Compiling: find bin -type l ! -name ".*" -exec rm {} \; ; /home/benchmark/prefix/sokudo-1/linux/python-3.9.gcc/99a1a29fd465f86265a7c5b92d75dbcd/bin/python3.9 ./scons.py bin mode=release cxx=clang extras= -j4
Running: /home/benchmark/rosetta/source/bin/performance_benchmark.default.linuxclangrelease -database /home/benchmark/rosetta/database -benchmark_scale 64 -mute core protocols -in:file:extra_res_path extra_params >/home/benchmark/working_dir/_performance_.log 2>&1
basic.random.init_random_generator: 'RNG device' seed mode, using '/dev/urandom', seed=-1365449436 seed_offset=0 real_seed=-1365449436
basic.random.init_random_generator: RandomGenerator:init: Normal mode, seed=-1365449436 RG_type=mt19937
benchmark: Performance Benchmark started! Scale factor: 64 -------------
benchmark:
benchmark: Executing all benchmarks...
benchmark:
benchmark: Setting up instantiate_modules_packer_palettes...
benchmark: Running(U) instantiate_modules_packer_palettes...
benchmark: Running(U) instantiate_modules_packer_palettes... Done. Time: 64. Times executed:4022009
benchmark: Tear down instantiate_modules_packer_palettes...
benchmark: Tear down instantiate_modules_packer_palettes... Done.
benchmark:
benchmark: Setting up protocols_moves_SmallMover...
basic.io.database: Database file opened: scoring/score_functions/rama/shapovalov/kappa25/all.ramaProb
benchmark: Running(U) protocols_moves_SmallMover...
benchmark: Running(U) protocols_moves_SmallMover... Done. Time: 64.0252. Times executed:1070
benchmark: Tear down protocols_moves_SmallMover...
benchmark: Tear down protocols_moves_SmallMover... Done.
benchmark:
benchmark: Setting up instantiate_modules_movers...
benchmark: Running(U) instantiate_modules_movers...
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt
basic.io.database: Database file opened: scoring/score_functions/SecondaryStructurePotential/phi.theta.36.HS.resmooth
basic.io.database: Database file opened: scoring/score_functions/SecondaryStructurePotential/phi.theta.36.SS.resmooth
basic.io.database: Database file opened: scoring/score_functions/InterchainPotential/interchain_env_log.txt
basic.io.database: Database file opened: scoring/score_functions/InterchainPotential/interchain_pair_log.txt
basic.io.database: Database file opened: protocol_data/crick_parameters/alpha_helix.crick_params
...truncated...
basic.io.database: Database file opened: protocol_data/denovo_design/preproline_normalized.gz
basic.io.database: Database file opened: protocol_data/SDE/GUIP.matrix
devel.replica_docking.CaIrmsdFilter: End constructer
basic.io.database: Database file opened: protocol_data/denovo_design/preproline_normalized.gz
basic.io.database: Database file opened: protocol_data/SDE/GUIP.matrix
devel.replica_docking.CaIrmsdFilter: End constructer
basic.io.database: Database file opened: protocol_data/denovo_design/preproline_normalized.gz
basic.io.database: Database file opened: protocol_data/SDE/GUIP.matrix
devel.replica_docking.CaIrmsdFilter: End constructer
basic.io.database: Database file opened: protocol_data/denovo_design/preproline_normalized.gz
basic.io.database: Database file opened: protocol_data/SDE/GUIP.matrix
devel.replica_docking.CaIrmsdFilter: End constructer
basic.io.database: Database file opened: protocol_data/denovo_design/preproline_normalized.gz
basic.io.database: Database file opened: protocol_data/SDE/GUIP.matrix
devel.replica_docking.CaIrmsdFilter: End constructer
basic.io.database: Database file opened: protocol_data/denovo_design/preproline_normalized.gz
basic.io.database: Database file opened: protocol_data/SDE/GUIP.matrix
devel.replica_docking.CaIrmsdFilter: End constructer
basic.io.database: Database file opened: protocol_data/denovo_design/preproline_normalized.gz
basic.io.database: Database file opened: protocol_data/SDE/GUIP.matrix
devel.replica_docking.CaIrmsdFilter: End constructer
