Test: linux.clang.build.ninja_debug 「view this page in B3 βῆτα server」
Branch: rosetta:commits 「revision: №20510」
Test files: 「file-system-view」 「file-list-view」
Daemon: nobu-3     Started at: 2024-09-24 13:36:33     Run time: 0:10:41      State: failed


Running: ./ninja_build.py debug -v -remake -j48 ['z', 'zlib', 'cppdb', 'sqlite3', 'cifparse', 'libxml2', 'libzmq', 'rdkit', 'bcl', 'cmaes'] Running versioning script ... Done. (0.1 seconds) Number of option files updated: 0 Total 4707 options. Updating submodules needed for compilation. Finished updating ResidueProperty code -- no changes needed Finished updating VariantType code -- no changes needed Examining external z Examining external zlib making external project files for project zlib ...done. Examining external cppdb Examining external sqlite3 Examining external cifparse making external project files for project cifparse ...done. Examining external libxml2 making external project files for project libxml2 ...done. Examining external libzmq making external project files for project libzmq ...done. Examining external rdkit making external project files for project rdkit ...done. Examining external bcl making external project files for project bcl ...done. Examining external cmaes making external project files for project cmaes ...done. making project files for project ObjexxFCL ...done. making project files for project utility ...done. making project files for project numeric ...done. making project files for project basic ...done. making project files for project core.1 ...done. making project files for project core.2 ...done. making project files for project core.3 ...done. making project files for project core.4 ...done. making project files for project core.5 ...done. making project files for project core.6 ...done. making project files for project protocols.1 ...done. making project files for project protocols_a.2 ...done. making project files for project protocols_b.2 ...done. making project files for project protocols.3 ...done. making project files for project protocols.4 ...done. making project files for project protocols_a.5 ...done. making project files for project protocols_b.5 ...done. making project files for project protocols_c.5 ...done. making project files for project protocols_d.5 ...done. making project files for project protocols_e.5 ...done. making project files for project protocols_f.5 ...done. making project files for project protocols_g.5 ...done. making project files for project protocols_h.5 ...done. making project files for project protocols_a.6 ...done. making project files for project protocols_b.6 ...done. making project files for project protocols_c.6 ...done. making project files for project protocols_d.6 ...done. making project files for project protocols_e.6 ...done. making project files for project protocols.7 ...done. making project files for project protocols.8 ...done. making project files for project devel ...done. making project files for project apps ...done. Found /home/benchmark/rosetta/source/src/pilot_apps.src.settings.all and going to use it! making project files for project pilot_apps ...done. making test files for test numeric ...done. making test files for test utility ...done. making test files for test ObjexxFCL ...done. making test files for test basic ...done. making test files for test core ...done. making test files for test protocols ...done. making test files for test apps ...done. making test files for test devel ...done. CMake Warning: No source or binary directory provided. Both will be assumed to be the same as the current working directory, but note that this warning will become a fatal error in future CMake releases. CMake Warning (dev) in CMakeLists.txt: No project() command is present. The top-level CMakeLists.txt file must contain a literal, direct call to the project() command. Add a line of code such as project(ProjectName) near the top of the file, but after cmake_minimum_required(). CMake is pretending there is a "project(Project)" command on the first line. This warning is for project developers. Use -Wno-dev to suppress it. >> CMAKE identifies C++ compiler as 'GNU', interpreting this as 'gcc' >> To change, set CXX and CC environment variables (or pass -DCMAKE_CXX_COMPILER) and do a clean rebuild. >> current settings: CXX='' CC='' -- Compiler: gcc Updating submodules needed for compilation. -- Configuring done -- Generating done -- Build files have been written to: /home/benchmark/rosetta/source/cmake/build_debug ninja: Entering directory `/home/benchmark/rosetta/source/cmake/build_debug' [1/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNN.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNN.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNN.cc.o -c /home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNN.cc [2/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/util.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/util.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/util.cc.o -c /home/benchmark/rosetta/source/src/protocols/protein_mpnn/util.cc [3/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/init.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/init.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/init.cc.o -c /home/benchmark/rosetta/source/src/basic/init.cc [4/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/pymol_chains.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/pymol_chains.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/pymol_chains.cc.o -c /home/benchmark/rosetta/source/src/basic/pymol_chains.cc [5/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/basic.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/basic.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/basic.cc.o -c /home/benchmark/rosetta/source/src/basic/basic.cc [6/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/interpolate.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/interpolate.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/interpolate.cc.o -c /home/benchmark/rosetta/source/src/basic/interpolate.cc [7/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/citation_manager/CitationCollectionBase.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/citation_manager/CitationCollectionBase.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/citation_manager/CitationCollectionBase.cc.o -c /home/benchmark/rosetta/source/src/basic/citation_manager/CitationCollectionBase.cc [8/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/TracerToFile.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/TracerToFile.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/TracerToFile.cc.o -c /home/benchmark/rosetta/source/src/basic/TracerToFile.cc [9/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/Emitter.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/Emitter.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/Emitter.cc.o -c /home/benchmark/rosetta/source/src/basic/Emitter.cc [10/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/MemTracer.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/MemTracer.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/MemTracer.cc.o -c /home/benchmark/rosetta/source/src/basic/MemTracer.cc [11/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/claims/DofClaim.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/claims/DofClaim.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/claims/DofClaim.cc.o -c /home/benchmark/rosetta/source/src/protocols/topology_broker/claims/DofClaim.cc [12/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/Tracer.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/Tracer.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/Tracer.cc.o -c /home/benchmark/rosetta/source/src/basic/Tracer.cc [13/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/trRosetta_protocols/constraint_generators/trRosettaConstraintGenerator.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/trRosetta_protocols/constraint_generators/trRosettaConstraintGenerator.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/trRosetta_protocols/constraint_generators/trRosettaConstraintGenerator.cc.o -c /home/benchmark/rosetta/source/src/protocols/trRosetta_protocols/constraint_generators/trRosettaConstraintGenerator.cc [14/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/citation_manager/CitationCollection.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/citation_manager/CitationCollection.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/citation_manager/CitationCollection.cc.o -c /home/benchmark/rosetta/source/src/basic/citation_manager/CitationCollection.cc [15/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/citation_manager/UnpublishedModuleAuthor.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/citation_manager/UnpublishedModuleAuthor.