Test: linux.clang.integration.release_debug_no_symbols 「view this page in B3 βῆτα server」
Branch: rosetta:commits 「revision: №20486」
Test files: 「file-system-view」 「file-list-view」
Daemon: hojo-2     Started at: 2024-09-18 16:21:10     Run time: 2:47:51      State: failed

Failed sub-tests (click for more details):
include_cc_check ligand_motif_discovery remove_duplicate_motifs

Compiling: find bin -type l ! -name ".*" -exec rm {} \; ; /home/benchmark/prefix/besu/linux/python-3.9.gcc/99a1a29fd465f86265a7c5b92d75dbcd/bin/python3.9 ./scons.py bin mode=release_debug_no_symbols cxx=clang extras= -j12 Running: unset __PYVENV_LAUNCHER__ && . /home/benchmark/prefix/besu/linux/python_virtual_environments/python-3.9/df3055f6f81b525b8050290cef45e968/bin/activate && cd /home/benchmark/rosetta/tests/integration && python ./integration.py --mode=release_debug_no_symbols --compiler=clang --extras= --timeout=3600 -j12 --skip-comparison --additional_flags "-in:path:database_cache_dir /home/benchmark/rosetta/.database-binaries/linuxclangrelease_debug_no_symbols" Running integration script... Command line: unset __PYVENV_LAUNCHER__ && . /home/benchmark/prefix/besu/linux/python_virtual_environments/python-3.9/df3055f6f81b525b8050290cef45e968/bin/activate && cd /home/benchmark/rosetta/tests/integration && python ./integration.py --mode=release_debug_no_symbols --compiler=clang --extras= --timeout=3600 -j12 --skip-comparison --additional_flags "-in:path:database_cache_dir /home/benchmark/rosetta/.database-binaries/linuxclangrelease_debug_no_symbols" Using Rosetta source dir at: /home/benchmark/rosetta/source Using Rosetta database dir at:/home/benchmark/rosetta/database Current Versions Tested: MAIN: a7a3305c3e9c2a41c1af583fc76bba1793956864 TOOLS: b0af2521cbed1f2bde597ef1c5406efa376a6f85 DEMOS: 48c9239db73b9a8c828954d9215c983b9f144c92 Verifying Python /usr/bin/python2 to have version 2.*... /usr/bin/python2 -c 'import sys; sys.exit(sys.version_info[0] != 2)' Verifying Python /home/benchmark/prefix/besu/linux/python_virtual_environments/python-3.9/df3055f6f81b525b8050290cef45e968/bin/python to have version 3.*... /home/benchmark/prefix/besu/linux/python_virtual_environments/python-3.9/df3055f6f81b525b8050290cef45e968/bin/python -c 'import sys; sys.exit(sys.version_info[0] != 3)' Python: `/home/benchmark/prefix/besu/linux/python_virtual_environments/python-3.9/df3055f6f81b525b8050290cef45e968/bin/python` Python2: `/usr/bin/python2` Python3: `/home/benchmark/prefix/besu/linux/python_virtual_environments/python-3.9/df3055f6f81b525b8050290cef45e968/bin/python` Outdir: new Running Test voids_penalty_energy_design_symmetry ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/voids_penalty_energy_design_symmetry/command.sh No correct command.sh file found for trRosetta_test_predict_ubiquitin_init_by_bins. Skipping. Running Test voids_penalty_energy_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/voids_penalty_energy_design/command.sh Running Test trRosetta_test_predict_ubiquitin_cst_file_write_only ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosetta_test_predict_ubiquitin_cst_file_write_only/command.sh Running Test trRosetta_test_predict_ubiquitin_cst_file_write ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosetta_test_predict_ubiquitin_cst_file_write/command.sh No correct command.sh file found for trRosetta_test_predict. Skipping. Running Test trRosetta_test_predict_ubiquitin ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosetta_test_predict_ubiquitin/command.sh Running Test trRosettaProtocolMover_rosettascripts_diskwrite_only ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosettaProtocolMover_rosettascripts_diskwrite_only/command.sh Running Test trRosettaProtocolMover_rosettascripts_diskwrite ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosettaProtocolMover_rosettascripts_diskwrite/command.sh No correct command.sh file found for trRosettaProtocolMover. Skipping. Running Test trRosettaProtocolMover_rosettascripts No correct command.sh file found for trRosettaConstraintGenerator. Skipping. ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosettaProtocolMover_rosettascripts/command.sh Running Test trRosettaConstraintGenerator_rosettascripts ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosettaConstraintGenerator_rosettascripts/command.sh No correct command.sh file found for trRosetta. Skipping. No correct command.sh file found for test_rosetta_thread_manager_basic_API. Skipping. No correct command.sh file found for test_rosetta_thread_manager_advanced_API. Skipping. Running Test tna_base_pairs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/tna_base_pairs/command.sh Running Test thread_local_tracers_check ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/thread_local_tracers_check/command.sh Running Test test_energy_method_options ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/test_energy_method_options/command.sh Finished trRosettaConstraintGenerator_rosettascripts in 0 seconds [~ 20 test (2.493765586034913%) started, 782 in queue, 12 running] Finished test_energy_method_options in 0 seconds [~ 20 test (2.493765586034913%) started, 782 in queue, 11 running] No correct command.sh file found for tensorflow_simple_model_load_and_evaluate. Skipping. No correct command.sh file found for tensorflow_manager. Skipping. No correct command.sh file found for tensorflow_connection_test. Skipping. Running Test test_degreaser ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/test_degreaser/command.sh Running Test tcrmodel ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/tcrmodel/command.sh Finished thread_local_tracers_check in 2 seconds [~ 25 test (3.117206982543641%) started, 777 in queue, 12 running] Running Test target_clash ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/target_clash/command.sh Finished trRosetta_test_predict_ubiquitin_cst_file_write_only in 10 seconds [~ 26 test (3.2418952618453867%) started, 776 in queue, 12 running] Finished trRosetta_test_predict_ubiquitin_cst_file_write in 10 seconds [~ 26 test (3.2418952618453867%) started, 776 in queue, 11 running] Finished trRosetta_test_predict_ubiquitin in 10 seconds [~ 26 test (3.2418952618453867%) started, 776 in queue, 10 running] Running Test swm_rna_checkpoint_partition ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_checkpoint_partition/command.sh Running Test swm_rna_base_pair_constraints ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_base_pair_constraints/command.sh Running Test swm_general_polymer_sampler ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_general_polymer_sampler/command.sh Finished trRosettaProtocolMover_rosettascripts_diskwrite_only in 10 seconds [~ 29 test (3.6159600997506236%) started, 773 in queue, 12 running] Running Test swm_dna_loop ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_dna_loop/command.sh Finished trRosettaProtocolMover_rosettascripts_diskwrite in 11 seconds [~ 30 test (3.7406483790523692%) started, 772 in queue, 12 running] Running Test swm_dna_bridge ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_dna_bridge/command.sh Finished trRosettaProtocolMover_rosettascripts in 13 seconds [~ 31 test (3.865336658354115%) started, 771 in queue, 12 running] No correct command.sh file found for smart_annealer. Skipping. Running Test swm_add_rosettascripts ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_add_rosettascripts/command.sh Finished target_clash in 32 seconds [~ 33 test (4.114713216957606%) started, 769 in queue, 12 running] Running Test small_molecule_lattice_dock ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/small_molecule_lattice_dock/command.sh Finished tna_base_pairs in 35 seconds [~ 34 test (4.239401496259352%) started, 768 in queue, 12 running] Running Test simple_metrics_per_residue ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metrics_per_residue/command.sh Finished swm_add_rosettascripts in 43 seconds [~ 35 test (4.364089775561097%) started, 767 in queue, 12 running] Running Test simple_metrics_in_protocols ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metrics_in_protocols/command.sh Finished swm_rna_checkpoint_partition in 75 seconds [~ 36 test (4.488778054862843%) started, 766 in queue, 12 running] Running Test simple_metrics_b_factor ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metrics_b_factor/command.sh Finished small_molecule_lattice_dock in 82 seconds [~ 37 test (4.613466334164588%) started, 765 in queue, 12 running] Running Test simple_metrics ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metrics/command.sh Finished swm_general_polymer_sampler in 133 seconds [~ 38 test (4.738154613466334%) started, 764 in queue, 12 running] Running Test simple_metric_filter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metric_filter/command.sh Finished tcrmodel in 151 seconds [~ 39 test (4.86284289276808%) started, 763 in queue, 12 running] Running Test simple_metric_features ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metric_features/command.sh Finished simple_metric_filter in 56 seconds [~ 40 test (4.987531172069826%) started, 762 in queue, 12 running] Running Test simple_metric_cache ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metric_cache/command.sh /home/benchmark/rosetta/tests/integration/new/simple_metric_features/command.sh: line 12: dump.sql: No such file or directory Finished simple_metric_features in 58 seconds [~ 41 test (5.112219451371571%) started, 761 in queue, 12 running] Running Test simple_grafting_movers ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_grafting_movers/command.sh Finished simple_metrics_in_protocols in 165 seconds [~ 42 test (5.236907730673317%) started, 760 in queue, 12 running] Running Test simple_glycosylation_alternate_AAs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_glycosylation_alternate_AAs/command.sh Finished simple_metrics_b_factor in 158 seconds [~ 43 test (5.361596009975062%) started, 759 in queue, 12 running] Running Test simple_cycpep_predict_trigonal_pyramidal_metal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_trigonal_pyramidal_metal/command.sh Finished simple_grafting_movers in 38 seconds [~ 44 test (5.486284289276808%) started, 758 in queue, 12 running] Running Test simple_cycpep_predict_trigonal_planar_metal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_trigonal_planar_metal/command.sh Finished test_degreaser in 248 seconds [~ 45 test (5.610972568578553%) started, 757 in queue, 12 running] Running Test simple_cycpep_predict_tma ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_tma/command.sh Finished simple_metric_cache in 50 seconds [~ 46 test (5.7356608478802995%) started, 756 in queue, 12 running] Running Test simple_cycpep_predict_thioether_lariat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_thioether_lariat/command.sh Finished simple_glycosylation_alternate_AAs in 55 seconds [~ 47 test (5.860349127182045%) started, 755 in queue, 12 running] Running Test simple_cycpep_predict_thioether_cis_sampling ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_thioether_cis_sampling/command.sh Finished simple_metrics_per_residue in 261 seconds [~ 48 test (5.985037406483791%) started, 754 in queue, 12 running] Running Test simple_cycpep_predict_tetrahedral_metal_asp ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_tetrahedral_metal_asp/command.sh Finished simple_cycpep_predict_thioether_lariat in 54 seconds [~ 49 test (6.109725685785536%) started, 753 in queue, 12 running] Running Test simple_cycpep_predict_tetrahedral_metal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_tetrahedral_metal/command.sh Finished simple_metrics in 194 seconds [~ 50 test (6.234413965087282%) started, 752 in queue, 12 running] Running Test simple_cycpep_predict_terminal_disulfide_tails_2 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_tails_2/command.sh Finished swm_dna_loop in 322 seconds [~ 51 test (6.359102244389027%) started, 751 in queue, 12 running] Running Test simple_cycpep_predict_terminal_disulfide_tails ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_tails/command.sh Finished simple_cycpep_predict_tetrahedral_metal_asp in 45 seconds [~ 52 test (6.483790523690773%) started, 750 in queue, 12 running] Running Test simple_cycpep_predict_terminal_disulfide_internal_permutations ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_internal_permutations/command.sh Finished simple_cycpep_predict_terminal_disulfide_tails in 27 seconds [~ 53 test (6.6084788029925186%) started, 749 in queue, 12 running] Running Test simple_cycpep_predict_terminal_disulfide ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide/command.sh Finished voids_penalty_energy_design_symmetry in 378 seconds [~ 54 test (6.733167082294265%) started, 748 in queue, 12 running] Running Test simple_cycpep_predict_square_pyramidal_metal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_square_pyramidal_metal/command.sh Finished simple_cycpep_predict_terminal_disulfide in 20 seconds [~ 55 test (6.85785536159601%) started, 747 in queue, 12 running] Running Test simple_cycpep_predict_square_planar_metal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_square_planar_metal/command.sh Finished simple_cycpep_predict_terminal_disulfide_internal_permutations in 42 seconds [~ 56 test (6.982543640897756%) started, 746 in queue, 12 running] Running Test simple_cycpep_predict_sidechain_isopeptide_reverse ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_sidechain_isopeptide_reverse/command.sh Finished simple_cycpep_predict_tma in 140 seconds [~ 57 test (7.107231920199501%) started, 745 in queue, 12 running] Running Test simple_cycpep_predict_sidechain_isopeptide ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_sidechain_isopeptide/command.sh Finished simple_cycpep_predict_thioether_cis_sampling in 115 seconds [~ 58 test (7.231920199501247%) started, 744 in queue, 12 running] Running Test simple_cycpep_predict_peptoid ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_peptoid/command.sh Finished simple_cycpep_predict_terminal_disulfide_tails_2 in 88 seconds [~ 59 test (7.356608478802992%) started, 743 in queue, 12 running] Running Test simple_cycpep_predict_octahedral_metal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_octahedral_metal/command.sh Finished simple_cycpep_predict_square_planar_metal in 33 seconds [~ 60 test (7.4812967581047385%) started, 742 in queue, 12 running] Running Test simple_cycpep_predict_nterm_isopeptide_lariat_tailless ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_nterm_isopeptide_lariat_tailless/command.sh Finished simple_cycpep_predict_sidechain_isopeptide_reverse in 39 seconds [~ 61 test (7.605985037406484%) started, 741 in queue, 12 running] Running Test simple_cycpep_predict_nterm_isopeptide_lariat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_nterm_isopeptide_lariat/command.sh Finished simple_cycpep_predict_sidechain_isopeptide in 39 seconds [~ 62 test (7.73067331670823%) started, 740 in queue, 12 running] Running Test simple_cycpep_predict_lanthionine ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_lanthionine/command.sh Finished swm_rna_base_pair_constraints in 420 seconds [~ 63 test (7.855361596009975%) started, 739 in queue, 12 running] Running Test simple_cycpep_predict_cterm_isopeptide_lariat_tailless ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_cterm_isopeptide_lariat_tailless/command.sh Finished simple_cycpep_predict_nterm_isopeptide_lariat_tailless in 35 seconds [~ 64 test (7.980049875311721%) started, 738 in queue, 12 running] Running Test simple_cycpep_predict_cterm_isopeptide_lariat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_cterm_isopeptide_lariat/command.sh Finished simple_cycpep_predict_lanthionine in 22 seconds [~ 65 test (8.104738154613466%) started, 737 in queue, 12 running] Running Test simple_cycpep_predict_bondangle_bondlength ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_bondangle_bondlength/command.sh Finished simple_cycpep_predict_nterm_isopeptide_lariat in 33 seconds [~ 66 test (8.229426433915211%) started, 736 in queue, 12 running] Running Test simple_cycpep_predict_beta_thioether_lariat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_beta_thioether_lariat/command.sh Finished simple_cycpep_predict_peptoid in 72 seconds [~ 67 test (8.354114713216958%) started, 735 in queue, 12 running] Running Test simple_cycpep_predict_1_4_bbmb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_1_4_bbmb/command.sh Finished simple_cycpep_predict_cterm_isopeptide_lariat_tailless in 34 seconds [~ 68 test (8.478802992518704%) started, 734 in queue, 12 running] Running Test selected_residue_count_metric ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/selected_residue_count_metric/command.sh Finished simple_cycpep_predict_trigonal_planar_metal in 220 seconds [~ 69 test (8.603491271820449%) started, 733 in queue, 12 running] Finished simple_cycpep_predict_tetrahedral_metal in 163 seconds [~ 69 test (8.603491271820449%) started, 733 in queue, 11 running] Running Test sasa_metric_options ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sasa_metric_options/command.sh Running Test sample_seq_from_probs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sample_seq_from_probs/command.sh Finished simple_cycpep_predict_cterm_isopeptide_lariat in 31 seconds [~ 71 test (8.852867830423941%) started, 731 in queue, 12 running] Running Test rosetta_scripts_jd3 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosetta_scripts_jd3/command.sh Finished simple_cycpep_predict_trigonal_pyramidal_metal in 251 seconds [~ 72 test (8.977556109725686%) started, 730 in queue, 12 running] Running Test rnp_ddg_relax_setup ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_relax_setup/command.sh PYTHON IS /home/benchmark/prefix/besu/linux/python_virtual_environments/python-3.9/df3055f6f81b525b8050290cef45e968/bin/python Finished rnp_ddg_relax_setup in 0 seconds [~ 73 test (9.102244389027431%) started, 729 in queue, 12 running] Running Test rnp_ddg_relax_finalize ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_relax_finalize/command.sh PYTHON IS /home/benchmark/prefix/besu/linux/python_virtual_environments/python-3.9/df3055f6f81b525b8050290cef45e968/bin/python Finished rnp_ddg_relax_finalize in 0 seconds [~ 74 test (9.226932668329177%) started, 728 in queue, 12 running] Running Test rnp_ddg_relax_command_2 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_relax_command_2/command.sh Finished selected_residue_count_metric in 36 seconds [~ 75 test (9.351620947630924%) started, 727 in queue, 12 running] Running Test rnp_ddg_relax_command_1 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_relax_command_1/command.sh Finished voids_penalty_energy_design in 505 seconds [~ 76 test (9.476309226932669%) started, 726 in queue, 12 running] Running Test rnp_ddg_finalize ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_finalize/command.sh PYTHON IS /home/benchmark/prefix/besu/linux/python_virtual_environments/python-3.9/df3055f6f81b525b8050290cef45e968/bin/python Finished rnp_ddg_finalize in 0 seconds [~ 77 test (9.600997506234414%) started, 725 in queue, 12 running] Running Test rnp_ddg_calc_wt ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_calc_wt/command.sh Finished sample_seq_from_probs in 37 seconds [~ 78 test (9.72568578553616%) started, 724 in queue, 12 running] Running Test rnp_ddg_calc_setup ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_calc_setup/command.sh PYTHON is /home/benchmark/prefix/besu/linux/python_virtual_environments/python-3.9/df3055f6f81b525b8050290cef45e968/bin/python Finished rnp_ddg_calc_setup in 0 seconds [~ 79 test (9.850374064837906%) started, 723 in queue, 12 running] Running Test rnp_ddg_calc_mut ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_calc_mut/command.sh Finished swm_dna_bridge in 510 seconds [~ 80 test (9.975062344139651%) started, 722 in queue, 12 running] Running Test rna_predict_chem_map ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_predict_chem_map/command.sh Finished sasa_metric_options in 55 seconds [~ 81 test (10.099750623441397%) started, 721 in queue, 12 running] Running Test rna_denovo_symm_hack ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_symm_hack/command.sh Finished simple_cycpep_predict_octahedral_metal in 137 seconds [~ 82 test (10.224438902743142%) started, 720 in queue, 12 running] Running Test rna_denovo_new_libs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_new_libs/command.sh Finished rna_predict_chem_map in 18 seconds [~ 83 test (10.349127182044887%) started, 719 in queue, 12 running] Running Test rna_denovo_new_FT_rna_two_chains ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_new_FT_rna_two_chains/command.sh Finished simple_cycpep_predict_1_4_bbmb in 81 seconds [~ 84 test (10.473815461346634%) started, 718 in queue, 12 running] Running Test rna_denovo_new_FT_RNP_2prot_dens ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_new_FT_RNP_2prot_dens/command.sh Finished simple_cycpep_predict_bondangle_bondlength in 97 seconds [~ 85 test (10.598503740648379%) started, 717 in queue, 12 running] Running Test rna_denovo_new_FT_5P_j12_leadzyme ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_new_FT_5P_j12_leadzyme/command.sh Finished rna_denovo_new_FT_rna_two_chains in 13 seconds [~ 86 test (10.723192019950124%) started, 716 in queue, 12 running] Running Test rna_denovo_new_FT_2in_dens ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_new_FT_2in_dens/command.sh Finished simple_cycpep_predict_beta_thioether_lariat in 109 seconds [~ 87 test (10.84788029925187%) started, 715 in queue, 12 running] Running Test rna_denovo_lariat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_lariat/command.sh Finished rna_denovo_new_FT_5P_j12_leadzyme in 37 seconds [~ 88 test (10.972568578553616%) started, 714 in queue, 12 running] Running Test rna_denovo_fragment_homology_exclusion ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_fragment_homology_exclusion/command.sh Finished rna_denovo_new_FT_RNP_2prot_dens in 66 seconds [~ 89 test (11.097256857855362%) started, 713 in queue, 12 running] Running Test rna_denovo_dna_bridge ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_dna_bridge/command.sh Finished rnp_ddg_relax_command_1 in 147 seconds [~ 90 test (11.221945137157107%) started, 712 in queue, 12 running] Running Test restype_converter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/restype_converter/command.sh Finished rna_denovo_symm_hack in 132 seconds [~ 91 test (11.346633416458852%) started, 711 in queue, 12 running] No correct command.sh file found for replica_docking. Skipping. Running Test res_lipo_ref2015_memb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/res_lipo_ref2015_memb/command.sh Finished restype_converter in 9 seconds [~ 93 test (11.596009975062344%) started, 709 in queue, 12 running] Running Test repeat_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/repeat_relax/command.sh Finished rna_denovo_new_FT_2in_dens in 135 seconds [~ 94 test (11.72069825436409%) started, 708 in queue, 12 running] Running Test repeat_propagate_v3 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/repeat_propagate_v3/command.sh Finished res_lipo_ref2015_memb in 35 seconds [~ 95 test (11.845386533665835%) started, 707 in queue, 12 running] Running Test repeat_propagate_v2 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/repeat_propagate_v2/command.sh Finished rosetta_scripts_jd3 in 212 seconds [~ 96 test (11.970074812967582%) started, 706 in queue, 12 running] Running Test repeat_propagate ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/repeat_propagate/command.sh Finished rna_denovo_fragment_homology_exclusion in 135 seconds [~ 97 test (12.094763092269327%) started, 705 in queue, 12 running] No correct command.sh file found for recon_design_mpi. Skipping. Running Test remove_duplicate_motifs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/remove_duplicate_motifs/command.sh Encounter error while executing: ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/remove_duplicate_motifs/command.sh *** Test remove_duplicate_motifs did not run! Check your --mode flag and paths. [2024-09-18 21:15:43.026721] Finished remove_duplicate_motifs in 5 seconds [~ 99 test (12.344139650872817%) started, 703 in queue, 12 running] Running Test recon_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/recon_design/command.sh Finished repeat_propagate_v3 in 39 seconds [~ 100 test (12.468827930174564%) started, 702 in queue, 12 running] Running Test read_polymeric_components ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/read_polymeric_components/command.sh Finished repeat_propagate_v2 in 36 seconds [~ 101 test (12.59351620947631%) started, 701 in queue, 12 running] Running Test rdkit_metrics ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rdkit_metrics/command.sh Finished repeat_propagate in 40 seconds [~ 102 test (12.718204488778055%) started, 700 in queue, 12 running] Running Test pymol_cif ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pymol_cif/command.sh Finished read_polymeric_components in 10 seconds [~ 103 test (12.8428927680798%) started, 699 in queue, 12 running] No correct command.sh file found for proteinMPNN_model_perplexity. Skipping. Running Test protocol_metric ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/protocol_metric/command.sh Finished pymol_cif in 16 seconds [~ 105 test (13.092269326683292%) started, 697 in queue, 12 running] Running Test pose_sewing ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pose_sewing/command.sh Finished rdkit_metrics in 38 seconds [~ 106 test (13.216957605985037%) started, 696 in queue, 12 running] Running Test polyaramid_test_trivial ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/polyaramid_test_trivial/command.sh Finished recon_design in 50 seconds [~ 107 test (13.341645885286782%) started, 695 in queue, 12 running] Running Test pna_base_pairs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pna_base_pairs/command.sh Finished protocol_metric in 40 seconds [~ 108 test (13.46633416458853%) started, 694 in queue, 12 running] Running Test phosphorylation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/phosphorylation/command.sh Finished rna_denovo_new_libs in 259 seconds [~ 109 test (13.591022443890274%) started, 693 in queue, 12 running] Running Test perturb_helical_bundle_setting ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/perturb_helical_bundle_setting/command.sh Finished phosphorylation in 21 seconds [~ 110 test (13.71571072319202%) started, 692 in queue, 12 running] Running Test per_residue_solvent_exposure ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/per_residue_solvent_exposure/command.sh Finished per_residue_solvent_exposure in 0 seconds [~ 111 test (13.840399002493765%) started, 691 in queue, 12 running] Running Test output_schema ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/output_schema/command.sh Finished repeat_relax in 153 seconds [~ 112 test (13.965087281795512%) started, 690 in queue, 12 running] Running Test oligourea_predict ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/oligourea_predict/command.sh Finished pna_base_pairs in 37 seconds [~ 113 test (14.089775561097257%) started, 689 in queue, 12 running] Running Test oligourea_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/oligourea_design/command.sh Finished pose_sewing in 63 seconds [~ 114 test (14.214463840399002%) started, 688 in queue, 12 running] Running Test netcharge_design_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/netcharge_design_symm/command.sh Finished output_schema in 19 seconds [~ 115 test (14.339152119700747%) started, 687 in queue, 12 running] Running Test netcharge_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/netcharge_design/command.sh Finished perturb_helical_bundle_setting in 48 seconds [~ 116 test (14.463840399002494%) started, 686 in queue, 12 running] Running Test ncbb_packer_palette ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ncbb_packer_palette/command.sh Finished oligourea_design in 46 seconds [~ 117 test (14.58852867830424%) started, 685 in queue, 12 running] No correct command.sh file found for multithreaded_packrotamersmover. Skipping. No correct command.sh file found for multithreaded_interaction_graph_accuracy_symm. Skipping. No correct command.sh file found for multithreaded_interaction_graph_accuracy. Skipping. No correct command.sh file found for multithreaded_fixbb. Skipping. No correct command.sh file found for multithreaded_fastdesign. Skipping. Running Test mutate ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mutate/command.sh Finished oligourea_predict in 48 seconds [~ 123 test (15.336658354114713%) started, 679 in queue, 12 running] Running Test multistage_rosetta_scripts_clustering ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/multistage_rosetta_scripts_clustering/command.sh Finished mutate in 15 seconds [~ 124 test (15.46134663341646%) started, 678 in queue, 12 running] Running Test multistage_rosetta_scripts ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/multistage_rosetta_scripts/command.sh Finished netcharge_design_symm in 94 seconds [~ 125 test (15.586034912718205%) started, 677 in queue, 12 running] Running Test mpil_load_implicit_lipids ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpil_load_implicit_lipids/command.sh Finished multistage_rosetta_scripts_clustering in 46 seconds [~ 126 test (15.71072319201995%) started, 676 in queue, 12 running] Running Test mpil_find_pore_bbarrel ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpil_find_pore_bbarrel/command.sh Finished ncbb_packer_palette in 64 seconds [~ 127 test (15.835411471321695%) started, 675 in queue, 12 running] No correct command.sh file found for mpi_simple_cycpep_predict_computing_pnear_to_all. Skipping. No correct command.sh file found for mpi_simple_cycpep_predict_4level. Skipping. No correct command.sh file found for mpi_simple_cycpep_predict. Skipping. Running Test mpil_find_pore_ahelical ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpil_find_pore_ahelical/command.sh Finished mpil_load_implicit_lipids in 6 seconds [~ 131 test (16.33416458852868%) started, 671 in queue, 12 running] Running Test mp_span_ang_ref2015_memb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_span_ang_ref2015_memb/command.sh Finished mpil_find_pore_ahelical in 6 seconds [~ 132 test (16.458852867830423%) started, 670 in queue, 12 running] Running Test mp_quick_relax_ref2015_memb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_quick_relax_ref2015_memb/command.sh Finished mpil_find_pore_bbarrel in 9 seconds [~ 133 test (16.58354114713217%) started, 669 in queue, 12 running] Running Test mp_ligand_interface ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_ligand_interface/command.sh Finished