basic.io.database: Database file opened: protocol_data/denovo_design/preproline_normalized.gz
basic.io.database: Database file opened: protocol_data/SDE/GUIP.matrix
devel.replica_docking.CaIrmsdFilter: End constructer
basic.io.database: Database file opened: protocol_data/denovo_design/preproline_normalized.gz
basic.io.database: Database file opened: protocol_data/SDE/GUIP.matrix
devel.replica_docking.CaIrmsdFilter: End constructer
basic.io.database: Database file opened: protocol_data/denovo_design/preproline_normalized.gz
basic.io.database: Database file opened: protocol_data/SDE/GUIP.matrix
devel.replica_docking.CaIrmsdFilter: End constructer
basic.io.database: Database file opened: protocol_data/denovo_design/preproline_normalized.gz
basic.io.database: Database file opened: protocol_data/SDE/GUIP.matrix
devel.replica_docking.CaIrmsdFilter: End constructer
basic.io.database: Database file opened: protocol_data/denovo_design/preproline_normalized.gz
basic.io.database: Database file opened: protocol_data/SDE/GUIP.matrix
devel.replica_docking.CaIrmsdFilter: End constructer
basic.io.database: Database file opened: protocol_data/denovo_design/preproline_normalized.gz
basic.io.database: Database file opened: protocol_data/SDE/GUIP.matrix
devel.replica_docking.CaIrmsdFilter: End constructer
basic.io.database: Database file opened: protocol_data/denovo_design/preproline_normalized.gz
basic.io.database: Database file opened: protocol_data/SDE/GUIP.matrix
devel.replica_docking.CaIrmsdFilter: End constructer
basic.io.database: Database file opened: protocol_data/denovo_design/preproline_normalized.gz
basic.io.database: Database file opened: protocol_data/SDE/GUIP.matrix
devel.replica_docking.CaIrmsdFilter: End constructer
basic.io.database: Database file opened: protocol_data/denovo_design/preproline_normalized.gz
basic.io.database: Database file opened: protocol_data/SDE/GUIP.matrix
benchmark: Running(U) instantiate_modules_filters... Done. Time: 64.0025. Times executed:19531
benchmark: Tear down instantiate_modules_filters...
benchmark: Tear down instantiate_modules_filters... Done.
benchmark:
benchmark: Setting up instantiate_modules_res_level_task_operations...
benchmark: Running(U) instantiate_modules_res_level_task_operations...
benchmark: Running(U) instantiate_modules_res_level_task_operations... Done. Time: 64. Times executed:41690547
benchmark: Tear down instantiate_modules_res_level_task_operations...
benchmark: Tear down instantiate_modules_res_level_task_operations... Done.
benchmark:
benchmark: Setting up core_scoring_Score...
benchmark: Running(U) core_scoring_Score...
benchmark: Running(U) core_scoring_Score... Done. Time: 64.0041. Times executed:1748
benchmark: Tear down core_scoring_Score...
benchmark: Tear down core_scoring_Score... Done.
benchmark:
benchmark: Setting up instantiate_modules_simple_metrics...
benchmark: Running(U) instantiate_modules_simple_metrics...
benchmark: Running(U) instantiate_modules_simple_metrics... Done. Time: 64.0003. Times executed:188508
benchmark: Tear down instantiate_modules_simple_metrics...
benchmark: Tear down instantiate_modules_simple_metrics... Done.
benchmark:
benchmark: Setting up protocols_optimization_Minimizer_dfpmin...
benchmark: Running(U) protocols_optimization_Minimizer_dfpmin...
benchmark: Running(U) protocols_optimization_Minimizer_dfpmin... Done. Time: 68.4591. Times executed:8
benchmark: Tear down protocols_optimization_Minimizer_dfpmin...
benchmark: Tear down protocols_optimization_Minimizer_dfpmin... Done.
benchmark:
benchmark: Setting up protocols_docking_DockingHighRes...
basic.random.init_random_generator: Constant seed mode, seed=1111111 seed_offset=0 real_seed=1111111
basic.random.init_random_generator: RandomGenerator:init: Normal mode, seed=1111111 RG_type=mt19937
benchmark: Running(U) protocols_docking_DockingHighRes...