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/citation_manager/UnpublishedModuleAuthor.cc.o -c /home/benchmark/rosetta/source/src/basic/citation_manager/UnpublishedModuleAuthor.cc [16/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/Column.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/Column.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/Column.cc.o -c /home/benchmark/rosetta/source/src/basic/database/schema_generator/Column.cc [17/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/report.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/report.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/report.cc.o -c /home/benchmark/rosetta/source/src/basic/report.cc [18/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/execute.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/execute.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/execute.cc.o -c /home/benchmark/rosetta/source/src/basic/execute.cc [19/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/Constraint.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/Constraint.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/Constraint.cc.o -c /home/benchmark/rosetta/source/src/basic/database/schema_generator/Constraint.cc [20/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/citation_manager/UnpublishedModuleInfo.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/citation_manager/UnpublishedModuleInfo.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/citation_manager/UnpublishedModuleInfo.cc.o -c /home/benchmark/rosetta/source/src/basic/citation_manager/UnpublishedModuleInfo.cc [21/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/insert_statement_generator/RowData.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/insert_statement_generator/RowData.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/insert_statement_generator/RowData.cc.o -c /home/benchmark/rosetta/source/src/basic/database/insert_statement_generator/RowData.cc [22/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/PrimaryKey.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/PrimaryKey.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/PrimaryKey.cc.o -c /home/benchmark/rosetta/source/src/basic/database/schema_generator/PrimaryKey.cc [23/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableData.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableData.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableData.cc.o -c /home/benchmark/rosetta/source/src/basic/datacache/CacheableData.cc [24/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/ForeignKey.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/ForeignKey.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/ForeignKey.cc.o -c /home/benchmark/rosetta/source/src/basic/database/schema_generator/ForeignKey.cc [25/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/TracerImpl.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/TracerImpl.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/TracerImpl.cc.o -c /home/benchmark/rosetta/source/src/basic/TracerImpl.cc [26/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/citation_manager/Citation.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/citation_manager/Citation.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/citation_manager/Citation.cc.o -c /home/benchmark/rosetta/source/src/basic/citation_manager/Citation.cc [27/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/Index.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/Index.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/Index.cc.o -c /home/benchmark/rosetta/source/src/basic/database/schema_generator/Index.cc [28/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableString.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableString.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableString.cc.o -c /home/benchmark/rosetta/source/src/basic/datacache/CacheableString.cc [29/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/DbDataType.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/DbDataType.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/DbDataType.cc.o -c /home/benchmark/rosetta/source/src/basic/database/schema_generator/DbDataType.cc [30/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/MetricValueIO.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/MetricValueIO.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/MetricValueIO.cc.o -c /home/benchmark/rosetta/source/src/basic/MetricValueIO.cc [31/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/insert_statement_generator/InsertGenerator.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/insert_statement_generator/InsertGenerator.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/insert_statement_generator/InsertGenerator.cc.o -c /home/benchmark/rosetta/source/src/basic/database/insert_statement_generator/InsertGenerator.cc [32/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/BasicDataCache.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/BasicDataCache.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/BasicDataCache.cc.o -c /home/benchmark/rosetta/source/src/basic/datacache/BasicDataCache.cc [33/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableStringFloatMap.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableStringFloatMap.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableStringFloatMap.cc.o -c /home/benchmark/rosetta/source/src/basic/datacache/CacheableStringFloatMap.cc [34/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableStringIntegerMap.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableStringIntegerMap.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableStringIntegerMap.cc.o -c /home/benchmark/rosetta/source/src/basic/datacache/CacheableStringIntegerMap.cc [35/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/DataMapObj.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/DataMapObj.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/DataMapObj.cc.o -c /home/benchmark/rosetta/source/src/basic/datacache/DataMapObj.cc [36/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/gpu/GPU.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/gpu/GPU.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/gpu/GPU.cc.o -c /home/benchmark/rosetta/source/src/basic/gpu/GPU.cc [37/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableResRotPairFloatMap.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableResRotPairFloatMap.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableResRotPairFloatMap.cc.o -c /home/benchmark/rosetta/source/src/basic/datacache/CacheableResRotPairFloatMap.cc [38/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableStringMap.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableStringMap.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableStringMap.cc.o -c /home/benchmark/rosetta/source/src/basic/datacache/CacheableStringMap.cc [39/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/citation_manager/CitationManager.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/citation_manager/CitationManager.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/citation_manager/CitationManager.cc.o -c /home/benchmark/rosetta/source/src/basic/citation_manager/CitationManager.cc [40/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableUint64MathMatrixFloatMap.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableUint64MathMatrixFloatMap.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/CacheableUint64MathMatrixFloatMap.cc.o -c /home/benchmark/rosetta/source/src/basic/datacache/CacheableUint64MathMatrixFloatMap.cc [41/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/WriteableCacheableDataCreator.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/WriteableCacheableDataCreator.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/WriteableCacheableDataCreator.cc.o -c /home/benchmark/rosetta/source/src/basic/datacache/WriteableCacheableDataCreator.cc [42/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/WriteableCacheableData.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/WriteableCacheableData.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/WriteableCacheableData.cc.o -c /home/benchmark/rosetta/source/src/basic/datacache/WriteableCacheableData.cc [43/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/DiagnosticData.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/DiagnosticData.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/DiagnosticData.cc.o -c /home/benchmark/rosetta/source/src/basic/datacache/DiagnosticData.cc [44/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/Schema.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/Schema.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/schema_generator/Schema.cc.o -c /home/benchmark/rosetta/source/src/basic/database/schema_generator/Schema.cc [45/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/selectors/ProteinResidueSelector.