multistage_rosetta_scripts in 60 seconds [~ 134 test (16.708229426433917%) started, 668 in queue, 12 running] Running Test mp_domain_assembly_FtsQ ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_domain_assembly_FtsQ/command.sh Finished mp_span_ang_ref2015_memb in 37 seconds [~ 135 test (16.83291770573566%) started, 667 in queue, 12 running] Running Test mp_domain_assembly ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_domain_assembly/command.sh Finished mp_quick_relax_ref2015_memb in 37 seconds [~ 136 test (16.957605985037407%) started, 666 in queue, 12 running] Running Test mp_dock_ensemble ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_dock_ensemble/command.sh Finished mp_ligand_interface in 42 seconds [~ 137 test (17.08229426433915%) started, 665 in queue, 12 running] Running Test molfile_to_params_polymer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/molfile_to_params_polymer/command.sh Finished rnp_ddg_calc_wt in 483 seconds [~ 138 test (17.206982543640898%) started, 664 in queue, 12 running] Running Test mmtfIO_score_test ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mmtfIO_score_test/command.sh Finished polyaramid_test_trivial in 233 seconds [~ 139 test (17.331670822942645%) started, 663 in queue, 12 running] Running Test mixed_monte_carlo ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mixed_monte_carlo/command.sh Finished rna_denovo_lariat in 437 seconds [~ 140 test (17.456359102244388%) started, 662 in queue, 12 running] Running Test mhc_epitope_nmer_preload ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mhc_epitope_nmer_preload/command.sh Finished rna_denovo_dna_bridge in 397 seconds [~ 141 test (17.581047381546135%) started, 661 in queue, 12 running] Running Test mhc_epitope ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mhc_epitope/command.sh Finished netcharge_design in 190 seconds [~ 142 test (17.705735660847882%) started, 660 in queue, 12 running] Running Test make_mainchain_potential_symm_preproline ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_mainchain_potential_symm_preproline/command.sh Finished mmtfIO_score_test in 31 seconds [~ 143 test (17.830423940149625%) started, 659 in queue, 12 running] Running Test make_mainchain_potential_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_mainchain_potential_symm/command.sh Finished make_mainchain_potential_symm_preproline in 11 seconds [~ 144 test (17.955112219451372%) started, 658 in queue, 12 running] Running Test make_mainchain_potential ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_mainchain_potential/command.sh Finished make_mainchain_potential_symm in 11 seconds [~ 145 test (18.079800498753116%) started, 657 in queue, 12 running] Running Test loop_grower_N_term_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/loop_grower_N_term_symm/command.sh Finished mp_dock_ensemble in 88 seconds [~ 146 test (18.204488778054863%) started, 656 in queue, 12 running] Running Test ligand_motif_identification ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_motif_identification/command.sh Finished mhc_epitope_nmer_preload in 56 seconds [~ 147 test (18.32917705735661%) started, 655 in queue, 12 running] Running Test ligand_motif_discovery ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_motif_discovery/command.sh Finished ligand_motif_identification in 18 seconds [~ 148 test (18.453865336658353%) started, 654 in queue, 12 running] Running Test ligand_dock_cholesterol ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_dock_cholesterol/command.sh Encounter error while executing: ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_motif_discovery/command.sh *** Test ligand_motif_discovery did not run! Check your --mode flag and paths. [2024-09-18 21:21:25.335157] Finished ligand_motif_discovery in 6 seconds [~ 149 test (18.5785536159601%) started, 653 in queue, 12 running] Running Test job_definition_script_vars ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/job_definition_script_vars/command.sh Finished mp_domain_assembly in 128 seconds [~ 150 test (18.703241895261847%) started, 652 in queue, 12 running] Running Test iphold ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/iphold/command.sh Finished molfile_to_params_polymer in 123 seconds [~ 151 test (18.82793017456359%) started, 651 in queue, 12 running] Running Test interface_energy ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/interface_energy/command.sh Finished loop_grower_N_term_symm in 54 seconds [~ 152 test (18.952618453865338%) started, 650 in queue, 12 running] Running Test interaction_graph_summary_metric ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/interaction_graph_summary_metric/command.sh Finished mhc_epitope in 82 seconds [~ 153 test (19.07730673316708%) started, 649 in queue, 12 running] Running Test hydrate_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hydrate_relax/command.sh Finished interface_energy in 16 seconds [~ 154 test (19.201995012468828%) started, 648 in queue, 12 running] Running Test hydrate ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hydrate/command.sh Finished make_mainchain_potential in 87 seconds [~ 155 test (19.326683291770575%) started, 647 in queue, 12 running] Running Test homodimer_fnd_ref2015_memb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/homodimer_fnd_ref2015_memb/command.sh Finished mixed_monte_carlo in 112 seconds [~ 156 test (19.45137157107232%) started, 646 in queue, 12 running] Running Test helical_bundle_predict_skipping_residues ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_skipping_residues/command.sh Finished ligand_dock_cholesterol in 76 seconds [~ 157 test (19.576059850374065%) started, 645 in queue, 12 running] Running Test helical_bundle_predict_sequence ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_sequence/command.sh Finished interaction_graph_summary_metric in 64 seconds [~ 158 test (19.700748129675812%) started, 644 in queue, 12 running] Running Test helical_bundle_predict_psipred_with_helix_globals ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_psipred_with_helix_globals/command.sh Finished mp_domain_assembly_FtsQ in 223 seconds [~ 159 test (19.825436408977556%) started, 643 in queue, 12 running] Running Test helical_bundle_predict_psipred ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_psipred/command.sh Finished rnp_ddg_calc_mut in 670 seconds [~ 160 test (19.950124688279303%) started, 642 in queue, 12 running] Running Test helical_bundle_predict ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict/command.sh Finished hydrate in 79 seconds [~ 161 test (20.074812967581046%) started, 641 in queue, 12 running] Running Test hbnet_energy_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbnet_energy_symm/command.sh Finished iphold in 99 seconds [~ 162 test (20.199501246882793%) started, 640 in queue, 12 running] Running Test hbnet_energy_rosettascripts_linear ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbnet_energy_rosettascripts_linear/command.sh Finished homodimer_fnd_ref2015_memb in 87 seconds [~ 163 test (20.32418952618454%) started, 639 in queue, 12 running] Running Test hbnet_energy ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbnet_energy/command.sh Finished rnp_ddg_relax_command_2 in 753 seconds [~ 164 test (20.448877805486283%) started, 638 in queue, 12 running] Running Test glycopeptidedocking_diglyco_long ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycopeptidedocking_diglyco_long/command.sh Finished hbnet_energy_symm in 115 seconds [~ 165 test (20.57356608478803%) started, 637 in queue, 12 running] Running Test glycopeptidedocking ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycopeptidedocking/command.sh Finished job_definition_script_vars in 233 seconds [~ 166 test (20.698254364089774%) started, 636 in queue, 12 running] Running Test glycomutagenesis ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycomutagenesis/command.sh Finished hydrate_relax in 232 seconds [~ 167 test (20.82294264339152%) started, 635 in queue, 12 running] Running Test glycan_sequon_scanner ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycan_sequon_scanner/command.sh Finished glycan_sequon_scanner in 41 seconds [~ 168 test (20.947630922693268%) started, 634 in queue, 12 running] Running Test glycan_refinment ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycan_refinment/command.sh Finished helical_bundle_predict_skipping_residues in 277 seconds [~ 169 test (21.07231920199501%) started, 633 in queue, 12 running] Running Test glycan_anomers ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycan_anomers/command.sh Finished helical_bundle_predict_sequence in 255 seconds [~ 170 test (21.197007481296758%) started, 632 in queue, 12 running] Running Test genkic_sugars ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_sugars/command.sh Finished glycan_refinment in 43 seconds [~ 171 test (21.321695760598505%) started, 631 in queue, 12 running] Running Test ga_ligand_dock_macrocycle ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ga_ligand_dock_macrocycle/command.sh Finished helical_bundle_predict in 242 seconds [~ 172 test (21.44638403990025%) started, 630 in queue, 12 running] Running Test ga_ligand_dock_amino_acid ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ga_ligand_dock_amino_acid/command.sh Finished helical_bundle_predict_psipred_with_helix_globals in 282 seconds [~ 173 test (21.571072319201996%) started, 629 in queue, 12 running] Running Test ga_ligand_dock ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ga_ligand_dock/command.sh Finished glycan_anomers in 52 seconds [~ 174 test (21.69576059850374%) started, 628 in queue, 12 running] No correct command.sh file found for features_pdb_mpi. Skipping. Running Test fold_from_loops ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fold_from_loops/command.sh Finished hbnet_energy_rosettascripts_linear in 284 seconds [~ 176 test (21.945137157107233%) started, 626 in queue, 12 running] Running Test favor_coupling_tensor ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/favor_coupling_tensor/command.sh Finished helical_bundle_predict_psipred in 311 seconds [~ 177 test (22.069825436408976%) started, 625 in queue, 12 running] Running Test fast_relax_scripts ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fast_relax_scripts/command.sh Finished simple_cycpep_predict_square_pyramidal_metal in 1093 seconds [~ 178 test (22.194513715710723%) started, 624 in queue, 12 running] Running Test farnesyl ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/farnesyl/command.sh Finished hbnet_energy in 312 seconds [~ 179 test (22.31920199501247%) started, 623 in queue, 12 running] Running Test farfar_mrna ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/farfar_mrna/command.sh Finished glycomutagenesis in 224 seconds [~ 180 test (22.443890274314214%) started, 622 in queue, 12 running] Running Test explicit_membrane ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/explicit_membrane/command.sh Finished fold_from_loops in 88 seconds [~ 181 test (22.56857855361596%) started, 621 in queue, 12 running] Running Test exclusively_shared_jumps ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/exclusively_shared_jumps/command.sh Finished ga_ligand_dock_amino_acid in 116 seconds [~ 182 test (22.693266832917704%) started, 620 in queue, 12 running] No correct command.sh file found for esm_model_perplexity. Skipping. Running Test evolution ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/evolution/command.sh Finished genkic_sugars in 147 seconds [~ 184 test (22.942643391521198%) started, 618 in queue, 12 running] Running Test enzscore_filter_metal_sym ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enzscore_filter_metal_sym/command.sh Finished favor_coupling_tensor in 82 seconds [~ 185 test (23.06733167082294%) started, 617 in queue, 12 running] Running Test enzscore_filter_metal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enzscore_filter_metal/command.sh Finished exclusively_shared_jumps in 40 seconds [~ 186 test (23.19201995012469%) started, 616 in queue, 12 running] Running Test enzscore_filter_ligand ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enzscore_filter_ligand/command.sh Finished enzscore_filter_metal_sym in 46 seconds [~ 187 test (23.316708229426435%) started, 615 in queue, 12 running] Running Test enzscore_filter_dimetal_sym ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enzscore_filter_dimetal_sym/command.sh Finished enzscore_filter_metal in 46 seconds [~ 188 test (23.44139650872818%) started, 614 in queue, 12 running] Running Test enzscore_filter_dimetal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enzscore_filter_dimetal/command.sh Finished farfar_mrna in 90 seconds [~ 189 test (23.566084788029926%) started, 613 in queue, 12 running] Running Test enumerative_sampling ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enumerative_sampling/command.sh Finished enzscore_filter_ligand in 35 seconds [~ 190 test (23.69077306733167%) started, 612 in queue, 12 running] Running Test energy_based_clustering_alpha_aa_scorefile ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/energy_based_clustering_alpha_aa_scorefile/command.sh Finished energy_based_clustering_alpha_aa_scorefile in 26 seconds [~ 191 test (23.815461346633416%) started, 611 in queue, 12 running] Running Test energy_based_clustering_alpha_aa_dihedral ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/energy_based_clustering_alpha_aa_dihedral/command.sh Finished enzscore_filter_dimetal_sym in 48 seconds [~ 192 test (23.940149625935163%) started, 610 in queue, 12 running] Running Test energy_based_clustering_alpha_aa_bin_analysis ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/energy_based_clustering_alpha_aa_bin_analysis/command.sh Finished enzscore_filter_dimetal in 45 seconds [~ 193 test (24.064837905236907%) started, 609 in queue, 12 running] Running Test energy_based_clustering_alpha_aa ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/energy_based_clustering_alpha_aa/command.sh Finished energy_based_clustering_alpha_aa_dihedral in 17 seconds [~ 194 test (24.189526184538654%) started, 608 in queue, 12 running] Running Test duplicate_header_guards ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/duplicate_header_guards/command.sh Finished energy_based_clustering_alpha_aa_bin_analysis in 17 seconds [~ 195 test (24.3142144638404%) started, 607 in queue, 12 running] Running Test drrafter_setup_simple ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup_simple/command.sh Finished drrafter_setup_simple in 1 seconds [~ 196 test (24.438902743142144%) started, 606 in queue, 12 running] Running Test drrafter_setup_ribosome_test ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup_ribosome_test/command.sh Finished duplicate_header_guards in 3 seconds [~ 197 test (24.56359102244389%) started, 605 in queue, 12 running] Running Test drrafter_setup_real_test_H_no_init ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup_real_test_H_no_init/command.sh Finished energy_based_clustering_alpha_aa in 16 seconds [~ 198 test (24.688279301745634%) started, 604 in queue, 12 running] Running Test drrafter_setup_real_test_H ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup_real_test_H/command.sh Finished enumerative_sampling in 57 seconds [~ 199 test (24.81296758104738%) started, 603 in queue, 12 running] Running Test drrafter_setup_protein_dock ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup_protein_dock/command.sh Finished drrafter_setup_protein_dock in 1 seconds [~ 200 test (24.93765586034913%) started, 602 in queue, 12 running] Running Test drrafter_setup_build_missing ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup_build_missing/command.sh Finished drrafter_setup_build_missing in 0 seconds [~ 201 test (25.06234413965087%) started, 601 in queue, 12 running] Running Test drrafter_setup ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup/command.sh Finished drrafter_setup_ribosome_test in 8 seconds [~ 202 test (25.18703241895262%) started, 600 in queue, 12 running] Running Test drrafter_run ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_run/command.sh Finished drrafter_setup in 0 seconds [~ 203 test (25.311720698254366%) started, 599 in queue, 12 running] Running Test drrafter_error_estimation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_error_estimation/command.sh Finished drrafter_setup_real_test_H_no_init in 7 seconds [~ 204 test (25.43640897755611%) started, 598 in queue, 12 running] Running Test dihedral_constraint_generator ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dihedral_constraint_generator/command.sh Finished drrafter_setup_real_test_H in 7 seconds [~ 205 test (25.561097256857856%) started, 597 in queue, 12 running] Running Test dgdp_script ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dgdp_script/command.sh Finished drrafter_error_estimation in 6 seconds [~ 206 test (25.6857855361596%) started, 596 in queue, 12 running] Running Test dgdp_aio ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dgdp_aio/command.sh Finished glycopeptidedocking in 381 seconds [~ 207 test (25.810473815461346%) started, 595 in queue, 12 running] Running Test design_w_custom_palette-RNA ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/design_w_custom_palette-RNA/command.sh Finished evolution in 144 seconds [~ 208 test (25.935162094763093%) started, 594 in queue, 12 running] Running Test design_w_custom_palette-NCAAs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/design_w_custom_palette-NCAAs/command.sh Finished farnesyl in 216 seconds [~ 209 test (26.059850374064837%) started, 593 in queue, 12 running] Running Test design_w_custom_palette-CAAs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/design_w_custom_palette-CAAs/command.sh Finished dihedral_constraint_generator in 37 seconds [~ 210 test (26.184538653366584%) started, 592 in queue, 12 running] Running Test design_glycans ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/design_glycans/command.sh Finished explicit_membrane in 178 seconds [~ 211 test (26.30922693266833%) started, 591 in queue, 12 running] Running Test dehydro_aa_patch ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dehydro_aa_patch/command.sh Finished design_w_custom_palette-RNA in 38 seconds [~ 212 test (26.433915211970074%) started, 590 in queue, 12 running] Running Test ddG_sym ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ddG_sym/command.sh Finished ga_ligand_dock_macrocycle in 315 seconds [~ 213 test (26.55860349127182%) started, 589 in queue, 12 running] Running Test database_md5 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/database_md5/command.sh Finished dehydro_aa_patch in 38 seconds [~ 214 test (26.683291770573565%) started, 588 in queue, 12 running] Running Test cycpep_rigid_body_permutation_mover ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cycpep_rigid_body_permutation_mover/command.sh Finished design_w_custom_palette-NCAAs in 70 seconds [~ 215 test (26.80798004987531%) started, 587 in queue, 12 running] Running Test cycpep_rdkit_metric ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cycpep_rdkit_metric/command.sh Finished design_w_custom_palette-CAAs in 69 seconds [~ 216 test (26.93266832917706%) started, 586 in queue, 12 running] Running Test cycpep_design_pipeline ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cycpep_design_pipeline/command.sh Finished database_md5 in 66 seconds [~ 217 test (27.057356608478802%) started, 585 in queue, 12 running] Running Test custom_basetype_packer_palette ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/custom_basetype_packer_palette/command.sh Finished custom_basetype_packer_palette in 44 seconds [~ 218 test (27.18204488778055%) started, 584 in queue, 12 running] Running Test crosslinkermover_trigonal_pyramidal_c3_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_trigonal_pyramidal_c3_symm/command.sh Finished ga_ligand_dock in 425 seconds [~ 219 test (27.306733167082296%) started, 583 in queue, 12 running] Running Test crosslinkermover_trigonal_pyramidal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_trigonal_pyramidal/command.sh Finished cycpep_rdkit_metric in 107 seconds [~ 220 test (27.43142144638404%) started, 582 in queue, 12 running] Running Test crosslinkermover_trigonal_planar_c3_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_trigonal_planar_c3_symm/command.sh Finished cycpep_design_pipeline in 113 seconds [~ 221 test (27.556109725685786%) started, 581 in queue, 12 running] Running Test crosslinkermover_trigonal_planar ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_trigonal_planar/command.sh Finished crosslinkermover_trigonal_pyramidal_c3_symm in 64 seconds [~ 222 test (27.68079800498753%) started, 580 in queue, 12 running] Running Test crosslinkermover_tma_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_tma_symm/command.sh Finished cycpep_rigid_body_permutation_mover in 163 seconds [~ 223 test (27.805486284289277%) started, 579 in queue, 12 running] Running Test crosslinkermover_tma ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_tma/command.sh Finished fast_relax_scripts in 439 seconds [~ 224 test (27.930174563591024%) started, 578 in queue, 12 running] Running Test crosslinkermover_thioether ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_thioether/command.sh Finished crosslinkermover_trigonal_planar_c3_symm in 64 seconds [~ 225 test (28.054862842892767%) started, 577 in queue, 12 running] Running Test crosslinkermover_tetrahedral_metal_d2_symmetry ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal_d2_symmetry/command.sh Finished crosslinkermover_trigonal_pyramidal in 80 seconds [~ 226 test (28.179551122194514%) started, 576 in queue, 12 running] Running Test crosslinkermover_tetrahedral_metal_c2_symmetry ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal_c2_symmetry/command.sh Finished drrafter_run in 279 seconds [~ 227 test (28.30423940149626%) started, 575 in queue, 12 running] Running Test crosslinkermover_tetrahedral_metal_asp ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal_asp/command.sh Finished crosslinkermover_trigonal_planar in 75 seconds [~ 228 test (28.428927680798004%) started, 574 in queue, 12 running] Running Test crosslinkermover_tetrahedral_metal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal/command.sh Finished crosslinkermover_thioether in 48 seconds [~ 229 test (28.55361596009975%) started, 573 in queue, 12 running] Running Test crosslinkermover_square_pyramidal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_square_pyramidal/command.sh Finished design_glycans in 273 seconds [~ 230 test (28.678304239401495%) started, 572 in queue, 12 running] Running Test crosslinkermover_square_planar_d2_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_square_planar_d2_symm/command.sh Finished glycopeptidedocking_diglyco_long in 725 seconds [~ 231 test (28.802992518703242%) started, 571 in queue, 12 running] Running Test crosslinkermover_square_planar ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_square_planar/command.sh Finished crosslinkermover_tetrahedral_metal_asp in 46 seconds [~ 232 test (28.92768079800499%) started, 570 in queue, 12 running] Running Test crosslinkermover_octahedral_s2_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_octahedral_s2_symm/command.sh Finished crosslinkermover_tetrahedral_metal in 43 seconds [~ 233 test (29.052369077306732%) started, 569 in queue, 12 running] Running Test crosslinkermover_octahedral ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_octahedral/command.sh Finished ddG_sym in 410 seconds [~ 234 test (29.17705735660848%) started, 568 in queue, 12 running] Running Test crosslinkermover_methyllanthionine ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_methyllanthionine/command.sh Finished crosslinkermover_tetrahedral_metal_c2_symmetry in 200 seconds [~ 235 test (29.301745635910226%) started, 567 in queue, 12 running] Running Test crosslinkermover_lanthionine ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_lanthionine/command.sh Finished crosslinkermover_tma_symm in 241 seconds [~ 236 test (29.42643391521197%) started, 566 in queue, 12 running] Running Test crosslinkermover_1_4_bbmb_s2_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_1_4_bbmb_s2_symm/command.sh Finished crosslinkermover_octahedral_s2_symm in 154 seconds [~ 237 test (29.551122194513717%) started, 565 in queue, 12 running] Running Test crosslinkermover_1_4_bbmb_c2_symmetry ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_1_4_bbmb_c2_symmetry/command.sh Finished crosslinkermover_square_planar_d2_symm in 173 seconds [~ 238 test (29.67581047381546%) started, 564 in queue, 12 running] Running Test crosslinkermover_1_4_bbmb_asymm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_1_4_bbmb_asymm/command.sh Finished crosslinkermover_methyllanthionine in 52 seconds [~ 239 test (29.800498753117207%) started, 563 in queue, 12 running] Running Test create_sequence_motif ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/create_sequence_motif/command.sh Finished crosslinkermover_lanthionine in 43 seconds [~ 240 test (29.925187032418954%) started, 562 in queue, 12 running] Running Test create_clash-based_repack_shell ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/create_clash-based_repack_shell/command.sh Finished crosslinkermover_tetrahedral_metal_d2_symmetry in 261 seconds [~ 241 test (30.049875311720697%) started, 561 in queue, 12 running] Running Test crankshaft_flip ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crankshaft_flip/command.sh Finished create_sequence_motif in 43 seconds [~ 242 test (30.174563591022444%) started, 560 in queue, 12 running] Running Test count_cycpep_sequences ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/count_cycpep_sequences/command.sh Finished create_clash-based_repack_shell in 41 seconds [~ 243 test (30.299251870324188%) started, 559 in queue, 12 running] Running Test control_flow_rs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/control_flow_rs/command.sh Finished crosslinkermover_1_4_bbmb_c2_symmetry in 98 seconds [~ 244 test (30.423940149625935%) started, 558 in queue, 12 running] Running Test constraints_metric ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/constraints_metric/command.sh Finished crosslinkermover_square_pyramidal in 283 seconds [~ 245 test (30.54862842892768%) started, 557 in queue, 12 running] Running Test coenzymes ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/coenzymes/command.sh Finished dgdp_aio in 579 seconds [~ 246 test (30.673316708229425%) started, 556 in queue, 12 running] Running Test code_template_tests_citations ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/code_template_tests_citations/command.sh ‘database/citations/rosetta_citations.txt’ -> ‘database/citations/rosetta_citations.original.txt’ First script ran successfully. Second script ran successfully. Output matches expectation. Finished code_template_tests_citations in 6 seconds [~ 247 test (30.798004987531172%) started, 555 in queue, 12 running] Running Test coarse_rna_scoring ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/coarse_rna_scoring/command.sh Finished coenzymes in 17 seconds [~ 248 test (30.92269326683292%) started, 554 in queue, 12 running] Running Test cmaes_minimizer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cmaes_minimizer/command.sh Finished crosslinkermover_square_planar in 291 seconds [~ 249 test (31.047381546134662%) started, 553 in queue, 12 running] Running Test cleanAlignment ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cleanAlignment/command.sh Finished cmaes_minimizer in 26 seconds [~ 250 test (31.17206982543641%) started, 552 in queue, 12 running] Running Test cl_complex_rescore ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cl_complex_rescore/command.sh Finished crankshaft_flip in 112 seconds [~ 251 test (31.296758104738153%) started, 551 in queue, 12 running] Running Test ccd_ends_graft_mover_rs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ccd_ends_graft_mover_rs/command.sh Finished coarse_rna_scoring in 48 seconds [~ 252 test (31.4214463840399%) started, 550 in queue, 12 running] Running Test case_sensitive_filenames ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/case_sensitive_filenames/command.sh Finished cl_complex_rescore in 17 seconds [~ 253 test (31.546134663341647%) started, 549 in queue, 12 running] Running Test cartesianddg ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cartesianddg/command.sh /usr/local/bin/git a7a3305c3e9c2a41c1af583fc76bba1793956864 Finished case_sensitive_filenames in 6 seconds [~ 254 test (31.67082294264339%) started, 548 in queue, 12 running] Running Test cart_min_glycans ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cart_min_glycans/command.sh Finished constraints_metric in 70 seconds [~ 255 test (31.795511221945137%) started, 547 in queue, 12 running] Running Test buried_unsat_voids_hbnet_design_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/buried_unsat_voids_hbnet_design_symm/command.sh Finished cartesianddg in 22 seconds [~ 256 test (31.920199501246884%) started, 546 in queue, 12 running] Running Test buried_unsat_voids_hbnet_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/buried_unsat_voids_hbnet_design/command.sh Finished cleanAlignment in 90 seconds [~ 257 test (32.04488778054863%) started, 545 in queue, 12 running] No correct command.sh file found for bcl_fragment_mutate. Skipping. No correct command.sh file found for basic_gcn_tensorflow_test. Skipping. Running Test burial_measure_centroid ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/burial_measure_centroid/command.sh Finished burial_measure_centroid in 0 seconds [~ 260 test (32.418952618453865%) started, 542 in queue, 12 running] Running Test balancedKIC ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/balancedKIC/command.sh Finished crosslinkermover_tma in 452 seconds [~ 261 test (32.54364089775561%) started, 541 in queue, 12 running] Running Test autosetup_metals_centroid ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/autosetup_metals_centroid/command.sh Finished count_cycpep_sequences in 145 seconds [~ 262 test (32.66832917705736%) started, 540 in queue, 12 running] Running Test auto-drrafter_setup_run_R3 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/auto-drrafter_setup_run_R3/command.sh Finished dgdp_script in 708 seconds [~ 263 test (32.7930174563591%) started, 539 in queue, 12 running] Running Test auto-drrafter_setup_run_R2 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/auto-drrafter_setup_run_R2/command.sh Finished cart_min_glycans in 71 seconds [~ 264 test (32.917705735660846%) started, 538 in queue, 12 running] Running Test auto-drrafter_setup_run_R1 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/auto-drrafter_setup_run_R1/command.sh