benchmark: Running(U) protocols_docking_DockingHighRes... Done. Time: 65.9573. Times executed:4
benchmark: Tear down protocols_docking_DockingHighRes...
benchmark: Tear down protocols_docking_DockingHighRes... Done.
benchmark:
benchmark: Setting up protocols_docking_DockingLowRes...
basic.random.init_random_generator: Constant seed mode, seed=1111111 seed_offset=0 real_seed=1111111
basic.random.init_random_generator: RandomGenerator:init: Normal mode, seed=1111111 RG_type=mt19937
benchmark: Running(U) protocols_docking_DockingLowRes...
benchmark: Running(U) protocols_docking_DockingLowRes... Done. Time: 68.7392. Times executed:14
benchmark: Tear down protocols_docking_DockingLowRes...
benchmark: Tear down protocols_docking_DockingLowRes... Done.
benchmark:
benchmark: Setting up instantiate_modules_residue_selectors...
benchmark: Running(U) instantiate_modules_residue_selectors...
benchmark: Running(U) instantiate_modules_residue_selectors... Done. Time: 64. Times executed:2054682
benchmark: Tear down instantiate_modules_residue_selectors...
benchmark: Tear down instantiate_modules_residue_selectors... Done.
benchmark:
benchmark: Setting up utility_tag_Tag_Create...
benchmark: Running(U) utility_tag_Tag_Create...
benchmark: Running(U) utility_tag_Tag_Create... Done. Time: 64.0262. Times executed:674
benchmark: Tear down utility_tag_Tag_Create...
benchmark: Tear down utility_tag_Tag_Create... Done.
benchmark:
benchmark:
benchmark: Executing all benchmarks... Done.
benchmark: Results:
benchmark: {
"basic_options_OptionCollection":{"run_time":64.430883, "cycles":124},
"core_scoring_Score":{"run_time":64.004082, "cycles":1748},
"protocols_moves_SmallMover":{"run_time":64.025155, "cycles":1070},
"protocols_moves_ShearMover":{"run_time":64.021134, "cycles":1060},
"protocols_optimization_Minimizer_dfpmin":{"run_time":68.459123, "cycles":8},
"protocols_optimization_Minimizer_dfpmin_armijo":{"run_time":64.186884, "cycles":17},
"protocols_optimization_Minimizer_dfpmin_armijo_nonmonotone":{"run_time":65.114883, "cycles":14},
"protocols_docking_DockingLowRes":{"run_time":68.739154, "cycles":14},
"protocols_docking_DockingHighRes":{"run_time":65.957319, "cycles":4},
"core_import_pose_pose_from_pdbstring":{"run_time":64.682696, "cycles":69},
"utility_tag_Tag_Create":{"run_time":64.026198, "cycles":674},
"instantiate_modules_movers":{"run_time":64.001416, "cycles":6681},
"instantiate_modules_filters":{"run_time":64.002459, "cycles":19531},
"instantiate_modules_task_operations":{"run_time":64.000091, "cycles":400046},
"instantiate_modules_res_level_task_operations":{"run_time":64.000002, "cycles":41690547},
"instantiate_modules_residue_selectors":{"run_time":64.000035, "cycles":2054682},
"instantiate_modules_simple_metrics":{"run_time":64.000256, "cycles":188508},
"instantiate_modules_packer_palettes":{"run_time":64.000007, "cycles":4022009}
}
benchmark: Performance Benchmark ended. --------------------------------
──────────────── 'hojo-1' comparing commits:20530 linux.clang.performance test_id=840011 vs. main:62109 previous_test_id=827819 ────────────────
WARNING: Previous test results does not have `.execution.results.json` file, so comparison with None was performed instead!
WARNING: This can often be fixed by merging with the latest `main`.
WARNING: Overriding calculated test state `passed` → `failed`...