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/selectors/ProteinResidueSelector.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/selectors/ProteinResidueSelector.cc.o -c /home/benchmark/rosetta/source/src/protocols/fold_from_loops/selectors/ProteinResidueSelector.cc [46/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/HierarchicalDataMap.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/HierarchicalDataMap.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/HierarchicalDataMap.cc.o -c /home/benchmark/rosetta/source/src/basic/datacache/HierarchicalDataMap.cc [47/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLoaderCreator.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLoaderCreator.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLoaderCreator.cc.o -c /home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLoaderCreator.cc [48/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/gpu/Timer.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/gpu/Timer.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/gpu/Timer.cc.o -c /home/benchmark/rosetta/source/src/basic/gpu/Timer.cc [49/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/mpi/util.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/mpi/util.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/mpi/util.cc.o -c /home/benchmark/rosetta/source/src/basic/mpi/util.cc [50/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/DataMap.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/DataMap.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/DataMap.cc.o -c /home/benchmark/rosetta/source/src/basic/datacache/DataMap.cc [51/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/WriteableCacheableDataFactory.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/WriteableCacheableDataFactory.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/WriteableCacheableDataFactory.cc.o -c /home/benchmark/rosetta/source/src/basic/datacache/WriteableCacheableDataFactory.cc [52/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/WriteableCacheableMap.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/WriteableCacheableMap.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/WriteableCacheableMap.cc.o -c /home/benchmark/rosetta/source/src/basic/datacache/WriteableCacheableMap.cc [53/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/ConstDataMap.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/ConstDataMap.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/datacache/ConstDataMap.cc.o -c /home/benchmark/rosetta/source/src/basic/datacache/ConstDataMap.cc [54/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/ReleaseConstraintFromResidueMover.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/ReleaseConstraintFromResidueMover.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/ReleaseConstraintFromResidueMover.cc.o -c /home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/ReleaseConstraintFromResidueMover.cc [55/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/mpi/MessageListenerFactory.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/mpi/MessageListenerFactory.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/mpi/MessageListenerFactory.cc.o -c /home/benchmark/rosetta/source/src/basic/mpi/MessageListenerFactory.cc [56/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/SavePDBInfoMover.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/SavePDBInfoMover.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/SavePDBInfoMover.cc.o -c /home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/SavePDBInfoMover.cc [57/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/constraint_generator/SegmentedAtomPairConstraintGenerator.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/constraint_generator/SegmentedAtomPairConstraintGenerator.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/constraint_generator/SegmentedAtomPairConstraintGenerator.cc.o -c /home/benchmark/rosetta/source/src/protocols/fold_from_loops/constraint_generator/SegmentedAtomPairConstraintGenerator.cc [58/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/ResidueLabelsToPymolSelectionMover.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/ResidueLabelsToPymolSelectionMover.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/ResidueLabelsToPymolSelectionMover.cc.o -c /home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/ResidueLabelsToPymolSelectionMover.cc [59/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/selectors/ConstraintResidueSelector.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/selectors/ConstraintResidueSelector.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/selectors/ConstraintResidueSelector.cc.o -c /home/benchmark/rosetta/source/src/protocols/fold_from_loops/selectors/ConstraintResidueSelector.cc [60/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/LabelPoseFromResidueSelectorMover.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/LabelPoseFromResidueSelectorMover.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/LabelPoseFromResidueSelectorMover.cc.o -c /home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/LabelPoseFromResidueSelectorMover.cc [61/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/filters/ConstraintFulfilmentFilter.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/filters/ConstraintFulfilmentFilter.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/filters/ConstraintFulfilmentFilter.cc.o -c /home/benchmark/rosetta/source/src/protocols/fold_from_loops/filters/ConstraintFulfilmentFilter.cc [62/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/ComparingTracer.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/ComparingTracer.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/ComparingTracer.cc.o -c /home/benchmark/rosetta/source/src/basic/ComparingTracer.cc [63/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/MoveMapFactoryToNamedMoveMapMover.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/MoveMapFactoryToNamedMoveMapMover.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/MoveMapFactoryToNamedMoveMapMover.cc.o -c /home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/MoveMapFactoryToNamedMoveMapMover.cc [64/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/mpi/DbMoverMessageListener.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/mpi/DbMoverMessageListener.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/mpi/DbMoverMessageListener.cc.o -c /home/benchmark/rosetta/source/src/basic/mpi/DbMoverMessageListener.cc [65/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/selectors/CutpointResidueSelector.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/selectors/CutpointResidueSelector.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/selectors/CutpointResidueSelector.cc.o -c /home/benchmark/rosetta/source/src/protocols/fold_from_loops/selectors/CutpointResidueSelector.cc [66/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys0.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys0.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys0.cc.o -c /home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys0.cc [67/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys1.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys1.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys1.cc.o -c /home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys1.cc [68/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLoader.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLoader.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLoader.cc.o -c /home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLoader.cc [69/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys10.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys10.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys10.cc.o -c /home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys10.cc [70/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys11.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys11.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys11.cc.o -c /home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys11.cc [71/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/AlignByResidueSelectorMover.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/AlignByResidueSelectorMover.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/AlignByResidueSelectorMover.cc.o -c /home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/AlignByResidueSelectorMover.cc [72/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys12.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys12.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys12.cc.o -c /home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys12.cc [73/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLocatorCreator.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLocatorCreator.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLocatorCreator.cc.o -c /home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLocatorCreator.cc [74/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceManagerCreator.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceManagerCreator.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceManagerCreator.cc.o -c /home/benchmark/rosetta/source/src/basic/resource_manager/ResourceManagerCreator.cc [75/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys13.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys13.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys13.cc.o -c /home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys13.cc [76/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLocator.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLocator.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLocator.cc.o -c /home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLocator.cc [77/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys15.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys15.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys15.cc.o -c /home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys15.cc [78/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys14.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys14.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys14.cc.o -c /home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys14.cc [79/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TopologyClaimer.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TopologyClaimer.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TopologyClaimer.cc.o -c /home/benchmark/rosetta/source/src/protocols/topology_broker/TopologyClaimer.cc [80/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys2.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys2.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys2.cc.o -c /home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys2.cc [81/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLoaderFactory.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLoaderFactory.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLoaderFactory.cc.o -c /home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLoaderFactory.cc [82/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/trRosetta_protocols/movers/trRosettaProtocolMover.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/trRosetta_protocols/movers/trRosettaProtocolMover.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/trRosetta_protocols/movers/trRosettaProtocolMover.cc.o -c /home/benchmark/rosetta/source/src/protocols/trRosetta_protocols/movers/trRosettaProtocolMover.cc [83/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/prof.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/prof.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/prof.cc.o -c /home/benchmark/rosetta/source/src/basic/prof.cc [84/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys4.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys4.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys4.cc.o -c /home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys4.cc [85/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys3.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys3.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys3.cc.o -c /home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys3.cc [86/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/tensorflow_manager/RosettaTensorflowTensorContainer.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/tensorflow_manager/RosettaTensorflowTensorContainer.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/tensorflow_manager/RosettaTensorflowTensorContainer.cc.o -c /home/benchmark/rosetta/source/src/basic/tensorflow_manager/RosettaTensorflowTensorContainer.cc [87/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThread.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThread.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThread.cc.o -c /home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThread.cc [88/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TopologyClaimerFactory.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TopologyClaimerFactory.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TopologyClaimerFactory.cc.o -c /home/benchmark/rosetta/source/src/protocols/topology_broker/TopologyClaimerFactory.cc [89/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThreadAssignmentInfo.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThreadAssignmentInfo.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThreadAssignmentInfo.cc.o -c /home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThreadAssignmentInfo.cc [90/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/open.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/open.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/open.cc.o -c /home/benchmark/rosetta/source/src/basic/database/open.cc [91/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThreadPool.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThreadPool.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThreadPool.cc.o -c /home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThreadPool.cc [92/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys5.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys5.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys5.cc.o -c /home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys5.cc [93/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLocatorFactory.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLocatorFactory.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLocatorFactory.cc.o -c /home/benchmark/rosetta/source/src/basic/resource_manager/ResourceLocatorFactory.cc [94/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/locator/StringResourceStream.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/locator/StringResourceStream.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/locator/StringResourceStream.cc.o -c /home/benchmark/rosetta/source/src/basic/resource_manager/locator/StringResourceStream.cc [95/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/tensorflow_manager/RosettaTensorflowProtocolBase.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/tensorflow_manager/RosettaTensorflowProtocolBase.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/tensorflow_manager/RosettaTensorflowProtocolBase.cc.o -c /home/benchmark/rosetta/source/src/basic/tensorflow_manager/RosettaTensorflowProtocolBase.cc [96/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/loader_schemas.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/loader_schemas.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/loader_schemas.cc.o -c /home/benchmark/rosetta/source/src/basic/resource_manager/loader_schemas.cc [97/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys6.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys6.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys6.cc.o -c /home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys6.cc [98/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys7.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys7.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys7.cc.o -c /home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys7.cc [99/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys8.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys8.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys8.cc.o -c /home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys8.cc [100/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceManagerFactory.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceManagerFactory.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceManagerFactory.cc.o -c /home/benchmark/rosetta/source/src/basic/resource_manager/ResourceManagerFactory.cc [101/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/locator/locator_schemas.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/locator/locator_schemas.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/locator/locator_schemas.cc.o -c /home/benchmark/rosetta/source/src/basic/resource_manager/locator/locator_schemas.cc [102/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/InitCluster.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/InitCluster.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/InitCluster.cc.o -c /home/benchmark/rosetta/source/src/protocols/cluster/calibur/InitCluster.cc [103/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TemplateFragmentClaimer.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TemplateFragmentClaimer.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TemplateFragmentClaimer.cc.o -c /home/benchmark/rosetta/source/src/protocols/topology_broker/TemplateFragmentClaimer.cc [104/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys9.