Finished crosslinkermover_1_4_bbmb_s2_symm in 251 seconds [~ 265 test (33.042394014962596%) started, 537 in queue, 12 running] Running Test auto-drrafter_final_results ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/auto-drrafter_final_results/command.sh Finished autosetup_metals_centroid in 37 seconds [~ 266 test (33.16708229426434%) started, 536 in queue, 12 running] Running Test antibody_designer_xml ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_designer_xml/command.sh Finished crosslinkermover_1_4_bbmb_asymm in 250 seconds [~ 267 test (33.29177057356608%) started, 535 in queue, 12 running] No correct command.sh file found for antibody_cc. Skipping. Running Test antibody_designer_camelid ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_designer_camelid/command.sh Finished control_flow_rs in 183 seconds [~ 269 test (33.54114713216958%) started, 533 in queue, 12 running] No correct command.sh file found for abinitio_with_trRosetta. Skipping. Running Test ambiguous_nmr_distance_constraint ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ambiguous_nmr_distance_constraint/command.sh Finished balancedKIC in 73 seconds [~ 271 test (33.790523690773064%) started, 531 in queue, 12 running] Running Test SSElementSelector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/SSElementSelector/command.sh Finished auto-drrafter_final_results in 50 seconds [~ 272 test (33.915211970074814%) started, 530 in queue, 12 running] Running Test SID_rescore ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/SID_rescore/command.sh Finished ambiguous_nmr_distance_constraint in 34 seconds [~ 273 test (34.03990024937656%) started, 529 in queue, 12 running] Running Test SID_ERMS_prediction ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/SID_ERMS_prediction/command.sh Finished antibody_designer_camelid in 50 seconds [~ 274 test (34.1645885286783%) started, 528 in queue, 12 running] Running Test RunSimpleMetric_b_factor_test ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/RunSimpleMetric_b_factor_test/command.sh Finished buried_unsat_voids_hbnet_design in 127 seconds [~ 275 test (34.28927680798005%) started, 527 in queue, 12 running] Running Test ResidueDisorder ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ResidueDisorder/command.sh Finished SID_rescore in 18 seconds [~ 276 test (34.413965087281795%) started, 526 in queue, 12 running] No correct command.sh file found for PTMPrediction. Skipping. Running Test PolarDesign2019 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/PolarDesign2019/command.sh Finished ResidueDisorder in 9 seconds [~ 278 test (34.66334164588529%) started, 524 in queue, 12 running] Running Test N-terminal_acetylation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/N-terminal_acetylation/command.sh Finished SSElementSelector in 34 seconds [~ 279 test (34.78802992518703%) started, 523 in queue, 12 running] Running Test InterfaceAnalyzer_metrics ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_metrics/command.sh Finished N-terminal_acetylation in 5 seconds [~ 280 test (34.912718204488776%) started, 522 in queue, 12 running] Running Test InterfaceAnalyzer_ligand ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_ligand/command.sh Finished InterfaceAnalyzer_ligand in 21 seconds [~ 281 test (35.03740648379053%) started, 521 in queue, 12 running] Running Test HDXEnergy ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/HDXEnergy/command.sh Finished RunSimpleMetric_b_factor_test in 47 seconds [~ 282 test (35.16209476309227%) started, 520 in queue, 12 running] Running Test FavorSequenceProfileMover ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/FavorSequenceProfileMover/command.sh Finished crosslinkermover_octahedral in 528 seconds [~ 283 test (35.28678304239401%) started, 519 in queue, 12 running] Running Test DumpTrajectoryEnergy_packing ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DumpTrajectoryEnergy_packing/command.sh Finished InterfaceAnalyzer_metrics in 53 seconds [~ 284 test (35.411471321695764%) started, 518 in queue, 12 running] Running Test DumpTrajectoryEnergy ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DumpTrajectoryEnergy/command.sh Finished FavorSequenceProfileMover in 37 seconds [~ 285 test (35.53615960099751%) started, 517 in queue, 12 running] Running Test DNA_methylation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DNA_methylation/command.sh Finished DNA_methylation in 7 seconds [~ 286 test (35.66084788029925%) started, 516 in queue, 12 running] Running Test ContactMolecularSurface ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ContactMolecularSurface/command.sh Finished SID_ERMS_prediction in 105 seconds [~ 287 test (35.785536159600994%) started, 515 in queue, 12 running] Running Test CCS_PARCS ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/CCS_PARCS/command.sh Finished HDXEnergy in 61 seconds [~ 288 test (35.910224438902745%) started, 514 in queue, 12 running] Running Test BFactorSelector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/BFactorSelector/command.sh Finished CCS_PARCS in 5 seconds [~ 289 test (36.03491271820449%) started, 513 in queue, 12 running] Running Test AlignPDBInfoToSequences ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/AlignPDBInfoToSequences/command.sh Finished DumpTrajectoryEnergy in 37 seconds [~ 290 test (36.15960099750623%) started, 512 in queue, 12 running] Running Test mm_params ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mm_params/command.sh Finished DumpTrajectoryEnergy_packing in 39 seconds [~ 291 test (36.28428927680798%) started, 511 in queue, 12 running] Running Test add_helix_sequence_constraints ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/add_helix_sequence_constraints/command.sh Finished ContactMolecularSurface in 38 seconds [~ 292 test (36.408977556109726%) started, 510 in queue, 12 running] Running Test autoNOE_rosetta ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/autoNOE_rosetta/command.sh Finished auto-drrafter_setup_run_R3 in 218 seconds [~ 293 test (36.53366583541147%) started, 509 in queue, 12 running] Running Test bundlegridsampler_composition_energy ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_composition_energy/command.sh Finished BFactorSelector in 38 seconds [~ 294 test (36.65835411471322%) started, 508 in queue, 12 running] Running Test ligand_dock_ensemble ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_dock_ensemble/command.sh Finished mm_params in 55 seconds [~ 295 test (36.78304239401496%) started, 507 in queue, 12 running] Running Test add_helix_sequence_constraints_advanced_setup ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/add_helix_sequence_constraints_advanced_setup/command.sh Finished buried_unsat_voids_hbnet_design_symm in 324 seconds [~ 296 test (36.907730673316706%) started, 506 in queue, 12 running] Running Test antibody_designer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_designer/command.sh Finished AlignPDBInfoToSequences in 107 seconds [~ 297 test (37.03241895261846%) started, 505 in queue, 12 running] Running Test glycan_tree_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycan_tree_relax/command.sh Finished antibody_designer_xml in 289 seconds [~ 298 test (37.1571072319202%) started, 504 in queue, 12 running] Running Test ppi_v3_suiteC ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteC/command.sh Finished autoNOE_rosetta in 173 seconds [~ 299 test (37.281795511221944%) started, 503 in queue, 12 running] Running Test swa_rna_erraser ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_erraser/command.sh Finished PolarDesign2019 in 323 seconds [~ 300 test (37.406483790523694%) started, 502 in queue, 12 running] Running Test swm_rna_srl_triplet ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_srl_triplet/command.sh Finished auto-drrafter_setup_run_R1 in 412 seconds [~ 301 test (37.53117206982544%) started, 501 in queue, 12 running] Running Test dna_interface_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dna_interface_design/command.sh Finished ccd_ends_graft_mover_rs in 499 seconds [~ 302 test (37.65586034912718%) started, 500 in queue, 12 running] Running Test ppi_v3_suiteF ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteF/command.sh Finished auto-drrafter_setup_run_R2 in 480 seconds [~ 303 test (37.780548628428924%) started, 499 in queue, 12 running] Running Test validate_database ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/validate_database/command.sh Finished swa_rna_erraser in 122 seconds [~ 304 test (37.905236907730675%) started, 498 in queue, 12 running] Running Test ddG_of_mutation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ddG_of_mutation/command.sh Finished antibody_designer in 281 seconds [~ 305 test (38.02992518703242%) started, 497 in queue, 12 running] Running Test swa_protein_loop_sampler ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_loop_sampler/command.sh Finished dna_interface_design in 227 seconds [~ 306 test (38.15461346633416%) started, 496 in queue, 12 running] Running Test composition_energy_layers ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/composition_energy_layers/command.sh Finished add_helix_sequence_constraints_advanced_setup in 447 seconds [~ 307 test (38.27930174563591%) started, 495 in queue, 12 running] Running Test pertmin ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pertmin/command.sh Finished bundlegridsampler_composition_energy in 508 seconds [~ 308 test (38.403990024937656%) started, 494 in queue, 12 running] Running Test bundlegridsampler_composition_energy_fract_range ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_composition_energy_fract_range/command.sh Finished swa_protein_loop_sampler in 179 seconds [~ 309 test (38.5286783042394%) started, 493 in queue, 12 running] Running Test fiber_diffraction ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fiber_diffraction/command.sh Finished add_helix_sequence_constraints in 541 seconds [~ 310 test (38.65336658354115%) started, 492 in queue, 12 running] Running Test simple_cycpep_predict ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict/command.sh Finished ppi_v3_suiteC in 434 seconds [~ 311 test (38.77805486284289%) started, 491 in queue, 12 running] Running Test swa_protein_combine_loops ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_combine_loops/command.sh Finished ppi_v3_suiteF in 353 seconds [~ 312 test (38.90274314214464%) started, 490 in queue, 12 running] Running Test bundlegridsampler_copy_pitch ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_copy_pitch/command.sh Finished swa_protein_combine_loops in 126 seconds [~ 313 test (39.02743142144639%) started, 489 in queue, 12 running] Running Test hotspot_hashing ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hotspot_hashing/command.sh Finished swm_rna_srl_triplet in 484 seconds [~ 314 test (39.15211970074813%) started, 488 in queue, 12 running] Running Test coupled_moves ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/coupled_moves/command.sh Finished validate_database in 417 seconds [~ 315 test (39.276807980049874%) started, 487 in queue, 12 running] Running Test app_exception_handling ulimit -t 7200 && bash /home/benchmark/rosetta/tests/integration/new/app_exception_handling/command.sh Finished simple_cycpep_predict in 177 seconds [~ 316 test (39.401496259351624%) started, 486 in queue, 12 running] Running Test rna_denovo_base_pair_constraints ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_base_pair_constraints/command.sh Finished glycan_tree_relax in 637 seconds [~ 317 test (39.52618453865337%) started, 485 in queue, 12 running] Running Test motif_dna_packer_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/motif_dna_packer_design/command.sh Finished pertmin in 270 seconds [~ 318 test (39.65087281795511%) started, 484 in queue, 12 running] Running Test simple_cycpep_predict_anglelength ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_anglelength/command.sh Finished composition_energy_layers in 325 seconds [~ 319 test (39.775561097256855%) started, 483 in queue, 12 running] Running Test nonideal_rtmin ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/nonideal_rtmin/command.sh Finished bundlegridsampler_composition_energy_fract_range in 254 seconds [~ 320 test (39.900249376558605%) started, 482 in queue, 12 running] Running Test mirror_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mirror_symm/command.sh Finished app_exception_handling in 115 seconds [~ 321 test (40.02493765586035%) started, 481 in queue, 12 running] Running Test simple_cycpep_predict_angle ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_angle/command.sh Finished ddG_of_mutation in 567 seconds [~ 322 test (40.14962593516209%) started, 480 in queue, 12 running] Running Test simple_cycpep_predict_cartesian ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_cartesian/command.sh Finished motif_dna_packer_design in 165 seconds [~ 323 test (40.27431421446384%) started, 479 in queue, 12 running] Running Test fiber_diffraction_fad ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fiber_diffraction_fad/command.sh Finished bundlegridsampler_copy_pitch in 317 seconds [~ 324 test (40.399002493765586%) started, 478 in queue, 12 running] Running Test rna_puzzle12_P5P6P7_DMS ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_puzzle12_P5P6P7_DMS/command.sh Finished simple_cycpep_predict_angle in 136 seconds [~ 325 test (40.52369077306733%) started, 477 in queue, 12 running] Running Test ddG_ensemble ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ddG_ensemble/command.sh Finished ligand_dock_ensemble in 946 seconds [~ 326 test (40.64837905236908%) started, 476 in queue, 12 running] Running Test SnugDock ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/SnugDock/command.sh Finished mirror_symm in 195 seconds [~ 327 test (40.77306733167082%) started, 475 in queue, 12 running] Running Test rs_loophash ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rs_loophash/command.sh Finished simple_cycpep_predict_anglelength in 231 seconds [~ 328 test (40.89775561097257%) started, 474 in queue, 12 running] Running Test hbnet_asymm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbnet_asymm/command.sh Finished hotspot_hashing in 322 seconds [~ 329 test (41.02244389027432%) started, 473 in queue, 12 running] Running Test swa_protein_CCDclose ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_CCDclose/command.sh Finished simple_cycpep_predict_cartesian in 179 seconds [~ 330 test (41.14713216957606%) started, 472 in queue, 12 running] Running Test stepwise_lores ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/stepwise_lores/command.sh Finished rna_puzzle12_P5P6P7_DMS in 158 seconds [~ 331 test (41.271820448877804%) started, 471 in queue, 12 running] Running Test rosetta_scripts_loops ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosetta_scripts_loops/command.sh Finished stepwise_lores in 23 seconds [~ 332 test (41.39650872817955%) started, 470 in queue, 12 running] Running Test flexpepdock ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/flexpepdock/command.sh Finished fiber_diffraction_fad in 186 seconds [~ 333 test (41.5211970074813%) started, 469 in queue, 12 running] Running Test simple_glycosylation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_glycosylation/command.sh Finished fiber_diffraction in 598 seconds [~ 334 test (41.64588528678304%) started, 468 in queue, 12 running] Running Test simple_cycpep_predict_tbmb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_tbmb/command.sh Finished hbnet_asymm in 151 seconds [~ 335 test (41.770573566084785%) started, 467 in queue, 12 running] Running Test simple_cycpep_predict_setting ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_setting/command.sh Finished coupled_moves in 450 seconds [~ 336 test (41.895261845386536%) started, 466 in queue, 12 running] Running Test glycan_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycan_relax/command.sh Finished rs_loophash in 187 seconds [~ 337 test (42.01995012468828%) started, 465 in queue, 12 running] Running Test swa_rna_gagu_09_sample_virtual_ribose ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_09_sample_virtual_ribose/command.sh Finished nonideal_rtmin in 439 seconds [~ 338 test (42.14463840399002%) started, 464 in queue, 12 running] Running Test vip ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/vip/command.sh Finished rna_denovo_base_pair_constraints in 511 seconds [~ 339 test (42.26932668329177%) started, 463 in queue, 12 running] Running Test d_workflow ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/d_workflow/command.sh Finished simple_cycpep_predict_setting in 81 seconds [~ 340 test (42.394014962593516%) started, 462 in queue, 12 running] Running Test test1_benchmark ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/test1_benchmark/command.sh Finished flexpepdock in 226 seconds [~ 341 test (42.51870324189526%) started, 461 in queue, 12 running] Running Test splice_in_4loops_shorter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_in_4loops_shorter/command.sh Finished simple_cycpep_predict_tbmb in 178 seconds [~ 342 test (42.64339152119701%) started, 460 in queue, 12 running] Running Test match_6cpa ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/match_6cpa/command.sh Finished ddG_ensemble in 358 seconds [~ 343 test (42.768079800498754%) started, 459 in queue, 12 running] Running Test LoopAnalyzer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/LoopAnalyzer/command.sh Finished swa_protein_CCDclose in 345 seconds [~ 344 test (42.8927680798005%) started, 458 in queue, 12 running] Running Test perturb_helical_bundle_copying_pitch ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/perturb_helical_bundle_copying_pitch/command.sh Finished swa_rna_gagu_09_sample_virtual_ribose in 213 seconds [~ 345 test (43.01745635910225%) started, 457 in queue, 12 running] Running Test antibody_H3 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_H3/command.sh Finished splice_in_4loops_shorter in 85 seconds [~ 346 test (43.14214463840399%) started, 456 in queue, 12 running] Running Test ligand_water_docking ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_water_docking/command.sh Finished match_6cpa in 99 seconds [~ 347 test (43.266832917705734%) started, 455 in queue, 12 running] Running Test cyclization ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cyclization/command.sh Finished rosetta_scripts_loops in 362 seconds [~ 348 test (43.39152119700748%) started, 454 in queue, 12 running] Running Test relax_w_allatom_cst ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/relax_w_allatom_cst/command.sh Finished d_workflow in 215 seconds [~ 349 test (43.51620947630923%) started, 453 in queue, 12 running] Running Test mr_protocols ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mr_protocols/command.sh Finished SnugDock in 480 seconds [~ 350 test (43.64089775561097%) started, 452 in queue, 12 running] Running Test hbnet ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbnet/command.sh Finished simple_glycosylation in 377 seconds [~ 351 test (43.765586034912715%) started, 451 in queue, 12 running] Running Test supercharge ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/supercharge/command.sh Finished LoopAnalyzer in 177 seconds [~ 352 test (43.890274314214466%) started, 450 in queue, 12 running] Running Test glycosylation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycosylation/command.sh Finished vip in 276 seconds [~ 353 test (44.01496259351621%) started, 449 in queue, 12 running] Running Test hybridization ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hybridization/command.sh Finished glycosylation in 15 seconds [~ 354 test (44.13965087281795%) started, 448 in queue, 12 running] Running Test AnchorFinder ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/AnchorFinder/command.sh Finished perturb_helical_bundle_copying_pitch in 165 seconds [~ 355 test (44.2643391521197%) started, 447 in queue, 12 running] Running Test rna_puzzle5_p2_GAAA_mini ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_puzzle5_p2_GAAA_mini/command.sh Finished rna_puzzle5_p2_GAAA_mini in 26 seconds [~ 356 test (44.38902743142145%) started, 446 in queue, 12 running] Running Test rna_denovo ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo/command.sh Finished test1_benchmark in 336 seconds [~ 357 test (44.51371571072319%) started, 445 in queue, 12 running] Running Test jd2test_mmCIFin_PDBout ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jd2test_mmCIFin_PDBout/command.sh Finished AnchorFinder in 57 seconds [~ 358 test (44.63840399002494%) started, 444 in queue, 12 running] Running Test jd2test_mmCIFIO ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jd2test_mmCIFIO/command.sh Finished ligand_water_docking in 196 seconds [~ 359 test (44.763092269326684%) started, 443 in queue, 12 running] Running Test hts_io ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hts_io/command.sh Finished hbnet in 151 seconds [~ 360 test (44.88778054862843%) started, 442 in queue, 12 running] Running Test secondary_structure_output ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/secondary_structure_output/command.sh Finished mr_protocols in 208 seconds [~ 361 test (45.01246882793018%) started, 441 in queue, 12 running] Running Test rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation/command.sh Finished hybridization in 169 seconds [~ 362 test (45.13715710723192%) started, 440 in queue, 12 running] Running Test mp_symdock ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_symdock/command.sh Finished relax_w_allatom_cst in 242 seconds [~ 363 test (45.261845386533665%) started, 439 in queue, 12 running] Running Test swa_protein_prepack ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_prepack/command.sh Finished rna_denovo in 153 seconds [~ 364 test (45.38653366583541%) started, 438 in queue, 12 running] Running Test range_relax_w_cst ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/range_relax_w_cst/command.sh Finished secondary_structure_output in 100 seconds [~ 365 test (45.51122194513716%) started, 437 in queue, 12 running] Running Test generate_6Dloopclose ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/generate_6Dloopclose/command.sh Finished hts_io in 129 seconds [~ 366 test (45.6359102244389%) started, 436 in queue, 12 running] Running Test splice_in_4loops_longer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_in_4loops_longer/command.sh Finished supercharge in 257 seconds [~ 367 test (45.760598503740646%) started, 435 in queue, 12 running] Running Test ligand_dock_script ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_dock_script/command.sh Finished glycan_relax in 574 seconds [~ 368 test (45.885286783042396%) started, 434 in queue, 12 running] Running Test ligand_database_io ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_database_io/command.sh Finished splice_in_4loops_longer in 75 seconds [~ 369 test (46.00997506234414%) started, 433 in queue, 12 running] Running Test remodel_disulfides_rosettascripts ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/remodel_disulfides_rosettascripts/command.sh Finished mp_symdock in 130 seconds [~ 370 test (46.13466334164588%) started, 432 in queue, 12 running] Running Test splice_out_L1_L2_shorter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_L1_L2_shorter/command.sh Finished generate_6Dloopclose in 109 seconds [~ 371 test (46.25935162094763%) started, 431 in queue, 12 running] Running Test ppi_v3_suiteB ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteB/command.sh Finished jd2test_mmCIFIO in 271 seconds [~ 372 test (46.38403990024938%) started, 430 in queue, 12 running] Running Test swm_build_full_model ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_build_full_model/command.sh Finished jd2test_mmCIFin_PDBout in 279 seconds [~ 373 test (46.50872817955112%) started, 429 in queue, 12 running] Running Test swa_protein_cluster ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_cluster/command.sh Finished splice_out_L1_L2_shorter in 55 seconds [~ 374 test (46.63341645885287%) started, 428 in queue, 12 running] Running Test sdf_reader ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sdf_reader/command.sh Finished swa_protein_cluster in 17 seconds [~ 375 test (46.758104738154614%) started, 427 in queue, 12 running] Running Test splice_out_H1_H2_longer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_H1_H2_longer/command.sh Finished range_relax_w_cst in 172 seconds [~ 376 test (46.88279301745636%) started, 426 in queue, 12 running] Running Test UBQ_E2_thioester_extra_bodies ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/UBQ_E2_thioester_extra_bodies/command.sh Finished swa_protein_prepack in 203 seconds [~ 377 test (47.00748129675811%) started, 425 in queue, 12 running] Running Test mp_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_relax/command.sh Finished swm_build_full_model in 36 seconds [~ 378 test (47.13216957605985%) started, 424 in queue, 12 running] Running Test match_1n9l ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/match_1n9l/command.sh Finished ligand_dock_script in 173 seconds [~ 379 test (47.256857855361595%) started, 423 in queue, 12 running] Running Test bundlegridsampler_epsilon ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_epsilon/command.sh Finished ligand_database_io in 185 seconds [~ 380 test (47.38154613466334%) started, 422 in queue, 12 running] Running Test PDB_diagnostic ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/PDB_diagnostic/command.sh Finished rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation in 274 seconds [~ 381 test (47.50623441396509%) started, 421 in queue, 12 running] Running Test symm_disulfidize ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symm_disulfidize/command.sh Finished PDB_diagnostic in 38 seconds [~ 382 test (47.63092269326683%) started, 420 in queue, 12 running] Running Test splice_out_H1_H2_shorter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_H1_H2_shorter/command.sh Finished ppi_v3_suiteB in 143 seconds [~ 383 test (47.755610972568576%) started, 419 in queue, 12 running] Running Test splice_out_H1_H2_same ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_H1_H2_same/command.sh Finished splice_out_H1_H2_longer in 98 seconds [~ 384 test (47.880299251870326%) started, 418 in queue, 12 running] Running Test fast_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fast_relax/command.sh Finished cyclization in 563 seconds [~ 385 test (48.00498753117207%) started, 417 in queue, 12 running] Running Test enzdes ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enzdes/command.sh Finished sdf_reader in 129 seconds [~ 386 test (48.12967581047381%) started, 416 in queue, 12 running] Running Test batch_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/batch_relax/command.sh Finished remodel_disulfides_rosettascripts in 200 seconds [~ 387 test (48.254364089775564%) started, 415 in queue, 12 running] Running Test kinemage_grid_output ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/kinemage_grid_output/command.sh Finished mp_relax in 136 seconds [~ 388 test (48.37905236907731%) started, 414 in queue, 12 running] Running Test remodel_helical_repeat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/remodel_helical_repeat/command.sh Finished splice_out_H1_H2_shorter in 62 seconds [~ 389 test (48.50374064837905%) started, 413 in queue, 12 running] Running Test threefold_symm_peptide_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/threefold_symm_peptide_design/command.sh Finished splice_out_H1_H2_same in 70 seconds [~ 390 test (48.6284289276808%) started, 412 in queue, 12 running] Running Test rna_denovo_RNP_low_res ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_RNP_low_res/command.sh Finished bundlegridsampler_epsilon in 139 seconds [~ 391 test (48.753117206982544%) started, 411 in queue, 12 running] Running Test KIC_with_fragments ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/KIC_with_fragments/command.sh Finished match_1n9l in 169 seconds [~ 392 test (48.87780548628429%) started, 410 in queue, 12 running] Running Test splice_out_L1_L2_same ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_L1_L2_same/command.sh Finished kinemage_grid_output in 68 seconds [~ 393 test (49.00249376558604%) started, 409 in queue, 12 running] Running Test hshash_utils ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hshash_utils/command.sh Finished UBQ_E2_thioester_extra_bodies in 203 seconds [~ 394 test (49.12718204488778%) started, 408 in queue, 12 running] Running Test ppi_v3_suiteE ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteE/command.sh Finished antibody_H3 in 698 seconds [~ 395 test (49.251870324189525%) started, 407 in queue, 12 running] Running Test thermal_sampler ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/thermal_sampler/command.sh Finished symm_disulfidize in 157 seconds [~ 396 test (49.37655860349127%) started, 406 in queue, 12 running] Running Test AlterSpecDisruption ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/AlterSpecDisruption/command.sh Finished hshash_utils in 28 seconds [~ 397 test (49.50124688279302%) started, 405 in queue, 12 running] Running Test ppi_v3_suiteA ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteA/command.sh Finished threefold_symm_peptide_design in 90 seconds [~ 398 test (49.62593516209476%) started, 404 in queue, 12 running] Running Test dock_with_hotspot_place_simultaneously ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dock_with_hotspot_place_simultaneously/command.sh Finished enzdes in 137 seconds [~ 399 test (49.750623441396506%) started, 403 in queue, 12 running] Running Test docking_ensemble ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_ensemble/command.sh Finished splice_out_L1_L2_same in 69 seconds [~ 400 test (49.87531172069826%) started, 402 in queue, 12 running] Running Test swm_rna_move_inside_helix_by_jump ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_move_inside_helix_by_jump/command.sh Finished remodel_helical_repeat in 129 seconds [~ 401 test (50.0%) started, 401 in queue, 12 running] Running Test pmut_scan ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pmut_scan/command.sh Finished rna_denovo_RNP_low_res in 117 seconds [~ 402 test (50.12468827930174%) started, 400 in queue, 12 running] Running Test disulfidize_beta_cys ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/disulfidize_beta_cys/command.sh Finished thermal_sampler in 65 seconds [~ 403 test (50.249376558603494%) started, 399 in queue, 12 running] Running Test swm_l_rna ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_l_rna/command.sh Finished fast_relax in 195 seconds [~ 404 test (50.37406483790524%) started, 398 in queue, 12 running] Running Test