++ -DBCL_NO_OS_SIGNAL_HANDLING -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_SYSTEM_NO_DEPRECATED -DMULTI_THREADED -DNDEBUG -DNOCRASHREPORT -DPTR_STD -DPYROSETTA -DSERIALIZATION -I/home/benchmark/prefix/nobu-5/linux/python-3.7.gcc/97da995822dbf0e01ad4322567219cef/include/python3.7m -I/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-centos-7.9.2009-Core/clang-3.4.2/python-3.7/minsizerel.serialization.thread/source/src -I/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-centos-7.9.2009-Core/clang-3.4.2/python-3.7/minsizerel.serialization.thread/source/src/platform/linux -isystem /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-centos-7.9.2009-Core/clang-3.4.2/python-3.7/minsizerel.serialization.thread/source/external -isystem /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-centos-7.9.2009-Core/clang-3.4.2/python-3.7/minsizerel.serialization.thread/source/external/include -isystem /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-centos-7.9.2009-Core/clang-3.4.2/python-3.7/minsizerel.serialization.thread/source/external/boost_submod -isystem /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-centos-7.9.2009-Core/clang-3.4.2/python-3.7/minsizerel.serialization.thread/source/external/dbio -isystem /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-centos-7.9.2009-Core/clang-3.4.2/python-3.7/minsizerel.serialization.thread/source/external/dbio/sqlite3 -isystem /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-centos-7.9.2009-Core/clang-3.4.2/python-3.7/minsizerel.serialization.thread/source/external/libxml2/include -isystem /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-centos-7.9.2009-Core/clang-3.4.2/python-3.7/minsizerel.serialization.thread/source/external/rdkit -isystem /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-centos-7.9.2009-Core/clang-3.4.2/python-3.7/minsizerel.serialization.thread/source/external/bcl/include -isystem /home/benchmark/rosetta/source/external/pybind11/include -std=c++11 -fvisibility=hidden -fvisibility-inlines-hidden -Os -DNDEBUG -fPIC -Werror=non-virtual-dtor -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/motifs/LigandDiscoverySearch.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/motifs/LigandDiscoverySearch.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/motifs/LigandDiscoverySearch.cc.o -c /home/benchmark/rosetta/source/src/protocols/motifs/LigandDiscoverySearch.cc /home/benchmark/rosetta/source/src/protocols/motifs/LigandDiscoverySearch.cc:840:36: error: member reference type 'core::pose::Pose' is not a pointer; maybe you meant to use '.'? original_pose_ = (*working_pose_)->clone(); ~~~~~~~~~~~~~~~~^~ . /home/benchmark/rosetta/source/src/protocols/motifs/LigandDiscoverySearch.cc:840:18: error: no viable overloaded '=' original_pose_ = (*working_pose_)->clone(); ~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~~~~~~~ /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-centos-7.9.2009-Core/clang-3.4.2/python-3.7/minsizerel.serialization.thread/source/src/core/pose/Pose.hh:227:2: note: candidate function not viable: no known conversion from 'PoseOP' (aka 'shared_ptr<core::pose::Pose>') to 'const core::pose::Pose' for 1st argument operator=( Pose const & src ); ^ 2 errors generated. [5810/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/DisulfJumpClaimer.cc.o [5811/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/HBondParameterFeaturesCreator.cc.o [5812/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/HelixCapFeaturesCreator.cc.o [5813/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/RigidBodyRandomTMHMover.cc.o [5814/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNNProbabilitiesMetric.cc.o [5815/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/rbsegment_relax/util.cc.o [5816/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/rbsegment_relax/FragInsertAndAlignMover.cc.o [5817/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/DatabaseStatements.cc.o [5818/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/MetalloClaimer.cc.o [5819/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/motifs/LigandMotifSearch.cc.o [5820/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/FragmentJumpClaimer.cc.o [5821/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/BetaTurnDetectionFeatures.cc.o [5822/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/ChargeChargeFeatures.cc.o [5823/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/InterfaceDdGMoverCreator.cc.o [5824/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TopologyClaimer.cc.o [5825/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/motifs/MotifSearch.cc.o [5826/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/rbsegment_relax/OptimizeThreading.cc.o [5827/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/ConstraintClaimer.cc.o [5828/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/noesy_assign/NoesyModule.cc.o [5829/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/rbsegment_relax/RBSegmentRelax.cc.o [5830/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TemplateFragmentClaimer.cc.o [5831/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/surface_docking/SurfaceDockingProtocol.cc.o [5832/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/symmetric_docking/SymFoldandDockSlideTrialMover.cc.o [5833/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/symmetric_docking/SymDockingLowRes.cc.o [5834/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/StartStructClaimer.cc.o [5835/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/SymmetryClaimer.cc.o [5836/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/AtomTypesFeatures.cc.o [5837/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/CoordConstraintClaimer.cc.o [5838/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/symmetric_docking/SymFoldandDockRbTrialMover.cc.o [5839/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/DdGFeatures.cc.o [5840/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/FeaturesReporterFactory.cc.o [5841/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/trRosetta_protocols/movers/trRosettaProtocolMover.cc.o [5842/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/BetaTurnDetection.cc.o [5843/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/symmetric_docking/SymDockingHiRes.cc.o [5844/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/loop_grower/FragmentExtension.cc.o [5845/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/DatabaseJobOutputter.cc.o [5846/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/hybridization/FoldTreeHybridize.cc.o [5847/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/FeaturesReporter.cc.o [5848/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TopologyClaimerFactory.cc.o [5849/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/GeometricSolvationFeatures.cc.o [5850/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/AsymFoldandDockClaimer.cc.o [5851/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/HBondParameterFeatures.cc.o [5852/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/FoldandDockClaimer.cc.o [5853/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/SequenceClaimer.cc.o [5854/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/FibrilModelingClaimer.cc.o [5855/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TemplateJumpClaimer.cc.o [5856/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/DatabaseFilters.cc.o [5857/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/AtomInResidueAtomInResiduePairFeatures.cc.o [5858/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/HelixCapFeatures.cc.o [5859/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/util.cc.o [5860/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/MembraneTopologyClaimer.cc.o [5861/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/hybridization/HybridizeProtocol.cc.o [5862/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/DatabaseJobInputter.cc.o [5863/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/AtomAtomPairFeatures.cc.o [5864/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/RigidChunkClaimer.cc.o [5865/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/symmetric_docking/SymDockProtocol.cc.o [5866/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/rbsegment_relax/ConfChangeMover.cc.o [5867/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/loop_grower/LoopGrower.cc.o [5868/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TMHTopologySamplerClaimer.cc.o [5869/8712] Building CXX object CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TopologyBroker.cc.o [5870/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/InterfaceDdGMover.cc.o [5871/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/InterfaceFeatures.cc.o [5872/8712] Building CXX object CMakeFiles/protocols_c.5.dir/home/benchmark/rosetta/source/src/protocols/features/HBondFeatures.cc.o ninja: build stopped: subcommand failed.

Sub-Tests Results

All sub-tests

JSON output

{}