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys9.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys9.cc.o -c /home/benchmark/rosetta/source/src/basic/options/keys/OptionKeys9.cc [105/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/cubic.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/cubic.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/cubic.cc.o -c /home/benchmark/rosetta/source/src/protocols/cluster/calibur/cubic.cc [106/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/tensorflow_manager/RosettaTensorflowManager.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/tensorflow_manager/RosettaTensorflowManager.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/tensorflow_manager/RosettaTensorflowManager.cc.o -c /home/benchmark/rosetta/source/src/basic/tensorflow_manager/RosettaTensorflowManager.cc [107/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/tensorflow_manager/RosettaTensorflowSessionContainer.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/tensorflow_manager/RosettaTensorflowSessionContainer.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/tensorflow_manager/RosettaTensorflowSessionContainer.cc.o -c /home/benchmark/rosetta/source/src/basic/tensorflow_manager/RosettaTensorflowSessionContainer.cc [108/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThreadAllocation.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThreadAllocation.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThreadAllocation.cc.o -c /home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThreadAllocation.cc [109/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_8_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols.8.dir/home/benchmark/rosetta/source/src/protocols/init/init.cc.o -MF CMakeFiles/protocols.8.dir/home/benchmark/rosetta/source/src/protocols/init/init.cc.o.d -o CMakeFiles/protocols.8.dir/home/benchmark/rosetta/source/src/protocols/init/init.cc.o -c /home/benchmark/rosetta/source/src/protocols/init/init.cc [110/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/constraint_generator/AutomaticSheetConstraintGenerator.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/constraint_generator/AutomaticSheetConstraintGenerator.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/constraint_generator/AutomaticSheetConstraintGenerator.cc.o -c /home/benchmark/rosetta/source/src/protocols/fold_from_loops/constraint_generator/AutomaticSheetConstraintGenerator.cc [111/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/jacobi.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/jacobi.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/jacobi.cc.o -c /home/benchmark/rosetta/source/src/protocols/cluster/calibur/jacobi.cc [112/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNNMover.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNNMover.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNNMover.cc.o -c /home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNNMover.cc [113/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThreadManager.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThreadManager.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThreadManager.cc.o -c /home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThreadManager.cc [114/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/rmsd.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/rmsd.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/rmsd.cc.o -c /home/benchmark/rosetta/source/src/protocols/cluster/calibur/rmsd.cc [115/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/svd/SVD_Solver.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/svd/SVD_Solver.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/svd/SVD_Solver.cc.o -c /home/benchmark/rosetta/source/src/basic/svd/SVD_Solver.cc [116/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/pdb_util.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/pdb_util.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/pdb_util.cc.o -c /home/benchmark/rosetta/source/src/protocols/cluster/calibur/pdb_util.cc [117/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/AdjacentList.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/AdjacentList.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/AdjacentList.cc.o -c /home/benchmark/rosetta/source/src/protocols/cluster/calibur/AdjacentList.cc [118/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/locator/NullResourceLocator.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/locator/NullResourceLocator.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/locator/NullResourceLocator.cc.o -c /home/benchmark/rosetta/source/src/basic/resource_manager/locator/NullResourceLocator.cc [119/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/SimPDB.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/SimPDB.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/SimPDB.cc.o -c /home/benchmark/rosetta/source/src/protocols/cluster/calibur/SimPDB.cc [120/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/tensorflow_manager/util.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/tensorflow_manager/util.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/tensorflow_manager/util.cc.o -c /home/benchmark/rosetta/source/src/basic/tensorflow_manager/util.cc [121/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/sql_utils.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/sql_utils.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/database/sql_utils.cc.o -c /home/benchmark/rosetta/source/src/basic/database/sql_utils.cc [122/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/PreloadedPDB.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/PreloadedPDB.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/PreloadedPDB.cc.o -c /home/benchmark/rosetta/source/src/protocols/cluster/calibur/PreloadedPDB.cc [123/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/filters/ScorePoseSegmentFromResidueSelectorFilter.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/filters/ScorePoseSegmentFromResidueSelectorFilter.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/filters/ScorePoseSegmentFromResidueSelectorFilter.cc.o -c /home/benchmark/rosetta/source/src/protocols/fold_from_loops/filters/ScorePoseSegmentFromResidueSelectorFilter.cc [124/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/locator/FileListResourceLocator.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/locator/FileListResourceLocator.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/locator/FileListResourceLocator.cc.o -c /home/benchmark/rosetta/source/src/basic/resource_manager/locator/FileListResourceLocator.cc [125/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/APCluster.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/APCluster.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/APCluster.cc.o -c /home/benchmark/rosetta/source/src/protocols/cluster/APCluster.cc [126/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/DisplayPoseLabelsMover.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/DisplayPoseLabelsMover.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/DisplayPoseLabelsMover.cc.o -c /home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/DisplayPoseLabelsMover.cc [127/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/locator/DatabaseResourceLocator.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/locator/DatabaseResourceLocator.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/locator/DatabaseResourceLocator.cc.o -c /home/benchmark/rosetta/source/src/basic/resource_manager/locator/DatabaseResourceLocator.cc [128/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNNProbabilitiesMetric.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNNProbabilitiesMetric.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNNProbabilitiesMetric.cc.o -c /home/benchmark/rosetta/source/src/protocols/protein_mpnn/ProteinMPNNProbabilitiesMetric.cc [129/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/sampling/orientations/QuaternionGrid.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/sampling/orientations/QuaternionGrid.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/sampling/orientations/QuaternionGrid.cc.o -c /home/benchmark/rosetta/source/src/basic/sampling/orientations/QuaternionGrid.cc [130/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/after_opts.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/after_opts.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/after_opts.cc.o -c /home/benchmark/rosetta/source/src/basic/options/after_opts.cc [131/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/methods/fragment_functions.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/methods/fragment_functions.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/methods/fragment_functions.