rna_puzzle11_H2H3H4_run3_connectU40 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_puzzle11_H2H3H4_run3_connectU40/command.sh Finished batch_relax in 178 seconds [~ 405 test (50.49875311720698%) started, 397 in queue, 12 running] Running Test mp_find_interface ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_find_interface/command.sh Finished ppi_v3_suiteE in 103 seconds [~ 406 test (50.62344139650873%) started, 396 in queue, 12 running] Running Test hotspot_graft ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hotspot_graft/command.sh Finished dock_with_hotspot_place_simultaneously in 75 seconds [~ 407 test (50.748129675810475%) started, 395 in queue, 12 running] Running Test zinc_heterodimer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/zinc_heterodimer/command.sh Finished KIC_with_fragments in 169 seconds [~ 408 test (50.87281795511222%) started, 394 in queue, 12 running] Running Test rna_denovo_RNP_refine_native ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_RNP_refine_native/command.sh Finished ppi_v3_suiteA in 115 seconds [~ 409 test (50.99750623441396%) started, 393 in queue, 12 running] Running Test docking_local_refine ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_local_refine/command.sh Finished disulfidize_beta_cys in 104 seconds [~ 410 test (51.12219451371571%) started, 392 in queue, 12 running] Running Test beta_strand_homodimer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/beta_strand_homodimer/command.sh Finished swm_rna_move_inside_helix_by_jump in 136 seconds [~ 411 test (51.246882793017456%) started, 391 in queue, 12 running] Running Test simple_cycpep_predict_cispro ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_cispro/command.sh Finished rna_puzzle11_H2H3H4_run3_connectU40 in 125 seconds [~ 412 test (51.3715710723192%) started, 390 in queue, 12 running] Running Test TryDisulfPermutations ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/TryDisulfPermutations/command.sh Finished AlterSpecDisruption in 202 seconds [~ 413 test (51.49625935162095%) started, 389 in queue, 12 running] Running Test genkic_rama_filter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_rama_filter/command.sh Finished hotspot_graft in 109 seconds [~ 414 test (51.62094763092269%) started, 388 in queue, 12 running] Running Test KIC_vicinity ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/KIC_vicinity/command.sh Finished mp_find_interface in 135 seconds [~ 415 test (51.745635910224436%) started, 387 in queue, 12 running] Running Test task_selector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/task_selector/command.sh Finished swm_l_rna in 162 seconds [~ 416 test (51.87032418952619%) started, 386 in queue, 12 running] Running Test swm_beta_peptide_loop ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_beta_peptide_loop/command.sh Finished pmut_scan in 170 seconds [~ 417 test (51.99501246882793%) started, 385 in queue, 12 running] Running Test docking_site_constraints ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_site_constraints/command.sh Finished genkic_rama_filter in 44 seconds [~ 418 test (52.119700748129674%) started, 384 in queue, 12 running] Running Test splice_out_L1_L2_longer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_L1_L2_longer/command.sh Finished simple_cycpep_predict_cispro in 79 seconds [~ 419 test (52.244389027431424%) started, 383 in queue, 12 running] Running Test rotamer_probability ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rotamer_probability/command.sh Finished rna_denovo_RNP_refine_native in 132 seconds [~ 420 test (52.36907730673317%) started, 382 in queue, 12 running] Running Test rna_farfar_block_stack ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_farfar_block_stack/command.sh Finished zinc_heterodimer in 158 seconds [~ 421 test (52.49376558603491%) started, 381 in queue, 12 running] Running Test ligand_dock_7cpa ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_dock_7cpa/command.sh Finished docking_ensemble in 248 seconds [~ 422 test (52.61845386533666%) started, 380 in queue, 12 running] Running Test hbs_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbs_design/command.sh Finished TryDisulfPermutations in 92 seconds [~ 423 test (52.743142144638405%) started, 379 in queue, 12 running] Finished KIC_vicinity in 87 seconds [~ 423 test (52.743142144638405%) started, 379 in queue, 11 running] Running Test bundlereporter_filter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlereporter_filter/command.sh Running Test AnchoredDesign ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/AnchoredDesign/command.sh Finished docking_local_refine in 172 seconds [~ 425 test (52.99251870324189%) started, 377 in queue, 12 running] Running Test simple_cycpep_predict_symm_gly ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_symm_gly/command.sh Finished swm_beta_peptide_loop in 79 seconds [~ 426 test (53.11720698254364%) started, 376 in queue, 12 running] Running Test ppi_v3_suiteG ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteG/command.sh Finished task_selector in 103 seconds [~ 427 test (53.241895261845386%) started, 375 in queue, 12 running] Running Test swm_rna_singleloop ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_singleloop/command.sh Finished splice_out_L1_L2_longer in 76 seconds [~ 428 test (53.36658354114713%) started, 374 in queue, 12 running] Running Test swa_protein_build_at_Nterminus ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_build_at_Nterminus/command.sh Finished docking_site_constraints in 119 seconds [~ 429 test (53.49127182044888%) started, 373 in queue, 12 running] Running Test ppi_v3_suiteD ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteD/command.sh Finished rotamer_probability in 101 seconds [~ 430 test (53.61596009975062%) started, 372 in queue, 12 running] Running Test bundlegridsampler ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler/command.sh Finished rna_farfar_block_stack in 98 seconds [~ 431 test (53.74064837905237%) started, 371 in queue, 12 running] Running Test simple_cycpep_predict_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_design/command.sh Finished ligand_dock_7cpa in 99 seconds [~ 432 test (53.86533665835412%) started, 370 in queue, 12 running] Running Test rs_flexbbmoves ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rs_flexbbmoves/command.sh Finished beta_strand_homodimer in 200 seconds [~ 433 test (53.99002493765586%) started, 369 in queue, 12 running] Running Test swm_protein_loop_sampler ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_protein_loop_sampler/command.sh Finished bundlereporter_filter in 90 seconds [~ 434 test (54.114713216957604%) started, 368 in queue, 12 running] Running Test peptiderive ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/peptiderive/command.sh Finished simple_cycpep_predict_symm_gly in 85 seconds [~ 435 test (54.239401496259354%) started, 367 in queue, 12 running] Running Test oop_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/oop_design/command.sh Finished ppi_v3_suiteG in 91 seconds [~ 436 test (54.3640897755611%) started, 366 in queue, 12 running] Running Test kinematic_looprelax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/kinematic_looprelax/command.sh Finished AnchoredDesign in 112 seconds [~ 437 test (54.48877805486284%) started, 365 in queue, 12 running] Running Test dock_glycans ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dock_glycans/command.sh Finished swm_rna_singleloop in 92 seconds [~ 438 test (54.61346633416459%) started, 364 in queue, 12 running] Running Test bundlegridsampler_design_nstruct_mode ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_design_nstruct_mode/command.sh Finished swa_protein_build_at_Nterminus in 98 seconds [~ 439 test (54.738154613466335%) started, 363 in queue, 12 running] Running Test backrub_pilot ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backrub_pilot/command.sh Finished hbs_design in 147 seconds [~ 440 test (54.86284289276808%) started, 362 in queue, 12 running] Running Test Enzrevert_xml ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/Enzrevert_xml/command.sh Finished simple_cycpep_predict_design in 74 seconds [~ 441 test (54.98753117206982%) started, 361 in queue, 12 running] Running Test KIC_refine ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/KIC_refine/command.sh Finished bundlegridsampler in 84 seconds [~ 442 test (55.11221945137157%) started, 360 in queue, 12 running] Running Test next_generation_KIC ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/next_generation_KIC/command.sh Finished ppi_v3_suiteD in 93 seconds [~ 443 test (55.236907730673316%) started, 359 in queue, 12 running] Running Test simple_cycpep_predict_symmetric_sampling ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_symmetric_sampling/command.sh Finished rs_flexbbmoves in 84 seconds [~ 444 test (55.36159600997506%) started, 358 in queue, 12 running] Running Test rosie_ligand_docking ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosie_ligand_docking/command.sh Finished swm_protein_loop_sampler in 79 seconds [~ 445 test (55.48628428927681%) started, 357 in queue, 12 running] Running Test rna_denovo_bps ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_bps/command.sh Finished rna_denovo_bps in 16 seconds [~ 446 test (55.61097256857855%) started, 356 in queue, 12 running] Running Test features ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features/command.sh Finished simple_cycpep_predict_symmetric_sampling in 28 seconds [~ 447 test (55.7356608478803%) started, 355 in queue, 12 running] Running Test cycpep_symmetry_filter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cycpep_symmetry_filter/command.sh Finished kinematic_looprelax in 107 seconds [~ 448 test (55.86034912718205%) started, 354 in queue, 12 running] Running Test backrub_interface_ddG ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backrub_interface_ddG/command.sh Finished bundlegridsampler_design_nstruct_mode in 93 seconds [~ 449 test (55.98503740648379%) started, 353 in queue, 12 running] Running Test simple_hbondstoatom ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_hbondstoatom/command.sh Finished Enzrevert_xml in 90 seconds [~ 450 test (56.109725685785534%) started, 352 in queue, 12 running] Running Test inv_kin_lig_loop_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/inv_kin_lig_loop_design/command.sh Finished oop_design in 132 seconds [~ 451 test (56.234413965087285%) started, 351 in queue, 12 running] Running Test hbonds_sp2 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbonds_sp2/command.sh Finished KIC_refine in 89 seconds [~ 452 test (56.35910224438903%) started, 350 in queue, 12 running] Running Test hbonds ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbonds/command.sh Finished features in 68 seconds [~ 453 test (56.48379052369077%) started, 349 in queue, 12 running] Running Test fixbb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fixbb/command.sh Finished rosie_ligand_docking in 87 seconds [~ 454 test (56.60847880299252%) started, 348 in queue, 12 running] Running Test entropy_correction ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/entropy_correction/command.sh Finished backrub_pilot in 110 seconds [~ 455 test (56.733167082294266%) started, 347 in queue, 12 running] Running Test bundlegridsampler_z1_offset ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_z1_offset/command.sh Finished dock_glycans in 128 seconds [~ 456 test (56.85785536159601%) started, 346 in queue, 12 running] Running Test bundlegridsampler_z0_offset ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_z0_offset/command.sh Finished cycpep_symmetry_filter in 71 seconds [~ 457 test (56.98254364089775%) started, 345 in queue, 12 running] Running Test rotamer_recovery ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rotamer_recovery/command.sh Finished next_generation_KIC in 113 seconds [~ 458 test (57.1072319201995%) started, 344 in queue, 12 running] Running Test rna_assemble ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_assemble/command.sh Finished simple_hbondstoatom in 62 seconds [~ 459 test (57.231920199501246%) started, 343 in queue, 12 running] Running Test place_simultaneously ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/place_simultaneously/command.sh Finished backrub_interface_ddG in 69 seconds [~ 460 test (57.35660847880299%) started, 342 in queue, 12 running] Running Test doug_dock_design_min_mod2_cal_cal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/doug_dock_design_min_mod2_cal_cal/command.sh Finished rna_assemble in 38 seconds [~ 461 test (57.48129675810474%) started, 341 in queue, 12 running] Running Test docking_full_protocol ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_full_protocol/command.sh Finished rotamer_recovery in 47 seconds [~ 462 test (57.605985037406484%) started, 340 in queue, 12 running] Running Test UBQ_E2_thioester ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/UBQ_E2_thioester/command.sh Finished inv_kin_lig_loop_design in 75 seconds [~ 463 test (57.73067331670823%) started, 339 in queue, 12 running] Running Test symm_rotamer_boltzmann ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symm_rotamer_boltzmann/command.sh Finished hbonds_sp2 in 77 seconds [~ 464 test (57.85536159600998%) started, 338 in queue, 12 running] Running Test splice_out_H3_same ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_H3_same/command.sh Finished hbonds in 87 seconds [~ 465 test (57.98004987531172%) started, 337 in queue, 12 running] Running Test membrane_abinitio ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/membrane_abinitio/command.sh Finished bundlegridsampler_z1_offset in 75 seconds [~ 466 test (58.104738154613464%) started, 336 in queue, 12 running] Running Test docking_distance_constraints ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_distance_constraints/command.sh Finished bundlegridsampler_z0_offset in 75 seconds [~ 467 test (58.229426433915215%) started, 335 in queue, 12 running] Running Test swm_rna_protonated_adenosine ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_protonated_adenosine/command.sh Finished place_simultaneously in 70 seconds [~ 468 test (58.35411471321696%) started, 334 in queue, 12 running] Running Test splice_out_L3_same ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_L3_same/command.sh Finished splice_out_H3_same in 53 seconds [~ 469 test (58.4788029925187%) started, 333 in queue, 12 running] Running Test loop_modeling ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/loop_modeling/command.sh Finished fixbb in 136 seconds [~ 470 test (58.60349127182045%) started, 332 in queue, 12 running] Running Test ligand_motif_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_motif_design/command.sh Finished swm_rna_protonated_adenosine in 57 seconds [~ 471 test (58.728179551122196%) started, 331 in queue, 12 running] Running Test bin_initialization ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bin_initialization/command.sh Finished entropy_correction in 137 seconds [~ 472 test (58.85286783042394%) started, 330 in queue, 12 running] Running Test torsion_restricted_sampling ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/torsion_restricted_sampling/command.sh Finished doug_dock_design_min_mod2_cal_cal in 97 seconds [~ 473 test (58.97755610972568%) started, 329 in queue, 12 running] Running Test swm_protein_move_inside_helix_by_bond ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_protein_move_inside_helix_by_bond/command.sh Finished membrane_abinitio in 74 seconds [~ 474 test (59.10224438902743%) started, 328 in queue, 12 running] Running Test sequence_profile_constraints ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sequence_profile_constraints/command.sh Finished docking_full_protocol in 94 seconds [~ 475 test (59.22693266832918%) started, 327 in queue, 12 running] Running Test rosetta_scripts_include ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosetta_scripts_include/command.sh Finished symm_rotamer_boltzmann in 109 seconds [~ 476 test (59.35162094763092%) started, 326 in queue, 12 running] Running Test rna_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_design/command.sh Finished UBQ_E2_thioester in 116 seconds [~ 477 test (59.47630922693267%) started, 325 in queue, 12 running] Running Test perturb_helical_bundle ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/perturb_helical_bundle/command.sh Finished splice_out_L3_same in 78 seconds [~ 478 test (59.600997506234414%) started, 324 in queue, 12 running] Running Test helical_bundle_nonideal ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_nonideal/command.sh Finished swm_protein_move_inside_helix_by_bond in 61 seconds [~ 479 test (59.72568578553616%) started, 323 in queue, 12 running] Running Test swm_rna_nickedhelix ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_nickedhelix/command.sh Finished docking_distance_constraints in 130 seconds [~ 480 test (59.85037406483791%) started, 322 in queue, 12 running] Running Test mf_fixbb_des ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mf_fixbb_des/command.sh Finished rosetta_scripts_include in 60 seconds [~ 481 test (59.97506234413965%) started, 321 in queue, 12 running] Running Test match_xml ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/match_xml/command.sh Finished ligand_motif_design in 75 seconds [~ 482 test (60.099750623441395%) started, 320 in queue, 12 running] Running Test genkic_lowmemory_mode ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_lowmemory_mode/command.sh Finished bin_initialization in 75 seconds [~ 483 test (60.224438902743145%) started, 319 in queue, 12 running] Running Test flexpepdock_abinitio ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/flexpepdock_abinitio/command.sh Finished sequence_profile_constraints in 71 seconds [~ 484 test (60.34912718204489%) started, 318 in queue, 12 running] Running Test features_parallel ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features_parallel/command.sh Finished perturb_helical_bundle in 62 seconds [~ 485 test (60.47381546134663%) started, 317 in queue, 12 running] Running Test swa_rna_gagu_15_combine_long_loop_sampling ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_15_combine_long_loop_sampling/command.sh Finished loop_modeling in 127 seconds [~ 486 test (60.598503740648376%) started, 316 in queue, 12 running] Running Test splice_out_H3_shorter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_H3_shorter/command.sh Finished rna_design in 77 seconds [~ 487 test (60.723192019950126%) started, 315 in queue, 12 running] Running Test splice_out_H3_longer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_H3_longer/command.sh Finished helical_bundle_nonideal in 60 seconds [~ 488 test (60.84788029925187%) started, 314 in queue, 12 running] Running Test residue_energy_breakdown ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/residue_energy_breakdown/command.sh Finished swm_rna_nickedhelix in 46 seconds [~ 489 test (60.97256857855361%) started, 313 in queue, 12 running] Running Test readin_dna_rna_protein ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/readin_dna_rna_protein/command.sh Finished torsion_restricted_sampling in 118 seconds [~ 490 test (61.09725685785536%) started, 312 in queue, 12 running] Running Test fuzzy ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fuzzy/command.sh Finished genkic_lowmemory_mode in 63 seconds [~ 491 test (61.22194513715711%) started, 311 in queue, 12 running] Running Test docking_ensemble_prepack ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_ensemble_prepack/command.sh Finished mf_fixbb_des in 70 seconds [~ 492 test (61.34663341645885%) started, 310 in queue, 12 running] Running Test bundlegridsampler_multirepeat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_multirepeat/command.sh Finished match_xml in 69 seconds [~ 493 test (61.4713216957606%) started, 309 in queue, 12 running] Running Test ThreadingInputter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ThreadingInputter/command.sh Finished splice_out_H3_shorter in 44 seconds [~ 494 test (61.596009975062344%) started, 308 in queue, 12 running] Running Test score12_docking ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/score12_docking/command.sh Finished swa_rna_gagu_15_combine_long_loop_sampling in 54 seconds [~ 495 test (61.72069825436409%) started, 307 in queue, 12 running] Running Test rosetta_scripts_setup ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosetta_scripts_setup/command.sh Finished features_parallel in 74 seconds [~ 496 test (61.84538653366584%) started, 306 in queue, 12 running] Running Test pocket_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pocket_relax/command.sh Finished readin_dna_rna_protein in 53 seconds [~ 497 test (61.97007481296758%) started, 305 in queue, 12 running] Running Test mp_dock ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_dock/command.sh Finished residue_energy_breakdown in 55 seconds [~ 498 test (62.094763092269325%) started, 304 in queue, 12 running] Running Test bundlegridsampler_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_design/command.sh Finished fuzzy in 46 seconds [~ 499 test (62.219451371571076%) started, 303 in queue, 12 running] Running Test UBQ_Gp_LYX-Cterm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/UBQ_Gp_LYX-Cterm/command.sh Finished flexpepdock_abinitio in 107 seconds [~ 500 test (62.34413965087282%) started, 302 in queue, 12 running] Running Test LayerDesign ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/LayerDesign/command.sh Finished rosetta_scripts_setup in 37 seconds [~ 501 test (62.46882793017456%) started, 301 in queue, 12 running] Running Test swa_protein_build_at_Cterminus ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_build_at_Cterminus/command.sh Finished bundlegridsampler_multirepeat in 54 seconds [~ 502 test (62.593516209476306%) started, 300 in queue, 12 running] Running Test jd2test_PDBin_mmCIFout_extra_data_separate ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jd2test_PDBin_mmCIFout_extra_data_separate/command.sh Finished ThreadingInputter in 57 seconds [~ 503 test (62.718204488778056%) started, 299 in queue, 12 running] Running Test jd2test_PDBin_mmCIFout ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jd2test_PDBin_mmCIFout/command.sh Finished mp_dock in 43 seconds [~ 504 test (62.8428927680798%) started, 298 in queue, 12 running] Running Test jd2test_PDBIO ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jd2test_PDBIO/command.sh Finished score12_docking in 67 seconds [~ 505 test (62.96758104738154%) started, 297 in queue, 12 running] Running Test density_refine ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/density_refine/command.sh Finished bundlegridsampler_design in 63 seconds [~ 506 test (63.092269326683294%) started, 296 in queue, 12 running] Running Test add_constraints_to_current_conformation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/add_constraints_to_current_conformation/command.sh Finished LayerDesign in 55 seconds [~ 507 test (63.21695760598504%) started, 295 in queue, 12 running] Running Test LayerSelector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/LayerSelector/command.sh Finished splice_out_H3_longer in 136 seconds [~ 508 test (63.34164588528678%) started, 294 in queue, 12 running] Running Test FloppyTail ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/FloppyTail/command.sh Finished swa_protein_build_at_Cterminus in 59 seconds [~ 509 test (63.46633416458853%) started, 293 in queue, 12 running] Running Test threefoldlinkermover_tbmb_symmetric ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/threefoldlinkermover_tbmb_symmetric/command.sh Finished pocket_relax in 97 seconds [~ 510 test (63.591022443890274%) started, 292 in queue, 12 running] Running Test swm_rna_loop_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_loop_design/command.sh Finished UBQ_Gp_LYX-Cterm in 91 seconds [~ 511 test (63.71571072319202%) started, 291 in queue, 12 running] Running Test swm_rna_fourwayjunction ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_fourwayjunction/command.sh Finished jd2test_PDBin_mmCIFout_extra_data_separate in 63 seconds [~ 512 test (63.84039900249377%) started, 290 in queue, 12 running] Running Test rna_puzzle6_j67_into_p6p7rigidbody_thread1 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_puzzle6_j67_into_p6p7rigidbody_thread1/command.sh Finished jd2test_PDBin_mmCIFout in 66 seconds [~ 513 test (63.96508728179551%) started, 289 in queue, 12 running] Running Test posttranslationalmod_io ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/posttranslationalmod_io/command.sh Finished jd2test_PDBIO in 65 seconds [~ 514 test (64.08977556109726%) started, 288 in queue, 12 running] Running Test motif_score_filter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/motif_score_filter/command.sh Finished swm_rna_loop_design in 25 seconds [~ 515 test (64.214463840399%) started, 287 in queue, 12 running] Running Test cluster_alns ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cluster_alns/command.sh Finished add_constraints_to_current_conformation in 58 seconds [~ 516 test (64.33915211970074%) started, 286 in queue, 12 running] Running Test backrub ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backrub/command.sh Finished threefoldlinkermover_tbmb_symmetric in 37 seconds [~ 517 test (64.46384039900249%) started, 285 in queue, 12 running] Running Test antibody_graft ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_graft/command.sh Finished density_refine in 79 seconds [~ 518 test (64.58852867830424%) started, 284 in queue, 12 running] Finished LayerSelector in 61 seconds [~ 518 test (64.58852867830424%) started, 284 in queue, 11 running] Running Test antibody_H3_camelid ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_H3_camelid/command.sh Running Test score_only_silence ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/score_only_silence/command.sh Finished FloppyTail in 53 seconds [~ 520 test (64.83790523690773%) started, 282 in queue, 12 running] Running Test mf_flexbb_sc ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mf_flexbb_sc/command.sh Finished rna_puzzle6_j67_into_p6p7rigidbody_thread1 in 47 seconds [~ 521 test (64.96259351620948%) started, 281 in queue, 12 running] Running Test UBQ_Gp_CYD-CYD ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/UBQ_Gp_CYD-CYD/command.sh Finished peptiderive in 597 seconds [~ 522 test (65.08728179551122%) started, 280 in queue, 12 running] Running Test splice_out_L3_longer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_L3_longer/command.sh Finished posttranslationalmod_io in 47 seconds [~ 523 test (65.21197007481297%) started, 279 in queue, 12 running] Running Test simple_dna_test ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_dna_test/command.sh Finished swm_rna_fourwayjunction in 58 seconds [~ 524 test (65.33665835411472%) started, 278 in queue, 12 running] Running Test molfile_to_params ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/molfile_to_params/command.sh Finished motif_score_filter in 46 seconds [~ 525 test (65.46134663341645%) started, 277 in queue, 12 running] Running Test centroid_from_fullatom ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/centroid_from_fullatom/command.sh Finished cluster_alns in 45 seconds [~ 526 test (65.5860349127182%) started, 276 in queue, 12 running] Running Test ReadResfile_with_selector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ReadResfile_with_selector/command.sh Finished molfile_to_params in 20 seconds [~ 527 test (65.71072319201996%) started, 275 in queue, 12 running] Running Test AnchoredPDBCreator ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/AnchoredPDBCreator/command.sh Finished mf_flexbb_sc in 38 seconds [~ 528 test (65.83541147132169%) started, 274 in queue, 12 running] Running Test threefoldlinkermover_tbmb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/threefoldlinkermover_tbmb/command.sh Finished antibody_graft in 63 seconds [~ 529 test (65.96009975062344%) started, 273 in queue, 12 running] Running Test swa_rna_gagu_13_chunk_combination_and_closure ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_13_chunk_combination_and_closure/command.sh Finished score_only_silence in 59 seconds [~ 530 test (66.08478802992519%) started, 272 in queue, 12 running] Running Test sequence_recovery ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sequence_recovery/command.sh Finished centroid_from_fullatom in 47 seconds [~ 531 test (66.20947630922693%) started, 271 in queue, 12 running] Running Test genkic_bin_perturbing ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_bin_perturbing/command.sh Finished simple_dna_test in 62 seconds [~ 532 test (66.33416458852868%) started, 270 in queue, 12 running] Finished threefoldlinkermover_tbmb in 38 seconds [~ 532 test (66.33416458852868%) started, 270 in queue, 11 running] Running Test symmetric_cycpep_align_and_symmetrize ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symmetric_cycpep_align_and_symmetrize/command.sh Running Test splice_out_L3_shorter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_L3_shorter/command.sh Finished ReadResfile_with_selector in 51 seconds [~ 534 test (66.58354114713217%) started, 268 in queue, 12 running] Running Test ppk ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppk/command.sh Finished UBQ_Gp_CYD-CYD in 73 seconds [~ 535 test (66.70822942643392%) started, 267 in queue, 12 running] Running Test mp_symmetry_load ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_symmetry_load/command.sh Finished swa_rna_gagu_13_chunk_combination_and_closure in 45 seconds [~ 536 test (66.83291770573567%) started, 266 in queue, 12 running] Finished sequence_recovery in 38 seconds [~ 536 test (66.83291770573567%) started, 266 in queue, 11 running] Running Test ligand_dock_grid ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_dock_grid/command.sh Running Test rollmover ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rollmover/command.sh Finished splice_out_L3_longer in 96 seconds [~ 538 test (67.08229426433915%) started, 264 in queue, 12 running] Running Test oop_dock_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/oop_dock_design/command.sh Finished symmetric_cycpep_align_and_symmetrize in 37 seconds [~ 539 test (67.2069825436409%) started, 263 in queue, 12 running] Running Test metalloprotein_abrelax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/metalloprotein_abrelax/command.sh Finished mp_symmetry_load in 35 seconds [~ 540 test (67.33167082294264%) started, 262 in queue, 12 running] Running Test backbonegridsampler_nstruct_mode ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backbonegridsampler_nstruct_mode/command.sh Finished genkic_bin_perturbing