{
"compared_with_test": {
"full_name": "linux.clang.performance",
"name": "performance",
"platform": {
"compiler": "clang",
"extras": [],
"os": "linux"
},
"platform_as_string": "linux.clang",
"revision": {
"branch": "main",
"revision_id": 62109
},
"state": "passed",
"test_id": 827819
},
"plots": [
{
"data": [
{
"color": "#66f",
"legend": "cycles",
"y": "cycles"
}
],
"type": "sub_test:revision_value"
}
],
"summary": {
"failed": 0,
"failed_tests": [],
"total": 18
},
"tests": {
"basic_options_OptionCollection": {
"cycles": 124,
"log": "First run, no previous results available. Skipping comparison...\n",
"previous_values": null,
"run_time": 64.430883,
"state": "passed"
},
"core_import_pose_pose_from_pdbstring": {
"cycles": 69,
"log": "First run, no previous results available. Skipping comparison...\n",
"previous_values": null,
"run_time": 64.682696,
"state": "passed"
},
"core_scoring_Score": {
"cycles": 1748,
"log": "First run, no previous results available. Skipping comparison...\n",
"previous_values": null,
"run_time": 64.004082,
"state": "passed"
},
"instantiate_modules_filters": {
"cycles": 19531,
"log": "First run, no previous results available. Skipping comparison...\n",
"previous_values": null,
"run_time": 64.002459,
"state": "passed"
},
"instantiate_modules_movers": {
"cycles": 6681,
"log": "First run, no previous results available. Skipping comparison...\n",
"previous_values": null,
"run_time": 64.001416,
"state": "passed"
},
"instantiate_modules_packer_palettes": {
"cycles": 4022009,
"log": "First run, no previous results available. Skipping comparison...\n",
"previous_values": null,
"run_time": 64.000007,
"state": "passed"
},
"instantiate_modules_res_level_task_operations": {
"cycles": 41690547,
"log": "First run, no previous results available. Skipping comparison...\n",
"previous_values": null,
"run_time": 64.000002,
"state": "passed"
},
"instantiate_modules_residue_selectors": {
"cycles": 2054682,
"log": "First run, no previous results available. Skipping comparison...\n",
"previous_values": null,
"run_time": 64.000035,
"state": "passed"
},
"instantiate_modules_simple_metrics": {
"cycles": 188508,
"log": "First run, no previous results available. Skipping comparison...\n",
"previous_values": null,
"run_time": 64.000256,
"state": "passed"
},
"instantiate_modules_task_operations": {
"cycles": 400046,
"log": "First run, no previous results available. Skipping comparison...\n",
"previous_values": null,
"run_time": 64.000091,
"state": "passed"
},
"protocols_docking_DockingHighRes": {
"cycles": 4,
"log": "First run, no previous results available. Skipping comparison...\n",
"previous_values": null,
"run_time": 65.957319,
"state": "passed"
},
"protocols_docking_DockingLowRes": {
"cycles": 14,
"log": "First run, no previous results available. Skipping comparison...\n",
"previous_values": null,
"run_time": 68.739154,
"state": "passed"
},
"protocols_moves_ShearMover": {
"cycles": 1060,
"log": "First run, no previous results available. Skipping comparison...\n",
"previous_values": null,
"run_time": 64.021134,
"state": "passed"
},
"protocols_moves_SmallMover": {
"cycles": 1070,
"log": "First run, no previous results available. Skipping comparison...\n",
"previous_values": null,
"run_time": 64.025155,
"state": "passed"
},
"protocols_optimization_Minimizer_dfpmin": {
"cycles": 8,
"log": "First run, no previous results available. Skipping comparison...\n",
"previous_values": null,
"run_time": 68.459123,
"state": "passed"
},
"protocols_optimization_Minimizer_dfpmin_armijo": {
"cycles": 17,
"log": "First run, no previous results available. Skipping comparison...\n",
"previous_values": null,
"run_time": 64.186884,
"state": "passed"
},
"protocols_optimization_Minimizer_dfpmin_armijo_nonmonotone": {
"cycles": 14,
"log": "First run, no previous results available. Skipping comparison...\n",
"previous_values": null,
"run_time": 65.114883,
"state": "passed"
},
"utility_tag_Tag_Create": {
"cycles": 674,
"log": "First run, no previous results available. Skipping comparison...\n",
"previous_values": null,
"run_time": 64.026198,
"state": "passed"
}
}
}