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/methods/fragment_functions.cc [132/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/utils/utils.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/utils/utils.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/utils/utils.cc.o -c /home/benchmark/rosetta/source/src/protocols/fold_from_loops/utils/utils.cc [133/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/RelativeConnectRight.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/RelativeConnectRight.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/RelativeConnectRight.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/build/RelativeConnectRight.cc [134/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/Clustering.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/Clustering.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/calibur/Clustering.cc.o -c /home/benchmark/rosetta/source/src/protocols/cluster/calibur/Clustering.cc [135/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/SplitAndMixPoseMover.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/SplitAndMixPoseMover.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/SplitAndMixPoseMover.cc.o -c /home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/SplitAndMixPoseMover.cc [136/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/filters/RmsdFromResidueSelectorFilter.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/filters/RmsdFromResidueSelectorFilter.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/filters/RmsdFromResidueSelectorFilter.cc.o -c /home/benchmark/rosetta/source/src/protocols/fold_from_loops/filters/RmsdFromResidueSelectorFilter.cc [137/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/PyRosettaFunctions.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/PyRosettaFunctions.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/PyRosettaFunctions.cc.o -c /home/benchmark/rosetta/source/src/basic/options/PyRosettaFunctions.cc [138/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/random/init_random_generator.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/random/init_random_generator.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/random/init_random_generator.cc.o -c /home/benchmark/rosetta/source/src/basic/random/init_random_generator.cc [139/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/random/RandomGeneratorSettings.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/random/RandomGeneratorSettings.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/random/RandomGeneratorSettings.cc.o -c /home/benchmark/rosetta/source/src/basic/random/RandomGeneratorSettings.cc [140/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/util.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/util.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/util.cc.o -c /home/benchmark/rosetta/source/src/protocols/topology_broker/util.cc [141/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TemplateJumpClaimer.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TemplateJumpClaimer.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TemplateJumpClaimer.cc.o -c /home/benchmark/rosetta/source/src/protocols/topology_broker/TemplateJumpClaimer.cc [142/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/NubInitioLoopClosureMover.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/NubInitioLoopClosureMover.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/NubInitioLoopClosureMover.cc.o -c /home/benchmark/rosetta/source/src/protocols/fold_from_loops/movers/NubInitioLoopClosureMover.cc [143/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/constraints/InverseRotamersRCG.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/constraints/InverseRotamersRCG.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/constraints/InverseRotamersRCG.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/constraints/InverseRotamersRCG.cc [144/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThreadManagerInitializationTracker.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThreadManagerInitializationTracker.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThreadManagerInitializationTracker.cc.o -c /home/benchmark/rosetta/source/src/basic/thread_manager/RosettaThreadManagerInitializationTracker.cc [145/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/constraints/NtoCConstraintGenerator.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/constraints/NtoCConstraintGenerator.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/constraints/NtoCConstraintGenerator.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/constraints/NtoCConstraintGenerator.cc [146/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/utils/Nub.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/utils/Nub.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/utils/Nub.cc.o -c /home/benchmark/rosetta/source/src/protocols/fold_from_loops/utils/Nub.cc [147/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/locator/FileSystemResourceLocator.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/locator/FileSystemResourceLocator.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/locator/FileSystemResourceLocator.cc.o -c /home/benchmark/rosetta/source/src/basic/resource_manager/locator/FileSystemResourceLocator.cc [148/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/constraints/RemoveRemodelCsts.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/constraints/RemoveRemodelCsts.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/constraints/RemoveRemodelCsts.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/constraints/RemoveRemodelCsts.cc [149/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelConstraintGenerator.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelConstraintGenerator.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelConstraintGenerator.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelConstraintGenerator.cc [150/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/BuildInstruction.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/BuildInstruction.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/BuildInstruction.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/build/BuildInstruction.cc [151/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/GrowRight.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/GrowRight.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/GrowRight.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/build/GrowRight.cc [152/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_8_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols.8.dir/home/benchmark/rosetta/source/src/protocols/init/register2.cc.o -MF CMakeFiles/protocols.8.dir/home/benchmark/rosetta/source/src/protocols/init/register2.cc.o.d -o CMakeFiles/protocols.8.dir/home/benchmark/rosetta/source/src/protocols/init/register2.cc.o -c /home/benchmark/rosetta/source/src/protocols/init/register2.cc [153/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/GrowLeft.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/GrowLeft.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/GrowLeft.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/build/GrowLeft.cc [154/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/constraints/InvrotTreeRCG.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/constraints/InvrotTreeRCG.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/constraints/InvrotTreeRCG.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/constraints/InvrotTreeRCG.cc [155/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/Bridge.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/Bridge.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/Bridge.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/build/Bridge.cc [156/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/methods/chainbreak_eval.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/methods/chainbreak_eval.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/methods/chainbreak_eval.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/methods/chainbreak_eval.cc [157/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashLibraryLoader.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashLibraryLoader.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashLibraryLoader.cc.o -c /home/benchmark/rosetta/source/src/protocols/loophash/LoopHashLibraryLoader.cc [158/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceManager.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceManager.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/resource_manager/ResourceManager.cc.o -c /home/benchmark/rosetta/source/src/basic/resource_manager/ResourceManager.cc [159/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/ConnectRight.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/ConnectRight.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/ConnectRight.