in 48 seconds [~ 541 test (67.45635910224439%) started, 261 in queue, 12 running] Running Test backbonegridsampler_multiresidue ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backbonegridsampler_multiresidue/command.sh Finished ppk in 41 seconds [~ 542 test (67.58104738154613%) started, 260 in queue, 12 running] Running Test LayerDesign_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/LayerDesign_symm/command.sh Finished AnchoredPDBCreator in 83 seconds [~ 543 test (67.70573566084788%) started, 259 in queue, 12 running] Running Test swm_rna_move_inside_helix_by_bond ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_move_inside_helix_by_bond/command.sh Finished splice_out_L3_shorter in 62 seconds [~ 544 test (67.83042394014963%) started, 258 in queue, 12 running] Running Test startfrom_file ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/startfrom_file/command.sh Finished ligand_dock_grid in 46 seconds [~ 545 test (67.95511221945137%) started, 257 in queue, 12 running] Running Test simple_cycpep_predict_nmethyl ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_nmethyl/command.sh Finished rollmover in 48 seconds [~ 546 test (68.07980049875312%) started, 256 in queue, 12 running] Running Test perturb_helical_bundle_z_offset ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/perturb_helical_bundle_z_offset/command.sh Finished oop_dock_design in 53 seconds [~ 547 test (68.20448877805487%) started, 255 in queue, 12 running] Running Test perturb_helical_bundle_epsilon ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/perturb_helical_bundle_epsilon/command.sh Finished metalloprotein_abrelax in 49 seconds [~ 548 test (68.3291770573566%) started, 254 in queue, 12 running] Running Test mp_mutate_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_mutate_relax/command.sh Finished backbonegridsampler_multiresidue in 46 seconds [~ 549 test (68.45386533665835%) started, 253 in queue, 12 running] Running Test minimize_with_elec_dens ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/minimize_with_elec_dens/command.sh Finished simple_cycpep_predict_nmethyl in 21 seconds [~ 550 test (68.5785536159601%) started, 252 in queue, 12 running] Running Test metropolis_hastings ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/metropolis_hastings/command.sh Finished LayerDesign_symm in 45 seconds [~ 551 test (68.70324189526184%) started, 251 in queue, 12 running] Running Test fold_cst_new ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fold_cst_new/command.sh Finished backbonegridsampler_nstruct_mode in 52 seconds [~ 552 test (68.82793017456359%) started, 250 in queue, 12 running] Running Test favor_native_residue ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/favor_native_residue/command.sh Finished swm_rna_move_inside_helix_by_bond in 48 seconds [~ 553 test (68.95261845386534%) started, 249 in queue, 12 running] Running Test broker ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/broker/command.sh Finished backrub in 180 seconds [~ 554 test (69.07730673316708%) started, 248 in queue, 12 running] Running Test bin_perturbation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bin_perturbation/command.sh Finished startfrom_file in 42 seconds [~ 555 test (69.20199501246883%) started, 247 in queue, 12 running] Running Test RBOut ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/RBOut/command.sh Finished perturb_helical_bundle_z_offset in 41 seconds [~ 556 test (69.32668329177058%) started, 246 in queue, 12 running] Running Test symmetry_multicomponent ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symmetry_multicomponent/command.sh Finished docking_ensemble_prepack in 360 seconds [~ 557 test (69.45137157107231%) started, 245 in queue, 12 running] Running Test symmetrical_residue_selector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symmetrical_residue_selector/command.sh Finished mp_mutate_relax in 37 seconds [~ 558 test (69.57605985037407%) started, 244 in queue, 12 running] Running Test swm_protein_move_inside_coiledcoil_by_bond ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_protein_move_inside_coiledcoil_by_bond/command.sh Finished perturb_helical_bundle_epsilon in 40 seconds [~ 559 test (69.70074812967582%) started, 243 in queue, 12 running] Running Test swa_rna_gagu_18_rebuild_bulge ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_18_rebuild_bulge/command.sh Finished bin_perturbation in 38 seconds [~ 560 test (69.82543640897755%) started, 242 in queue, 12 running] Running Test swa_rna_gagu_10_prepend_and_ccd_close ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_10_prepend_and_ccd_close/command.sh Finished metropolis_hastings in 50 seconds [~ 561 test (69.9501246882793%) started, 241 in queue, 12 running] Running Test smallmover_resselector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/smallmover_resselector/command.sh Finished fold_cst_new in 51 seconds [~ 562 test (70.07481296758105%) started, 240 in queue, 12 running] Running Test rna_motif ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_motif/command.sh Finished RBOut in 36 seconds [~ 563 test (70.19950124688279%) started, 239 in queue, 12 running] Running Test repack_with_elec_dens ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/repack_with_elec_dens/command.sh Finished minimize_with_elec_dens in 59 seconds [~ 564 test (70.32418952618454%) started, 238 in queue, 12 running] Running Test rama_mutation_selector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rama_mutation_selector/command.sh Finished antibody_H3_camelid in 229 seconds [~ 565 test (70.44887780548629%) started, 237 in queue, 12 running] Running Test mp_range_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_range_relax/command.sh Finished broker in 60 seconds [~ 566 test (70.57356608478803%) started, 236 in queue, 12 running] Running Test min_pack_min ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/min_pack_min/command.sh Finished symmetrical_residue_selector in 29 seconds [~ 567 test (70.69825436408978%) started, 235 in queue, 12 running] Running Test make_symmdef_file ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_symmdef_file/command.sh Finished symmetry_multicomponent in 47 seconds [~ 568 test (70.82294264339153%) started, 234 in queue, 12 running] Running Test genkic_ramaprepro_sampling ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_ramaprepro_sampling/command.sh Finished rna_motif in 22 seconds [~ 569 test (70.94763092269326%) started, 233 in queue, 12 running] Running Test ddG_scan ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ddG_scan/command.sh Finished swa_rna_gagu_18_rebuild_bulge in 41 seconds [~ 570 test (71.07231920199501%) started, 232 in queue, 12 running] Running Test UnsatSelector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/UnsatSelector/command.sh Finished swa_rna_gagu_10_prepend_and_ccd_close in 42 seconds [~ 571 test (71.19700748129675%) started, 231 in queue, 12 running] Running Test PeptideCyclizeMover ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/PeptideCyclizeMover/command.sh Finished swm_protein_move_inside_coiledcoil_by_bond in 50 seconds [~ 572 test (71.3216957605985%) started, 230 in queue, 12 running] Finished smallmover_resselector in 36 seconds [~ 572 test (71.3216957605985%) started, 230 in queue, 11 running] Running Test symmetric_docking ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symmetric_docking/command.sh Running Test swm_protein_CCDmove ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_protein_CCDmove/command.sh Finished favor_native_residue in 90 seconds [~ 574 test (71.57107231920199%) started, 228 in queue, 12 running] Running Test swa_rna_gagu_23_append_and_kic_close ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_23_append_and_kic_close/command.sh Finished rama_mutation_selector in 37 seconds [~ 575 test (71.69576059850374%) started, 227 in queue, 12 running] Running Test seed_ensemble_JD2_JI ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/seed_ensemble_JD2_JI/command.sh Finished repack_with_elec_dens in 44 seconds [~ 576 test (71.82044887780549%) started, 226 in queue, 12 running] Running Test rna_farfar_syn_chi_res ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_farfar_syn_chi_res/command.sh Finished mp_range_relax in 35 seconds [~ 577 test (71.94513715710723%) started, 225 in queue, 12 running] Running Test mf_fixbb_sc ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mf_fixbb_sc/command.sh Finished genkic_ramaprepro_sampling in 37 seconds [~ 578 test (72.06982543640898%) started, 224 in queue, 12 running] Running Test make_rot_lib ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_rot_lib/command.sh Finished UnsatSelector in 35 seconds [~ 579 test (72.19451371571073%) started, 223 in queue, 12 running] Running Test grid_scores_features ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/grid_scores_features/command.sh Finished ddG_scan in 43 seconds [~ 580 test (72.31920199501246%) started, 222 in queue, 12 running] Running Test density_denovo ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/density_denovo/command.sh Finished PeptideCyclizeMover in 39 seconds [~ 581 test (72.44389027431421%) started, 221 in queue, 12 running] Running Test carbohydrates ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/carbohydrates/command.sh Finished mf_fixbb_sc in 32 seconds [~ 582 test (72.56857855361596%) started, 220 in queue, 12 running] Running Test swa_rna_gagu_11_append_and_ccd_close ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_11_append_and_ccd_close/command.sh Finished swm_protein_CCDmove in 44 seconds [~ 583 test (72.6932668329177%) started, 219 in queue, 12 running] Running Test rna_denovo_base_pair_setup ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_base_pair_setup/command.sh Finished symmetric_docking in 50 seconds [~ 584 test (72.81795511221945%) started, 218 in queue, 12 running] Running Test mp_vis_emb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_vis_emb/command.sh Finished swa_rna_gagu_23_append_and_kic_close in 43 seconds [~ 585 test (72.9426433915212%) started, 217 in queue, 12 running] Running Test mp_score_jd2 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_score_jd2/command.sh Finished min_pack_min in 81 seconds [~ 586 test (73.06733167082294%) started, 216 in queue, 12 running] Running Test mp_mutate_repack ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_mutate_repack/command.sh Finished rna_farfar_syn_chi_res in 53 seconds [~ 587 test (73.19201995012469%) started, 215 in queue, 12 running] Running Test metal_setup ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/metal_setup/command.sh Finished grid_scores_features in 37 seconds [~ 588 test (73.31670822942644%) started, 214 in queue, 12 running] Running Test helix_from_sequence ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helix_from_sequence/command.sh Finished make_symmdef_file in 88 seconds [~ 589 test (73.44139650872818%) started, 213 in queue, 12 running] Running Test hbnet_use_input_rot ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbnet_use_input_rot/command.sh Finished mp_vis_emb in 17 seconds [~ 590 test (73.56608478802993%) started, 212 in queue, 12 running] Running Test classic_relax_1a19 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/classic_relax_1a19/command.sh Finished mp_score_jd2 in 16 seconds [~ 591 test (73.69077306733168%) started, 211 in queue, 12 running] Running Test buried_area_filter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/buried_area_filter/command.sh Finished density_denovo in 44 seconds [~ 592 test (73.81546134663341%) started, 210 in queue, 12 running] Running Test DARC_sampling_on_the_fly ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DARC_sampling_on_the_fly/command.sh Finished make_rot_lib in 58 seconds [~ 593 test (73.94014962593516%) started, 209 in queue, 12 running] Running Test DARC_make_ray_files ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DARC_make_ray_files/command.sh Finished mp_mutate_repack in 24 seconds [~ 594 test (74.06483790523691%) started, 208 in queue, 12 running] Running Test ConsensusLoopDesign ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ConsensusLoopDesign/command.sh Finished swa_rna_gagu_11_append_and_ccd_close in 39 seconds [~ 595 test (74.18952618453865%) started, 207 in queue, 12 running] Running Test write_mol_file ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/write_mol_file/command.sh Finished rna_denovo_base_pair_setup in 39 seconds [~ 596 test (74.3142144638404%) started, 206 in queue, 12 running] Running Test swa_rna_gagu_22_prepend_and_kic_close ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_22_prepend_and_kic_close/command.sh Finished DARC_make_ray_files in 15 seconds [~ 597 test (74.43890274314215%) started, 205 in queue, 12 running] Running Test swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide/command.sh Finished carbohydrates in 55 seconds [~ 598 test (74.56359102244389%) started, 204 in queue, 12 running] Running Test surface_docking ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/surface_docking/command.sh Finished DARC_sampling_on_the_fly in 20 seconds [~ 599 test (74.68827930174564%) started, 203 in queue, 12 running] Running Test stored_residue_subset ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/stored_residue_subset/command.sh Finished buried_area_filter in 31 seconds [~ 600 test (74.81296758104739%) started, 202 in queue, 12 running] Running Test rosetta_scripts_hbond_options ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosetta_scripts_hbond_options/command.sh Finished metal_setup in 35 seconds [~ 601 test (74.93765586034912%) started, 201 in queue, 12 running] Running Test resource_database_locator ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/resource_database_locator/command.sh Finished helix_from_sequence in 37 seconds [~ 602 test (75.06234413965088%) started, 200 in queue, 12 running] Running Test loop_creation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/loop_creation/command.sh Finished write_mol_file in 37 seconds [~ 603 test (75.18703241895261%) started, 199 in queue, 12 running] Running Test longest_continuous_polar_segment_filter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/longest_continuous_polar_segment_filter/command.sh Finished ConsensusLoopDesign in 39 seconds [~ 604 test (75.31172069825436%) started, 198 in queue, 12 running] Running Test jscore ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jscore/command.sh Finished classic_relax_1a19 in 61 seconds [~ 605 test (75.43640897755611%) started, 197 in queue, 12 running] Finished swa_rna_gagu_22_prepend_and_kic_close in 44 seconds [~ 605 test (75.43640897755611%) started, 197 in queue, 11 running] Running Test genkic_dihedral_copying ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_dihedral_copying/command.sh Running Test density_refine_symm ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/density_refine_symm/command.sh Finished stored_residue_subset in 35 seconds [~ 607 test (75.6857855361596%) started, 195 in queue, 12 running] Running Test database_session_resource ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/database_session_resource/command.sh Finished surface_docking in 41 seconds [~ 608 test (75.81047381546135%) started, 194 in queue, 12 running] Running Test copy_rotamer_mover ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/copy_rotamer_mover/command.sh Finished hbnet_use_input_rot in 68 seconds [~ 609 test (75.93516209476309%) started, 193 in queue, 12 running] Running Test cluster ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cluster/command.sh Finished resource_database_locator in 37 seconds [~ 610 test (76.05985037406484%) started, 192 in queue, 12 running] Running Test broker_membrane ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/broker_membrane/command.sh Finished swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide in 45 seconds [~ 611 test (76.18453865336659%) started, 191 in queue, 12 running] Finished rosetta_scripts_hbond_options in 40 seconds [~ 611 test (76.18453865336659%) started, 191 in queue, 11 running] Running Test InterfaceDdG ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceDdG/command.sh Running Test zinc_homodimer_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/zinc_homodimer_design/command.sh Finished loop_creation in 38 seconds [~ 613 test (76.43391521197007%) started, 189 in queue, 12 running] Running Test test_computed_saxs_spectrum ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/test_computed_saxs_spectrum/command.sh Finished jscore in 22 seconds [~ 614 test (76.55860349127182%) started, 188 in queue, 12 running] Running Test symmetry_data_resource ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symmetry_data_resource/command.sh Finished longest_continuous_polar_segment_filter in 31 seconds [~ 615 test (76.68329177057356%) started, 187 in queue, 12 running] Running Test mp_transform_optimize ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_transform_optimize/command.sh Finished cluster in 16 seconds [~ 616 test (76.80798004987531%) started, 186 in queue, 12 running] Running Test make_and_perturb_bundle_multirepeat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_and_perturb_bundle_multirepeat/command.sh Finished genkic_dihedral_copying in 34 seconds [~ 617 test (76.93266832917706%) started, 185 in queue, 12 running] Running Test gen_apo_grids ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/gen_apo_grids/command.sh Finished copy_rotamer_mover in 30 seconds [~ 618 test (77.0573566084788%) started, 184 in queue, 12 running] Running Test cluster_filter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cluster_filter/command.sh Finished broker_membrane in 30 seconds [~ 619 test (77.18204488778055%) started, 183 in queue, 12 running] Running Test binselector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/binselector/command.sh Finished database_session_resource in 37 seconds [~ 620 test (77.3067331670823%) started, 182 in queue, 12 running] Running Test abinitio ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/abinitio/command.sh Finished seed_ensemble_JD2_JI in 161 seconds [~ 621 test (77.43142144638404%) started, 181 in queue, 12 running] Running Test UBQ_E2_thioester_two_ubiquitins ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/UBQ_E2_thioester_two_ubiquitins/command.sh Finished density_refine_symm in 44 seconds [~ 622 test (77.55610972568579%) started, 180 in queue, 12 running] Running Test StrandHelixGeometryFilter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/StrandHelixGeometryFilter/command.sh Finished InterfaceDdG in 38 seconds [~ 623 test (77.68079800498754%) started, 179 in queue, 12 running] Running Test StrandCurvatureByLevels ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/StrandCurvatureByLevels/command.sh Finished cluster_filter in 14 seconds [~ 624 test (77.80548628428927%) started, 178 in queue, 12 running] Running Test HelixBendFilter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/HelixBendFilter/command.sh Finished mp_transform_optimize in 30 seconds [~ 625 test (77.93017456359102%) started, 177 in queue, 12 running] Running Test zinc_homodimer_setup ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/zinc_homodimer_setup/command.sh Finished symmetry_data_resource in 37 seconds [~ 626 test (78.05486284289277%) started, 176 in queue, 12 running] Running Test swa_rna_gagu_14_combine_long_loop_filtering ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_14_combine_long_loop_filtering/command.sh Finished make_and_perturb_bundle_multirepeat in 31 seconds [~ 627 test (78.17955112219451%) started, 175 in queue, 12 running] Running Test swa_rna_gagu_12_helix_addition ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_12_helix_addition/command.sh Finished test_computed_saxs_spectrum in 44 seconds [~ 628 test (78.30423940149626%) started, 174 in queue, 12 running] Running Test set_torsion ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/set_torsion/command.sh Finished swa_rna_gagu_14_combine_long_loop_filtering in 6 seconds [~ 629 test (78.42892768079801%) started, 173 in queue, 12 running] Running Test rna_puzzle6_U75G76A77_on_thread1 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_puzzle6_U75G76A77_on_thread1/command.sh Finished gen_apo_grids in 29 seconds [~ 630 test (78.55361596009975%) started, 172 in queue, 12 running] Running Test referencepose_mutateresidue ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/referencepose_mutateresidue/command.sh Finished zinc_homodimer_design in 58 seconds [~ 631 test (78.6783042394015%) started, 171 in queue, 12 running] Running Test recces_turner ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/recces_turner/command.sh Finished binselector in 30 seconds [~ 632 test (78.80299251870325%) started, 170 in queue, 12 running] Running Test pocket_measure ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pocket_measure/command.sh Finished abinitio in 40 seconds [~ 633 test (78.92768079800499%) started, 169 in queue, 12 running] Running Test phiselector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/phiselector/command.sh Finished StrandHelixGeometryFilter in 36 seconds [~ 634 test (79.05236907730674%) started, 168 in queue, 12 running] Running Test ncaa_fixbb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ncaa_fixbb/command.sh Finished zinc_homodimer_setup in 29 seconds [~ 635 test (79.17705735660847%) started, 167 in queue, 12 running] Running Test mp_dock_setup ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_dock_setup/command.sh Finished StrandCurvatureByLevels in 37 seconds [~ 636 test (79.30174563591022%) started, 166 in queue, 12 running] Running Test helical_bundle ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle/command.sh Finished HelixBendFilter in 36 seconds [~ 637 test (79.42643391521197%) started, 165 in queue, 12 running] Running Test genkic_bin_setting ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_bin_setting/command.sh Finished set_torsion in 30 seconds [~ 638 test (79.55112219451371%) started, 164 in queue, 12 running] Running Test features_pdb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features_pdb/command.sh Finished swa_rna_gagu_12_helix_addition in 36 seconds [~ 639 test (79.67581047381546%) started, 163 in queue, 12 running] Running Test cst_info ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cst_info/command.sh Finished rna_puzzle6_U75G76A77_on_thread1 in 34 seconds [~ 640 test (79.80049875311721%) started, 162 in queue, 12 running] Running Test binselector_probins ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/binselector_probins/command.sh Finished pocket_measure in 24 seconds [~ 641 test (79.92518703241895%) started, 161 in queue, 12 running] Running Test backbonegridsampler ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backbonegridsampler/command.sh Finished referencepose_mutateresidue in 31 seconds [~ 642 test (80.0498753117207%) started, 160 in queue, 12 running] Running Test add_job_pair_data ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/add_job_pair_data/command.sh Finished recces_turner in 38 seconds [~ 643 test (80.17456359102245%) started, 159 in queue, 12 running] Running Test SecondaryStructureFilter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/SecondaryStructureFilter/command.sh Finished phiselector in 31 seconds [~ 644 test (80.29925187032418%) started, 158 in queue, 12 running] Running Test OversaturatedHbondAcceptorFilter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/OversaturatedHbondAcceptorFilter/command.sh Finished mp_dock_setup in 29 seconds [~ 645 test (80.42394014962593%) started, 157 in queue, 12 running] Running Test MutateResidue_selector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/MutateResidue_selector/command.sh Finished UBQ_E2_thioester_two_ubiquitins in 70 seconds [~ 646 test (80.54862842892769%) started, 156 in queue, 12 running] Running Test LoopLengthChange ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/LoopLengthChange/command.sh Finished helical_bundle in 32 seconds [~ 647 test (80.67331670822942%) started, 155 in queue, 12 running] Running Test InterfaceAnalyzer_resfile ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_resfile/command.sh Finished genkic_bin_setting in 32 seconds [~ 648 test (80.79800498753117%) started, 154 in queue, 12 running] Running Test InterfaceAnalyzer_bothpack ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_bothpack/command.sh Finished binselector_probins in 32 seconds [~ 649 test (80.92269326683292%) started, 153 in queue, 12 running] Running Test FilterReportAsPoseExtraScoresMover ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/FilterReportAsPoseExtraScoresMover/command.sh Finished backbonegridsampler in 31 seconds [~ 650 test (81.04738154613466%) started, 152 in queue, 12 running] Running Test unfolded_state_energy_calc ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/unfolded_state_energy_calc/command.sh Finished features_pdb in 39 seconds [~ 651 test (81.17206982543641%) started, 151 in queue, 12 running] Running Test real_virt_mover ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/real_virt_mover/command.sh Finished cst_info in 38 seconds [~ 652 test (81.29675810473816%) started, 150 in queue, 12 running] Running Test pwsho ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pwsho/command.sh Finished add_job_pair_data in 36 seconds [~ 653 test (81.4214463840399%) started, 149 in queue, 12 running] Running Test mp_interface_statistics ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_interface_statistics/command.sh Finished SecondaryStructureFilter in 37 seconds [~ 654 test (81.54613466334165%) started, 148 in queue, 12 running] Running Test mp_dock_prepack ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_dock_prepack/command.sh Finished OversaturatedHbondAcceptorFilter in 36 seconds [~ 655 test (81.6708229426434%) started, 147 in queue, 12 running] Running Test hbondstoresidue_selector ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbondstoresidue_selector/command.sh Finished mp_interface_statistics in 16 seconds [~ 656 test (81.79551122194513%) started, 146 in queue, 12 running] Running Test genkic_bin_sampling ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_bin_sampling/command.sh Finished MutateResidue_selector in 36 seconds [~ 657 test (81.92019950124688%) started, 145 in queue, 12 running] Running Test PeptideStubMover_prependRepeat ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/PeptideStubMover_prependRepeat/command.sh Finished InterfaceAnalyzer_resfile in 31 seconds [~ 658 test (82.04488778054863%) started, 144 in queue, 12 running] Running Test ModifyVariantTypeMover ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ModifyVariantTypeMover/command.sh Finished LoopLengthChange in 35 seconds [~ 659 test (82.16957605985037%) started, 143 in queue, 12 running] Running Test InterfaceAnalyzer_prepack ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_prepack/command.sh Finished InterfaceAnalyzer_bothpack in 31 seconds [~ 660 test (82.29426433915212%) started, 142 in queue, 12 running] Running Test FlipChirality ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/FlipChirality/command.sh Finished pwsho in 23 seconds [~ 661 test (82.41895261845387%) started, 141 in queue, 12 running] Running Test AddConstraintsToCurrentConformationMover ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/AddConstraintsToCurrentConformationMover/command.sh Finished unfolded_state_energy_calc in 26 seconds [~ 662 test (82.54364089775561%) started, 140 in queue, 12 running] Running Test vancomycin ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/vancomycin/command.sh Finished mp_dock_prepack in 17 seconds [~ 663 test (82.66832917705736%) started, 139 in queue, 12 running] Running Test swa_rna_gagu_03_append_to_silent ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_03_append_to_silent/command.sh Finished FilterReportAsPoseExtraScoresMover in 35 seconds [~ 664 test (82.7930174563591%) started, 138 in queue, 12 running] Running Test silent2frag ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/silent2frag/command.sh Finished real_virt_mover in 37 seconds [~ 665 test (82.91770573566085%) started, 137 in queue, 12 running] Running Test rb_recces ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rb_recces/command.sh Finished silent2frag in 8 seconds [~ 666 test (83.0423940149626%) started, 136 in queue, 12 running] Running Test mpi_multistate_design ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpi_multistate_design/command.sh Finished InterfaceAnalyzer_prepack in 27 seconds [~ 667 test (83.16708229426433%) started, 135 in queue, 12 running] Running Test assemble_domains_jd2 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/assemble_domains_jd2/command.sh Finished hbondstoresidue_selector in 30 seconds [~ 668 test (83.29177057356608%) started, 134 in queue, 12 running] Running Test antibody_numbering_converter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_numbering_converter/command.sh Finished genkic_bin_sampling in 31 seconds [~ 669 test (83.41645885286783%) started, 133 in queue, 12 running] Running Test site_constraint ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/site_constraint/command.sh Finished ModifyVariantTypeMover in 31 seconds [~ 670 test (83.54114713216957%) started, 132 in queue, 12 running] Running Test rna_farfar_noncanonical_hairpin ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_farfar_noncanonical_hairpin/command.sh Finished PeptideStubMover_prependRepeat in 36 seconds [~ 671 test (83.66583541147132%) started, 131 in queue, 12 running] Running Test r_pdb2top ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/r_pdb2top/command.sh Finished swa_rna_gagu_03_append_to_silent in 26 seconds [~ 672 test (83.79052369077307%) started, 130 in queue, 12 running] Running Test pepspec_anchor_dock ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pepspec_anchor_dock/command.sh Finished FlipChirality in 36 seconds [~ 673 test (83.91521197007481%) started, 129 in queue, 12 running] Finished AddConstraintsToCurrentConformationMover in 36 seconds [~ 673 test (83.91521197007481%) started, 129 in queue, 11 running] Running Test identify_cdr_clusters ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/identify_cdr_clusters/command.sh Running Test fragment_picker ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fragment_picker/command.sh Finished site_constraint in 10 seconds [~ 675 test (84.16458852867831%) started, 127 in queue, 12 running] Running Test phosphonate ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/phosphonate/command.sh Finished r_pdb2top in 7 seconds [~ 676 test (84.28927680798004%) started, 126 in queue, 12 