Compiling: find bin -type l ! -name ".*" -exec rm {} \; ; /home/benchmark/prefix/nobu-2/ubuntu/python-3.9.gcc/99a1a29fd465f86265a7c5b92d75dbcd/bin/python3.9 ./scons.py bin mode=ubsan cxx=gcc extras= -j48
Running: unset __PYVENV_LAUNCHER__ && . /home/benchmark/prefix/nobu-2/ubuntu/python_virtual_environments/python-3.9/a02ef589716a70d98dc113f9da741d7f/bin/activate && cd /home/benchmark/rosetta/tests/integration && python ./integration.py --mode=ubsan --compiler=gcc --extras= --timeout=3600 -j48 --skip-comparison --additional_flags "-in:path:database_cache_dir /home/benchmark/rosetta/.database-binaries/ubuntugccubsan"
Running integration script...
Command line: unset __PYVENV_LAUNCHER__ && . /home/benchmark/prefix/nobu-2/ubuntu/python_virtual_environments/python-3.9/a02ef589716a70d98dc113f9da741d7f/bin/activate && cd /home/benchmark/rosetta/tests/integration && python ./integration.py --mode=ubsan --compiler=gcc --extras= --timeout=3600 -j48 --skip-comparison --additional_flags "-in:path:database_cache_dir /home/benchmark/rosetta/.database-binaries/ubuntugccubsan"
Using Rosetta source dir at: /home/benchmark/rosetta/source
Using Rosetta database dir at:/home/benchmark/rosetta/database
Current Versions Tested:
MAIN: 200d5f9a7d8cdd7afdd078f156da6b5a7d97543f
TOOLS: b0af2521cbed1f2bde597ef1c5406efa376a6f85
DEMOS: 48c9239db73b9a8c828954d9215c983b9f144c92
Python: `/home/benchmark/prefix/nobu-2/ubuntu/python_virtual_environments/python-3.9/a02ef589716a70d98dc113f9da741d7f/bin/python`
Outdir: new
No correct command.sh file found for trRosetta_test_predict_ubiquitin_init_by_bins. Skipping.
Running Test voids_penalty_energy_design_symmetry
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/voids_penalty_energy_design_symmetry/command.sh
Running Test voids_penalty_energy_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/voids_penalty_energy_design/command.sh
Running Test trRosetta_test_predict_ubiquitin_cst_file_write_only
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosetta_test_predict_ubiquitin_cst_file_write_only/command.sh
Running Test trRosetta_test_predict_ubiquitin_cst_file_write
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosetta_test_predict_ubiquitin_cst_file_write/command.sh
No correct command.sh file found for trRosetta_test_predict. Skipping.
Running Test trRosetta_test_predict_ubiquitin
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosetta_test_predict_ubiquitin/command.sh
Running Test trRosettaProtocolMover_rosettascripts_diskwrite_only
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosettaProtocolMover_rosettascripts_diskwrite_only/command.sh
Running Test trRosettaProtocolMover_rosettascripts_diskwrite
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosettaProtocolMover_rosettascripts_diskwrite/command.sh
No correct command.sh file found for trRosettaProtocolMover. Skipping.
Running Test trRosettaProtocolMover_rosettascripts
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosettaProtocolMover_rosettascripts/command.sh
No correct command.sh file found for trRosettaConstraintGenerator. Skipping.
No correct command.sh file found for trRosetta. Skipping.
Running Test trRosettaConstraintGenerator_rosettascripts
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/trRosettaConstraintGenerator_rosettascripts/command.sh
Running Test tna_base_pairs
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/tna_base_pairs/command.sh
No correct command.sh file found for test_rosetta_thread_manager_basic_API. Skipping.
No correct command.sh file found for test_rosetta_thread_manager_advanced_API. Skipping.
Running Test thread_local_tracers_check
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/thread_local_tracers_check/command.sh
Running Test test_energy_method_options
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/test_energy_method_options/command.sh
No correct command.sh file found for tensorflow_simple_model_load_and_evaluate. Skipping.