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/build/ConnectRight.cc [160/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LocalInserter.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LocalInserter.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LocalInserter.cc.o -c /home/benchmark/rosetta/source/src/protocols/loophash/LocalInserter.cc [161/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/motifs/LigandDiscoverySearch.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/motifs/LigandDiscoverySearch.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/motifs/LigandDiscoverySearch.cc.o -c /home/benchmark/rosetta/source/src/protocols/motifs/LigandDiscoverySearch.cc FAILED: CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/motifs/LigandDiscoverySearch.cc.o /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/motifs/LigandDiscoverySearch.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/motifs/LigandDiscoverySearch.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/motifs/LigandDiscoverySearch.cc.o -c /home/benchmark/rosetta/source/src/protocols/motifs/LigandDiscoverySearch.cc In file included from /home/benchmark/rosetta/source/src/protocols/motifs/LigandDiscoverySearch.cc:131:0: ../../src/protocols/motifs/LigandDiscoverySearch.hh:261:7: error: extra qualification ‘LigandDiscoverySearch::’ on member ‘hash_motif_library_into_map’ [-fpermissive] void LigandDiscoverySearch::hash_motif_library_into_map(protocols::motifs::MotifCOPs & input_library, std::map<motif_atoms, protocols::motifs::MotifCOPs> & mymap) ^ ../../src/protocols/motifs/LigandDiscoverySearch.hh:261:163: error: expected ‘;’ at end of member declaration void LigandDiscoverySearch::hash_motif_library_into_map(protocols::motifs::MotifCOPs & input_library, std::map<motif_atoms, protocols::motifs::MotifCOPs> & mymap) ^ [162/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/ResidueVicinityRCG.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/ResidueVicinityRCG.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/ResidueVicinityRCG.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/remodel/ResidueVicinityRCG.cc [163/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/SegmentSwap.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/SegmentSwap.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/SegmentSwap.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/build/SegmentSwap.cc [164/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/FastGapMover.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/FastGapMover.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/FastGapMover.cc.o -c /home/benchmark/rosetta/source/src/protocols/loophash/FastGapMover.cc [165/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelRotamerLinks.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelRotamerLinks.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelRotamerLinks.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelRotamerLinks.cc [166/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/methods/fold_tree_functions.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/methods/fold_tree_functions.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/methods/fold_tree_functions.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/methods/fold_tree_functions.cc [167/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/pockets/FingerprintMultifunc.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/pockets/FingerprintMultifunc.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/pockets/FingerprintMultifunc.cc.o -c /home/benchmark/rosetta/source/src/protocols/pockets/FingerprintMultifunc.cc [168/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/components/BDR.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/components/BDR.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/components/BDR.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/components/BDR.cc [169/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loop_modeler/perturbers/LoopHashPerturber.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loop_modeler/perturbers/LoopHashPerturber.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loop_modeler/perturbers/LoopHashPerturber.cc.o -c /home/benchmark/rosetta/source/src/protocols/loop_modeler/perturbers/LoopHashPerturber.cc [170/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelAccumulator.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelAccumulator.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelAccumulator.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelAccumulator.cc [171/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/util.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/util.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/util.cc.o -c /home/benchmark/rosetta/source/src/basic/options/util.cc [172/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/methods/pose_mod.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/methods/pose_mod.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/methods/pose_mod.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/methods/pose_mod.cc [173/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/NubInitioMover.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/NubInitioMover.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/fold_from_loops/NubInitioMover.cc.o -c /home/benchmark/rosetta/source/src/protocols/fold_from_loops/NubInitioMover.cc [174/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelLigandHandler.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelLigandHandler.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelLigandHandler.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelLigandHandler.cc [175/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/MPI_LoopHashRefine_Emperor.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/MPI_LoopHashRefine_Emperor.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/MPI_LoopHashRefine_Emperor.cc.o -c /home/benchmark/rosetta/source/src/protocols/loophash/MPI_LoopHashRefine_Emperor.cc [176/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_6_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TopologyBroker.cc.o -MF CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TopologyBroker.cc.o.d -o CMakeFiles/protocols_b.6.dir/home/benchmark/rosetta/source/src/protocols/topology_broker/TopologyBroker.cc.o -c /home/benchmark/rosetta/source/src/protocols/topology_broker/TopologyBroker.cc [177/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelData.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelData.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelData.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelData.cc [178/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashRelaxProtocol.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashRelaxProtocol.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashRelaxProtocol.cc.o -c /home/benchmark/rosetta/source/src/protocols/loophash/LoopHashRelaxProtocol.cc [179/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/SegmentInsert.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/SegmentInsert.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/SegmentInsert.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/build/SegmentInsert.cc [180/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashDiversifier.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashDiversifier.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashDiversifier.cc.o -c /home/benchmark/rosetta/source/src/protocols/loophash/LoopHashDiversifier.cc [181/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/SegmentRebuild.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/SegmentRebuild.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/SegmentRebuild.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/build/SegmentRebuild.cc [182/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/BuildManager.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/BuildManager.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/build/BuildManager.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/build/BuildManager.cc [183/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelEnzdesCstModule.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelEnzdesCstModule.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelEnzdesCstModule.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelEnzdesCstModule.cc [184/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/BackboneDB.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/BackboneDB.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/BackboneDB.cc.o -c /home/benchmark/rosetta/source/src/protocols/loophash/BackboneDB.cc [185/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/cluster.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/cluster.