running] Running Test metalloprotein_broker ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/metalloprotein_broker/command.sh Finished rb_recces in 30 seconds [~ 677 test (84.4139650872818%) started, 125 in queue, 12 running] Running Test include_cc_check ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/include_cc_check/command.sh >>> Illegal use of .cc file in an include statement detected! Encounter error while executing: ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/include_cc_check/command.sh *** Test include_cc_check did not run! Check your --mode flag and paths. [2024-09-18 22:46:48.392828] Finished include_cc_check in 0 seconds [~ 678 test (84.53865336658355%) started, 124 in queue, 12 running] Running Test docking_prepack ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_prepack/command.sh Finished antibody_numbering_converter in 21 seconds [~ 679 test (84.66334164588528%) started, 123 in queue, 12 running] Running Test InterfaceAnalyzer_tracer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_tracer/command.sh Finished vancomycin in 48 seconds [~ 680 test (84.78802992518703%) started, 122 in queue, 12 running] Running Test InterfaceAnalyzer_allscores ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_allscores/command.sh Finished assemble_domains_jd2 in 27 seconds [~ 681 test (84.91271820448878%) started, 121 in queue, 12 running] Running Test InterfaceAnalyzer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer/command.sh Finished mpi_multistate_design in 34 seconds [~ 682 test (85.03740648379052%) started, 120 in queue, 12 running] Finished fragment_picker in 16 seconds [~ 682 test (85.03740648379052%) started, 120 in queue, 11 running] Running Test swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump/command.sh Running Test swa_rna_gagu_17_append_floating_base ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_17_append_floating_base/command.sh Finished metalloprotein_broker in 13 seconds [~ 684 test (85.28678304239402%) started, 118 in queue, 12 running] Running Test swa_rna_gagu_08_append_dinucleotide ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_08_append_dinucleotide/command.sh Finished ncaa_fixbb in 125 seconds [~ 685 test (85.41147132169576%) started, 117 in queue, 12 running] Running Test swa_rna_gagu_06_append_to_3primeterminus ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_06_append_to_3primeterminus/command.sh Finished identify_cdr_clusters in 21 seconds [~ 686 test (85.53615960099751%) started, 116 in queue, 12 running] Running Test swa_rna_gagu_05_prepend_to_5primeterminus ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_05_prepend_to_5primeterminus/command.sh Finished phosphonate in 19 seconds [~ 687 test (85.66084788029926%) started, 115 in queue, 12 running] Running Test swa_rna_gagu_02_prepend ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_02_prepend/command.sh Finished pepspec_anchor_dock in 23 seconds [~ 688 test (85.785536159601%) started, 114 in queue, 12 running] Running Test swa_rna_gagu_01_append ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_01_append/command.sh Finished InterfaceAnalyzer_tracer in 22 seconds [~ 689 test (85.91022443890274%) started, 113 in queue, 12 running] Running Test struc_set_fragment_picker ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/struc_set_fragment_picker/command.sh Finished InterfaceAnalyzer_allscores in 23 seconds [~ 690 test (86.0349127182045%) started, 112 in queue, 12 running] Finished swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump in 19 seconds [~ 690 test (86.0349127182045%) started, 112 in queue, 11 running] Running Test rna_helix ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_helix/command.sh Running Test rna_denovo_grid_vdw ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_grid_vdw/command.sh Finished swa_rna_gagu_08_append_dinucleotide in 19 seconds [~ 692 test (86.28428927680798%) started, 110 in queue, 12 running] Running Test hotspot_stub_constraints ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hotspot_stub_constraints/command.sh Finished swa_rna_gagu_06_append_to_3primeterminus in 20 seconds [~ 693 test (86.40897755610973%) started, 109 in queue, 12 running] Running Test glycan_clash_check ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycan_clash_check/command.sh Finished swa_rna_gagu_17_append_floating_base in 23 seconds [~ 694 test (86.53366583541147%) started, 108 in queue, 12 running] Running Test geometric_solvation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/geometric_solvation/command.sh Finished docking_prepack in 31 seconds [~ 695 test (86.65835411471322%) started, 107 in queue, 12 running] Running Test ProQ ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ProQ/command.sh Finished swa_rna_gagu_05_prepend_to_5primeterminus in 19 seconds [~ 696 test (86.78304239401496%) started, 106 in queue, 12 running] Running Test swm_rna_move_align_dock ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_move_align_dock/command.sh Finished swa_rna_gagu_02_prepend in 20 seconds [~ 697 test (86.9077306733167%) started, 105 in queue, 12 running] Running Test swa_rna_gagu_20_append_floating_base_by_jump ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_20_append_floating_base_by_jump/command.sh Finished swa_rna_gagu_01_append in 20 seconds [~ 698 test (87.03241895261846%) started, 104 in queue, 12 running] Running Test swa_rna_gagu_19_prepend_floating_base_by_jump ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_19_prepend_floating_base_by_jump/command.sh Finished struc_set_fragment_picker in 17 seconds [~ 699 test (87.1571072319202%) started, 103 in queue, 12 running] Running Test swa_rna_gagu_07_prepend_dinucleotide ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_07_prepend_dinucleotide/command.sh Finished glycan_clash_check in 14 seconds [~ 700 test (87.28179551122194%) started, 102 in queue, 12 running] Running Test sequence_tolerance ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sequence_tolerance/command.sh Finished rna_denovo_grid_vdw in 18 seconds [~ 701 test (87.4064837905237%) started, 101 in queue, 12 running] Running Test score_jd2 ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/score_jd2/command.sh Finished geometric_solvation in 16 seconds [~ 702 test (87.53117206982543%) started, 100 in queue, 12 running] Running Test orbitals ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/orbitals/command.sh Finished hotspot_stub_constraints in 21 seconds [~ 703 test (87.65586034912718%) started, 99 in queue, 12 running] Running Test mp_transform ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_transform/command.sh Finished ProQ in 17 seconds [~ 704 test (87.78054862842893%) started, 98 in queue, 12 running] Running Test fragmentpicker_integration_demo ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fragmentpicker_integration_demo/command.sh Finished rna_helix in 23 seconds [~ 705 test (87.90523690773067%) started, 97 in queue, 12 running] Running Test fold_and_dock ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fold_and_dock/command.sh Finished swa_rna_gagu_20_append_floating_base_by_jump in 19 seconds [~ 706 test (88.02992518703242%) started, 96 in queue, 12 running] Running Test extract_atomtree_diffs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/extract_atomtree_diffs/command.sh Finished swa_rna_gagu_19_prepend_floating_base_by_jump in 19 seconds [~ 707 test (88.15461346633417%) started, 95 in queue, 12 running] Running Test docking_low_res ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_low_res/command.sh Finished swm_rna_move_align_dock in 24 seconds [~ 708 test (88.2793017456359%) started, 94 in queue, 12 running] Running Test swm_protein_preminimize ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_protein_preminimize/command.sh Finished swa_rna_gagu_07_prepend_dinucleotide in 19 seconds [~ 709 test (88.40399002493766%) started, 93 in queue, 12 running] Running Test swm_protein_from_scratch ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_protein_from_scratch/command.sh Finished fragmentpicker_integration_demo in 12 seconds [~ 710 test (88.5286783042394%) started, 92 in queue, 12 running] Running Test swa_rna_loop_clusterer ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_loop_clusterer/command.sh Finished mp_transform in 14 seconds [~ 711 test (88.65336658354114%) started, 91 in queue, 12 running] Running Test shobuns ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/shobuns/command.sh Finished sequence_tolerance in 21 seconds [~ 712 test (88.7780548628429%) started, 90 in queue, 12 running] Running Test rna_ribosome_tether ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_ribosome_tether/command.sh Finished fold_and_dock in 14 seconds [~ 713 test (88.90274314214464%) started, 89 in queue, 12 running] Running Test rna_minimize ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_minimize/command.sh Finished swa_rna_loop_clusterer in 5 seconds [~ 714 test (89.02743142144638%) started, 88 in queue, 12 running] Running Test rna_denovo_bps_helix_ends ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_bps_helix_ends/command.sh Finished orbitals in 22 seconds [~ 715 test (89.15211970074813%) started, 87 in queue, 12 running] Running Test rna_denovo_bps_fixed_ends ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_bps_fixed_ends/command.sh Finished extract_atomtree_diffs in 17 seconds [~ 716 test (89.27680798004988%) started, 86 in queue, 12 running] Running Test pna ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pna/command.sh Finished rna_farfar_noncanonical_hairpin in 88 seconds [~ 717 test (89.40149625935162%) started, 85 in queue, 12 running] Running Test per_residue_energies ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/per_residue_energies/command.sh Finished swm_protein_preminimize in 16 seconds [~ 718 test (89.52618453865337%) started, 84 in queue, 12 running] Running Test match_1c2t ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/match_1c2t/command.sh Finished InterfaceAnalyzer in 67 seconds [~ 719 test (89.65087281795512%) started, 83 in queue, 12 running] Running Test jrelax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jrelax/command.sh Finished score_jd2 in 28 seconds [~ 720 test (89.77556109725685%) started, 82 in queue, 12 running] Running Test ig_dump ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ig_dump/command.sh Finished docking_low_res in 23 seconds [~ 721 test (89.9002493765586%) started, 81 in queue, 12 running] Running Test erraser_minimize ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/erraser_minimize/command.sh Finished shobuns in 15 seconds [~ 722 test (90.02493765586036%) started, 80 in queue, 12 running] Running Test density_tools ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/density_tools/command.sh Finished rna_ribosome_tether in 15 seconds [~ 723 test (90.14962593516209%) started, 79 in queue, 12 running] Running Test database_jd2_io ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/database_jd2_io/command.sh Finished rna_denovo_bps_helix_ends in 13 seconds [~ 724 test (90.27431421446384%) started, 78 in queue, 12 running] Running Test database_jd2_compact_io ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/database_jd2_compact_io/command.sh Finished rna_denovo_bps_fixed_ends in 14 seconds [~ 725 test (90.39900249376558%) started, 77 in queue, 12 running] Running Test c-term_conjugation ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/c-term_conjugation/command.sh Finished per_residue_energies in 16 seconds [~ 726 test (90.52369077306733%) started, 76 in queue, 12 running] Running Test angle_recovery_stats ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/angle_recovery_stats/command.sh Finished swm_protein_from_scratch in 26 seconds [~ 727 test (90.64837905236908%) started, 75 in queue, 12 running] Running Test swa_rna_loop_sampler ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_loop_sampler/command.sh Finished jrelax in 15 seconds [~ 728 test (90.77306733167082%) started, 74 in queue, 12 running] Running Test mg_modeler ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mg_modeler/command.sh Finished ig_dump in 16 seconds [~ 729 test (90.89775561097257%) started, 73 in queue, 12 running] Running Test gen_lig_grids ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/gen_lig_grids/command.sh Finished rna_minimize in 25 seconds [~ 730 test (91.02244389027432%) started, 72 in queue, 12 running] Finished match_1c2t in 18 seconds [~ 730 test (91.02244389027432%) started, 72 in queue, 11 running] Running Test distances ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/distances/command.sh Running Test cs_rosetta_rna ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cs_rosetta_rna/command.sh grep: full_minimize_temp_1.out: No such file or directory Finished erraser_minimize in 15 seconds [~ 732 test (91.2718204488778%) started, 70 in queue, 12 running] Running Test swm_rna_move_two_strands ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_move_two_strands/command.sh Finished angle_recovery_stats in 6 seconds [~ 733 test (91.39650872817955%) started, 69 in queue, 12 running] Running Test super_aln ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/super_aln/command.sh Finished density_tools in 16 seconds [~ 734 test (91.52119700748129%) started, 68 in queue, 12 running] Running Test rotamer_recovery_compare_two_structures ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rotamer_recovery_compare_two_structures/command.sh Finished c-term_conjugation in 12 seconds [~ 735 test (91.64588528678304%) started, 67 in queue, 12 running] Running Test pH_mode ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pH_mode/command.sh Finished super_aln in 7 seconds [~ 736 test (91.77057356608479%) started, 66 in queue, 12 running] Running Test header_using_check ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/header_using_check/command.sh Finished header_using_check in 0 seconds [~ 737 test (91.89526184538653%) started, 65 in queue, 12 running] Running Test fix_alignment_to_match_pdb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fix_alignment_to_match_pdb/command.sh Finished swa_rna_loop_sampler in 15 seconds [~ 738 test (92.01995012468828%) started, 64 in queue, 12 running] Running Test docking_local_refine_min ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_local_refine_min/command.sh Finished cs_rosetta_rna in 14 seconds [~ 739 test (92.14463840399003%) started, 63 in queue, 12 running] Running Test sweep_respair_energies ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sweep_respair_energies/command.sh Finished gen_lig_grids in 16 seconds [~ 740 test (92.26932668329177%) started, 62 in queue, 12 running] Running Test swa_rna_gagu_04_clustering ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_04_clustering/command.sh Finished distances in 15 seconds [~ 741 test (92.39401496259352%) started, 61 in queue, 12 running] Running Test select_best_unique_ligand_poses ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/select_best_unique_ligand_poses/command.sh Finished mg_modeler in 17 seconds [~ 742 test (92.51870324189527%) started, 60 in queue, 12 running] Finished swm_rna_move_two_strands in 14 seconds [~ 742 test (92.51870324189527%) started, 60 in queue, 11 running] Running Test pocket_suggest_targets ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pocket_suggest_targets/command.sh Running Test mp_loadtime ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_loadtime/command.sh Finished pH_mode in 12 seconds [~ 744 test (92.76807980049875%) started, 58 in queue, 12 running] Running Test mg_modeler_lores ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mg_modeler_lores/command.sh Finished database_jd2_io in 29 seconds [~ 745 test (92.8927680798005%) started, 57 in queue, 12 running] Running Test measure_lcaa_radii ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/measure_lcaa_radii/command.sh Finished rotamer_recovery_compare_two_structures in 14 seconds [~ 746 test (93.01745635910224%) started, 56 in queue, 12 running] Running Test contactMap ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/contactMap/command.sh Finished database_jd2_compact_io in 29 seconds [~ 747 test (93.14214463840399%) started, 55 in queue, 12 running] Running Test constel ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/constel/command.sh Finished swa_rna_gagu_04_clustering in 5 seconds [~ 748 test (93.26683291770574%) started, 54 in queue, 12 running] Running Test buried_unsat_kinemage ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/buried_unsat_kinemage/command.sh Finished select_best_unique_ligand_poses in 7 seconds [~ 749 test (93.39152119700748%) started, 53 in queue, 12 running] Running Test RescorePDDF ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/RescorePDDF/command.sh Finished sweep_respair_energies in 9 seconds [~ 750 test (93.51620947630923%) started, 52 in queue, 12 running] Running Test template_features ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/template_features/command.sh Finished mp_loadtime in 8 seconds [~ 751 test (93.64089775561098%) started, 51 in queue, 12 running] Running Test noe_assignment ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/noe_assignment/command.sh Finished fix_alignment_to_match_pdb in 15 seconds [~ 752 test (93.76558603491272%) started, 50 in queue, 12 running] Running Test motif_extraction ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/motif_extraction/command.sh Finished contactMap in 7 seconds [~ 753 test (93.89027431421447%) started, 49 in queue, 12 running] Running Test cstfile_to_theozyme_pdb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cstfile_to_theozyme_pdb/command.sh Finished docking_local_refine_min in 17 seconds [~ 754 test (94.01496259351622%) started, 48 in queue, 12 running] Running Test rna_screen_phosphates ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_screen_phosphates/command.sh Finished pocket_suggest_targets in 15 seconds [~ 755 test (94.13965087281795%) started, 47 in queue, 12 running] Running Test rna_score ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_score/command.sh Finished template_features in 6 seconds [~ 756 test (94.2643391521197%) started, 46 in queue, 12 running] Running Test nucleobase_sample_around ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/nucleobase_sample_around/command.sh Finished mg_modeler_lores in 15 seconds [~ 757 test (94.38902743142144%) started, 45 in queue, 12 running] Running Test fit_helixparams_rms ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fit_helixparams_rms/command.sh Finished cstfile_to_theozyme_pdb in 7 seconds [~ 758 test (94.51371571072319%) started, 44 in queue, 12 running] Running Test cluster_calibur ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cluster_calibur/command.sh Calibur clustering has been broken since its inception. The external version was never successfully integration tested because of typos in the integration test. The version ported to Rosetta has never worked either. Since now it causes hard-failures on release_debug, it needs to be deactivated for now. Finished cluster_calibur in 0 seconds [~ 759 test (94.63840399002494%) started, 43 in queue, 12 running] Running Test DARC_shapeonly ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DARC_shapeonly/command.sh Finished measure_lcaa_radii in 16 seconds [~ 760 test (94.76309226932668%) started, 42 in queue, 12 running] Running Test test_idealize ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/test_idealize/command.sh Finished RescorePDDF in 12 seconds [~ 761 test (94.88778054862843%) started, 41 in queue, 12 running] Running Test rna_minimize_6D_loop_close ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_minimize_6D_loop_close/command.sh Finished constel in 16 seconds [~ 762 test (95.01246882793018%) started, 40 in queue, 12 running] Running Test report_hbonds_for_plugin ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/report_hbonds_for_plugin/command.sh Finished motif_extraction in 9 seconds [~ 763 test (95.13715710723191%) started, 39 in queue, 12 running] Running Test per_residue_sc_sasa ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/per_residue_sc_sasa/command.sh Finished noe_assignment in 11 seconds [~ 764 test (95.26184538653366%) started, 38 in queue, 12 running] Running Test oop_create ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/oop_create/command.sh Finished buried_unsat_kinemage in 15 seconds [~ 765 test (95.38653366583542%) started, 37 in queue, 12 running] Running Test minimize_6Dloopclose ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/minimize_6Dloopclose/command.sh Finished rna_screen_phosphates in 10 seconds [~ 766 test (95.51122194513715%) started, 36 in queue, 12 running] Running Test ld_converter ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ld_converter/command.sh Finished DARC_shapeonly in 7 seconds [~ 767 test (95.6359102244389%) started, 35 in queue, 12 running] Running Test features_database_schema ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features_database_schema/command.sh Finished rna_minimize_6D_loop_close in 5 seconds [~ 768 test (95.76059850374065%) started, 34 in queue, 12 running] Running Test centroid_disulfide_scores ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/centroid_disulfide_scores/command.sh Finished report_hbonds_for_plugin in 6 seconds [~ 769 test (95.88528678304239%) started, 33 in queue, 12 running] Running Test DARC_electrostatics ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DARC_electrostatics/command.sh Finished nucleobase_sample_around in 10 seconds [~ 770 test (96.00997506234414%) started, 32 in queue, 12 running] Running Test rna_suitename ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_suitename/command.sh Finished per_residue_sc_sasa in 6 seconds [~ 771 test (96.13466334164589%) started, 31 in queue, 12 running] Running Test rna_add_WC_stats ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_add_WC_stats/command.sh Finished minimize_6Dloopclose in 5 seconds [~ 772 test (96.25935162094763%) started, 30 in queue, 12 running] Running Test rings ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rings/command.sh Finished test_idealize in 7 seconds [~ 773 test (96.38403990024938%) started, 29 in queue, 12 running] Running Test ralford_dump_rotamers ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ralford_dump_rotamers/command.sh Finished fit_helixparams_rms in 9 seconds [~ 774 test (96.50872817955113%) started, 28 in queue, 12 running] Running Test mp_span_from_pdb ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_span_from_pdb/command.sh Finished oop_create in 9 seconds [~ 775 test (96.63341645885286%) started, 27 in queue, 12 running] Running Test make_exemplar ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_exemplar/command.sh Finished rna_score in 14 seconds [~ 776 test (96.75810473815461%) started, 26 in queue, 12 running] Running Test loop_hash ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/loop_hash/command.sh Finished mp_span_from_pdb in 3 seconds [~ 777 test (96.88279301745636%) started, 25 in queue, 12 running] Running Test fit_helixparams_a3b ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fit_helixparams_a3b/command.sh Finished rna_suitename in 5 seconds [~ 778 test (97.0074812967581%) started, 24 in queue, 12 running] Finished rna_add_WC_stats in 5 seconds [~ 778 test (97.0074812967581%) started, 24 in queue, 11 running] Running Test code_template_tests_src ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/code_template_tests_src/command.sh Running Test calculate_sasa ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/calculate_sasa/command.sh Finished centroid_disulfide_scores in 6 seconds [~ 780 test (97.2568578553616%) started, 22 in queue, 12 running] Running Test CCD_loop_closure ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/CCD_loop_closure/command.sh Finished DARC_electrostatics in 6 seconds [~ 781 test (97.38154613466334%) started, 21 in queue, 12 running] Running Test test_d_l_readin ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/test_d_l_readin/command.sh Finished ralford_dump_rotamers in 5 seconds [~ 782 test (97.50623441396509%) started, 20 in queue, 12 running] Running Test rna_cluster ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_cluster/command.sh Finished loop_hash in 3 seconds [~ 783 test (97.63092269326684%) started, 19 in queue, 12 running] Running Test r_rmsf ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/r_rmsf/command.sh test_general test_abstract test_mover test_ws_energy_method test_1b_energy_method test_2b_energy_method test_task_operation test_features_reporter test_residue_selector test_residue_selector_in_core test_crosslinker_mover_helper test_util Finished ld_converter in 9 seconds [~ 784 test (97.75561097256858%) started, 18 in queue, 12 running] Finished code_template_tests_src in 2 seconds [~ 784 test (97.75561097256858%) started, 18 in queue, 11 running] Running Test number_of_residuetypes ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/number_of_residuetypes/command.sh Running Test non-canonical_connectivities ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/non-canonical_connectivities/command.sh Finished rings in 7 seconds [~ 786 test (98.00498753117208%) started, 16 in queue, 12 running] Running Test fit_helixparams ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fit_helixparams/command.sh Finished pna in 71 seconds [~ 787 test (98.12967581047381%) started, 15 in queue, 12 running] Running Test combine_silent ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/combine_silent/command.sh Finished fit_helixparams_a3b in 4 seconds [~ 788 test (98.25436408977556%) started, 14 in queue, 12 running] Running Test BuildPeptide ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/BuildPeptide/command.sh Finished calculate_sasa in 4 seconds [~ 789 test (98.3790523690773%) started, 13 in queue, 12 running] Running Test score_aln ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/score_aln/command.sh Finished combine_silent in 2 seconds [~ 790 test (98.50374064837905%) started, 12 in queue, 12 running] Finished score_aln in 0 seconds [~ 790 test (98.50374064837905%) started, 12 in queue, 11 running] Running Test rosetta_scripts_info ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosetta_scripts_info/command.sh Running Test mp_quick_relax ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_quick_relax/command.sh Finished mp_quick_relax in 0 seconds [~ 792 test (98.75311720698254%) started, 10 in queue, 12 running] Running Test hierarchical_clustering ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hierarchical_clustering/command.sh Finished test_d_l_readin in 5 seconds [~ 793 test (98.87780548628429%) started, 9 in queue, 12 running] Finished fit_helixparams in 3 seconds [~ 793 test (98.87780548628429%) started, 9 in queue, 11 running] Running Test features_scientific_benchmark ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features_scientific_benchmark/command.sh Running Test features_postgres ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features_postgres/command.sh Finished rna_cluster in 5 seconds [~ 795 test (99.12718204488777%) started, 7 in queue, 12 running] Finished features_scientific_benchmark in 0 seconds [~ 795 test (99.12718204488777%) started, 7 in queue, 11 running] Finished features_postgres in 0 seconds [~ 795 test (99.12718204488777%) started, 7 in queue, 10 running] Running Test extract_pdbs ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/extract_pdbs/command.sh Running Test crossaln ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crossaln/command.sh Running Test code_template_tests_unit ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/code_template_tests_unit/command.sh Finished hierarchical_clustering in 0 seconds [~ 798 test (99.50124688279301%) started, 4 in queue, 12 running] Finished code_template_tests_unit in 0 seconds [~ 798 test (99.50124688279301%) started, 4 in queue, 11 running] Running Test code_template_tests_app ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/code_template_tests_app/command.sh Running Test central_class_modification ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/central_class_modification/command.sh Finished central_class_modification in 0 seconds [~ 800 test (99.75062344139651%) started, 2 in queue, 12 running] Running Test Werror_check ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/Werror_check/command.sh Checking the status of the -Werror option in the Scons build settings: PASS Checking the status of the -Werror option in the CMake build settings: PASS Finished r_rmsf in 5 seconds [~ 801 test (99.87531172069825%) started, 1 in queue, 12 running] Finished extract_pdbs in 0 seconds [~ 801 test (99.87531172069825%) started, 1 in queue, 11 running] Finished crossaln in 0 seconds [~ 801 test (99.87531172069825%) started, 1 in queue, 10 running] Finished Werror_check in 0 seconds [~ 801 test (99.87531172069825%) started, 1 in queue, 9 running] Running Test RescoreSAXS ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/RescoreSAXS/command.sh Running Test HOW_TO_MAKE_TESTS ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/HOW_TO_MAKE_TESTS/command.sh Finished number_of_residuetypes in 4 seconds [~ 802 test (100.0%) started, 0 in queue, 9 running] Finished code_template_tests_app in 0 seconds [~ 802 test (100.0%) started, 0 in queue, 8 running] Finished RescoreSAXS in 0 seconds [~ 802 test (100.0%) started, 0 in queue, 7 running] Finished HOW_TO_MAKE_TESTS in 0 seconds [~ 802 test (100.0%) started, 0 in queue, 6 running] Finished features_database_schema in 14 seconds [~ 802 test (100.0%) started, 0 in queue, 5 running] Finished BuildPeptide in 4 seconds [~ 802 test (100.0%) started, 0 in queue, 4 running] Finished CCD_loop_closure in 7 seconds [~ 802 test (100.0%) started, 0 in queue, 3 running] Finished make_exemplar in 10 seconds [~ 802 test (100.0%) started, 0 in queue, 2 running] Finished non-canonical_connectivities in 11 seconds [~ 802 test (100.0%) started, 0 in queue, 1 running] Finished rosetta_scripts_info in 9 seconds [~ 802 test (100.0%) started, 0 in queue, 0 running] Skipping comparison/analysis phase because command line option "--skip-comparison" was specified... Missing new/runtimes.yaml ──────────────── 'hojo-2' comparing commits:20486 linux.clang.integration.release_debug_no_symbols test_id=837829 vs. main:62109 previous_test_id=827802 ──────────────── WARNING: Previous test results does not have `.execution.results.json` file, so comparison with None was performed instead! WARNING: This can often be fixed by merging with the latest `main`. WARNING: Overriding calculated test state `failed` → `failed`...