No correct command.sh file found for tensorflow_manager. Skipping.
No correct command.sh file found for tensorflow_connection_test. Skipping.
Running Test test_degreaser
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/test_degreaser/command.sh
Running Test tcrmodel
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/tcrmodel/command.sh
Running Test target_clash
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/target_clash/command.sh
Running Test swm_rna_checkpoint_partition
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_checkpoint_partition/command.sh
Running Test swm_rna_base_pair_constraints
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_base_pair_constraints/command.sh
Running Test swm_general_polymer_sampler
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_general_polymer_sampler/command.sh
Running Test swm_dna_loop
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_dna_loop/command.sh
Running Test swm_dna_bridge
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_dna_bridge/command.sh
No correct command.sh file found for smart_annealer. Skipping.
Running Test swm_add_rosettascripts
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_add_rosettascripts/command.sh
Running Test small_molecule_lattice_dock
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/small_molecule_lattice_dock/command.sh
Running Test simple_metrics_per_residue
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metrics_per_residue/command.sh
Running Test simple_metrics_in_protocols
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metrics_in_protocols/command.sh
Running Test simple_metrics_b_factor
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metrics_b_factor/command.sh
Running Test simple_metrics
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metrics/command.sh
Running Test simple_metric_filter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metric_filter/command.sh
Running Test simple_metric_features
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metric_features/command.sh
Running Test simple_metric_cache
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_metric_cache/command.sh
Running Test simple_grafting_movers
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_grafting_movers/command.sh
Running Test simple_glycosylation_alternate_AAs
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_glycosylation_alternate_AAs/command.sh
Running Test simple_cycpep_predict_trigonal_pyramidal_metal
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_trigonal_pyramidal_metal/command.sh
Running Test simple_cycpep_predict_trigonal_planar_metal
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_trigonal_planar_metal/command.sh
Running Test simple_cycpep_predict_tma
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_tma/command.sh
Running Test simple_cycpep_predict_thioether_lariat
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_thioether_lariat/command.sh
Running Test simple_cycpep_predict_thioether_cis_sampling
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_thioether_cis_sampling/command.sh
Running Test simple_cycpep_predict_tetrahedral_metal_asp
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_tetrahedral_metal_asp/command.sh
Running Test simple_cycpep_predict_tetrahedral_metal
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_tetrahedral_metal/command.sh
Running Test simple_cycpep_predict_terminal_disulfide_tails_2
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_tails_2/command.sh
Running Test simple_cycpep_predict_terminal_disulfide_tails
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_tails/command.sh
Running Test simple_cycpep_predict_terminal_disulfide_internal_permutations
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide_internal_permutations/command.sh
Running Test simple_cycpep_predict_terminal_disulfide
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_terminal_disulfide/command.sh
Running Test simple_cycpep_predict_square_pyramidal_metal
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_square_pyramidal_metal/command.sh
Running Test simple_cycpep_predict_square_planar_metal
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_square_planar_metal/command.sh
Running Test simple_cycpep_predict_sidechain_isopeptide_reverse
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_sidechain_isopeptide_reverse/command.sh
Running Test simple_cycpep_predict_sidechain_isopeptide
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_sidechain_isopeptide/command.sh
Running Test simple_cycpep_predict_peptoid
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_peptoid/command.sh