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/cluster/cluster.cc.o -c /home/benchmark/rosetta/source/src/protocols/cluster/cluster.cc [186/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelWorkingSet.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelWorkingSet.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelWorkingSet.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelWorkingSet.cc [187/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashMoverWrapper.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashMoverWrapper.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashMoverWrapper.cc.o -c /home/benchmark/rosetta/source/src/protocols/loophash/LoopHashMoverWrapper.cc [188/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/Mover_LoopHashRefine.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/Mover_LoopHashRefine.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/Mover_LoopHashRefine.cc.o -c /home/benchmark/rosetta/source/src/protocols/loophash/Mover_LoopHashRefine.cc [189/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/methods/util.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/methods/util.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/methods/util.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/methods/util.cc [190/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/MPI_LoopHashRefine_Master.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/MPI_LoopHashRefine_Master.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/MPI_LoopHashRefine_Master.cc.o -c /home/benchmark/rosetta/source/src/protocols/loophash/MPI_LoopHashRefine_Master.cc [191/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashMap.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashMap.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashMap.cc.o -c /home/benchmark/rosetta/source/src/protocols/loophash/LoopHashMap.cc [192/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loop_modeler/LoopModeler.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loop_modeler/LoopModeler.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loop_modeler/LoopModeler.cc.o -c /home/benchmark/rosetta/source/src/protocols/loop_modeler/LoopModeler.cc [193/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashSampler.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashSampler.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashSampler.cc.o -c /home/benchmark/rosetta/source/src/protocols/loophash/LoopHashSampler.cc [194/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/pockets/DarcParticleSwarmMinimizer.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/pockets/DarcParticleSwarmMinimizer.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/pockets/DarcParticleSwarmMinimizer.cc.o -c /home/benchmark/rosetta/source/src/protocols/pockets/DarcParticleSwarmMinimizer.cc [195/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashLibrary.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashLibrary.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/LoopHashLibrary.cc.o -c /home/benchmark/rosetta/source/src/protocols/loophash/LoopHashLibrary.cc [196/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelDesignMover.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelDesignMover.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelDesignMover.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelDesignMover.cc [197/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/components/VarLengthBuild.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/components/VarLengthBuild.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/components/VarLengthBuild.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/components/VarLengthBuild.cc [198/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dbasic_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/option.cc.o -MF CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/option.cc.o.d -o CMakeFiles/basic.dir/home/benchmark/rosetta/source/src/basic/options/option.cc.o -c /home/benchmark/rosetta/source/src/basic/options/option.cc [199/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/pockets/Fingerprint.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/pockets/Fingerprint.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/pockets/Fingerprint.cc.o -c /home/benchmark/rosetta/source/src/protocols/pockets/Fingerprint.cc [200/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/WorkUnit_LoopHash.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/WorkUnit_LoopHash.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/WorkUnit_LoopHash.cc.o -c /home/benchmark/rosetta/source/src/protocols/loophash/WorkUnit_LoopHash.cc [201/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/pockets/GenPharmacophore.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/pockets/GenPharmacophore.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/pockets/GenPharmacophore.cc.o -c /home/benchmark/rosetta/source/src/protocols/pockets/GenPharmacophore.cc [202/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/MPI_LoopHashRefine.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/MPI_LoopHashRefine.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/loophash/MPI_LoopHashRefine.cc.o -c /home/benchmark/rosetta/source/src/protocols/loophash/MPI_LoopHashRefine.cc [203/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelLoopMover.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelLoopMover.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelLoopMover.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelLoopMover.cc [204/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_8_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols.8.dir/home/benchmark/rosetta/source/src/protocols/init/register1.cc.o -MF CMakeFiles/protocols.8.dir/home/benchmark/rosetta/source/src/protocols/init/register1.cc.o.d -o CMakeFiles/protocols.8.dir/home/benchmark/rosetta/source/src/protocols/init/register1.cc.o -c /home/benchmark/rosetta/source/src/protocols/init/register1.cc [205/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelMover.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelMover.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelMover.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelMover.cc [206/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_b_5_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelGlobalFrame.cc.o -MF CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelGlobalFrame.cc.o.d -o CMakeFiles/protocols_b.5.dir/home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelGlobalFrame.cc.o -c /home/benchmark/rosetta/source/src/protocols/forge/remodel/RemodelGlobalFrame.cc [207/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_8_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols.8.dir/home/benchmark/rosetta/source/src/protocols/init/register3.cc.o -MF CMakeFiles/protocols.8.dir/home/benchmark/rosetta/source/src/protocols/init/register3.cc.o.d -o CMakeFiles/protocols.8.dir/home/benchmark/rosetta/source/src/protocols/init/register3.cc.o -c /home/benchmark/rosetta/source/src/protocols/init/register3.cc [208/4540] /usr/bin/c++ -DBOOST_DISABLE_THREADS -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DCPPDB_EXPORTS -DCPPDB_LIBRARY_PREFIX=\"lib\" -DCPPDB_LIBRARY_SUFFIX=\".so\" -DCPPDB_MAJOR=0 -DCPPDB_MINOR=3 -DCPPDB_PATCH=0 -DCPPDB_SOVERSION=\"0\" -DCPPDB_VERSION=\"0.3.0\" -DCPPDB_WITH_SQLITE3 -DCXX11 -DLINUX -DPTR_STD -DSQLITE_OMIT_DISABLE_LFS -DSQLITE_OMIT_LOAD_EXTENSION -DSQLITE_THREADSAFE=0 -D_DEBUG -D_GLIBCXX_DEBUG -Dprotocols_8_EXPORTS -I../.. -I../../src -I../../src/platform/linux -I../../test -isystem ../../external -isystem ../../external/include -isystem ../../external/dbio -isystem ../../external/rdkit -isystem ../../external/boost_submod -isystem ../../external/cxxtest -isystem ../../external/dbio/sqlite3 -isystem ../../external/libxml2/include -std=c++11 -pipe -ffor-scope -ftemplate-depth-256 -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -I /usr/include -I /usr/local/include -I src -I external/include -I src/platform/linux -O0 -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -g -ggdb -ffloat-store -g -fPIC -MD -MT CMakeFiles/protocols.8.dir/home/benchmark/rosetta/source/src/protocols/init/register4.cc.o -MF CMakeFiles/protocols.8.dir/home/benchmark/rosetta/source/src/protocols/init/register4.cc.o.d -o CMakeFiles/protocols.8.dir/home/benchmark/rosetta/source/src/protocols/init/register4.cc.o -c /home/benchmark/rosetta/source/src/protocols/init/register4.cc ninja: build stopped: subcommand failed. Traceback (most recent call last): File "./ninja_build.py", line 132, in <module> subprocess.check_call(ninja_command) File "/usr/local/lib/python3.7/subprocess.py", line 347, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['ninja', '-C', '/home/benchmark/rosetta/source/cmake/build_debug', '-j', '48', '-v']' returned non-zero exit status 1.
{}