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AddConstraintsToCurrentConformationMover AlignPDBInfoToSequences AlterSpecDisruption AnchorFinder AnchoredDesign AnchoredPDBCreator BFactorSelector BuildPeptide CCD_loop_closure CCS_PARCS ConsensusLoopDesign ContactMolecularSurface DARC_electrostatics DARC_make_ray_files DARC_sampling_on_the_fly DARC_shapeonly DNA_methylation DumpTrajectoryEnergy DumpTrajectoryEnergy_packing Enzrevert_xml FavorSequenceProfileMover FilterReportAsPoseExtraScoresMover FlipChirality FloppyTail HDXEnergy HOW_TO_MAKE_TESTS HelixBendFilter InterfaceAnalyzer InterfaceAnalyzer_allscores InterfaceAnalyzer_bothpack InterfaceAnalyzer_ligand InterfaceAnalyzer_metrics InterfaceAnalyzer_prepack InterfaceAnalyzer_resfile InterfaceAnalyzer_tracer InterfaceDdG KIC_refine KIC_vicinity KIC_with_fragments LayerDesign LayerDesign_symm LayerSelector LoopAnalyzer LoopLengthChange ModifyVariantTypeMover MutateResidue_selector N-terminal_acetylation OversaturatedHbondAcceptorFilter PDB_diagnostic PTMPrediction PeptideCyclizeMover PeptideStubMover_prependRepeat PolarDesign2019 ProQ RBOut ReadResfile_with_selector RescorePDDF RescoreSAXS ResidueDisorder RunSimpleMetric_b_factor_test SID_ERMS_prediction SID_rescore SSElementSelector SecondaryStructureFilter SnugDock StrandCurvatureByLevels StrandHelixGeometryFilter ThreadingInputter TryDisulfPermutations UBQ_E2_thioester UBQ_E2_thioester_extra_bodies UBQ_E2_thioester_two_ubiquitins UBQ_Gp_CYD-CYD UBQ_Gp_LYX-Cterm UnsatSelector Werror_check abinitio abinitio_with_trRosetta add_constraints_to_current_conformation add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup add_job_pair_data ambiguous_nmr_distance_constraint angle_recovery_stats antibody_H3 antibody_H3_camelid antibody_cc antibody_designer antibody_designer_camelid antibody_designer_xml antibody_graft antibody_numbering_converter app_exception_handling assemble_domains_jd2 auto-drrafter_final_results auto-drrafter_setup_run_R1 auto-drrafter_setup_run_R2 auto-drrafter_setup_run_R3 autoNOE_rosetta autosetup_metals_centroid backbonegridsampler backbonegridsampler_multiresidue backbonegridsampler_nstruct_mode backrub backrub_interface_ddG backrub_pilot balancedKIC basic_gcn_tensorflow_test batch_relax bcl_fragment_mutate beta_strand_homodimer bin_initialization bin_perturbation binselector binselector_probins broker broker_membrane bundlegridsampler bundlegridsampler_composition_energy bundlegridsampler_composition_energy_fract_range bundlegridsampler_copy_pitch bundlegridsampler_design bundlegridsampler_design_nstruct_mode bundlegridsampler_epsilon bundlegridsampler_multirepeat bundlegridsampler_z0_offset bundlegridsampler_z1_offset bundlereporter_filter burial_measure_centroid buried_area_filter buried_unsat_kinemage buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm c-term_conjugation calculate_sasa carbohydrates cart_min_glycans cartesianddg case_sensitive_filenames ccd_ends_graft_mover_rs central_class_modification centroid_disulfide_scores centroid_from_fullatom cl_complex_rescore classic_relax_1a19 cleanAlignment cluster cluster_alns cluster_calibur cluster_filter cmaes_minimizer coarse_rna_scoring code_template_tests_app code_template_tests_citations code_template_tests_src code_template_tests_unit coenzymes combine_silent composition_energy_layers constel constraints_metric contactMap control_flow_rs copy_rotamer_mover count_cycpep_sequences coupled_moves crankshaft_flip create_clash-based_repack_shell create_sequence_motif crossaln crosslinkermover_1_4_bbmb_asymm crosslinkermover_1_4_bbmb_c2_symmetry crosslinkermover_1_4_bbmb_s2_symm crosslinkermover_lanthionine crosslinkermover_methyllanthionine crosslinkermover_octahedral crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal crosslinkermover_tetrahedral_metal_asp crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tetrahedral_metal_d2_symmetry crosslinkermover_thioether crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar crosslinkermover_trigonal_planar_c3_symm crosslinkermover_trigonal_pyramidal crosslinkermover_trigonal_pyramidal_c3_symm cs_rosetta_rna cst_info cstfile_to_theozyme_pdb custom_basetype_packer_palette cyclization cycpep_design_pipeline cycpep_rdkit_metric cycpep_rigid_body_permutation_mover cycpep_symmetry_filter d_workflow database_jd2_compact_io database_jd2_io database_md5 database_session_resource ddG_ensemble ddG_of_mutation ddG_scan ddG_sym dehydro_aa_patch density_denovo density_refine density_refine_symm density_tools design_glycans design_w_custom_palette-CAAs design_w_custom_palette-NCAAs design_w_custom_palette-RNA dgdp_aio dgdp_script dihedral_constraint_generator distances disulfidize_beta_cys dna_interface_design dock_glycans dock_with_hotspot_place_simultaneously docking_distance_constraints docking_ensemble docking_ensemble_prepack docking_full_protocol docking_local_refine docking_local_refine_min docking_low_res docking_prepack docking_site_constraints doug_dock_design_min_mod2_cal_cal drrafter_error_estimation drrafter_run drrafter_setup drrafter_setup_build_missing drrafter_setup_protein_dock drrafter_setup_real_test_H drrafter_setup_real_test_H_no_init drrafter_setup_ribosome_test drrafter_setup_simple duplicate_header_guards energy_based_clustering_alpha_aa energy_based_clustering_alpha_aa_bin_analysis energy_based_clustering_alpha_aa_dihedral energy_based_clustering_alpha_aa_scorefile entropy_correction enumerative_sampling enzdes enzscore_filter_dimetal enzscore_filter_dimetal_sym enzscore_filter_ligand enzscore_filter_metal enzscore_filter_metal_sym erraser_minimize esm_model_perplexity evolution exclusively_shared_jumps explicit_membrane extract_atomtree_diffs extract_pdbs farfar_mrna farnesyl fast_relax fast_relax_scripts favor_coupling_tensor favor_native_residue features features_database_schema features_parallel features_pdb features_pdb_mpi features_postgres features_scientific_benchmark fiber_diffraction fiber_diffraction_fad fit_helixparams fit_helixparams_a3b fit_helixparams_rms fix_alignment_to_match_pdb fixbb flexpepdock flexpepdock_abinitio fold_and_dock fold_cst_new fold_from_loops fragment_picker fragmentpicker_integration_demo fuzzy ga_ligand_dock ga_ligand_dock_amino_acid ga_ligand_dock_macrocycle gen_apo_grids gen_lig_grids generate_6Dloopclose genkic_bin_perturbing genkic_bin_sampling genkic_bin_setting genkic_dihedral_copying genkic_lowmemory_mode genkic_rama_filter genkic_ramaprepro_sampling genkic_sugars geometric_solvation glycan_anomers glycan_clash_check glycan_refinment glycan_relax glycan_sequon_scanner glycan_tree_relax glycomutagenesis glycopeptidedocking glycopeptidedocking_diglyco_long glycosylation grid_scores_features hbnet hbnet_asymm hbnet_energy hbnet_energy_rosettascripts_linear hbnet_energy_symm hbnet_use_input_rot hbonds hbonds_sp2 hbondstoresidue_selector hbs_design header_using_check helical_bundle helical_bundle_nonideal helical_bundle_predict helical_bundle_predict_psipred helical_bundle_predict_psipred_with_helix_globals helical_bundle_predict_sequence helical_bundle_predict_skipping_residues helix_from_sequence hierarchical_clustering homodimer_fnd_ref2015_memb hotspot_graft hotspot_hashing hotspot_stub_constraints hshash_utils hts_io hybridization hydrate hydrate_relax identify_cdr_clusters ig_dump include_cc_check interaction_graph_summary_metric interface_energy inv_kin_lig_loop_design iphold jd2test_PDBIO jd2test_PDBin_mmCIFout jd2test_PDBin_mmCIFout_extra_data_separate jd2test_mmCIFIO jd2test_mmCIFin_PDBout job_definition_script_vars jrelax jscore kinemage_grid_output kinematic_looprelax ld_converter ligand_database_io ligand_dock_7cpa ligand_dock_cholesterol ligand_dock_ensemble ligand_dock_grid ligand_dock_script ligand_motif_design ligand_motif_discovery ligand_motif_identification ligand_water_docking longest_continuous_polar_segment_filter loop_creation loop_grower_N_term_symm loop_hash loop_modeling make_and_perturb_bundle_multirepeat make_exemplar make_mainchain_potential make_mainchain_potential_symm make_mainchain_potential_symm_preproline make_rot_lib make_symmdef_file match_1c2t match_1n9l match_6cpa match_xml measure_lcaa_radii membrane_abinitio metal_setup metalloprotein_abrelax metalloprotein_broker metropolis_hastings mf_fixbb_des mf_fixbb_sc mf_flexbb_sc mg_modeler mg_modeler_lores mhc_epitope mhc_epitope_nmer_preload min_pack_min minimize_6Dloopclose minimize_with_elec_dens mirror_symm mixed_monte_carlo mm_params mmtfIO_score_test molfile_to_params molfile_to_params_polymer motif_dna_packer_design motif_extraction motif_score_filter mp_dock mp_dock_ensemble mp_dock_prepack mp_dock_setup mp_domain_assembly mp_domain_assembly_FtsQ mp_find_interface mp_interface_statistics mp_ligand_interface mp_loadtime mp_mutate_relax mp_mutate_repack mp_quick_relax mp_quick_relax_ref2015_memb mp_range_relax mp_relax mp_score_jd2 mp_span_ang_ref2015_memb mp_span_from_pdb mp_symdock mp_symmetry_load mp_transform mp_transform_optimize mp_vis_emb mpi_multistate_design mpi_simple_cycpep_predict mpi_simple_cycpep_predict_4level mpi_simple_cycpep_predict_computing_pnear_to_all mpil_find_pore_ahelical mpil_find_pore_bbarrel mpil_load_implicit_lipids mr_protocols multistage_rosetta_scripts multistage_rosetta_scripts_clustering multithreaded_fastdesign multithreaded_fixbb multithreaded_interaction_graph_accuracy multithreaded_interaction_graph_accuracy_symm multithreaded_packrotamersmover mutate ncaa_fixbb ncbb_packer_palette netcharge_design netcharge_design_symm next_generation_KIC noe_assignment non-canonical_connectivities nonideal_rtmin nucleobase_sample_around number_of_residuetypes oligourea_design oligourea_predict oop_create oop_design oop_dock_design orbitals output_schema pH_mode pepspec_anchor_dock peptiderive per_residue_energies per_residue_sc_sasa per_residue_solvent_exposure pertmin perturb_helical_bundle perturb_helical_bundle_copying_pitch perturb_helical_bundle_epsilon perturb_helical_bundle_setting perturb_helical_bundle_z_offset phiselector phosphonate phosphorylation place_simultaneously pmut_scan pna pna_base_pairs pocket_measure pocket_relax pocket_suggest_targets polyaramid_test_trivial pose_sewing posttranslationalmod_io ppi_v3_suiteA ppi_v3_suiteB ppi_v3_suiteC ppi_v3_suiteD ppi_v3_suiteE ppi_v3_suiteF ppi_v3_suiteG ppk proteinMPNN_model_perplexity protocol_metric pwsho pymol_cif r_pdb2top r_rmsf ralford_dump_rotamers rama_mutation_selector range_relax_w_cst rb_recces rdkit_metrics read_polymeric_components readin_dna_rna_protein real_virt_mover recces_turner recon_design recon_design_mpi referencepose_mutateresidue relax_w_allatom_cst remodel_disulfides_rosettascripts remodel_helical_repeat remove_duplicate_motifs repack_with_elec_dens repeat_propagate repeat_propagate_v2 repeat_propagate_v3 repeat_relax replica_docking report_hbonds_for_plugin res_lipo_ref2015_memb residue_energy_breakdown resource_database_locator restype_converter rings rna_add_WC_stats rna_assemble rna_cluster rna_denovo rna_denovo_RNP_low_res rna_denovo_RNP_refine_native rna_denovo_base_pair_constraints rna_denovo_base_pair_setup rna_denovo_bps rna_denovo_bps_fixed_ends rna_denovo_bps_helix_ends rna_denovo_dna_bridge rna_denovo_fragment_homology_exclusion rna_denovo_grid_vdw rna_denovo_lariat rna_denovo_new_FT_2in_dens rna_denovo_new_FT_5P_j12_leadzyme rna_denovo_new_FT_RNP_2prot_dens rna_denovo_new_FT_rna_two_chains rna_denovo_new_libs rna_denovo_symm_hack rna_design rna_farfar_block_stack rna_farfar_noncanonical_hairpin rna_farfar_syn_chi_res rna_helix rna_minimize rna_minimize_6D_loop_close rna_motif rna_predict_chem_map rna_puzzle11_H2H3H4_run3_connectU40 rna_puzzle12_P5P6P7_DMS rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation rna_puzzle5_p2_GAAA_mini rna_puzzle6_U75G76A77_on_thread1 rna_puzzle6_j67_into_p6p7rigidbody_thread1 rna_ribosome_tether rna_score rna_screen_phosphates rna_suitename rnp_ddg_calc_mut rnp_ddg_calc_setup rnp_ddg_calc_wt rnp_ddg_finalize rnp_ddg_relax_command_1 rnp_ddg_relax_command_2 rnp_ddg_relax_finalize rnp_ddg_relax_setup rollmover rosetta_scripts_hbond_options rosetta_scripts_include rosetta_scripts_info rosetta_scripts_jd3 rosetta_scripts_loops rosetta_scripts_setup rosie_ligand_docking rotamer_probability rotamer_recovery rotamer_recovery_compare_two_structures rs_flexbbmoves rs_loophash sample_seq_from_probs sasa_metric_options score12_docking score_aln score_jd2 score_only_silence sdf_reader secondary_structure_output seed_ensemble_JD2_JI select_best_unique_ligand_poses selected_residue_count_metric sequence_profile_constraints sequence_recovery sequence_tolerance set_torsion shobuns silent2frag simple_cycpep_predict simple_cycpep_predict_1_4_bbmb simple_cycpep_predict_angle simple_cycpep_predict_anglelength simple_cycpep_predict_beta_thioether_lariat simple_cycpep_predict_bondangle_bondlength simple_cycpep_predict_cartesian simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_design simple_cycpep_predict_lanthionine simple_cycpep_predict_nmethyl simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_peptoid simple_cycpep_predict_setting simple_cycpep_predict_sidechain_isopeptide simple_cycpep_predict_sidechain_isopeptide_reverse simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_symmetric_sampling simple_cycpep_predict_tbmb simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_cycpep_predict_terminal_disulfide_tails_2 simple_cycpep_predict_tetrahedral_metal simple_cycpep_predict_tetrahedral_metal_asp simple_cycpep_predict_thioether_cis_sampling simple_cycpep_predict_thioether_lariat simple_cycpep_predict_tma simple_cycpep_predict_trigonal_planar_metal simple_cycpep_predict_trigonal_pyramidal_metal simple_dna_test simple_glycosylation simple_glycosylation_alternate_AAs simple_grafting_movers simple_hbondstoatom simple_metric_cache simple_metric_features simple_metric_filter simple_metrics simple_metrics_b_factor simple_metrics_in_protocols simple_metrics_per_residue site_constraint small_molecule_lattice_dock smallmover_resselector smart_annealer splice_in_4loops_longer splice_in_4loops_shorter splice_out_H1_H2_longer splice_out_H1_H2_same splice_out_H1_H2_shorter splice_out_H3_longer splice_out_H3_same splice_out_H3_shorter splice_out_L1_L2_longer splice_out_L1_L2_same splice_out_L1_L2_shorter splice_out_L3_longer splice_out_L3_same splice_out_L3_shorter startfrom_file stepwise_lores stored_residue_subset struc_set_fragment_picker super_aln supercharge surface_docking swa_protein_CCDclose swa_protein_build_at_Cterminus swa_protein_build_at_Nterminus swa_protein_cluster swa_protein_combine_loops swa_protein_loop_sampler swa_protein_prepack swa_rna_erraser swa_rna_gagu_01_append swa_rna_gagu_02_prepend swa_rna_gagu_03_append_to_silent swa_rna_gagu_04_clustering swa_rna_gagu_05_prepend_to_5primeterminus swa_rna_gagu_06_append_to_3primeterminus swa_rna_gagu_07_prepend_dinucleotide swa_rna_gagu_08_append_dinucleotide swa_rna_gagu_09_sample_virtual_ribose swa_rna_gagu_10_prepend_and_ccd_close swa_rna_gagu_11_append_and_ccd_close swa_rna_gagu_12_helix_addition swa_rna_gagu_13_chunk_combination_and_closure swa_rna_gagu_14_combine_long_loop_filtering swa_rna_gagu_15_combine_long_loop_sampling swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide swa_rna_gagu_17_append_floating_base swa_rna_gagu_18_rebuild_bulge swa_rna_gagu_19_prepend_floating_base_by_jump swa_rna_gagu_20_append_floating_base_by_jump swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump swa_rna_gagu_22_prepend_and_kic_close swa_rna_gagu_23_append_and_kic_close swa_rna_loop_clusterer swa_rna_loop_sampler sweep_respair_energies swm_add_rosettascripts swm_beta_peptide_loop swm_build_full_model swm_dna_bridge swm_dna_loop swm_general_polymer_sampler swm_l_rna swm_protein_CCDmove swm_protein_from_scratch swm_protein_loop_sampler swm_protein_move_inside_coiledcoil_by_bond swm_protein_move_inside_helix_by_bond swm_protein_preminimize swm_rna_base_pair_constraints swm_rna_checkpoint_partition swm_rna_fourwayjunction swm_rna_loop_design swm_rna_move_align_dock swm_rna_move_inside_helix_by_bond swm_rna_move_inside_helix_by_jump swm_rna_move_two_strands swm_rna_nickedhelix swm_rna_protonated_adenosine swm_rna_singleloop swm_rna_srl_triplet symm_disulfidize symm_rotamer_boltzmann symmetric_cycpep_align_and_symmetrize symmetric_docking symmetrical_residue_selector symmetry_data_resource symmetry_multicomponent target_clash task_selector tcrmodel template_features tensorflow_connection_test tensorflow_manager tensorflow_simple_model_load_and_evaluate test1_benchmark test_computed_saxs_spectrum test_d_l_readin test_degreaser test_energy_method_options test_idealize test_rosetta_thread_manager_advanced_API test_rosetta_thread_manager_basic_API thermal_sampler thread_local_tracers_check threefold_symm_peptide_design threefoldlinkermover_tbmb threefoldlinkermover_tbmb_symmetric tna_base_pairs torsion_restricted_sampling trRosetta trRosettaConstraintGenerator trRosettaConstraintGenerator_rosettascripts trRosettaProtocolMover trRosettaProtocolMover_rosettascripts trRosettaProtocolMover_rosettascripts_diskwrite trRosettaProtocolMover_rosettascripts_diskwrite_only trRosetta_test_predict trRosetta_test_predict_ubiquitin trRosetta_test_predict_ubiquitin_cst_file_write trRosetta_test_predict_ubiquitin_cst_file_write_only trRosetta_test_predict_ubiquitin_init_by_bins unfolded_state_energy_calc validate_database vancomycin vip voids_penalty_energy_design voids_penalty_energy_design_symmetry write_mol_file zinc_heterodimer zinc_homodimer_design zinc_homodimer_setup
{ "compared_with_test": { "full_name": "linux.clang.integration.release_debug_no_symbols", "name": "integration.release_debug_no_symbols", "platform": { "compiler": "clang", "extras": [], "os": "linux" }, "platform_as_string": "linux.clang", "revision": { "branch": "main", "revision_id": 62109 }, "state": "failed", "test_id": 827802 }, "summary": { "failed": 3, "failed_tests": [ "include_cc_check", "ligand_motif_discovery", "remove_duplicate_motifs" ], "total": 802 }, "tests": { "AddConstraintsToCurrentConformationMover": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "AlignPDBInfoToSequences": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "AlterSpecDisruption": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "AnchorFinder": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "AnchoredDesign": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "AnchoredPDBCreator": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "BFactorSelector": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "BuildPeptide": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "CCD_loop_closure": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "CCS_PARCS": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ConsensusLoopDesign": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ContactMolecularSurface": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "DARC_electrostatics": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "DARC_make_ray_files": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "DARC_sampling_on_the_fly": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "DARC_shapeonly": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "DNA_methylation": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "DumpTrajectoryEnergy": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "DumpTrajectoryEnergy_packing": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "Enzrevert_xml": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "FavorSequenceProfileMover": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "FilterReportAsPoseExtraScoresMover": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "FlipChirality": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "FloppyTail": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "HDXEnergy": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "HOW_TO_MAKE_TESTS": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "HelixBendFilter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "InterfaceAnalyzer": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "InterfaceAnalyzer_allscores": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "InterfaceAnalyzer_bothpack": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "InterfaceAnalyzer_ligand": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "InterfaceAnalyzer_metrics": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "InterfaceAnalyzer_prepack": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "InterfaceAnalyzer_resfile": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "InterfaceAnalyzer_tracer": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "InterfaceDdG": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "KIC_refine": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "KIC_vicinity": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "KIC_with_fragments": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "LayerDesign": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "LayerDesign_symm": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "LayerSelector": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "LoopAnalyzer": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "LoopLengthChange": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ModifyVariantTypeMover": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "MutateResidue_selector": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "N-terminal_acetylation": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "OversaturatedHbondAcceptorFilter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "PDB_diagnostic": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "PTMPrediction": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "PeptideCyclizeMover": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "PeptideStubMover_prependRepeat": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "PolarDesign2019": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ProQ": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "RBOut": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ReadResfile_with_selector": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "RescorePDDF": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "RescoreSAXS": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ResidueDisorder": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "RunSimpleMetric_b_factor_test": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "SID_ERMS_prediction": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "SID_rescore": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "SSElementSelector": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "SecondaryStructureFilter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "SnugDock": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "StrandCurvatureByLevels": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "StrandHelixGeometryFilter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ThreadingInputter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "TryDisulfPermutations": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "UBQ_E2_thioester": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "UBQ_E2_thioester_extra_bodies": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "UBQ_E2_thioester_two_ubiquitins": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "UBQ_Gp_CYD-CYD": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "UBQ_Gp_LYX-Cterm": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "UnsatSelector": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "Werror_check": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "abinitio": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "abinitio_with_trRosetta": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "add_constraints_to_current_conformation": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "add_helix_sequence_constraints": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "add_helix_sequence_constraints_advanced_setup": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "add_job_pair_data": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ambiguous_nmr_distance_constraint": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "angle_recovery_stats": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "antibody_H3": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "antibody_H3_camelid": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "antibody_cc": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "antibody_designer": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "antibody_designer_camelid": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "antibody_designer_xml": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "antibody_graft": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "antibody_numbering_converter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "app_exception_handling": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "assemble_domains_jd2": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "auto-drrafter_final_results": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "auto-drrafter_setup_run_R1": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "auto-drrafter_setup_run_R2": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "auto-drrafter_setup_run_R3": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "autoNOE_rosetta": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "autosetup_metals_centroid": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "backbonegridsampler": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "backbonegridsampler_multiresidue": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "backbonegridsampler_nstruct_mode": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "backrub": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "backrub_interface_ddG": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "backrub_pilot": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "balancedKIC": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "basic_gcn_tensorflow_test": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "batch_relax": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "bcl_fragment_mutate": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "beta_strand_homodimer": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "bin_initialization": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "bin_perturbation": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "binselector": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "binselector_probins": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "broker": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "broker_membrane": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "bundlegridsampler": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "bundlegridsampler_composition_energy": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "bundlegridsampler_composition_energy_fract_range": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "bundlegridsampler_copy_pitch": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "bundlegridsampler_design": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "bundlegridsampler_design_nstruct_mode": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "bundlegridsampler_epsilon": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "bundlegridsampler_multirepeat": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "bundlegridsampler_z0_offset": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "bundlegridsampler_z1_offset": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "bundlereporter_filter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "burial_measure_centroid": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "buried_area_filter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "buried_unsat_kinemage": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "buried_unsat_voids_hbnet_design": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "buried_unsat_voids_hbnet_design_symm": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "c-term_conjugation": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "calculate_sasa": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "carbohydrates": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "cart_min_glycans": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "cartesianddg": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "case_sensitive_filenames": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ccd_ends_graft_mover_rs": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "central_class_modification": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "centroid_disulfide_scores": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "centroid_from_fullatom": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "cl_complex_rescore": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "classic_relax_1a19": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "cleanAlignment": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "cluster": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "cluster_alns": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "cluster_calibur": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "cluster_filter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "cmaes_minimizer": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "coarse_rna_scoring": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "code_template_tests_app": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "code_template_tests_citations": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "code_template_tests_src": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "code_template_tests_unit": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "coenzymes": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "combine_silent": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "composition_energy_layers": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "constel": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "constraints_metric": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "contactMap": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "control_flow_rs": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "copy_rotamer_mover": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "count_cycpep_sequences": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "coupled_moves": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crankshaft_flip": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "create_clash-based_repack_shell": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "create_sequence_motif": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crossaln": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_1_4_bbmb_asymm": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_1_4_bbmb_c2_symmetry": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_1_4_bbmb_s2_symm": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_lanthionine": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_methyllanthionine": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_octahedral": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_octahedral_s2_symm": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_square_planar": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_square_planar_d2_symm": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_square_pyramidal": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_tetrahedral_metal": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_tetrahedral_metal_asp": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_tetrahedral_metal_c2_symmetry": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_tetrahedral_metal_d2_symmetry": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_thioether": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_tma": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_tma_symm": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_trigonal_planar": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_trigonal_planar_c3_symm": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_trigonal_pyramidal": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "crosslinkermover_trigonal_pyramidal_c3_symm": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "cs_rosetta_rna": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "cst_info": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "cstfile_to_theozyme_pdb": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "custom_basetype_packer_palette": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "cyclization": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "cycpep_design_pipeline": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "cycpep_rdkit_metric": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "cycpep_rigid_body_permutation_mover": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "cycpep_symmetry_filter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "d_workflow": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "database_jd2_compact_io": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "database_jd2_io": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "database_md5": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "database_session_resource": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ddG_ensemble": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ddG_of_mutation": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ddG_scan": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ddG_sym": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "dehydro_aa_patch": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "density_denovo": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "density_refine": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "density_refine_symm": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "density_tools": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "design_glycans": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "design_w_custom_palette-CAAs": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "design_w_custom_palette-NCAAs": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "design_w_custom_palette-RNA": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "dgdp_aio": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "dgdp_script": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "dihedral_constraint_generator": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "distances": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "disulfidize_beta_cys": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "dna_interface_design": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "dock_glycans": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "dock_with_hotspot_place_simultaneously": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "docking_distance_constraints": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "docking_ensemble": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "docking_ensemble_prepack": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "docking_full_protocol": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "docking_local_refine": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "docking_local_refine_min": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "docking_low_res": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "docking_prepack": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "docking_site_constraints": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "doug_dock_design_min_mod2_cal_cal": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "drrafter_error_estimation": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "drrafter_run": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "drrafter_setup": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "drrafter_setup_build_missing": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "drrafter_setup_protein_dock": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "drrafter_setup_real_test_H": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "drrafter_setup_real_test_H_no_init": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "drrafter_setup_ribosome_test": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "drrafter_setup_simple": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "duplicate_header_guards": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "energy_based_clustering_alpha_aa": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "energy_based_clustering_alpha_aa_bin_analysis": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "energy_based_clustering_alpha_aa_dihedral": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "energy_based_clustering_alpha_aa_scorefile": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "entropy_correction": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "enumerative_sampling": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "enzdes": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "enzscore_filter_dimetal": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "enzscore_filter_dimetal_sym": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "enzscore_filter_ligand": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "enzscore_filter_metal": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "enzscore_filter_metal_sym": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "erraser_minimize": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "esm_model_perplexity": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "evolution": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "exclusively_shared_jumps": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "explicit_membrane": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "extract_atomtree_diffs": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "extract_pdbs": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "farfar_mrna": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "farnesyl": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "fast_relax": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "fast_relax_scripts": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "favor_coupling_tensor": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "favor_native_residue": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "features": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "features_database_schema": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "features_parallel": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "features_pdb": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "features_pdb_mpi": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "features_postgres": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "features_scientific_benchmark": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "fiber_diffraction": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "fiber_diffraction_fad": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "fit_helixparams": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "fit_helixparams_a3b": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "fit_helixparams_rms": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "fix_alignment_to_match_pdb": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "fixbb": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "flexpepdock": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "flexpepdock_abinitio": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "fold_and_dock": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "fold_cst_new": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "fold_from_loops": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "fragment_picker": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "fragmentpicker_integration_demo": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "fuzzy": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ga_ligand_dock": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ga_ligand_dock_amino_acid": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ga_ligand_dock_macrocycle": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "gen_apo_grids": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "gen_lig_grids": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "generate_6Dloopclose": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "genkic_bin_perturbing": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "genkic_bin_sampling": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "genkic_bin_setting": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "genkic_dihedral_copying": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "genkic_lowmemory_mode": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "genkic_rama_filter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "genkic_ramaprepro_sampling": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "genkic_sugars": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "geometric_solvation": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "glycan_anomers": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "glycan_clash_check": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "glycan_refinment": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "glycan_relax": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "glycan_sequon_scanner": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "glycan_tree_relax": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "glycomutagenesis": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "glycopeptidedocking": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "glycopeptidedocking_diglyco_long": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "glycosylation": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "grid_scores_features": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "hbnet": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "hbnet_asymm": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "hbnet_energy": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "hbnet_energy_rosettascripts_linear": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "hbnet_energy_symm": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "hbnet_use_input_rot": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "hbonds": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "hbonds_sp2": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "hbondstoresidue_selector": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "hbs_design": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "header_using_check": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "helical_bundle": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "helical_bundle_nonideal": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "helical_bundle_predict": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "helical_bundle_predict_psipred": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "helical_bundle_predict_psipred_with_helix_globals": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "helical_bundle_predict_sequence": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "helical_bundle_predict_skipping_residues": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "helix_from_sequence": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "hierarchical_clustering": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "homodimer_fnd_ref2015_memb": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "hotspot_graft": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "hotspot_hashing": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "hotspot_stub_constraints": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "hshash_utils": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "hts_io": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "hybridization": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "hydrate": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "hydrate_relax": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "identify_cdr_clusters": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ig_dump": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "include_cc_check": { "log": "First run, no previous results available. Skipping comparison...\n\nCompare(...): Marking as \"Script failed\" due to presense of .test_did_not_run.log or .test_got_timeout_kill.log file!\n", "state": "script failed" }, "interaction_graph_summary_metric": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "interface_energy": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "inv_kin_lig_loop_design": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "iphold": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "jd2test_PDBIO": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "jd2test_PDBin_mmCIFout": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "jd2test_PDBin_mmCIFout_extra_data_separate": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "jd2test_mmCIFIO": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "jd2test_mmCIFin_PDBout": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "job_definition_script_vars": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "jrelax": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "jscore": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "kinemage_grid_output": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "kinematic_looprelax": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ld_converter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ligand_database_io": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ligand_dock_7cpa": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ligand_dock_cholesterol": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ligand_dock_ensemble": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ligand_dock_grid": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ligand_dock_script": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ligand_motif_design": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ligand_motif_discovery": { "log": "First run, no previous results available. Skipping comparison...\n\nCompare(...): Marking as \"Script failed\" due to presense of .test_did_not_run.log or .test_got_timeout_kill.log file!\n", "state": "script failed" }, "ligand_motif_identification": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ligand_water_docking": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "longest_continuous_polar_segment_filter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "loop_creation": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "loop_grower_N_term_symm": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "loop_hash": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "loop_modeling": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "make_and_perturb_bundle_multirepeat": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "make_exemplar": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "make_mainchain_potential": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "make_mainchain_potential_symm": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "make_mainchain_potential_symm_preproline": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "make_rot_lib": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "make_symmdef_file": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "match_1c2t": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "match_1n9l": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "match_6cpa": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "match_xml": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "measure_lcaa_radii": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "membrane_abinitio": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "metal_setup": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "metalloprotein_abrelax": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "metalloprotein_broker": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "metropolis_hastings": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mf_fixbb_des": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mf_fixbb_sc": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mf_flexbb_sc": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mg_modeler": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mg_modeler_lores": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mhc_epitope": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mhc_epitope_nmer_preload": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "min_pack_min": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "minimize_6Dloopclose": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "minimize_with_elec_dens": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mirror_symm": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mixed_monte_carlo": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mm_params": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mmtfIO_score_test": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "molfile_to_params": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "molfile_to_params_polymer": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "motif_dna_packer_design": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "motif_extraction": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "motif_score_filter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_dock": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_dock_ensemble": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_dock_prepack": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_dock_setup": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_domain_assembly": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_domain_assembly_FtsQ": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_find_interface": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_interface_statistics": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_ligand_interface": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_loadtime": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_mutate_relax": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_mutate_repack": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_quick_relax": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_quick_relax_ref2015_memb": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_range_relax": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_relax": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_score_jd2": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_span_ang_ref2015_memb": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_span_from_pdb": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_symdock": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_symmetry_load": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_transform": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_transform_optimize": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mp_vis_emb": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mpi_multistate_design": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mpi_simple_cycpep_predict": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mpi_simple_cycpep_predict_4level": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mpi_simple_cycpep_predict_computing_pnear_to_all": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mpil_find_pore_ahelical": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mpil_find_pore_bbarrel": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mpil_load_implicit_lipids": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mr_protocols": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "multistage_rosetta_scripts": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "multistage_rosetta_scripts_clustering": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "multithreaded_fastdesign": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "multithreaded_fixbb": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "multithreaded_interaction_graph_accuracy": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "multithreaded_interaction_graph_accuracy_symm": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "multithreaded_packrotamersmover": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "mutate": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ncaa_fixbb": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ncbb_packer_palette": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "netcharge_design": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "netcharge_design_symm": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "next_generation_KIC": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "noe_assignment": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "non-canonical_connectivities": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "nonideal_rtmin": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "nucleobase_sample_around": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "number_of_residuetypes": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "oligourea_design": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "oligourea_predict": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "oop_create": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "oop_design": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "oop_dock_design": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "orbitals": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "output_schema": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "pH_mode": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "pepspec_anchor_dock": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "peptiderive": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "per_residue_energies": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "per_residue_sc_sasa": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "per_residue_solvent_exposure": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "pertmin": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "perturb_helical_bundle": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "perturb_helical_bundle_copying_pitch": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "perturb_helical_bundle_epsilon": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "perturb_helical_bundle_setting": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "perturb_helical_bundle_z_offset": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "phiselector": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "phosphonate": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "phosphorylation": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "place_simultaneously": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "pmut_scan": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "pna": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "pna_base_pairs": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "pocket_measure": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "pocket_relax": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "pocket_suggest_targets": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "polyaramid_test_trivial": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "pose_sewing": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "posttranslationalmod_io": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ppi_v3_suiteA": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ppi_v3_suiteB": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ppi_v3_suiteC": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ppi_v3_suiteD": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ppi_v3_suiteE": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ppi_v3_suiteF": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ppi_v3_suiteG": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ppk": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "proteinMPNN_model_perplexity": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "protocol_metric": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "pwsho": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "pymol_cif": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "r_pdb2top": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "r_rmsf": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "ralford_dump_rotamers": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rama_mutation_selector": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "range_relax_w_cst": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rb_recces": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rdkit_metrics": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "read_polymeric_components": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "readin_dna_rna_protein": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "real_virt_mover": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "recces_turner": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "recon_design": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "recon_design_mpi": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "referencepose_mutateresidue": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "relax_w_allatom_cst": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "remodel_disulfides_rosettascripts": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "remodel_helical_repeat": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "remove_duplicate_motifs": { "log": "First run, no previous results available. Skipping comparison...\n\nCompare(...): Marking as \"Script failed\" due to presense of .test_did_not_run.log or .test_got_timeout_kill.log file!\n", "state": "script failed" }, "repack_with_elec_dens": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "repeat_propagate": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "repeat_propagate_v2": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "repeat_propagate_v3": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "repeat_relax": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "replica_docking": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "report_hbonds_for_plugin": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "res_lipo_ref2015_memb": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "residue_energy_breakdown": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "resource_database_locator": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "restype_converter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rings": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_add_WC_stats": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_assemble": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_cluster": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_denovo": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_denovo_RNP_low_res": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_denovo_RNP_refine_native": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_denovo_base_pair_constraints": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_denovo_base_pair_setup": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_denovo_bps": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_denovo_bps_fixed_ends": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_denovo_bps_helix_ends": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_denovo_dna_bridge": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_denovo_fragment_homology_exclusion": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_denovo_grid_vdw": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_denovo_lariat": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_denovo_new_FT_2in_dens": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_denovo_new_FT_5P_j12_leadzyme": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_denovo_new_FT_RNP_2prot_dens": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_denovo_new_FT_rna_two_chains": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_denovo_new_libs": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_denovo_symm_hack": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_design": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_farfar_block_stack": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_farfar_noncanonical_hairpin": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_farfar_syn_chi_res": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_helix": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_minimize": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_minimize_6D_loop_close": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_motif": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_predict_chem_map": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_puzzle11_H2H3H4_run3_connectU40": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_puzzle12_P5P6P7_DMS": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_puzzle5_p2_GAAA_mini": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_puzzle6_U75G76A77_on_thread1": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_puzzle6_j67_into_p6p7rigidbody_thread1": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_ribosome_tether": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_score": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_screen_phosphates": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rna_suitename": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rnp_ddg_calc_mut": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rnp_ddg_calc_setup": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rnp_ddg_calc_wt": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rnp_ddg_finalize": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rnp_ddg_relax_command_1": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rnp_ddg_relax_command_2": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rnp_ddg_relax_finalize": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rnp_ddg_relax_setup": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rollmover": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rosetta_scripts_hbond_options": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rosetta_scripts_include": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rosetta_scripts_info": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rosetta_scripts_jd3": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rosetta_scripts_loops": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rosetta_scripts_setup": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rosie_ligand_docking": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rotamer_probability": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rotamer_recovery": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rotamer_recovery_compare_two_structures": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rs_flexbbmoves": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "rs_loophash": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "sample_seq_from_probs": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "sasa_metric_options": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "score12_docking": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "score_aln": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "score_jd2": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "score_only_silence": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "sdf_reader": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "secondary_structure_output": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "seed_ensemble_JD2_JI": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "select_best_unique_ligand_poses": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "selected_residue_count_metric": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "sequence_profile_constraints": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "sequence_recovery": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "sequence_tolerance": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "set_torsion": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "shobuns": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "silent2frag": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_1_4_bbmb": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_angle": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_anglelength": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_beta_thioether_lariat": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_bondangle_bondlength": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_cartesian": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_cispro": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_cterm_isopeptide_lariat": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_cterm_isopeptide_lariat_tailless": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_design": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_lanthionine": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_nmethyl": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_nterm_isopeptide_lariat": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_nterm_isopeptide_lariat_tailless": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_octahedral_metal": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_peptoid": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_setting": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_sidechain_isopeptide": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_sidechain_isopeptide_reverse": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_square_planar_metal": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_square_pyramidal_metal": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_symm_gly": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_symmetric_sampling": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_tbmb": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_terminal_disulfide": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_terminal_disulfide_internal_permutations": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_terminal_disulfide_tails": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_terminal_disulfide_tails_2": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_tetrahedral_metal": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_tetrahedral_metal_asp": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_thioether_cis_sampling": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_thioether_lariat": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_tma": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_trigonal_planar_metal": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_cycpep_predict_trigonal_pyramidal_metal": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_dna_test": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_glycosylation": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_glycosylation_alternate_AAs": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_grafting_movers": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_hbondstoatom": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_metric_cache": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_metric_features": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_metric_filter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_metrics": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_metrics_b_factor": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_metrics_in_protocols": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "simple_metrics_per_residue": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "site_constraint": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "small_molecule_lattice_dock": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "smallmover_resselector": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "smart_annealer": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "splice_in_4loops_longer": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "splice_in_4loops_shorter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "splice_out_H1_H2_longer": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "splice_out_H1_H2_same": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "splice_out_H1_H2_shorter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "splice_out_H3_longer": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "splice_out_H3_same": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "splice_out_H3_shorter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "splice_out_L1_L2_longer": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "splice_out_L1_L2_same": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "splice_out_L1_L2_shorter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "splice_out_L3_longer": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "splice_out_L3_same": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "splice_out_L3_shorter": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "startfrom_file": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "stepwise_lores": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "stored_residue_subset": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "struc_set_fragment_picker": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "super_aln": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "supercharge": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "surface_docking": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_protein_CCDclose": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_protein_build_at_Cterminus": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_protein_build_at_Nterminus": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_protein_cluster": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_protein_combine_loops": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_protein_loop_sampler": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_protein_prepack": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_erraser": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_01_append": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_02_prepend": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_03_append_to_silent": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_04_clustering": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_05_prepend_to_5primeterminus": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_06_append_to_3primeterminus": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_07_prepend_dinucleotide": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_08_append_dinucleotide": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_09_sample_virtual_ribose": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_10_prepend_and_ccd_close": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_11_append_and_ccd_close": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_12_helix_addition": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_13_chunk_combination_and_closure": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_14_combine_long_loop_filtering": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_15_combine_long_loop_sampling": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_17_append_floating_base": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_18_rebuild_bulge": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_19_prepend_floating_base_by_jump": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_20_append_floating_base_by_jump": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_22_prepend_and_kic_close": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_gagu_23_append_and_kic_close": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_loop_clusterer": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swa_rna_loop_sampler": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "sweep_respair_energies": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_add_rosettascripts": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_beta_peptide_loop": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_build_full_model": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_dna_bridge": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_dna_loop": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_general_polymer_sampler": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_l_rna": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_protein_CCDmove": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_protein_from_scratch": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_protein_loop_sampler": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_protein_move_inside_coiledcoil_by_bond": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_protein_move_inside_helix_by_bond": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_protein_preminimize": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_rna_base_pair_constraints": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_rna_checkpoint_partition": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_rna_fourwayjunction": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_rna_loop_design": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_rna_move_align_dock": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_rna_move_inside_helix_by_bond": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_rna_move_inside_helix_by_jump": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_rna_move_two_strands": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_rna_nickedhelix": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_rna_protonated_adenosine": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_rna_singleloop": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "swm_rna_srl_triplet": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "symm_disulfidize": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "symm_rotamer_boltzmann": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "symmetric_cycpep_align_and_symmetrize": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "symmetric_docking": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "symmetrical_residue_selector": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "symmetry_data_resource": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "symmetry_multicomponent": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "target_clash": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "task_selector": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "tcrmodel": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "template_features": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "tensorflow_connection_test": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "tensorflow_manager": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "tensorflow_simple_model_load_and_evaluate": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "test1_benchmark": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "test_computed_saxs_spectrum": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "test_d_l_readin": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "test_degreaser": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "test_energy_method_options": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "test_idealize": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "test_rosetta_thread_manager_advanced_API": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "test_rosetta_thread_manager_basic_API": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "thermal_sampler": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "thread_local_tracers_check": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "threefold_symm_peptide_design": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "threefoldlinkermover_tbmb": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "threefoldlinkermover_tbmb_symmetric": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "tna_base_pairs": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "torsion_restricted_sampling": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "trRosetta": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "trRosettaConstraintGenerator": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "trRosettaConstraintGenerator_rosettascripts": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "trRosettaProtocolMover": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "trRosettaProtocolMover_rosettascripts": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "trRosettaProtocolMover_rosettascripts_diskwrite": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "trRosettaProtocolMover_rosettascripts_diskwrite_only": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "trRosetta_test_predict": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "trRosetta_test_predict_ubiquitin": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "trRosetta_test_predict_ubiquitin_cst_file_write": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "trRosetta_test_predict_ubiquitin_cst_file_write_only": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "trRosetta_test_predict_ubiquitin_init_by_bins": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "unfolded_state_energy_calc": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "validate_database": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "vancomycin": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "vip": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "voids_penalty_energy_design": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "voids_penalty_energy_design_symmetry": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "write_mol_file": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "zinc_heterodimer": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "zinc_homodimer_design": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" }, "zinc_homodimer_setup": { "log": "First run, no previous results available. Skipping comparison...\n", "state": "passed" } } }