Running Test simple_cycpep_predict_octahedral_metal
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_octahedral_metal/command.sh
Finished thread_local_tracers_check in 0 seconds [~ 60 test (7.49063670411985%) started, 741 in queue, 48 running]
Running Test simple_cycpep_predict_nterm_isopeptide_lariat_tailless
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_nterm_isopeptide_lariat_tailless/command.sh
Finished test_energy_method_options in 4 seconds [~ 61 test (7.615480649188514%) started, 740 in queue, 48 running]
Running Test simple_cycpep_predict_nterm_isopeptide_lariat
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_nterm_isopeptide_lariat/command.sh
Finished trRosettaConstraintGenerator_rosettascripts in 4 seconds [~ 62 test (7.740324594257179%) started, 739 in queue, 48 running]
Running Test simple_cycpep_predict_lanthionine
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_lanthionine/command.sh
Finished trRosetta_test_predict_ubiquitin_cst_file_write_only in 14 seconds [~ 63 test (7.865168539325842%) started, 738 in queue, 48 running]
Finished trRosetta_test_predict_ubiquitin_cst_file_write in 14 seconds [~ 63 test (7.865168539325842%) started, 738 in queue, 47 running]
Finished trRosetta_test_predict_ubiquitin in 14 seconds [~ 63 test (7.865168539325842%) started, 738 in queue, 46 running]
Running Test simple_cycpep_predict_cterm_isopeptide_lariat_tailless
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_cterm_isopeptide_lariat_tailless/command.sh
Running Test simple_cycpep_predict_cterm_isopeptide_lariat
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_cterm_isopeptide_lariat/command.sh
Running Test simple_cycpep_predict_bondangle_bondlength
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_bondangle_bondlength/command.sh
Finished trRosettaProtocolMover_rosettascripts in 30 seconds [~ 66 test (8.239700374531836%) started, 735 in queue, 48 running]
Running Test simple_cycpep_predict_beta_thioether_lariat
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_beta_thioether_lariat/command.sh
Finished trRosettaProtocolMover_rosettascripts_diskwrite_only in 30 seconds [~ 67 test (8.3645443196005%) started, 734 in queue, 48 running]
Finished trRosettaProtocolMover_rosettascripts_diskwrite in 30 seconds [~ 67 test (8.3645443196005%) started, 734 in queue, 47 running]
Running Test simple_cycpep_predict_1_4_bbmb
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_1_4_bbmb/command.sh
Running Test selected_residue_count_metric
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/selected_residue_count_metric/command.sh
Finished simple_cycpep_predict_terminal_disulfide in 41 seconds [~ 69 test (8.614232209737828%) started, 732 in queue, 48 running]
Running Test sasa_metric_options
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sasa_metric_options/command.sh
Finished tcrmodel in 46 seconds [~ 70 test (8.739076154806492%) started, 731 in queue, 48 running]
Running Test sample_seq_from_probs
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sample_seq_from_probs/command.sh
Finished simple_cycpep_predict_lanthionine in 42 seconds [~ 71 test (8.863920099875156%) started, 730 in queue, 48 running]
Running Test rosetta_scripts_jd3
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosetta_scripts_jd3/command.sh
Finished simple_cycpep_predict_terminal_disulfide_tails in 52 seconds [~ 72 test (8.98876404494382%) started, 729 in queue, 48 running]
Running Test rnp_ddg_relax_setup
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_relax_setup/command.sh
PYTHON IS /home/benchmark/prefix/nobu-2/ubuntu/python_virtual_environments/python-3.9/a02ef589716a70d98dc113f9da741d7f/bin/python
Finished rnp_ddg_relax_setup in 0 seconds [~ 73 test (9.113607990012484%) started, 728 in queue, 48 running]
Running Test rnp_ddg_relax_finalize
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_relax_finalize/command.sh
PYTHON IS /home/benchmark/prefix/nobu-2/ubuntu/python_virtual_environments/python-3.9/a02ef589716a70d98dc113f9da741d7f/bin/python
Finished rnp_ddg_relax_finalize in 0 seconds [~ 74 test (9.238451935081148%) started, 727 in queue, 48 running]
Running Test rnp_ddg_relax_command_2
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_relax_command_2/command.sh
Finished target_clash in 61 seconds [~ 75 test (9.363295880149813%) started, 726 in queue, 48 running]
Running Test rnp_ddg_relax_command_1
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_relax_command_1/command.sh
Finished tna_base_pairs in 62 seconds [~ 76 test (9.488139825218477%) started, 725 in queue, 48 running]
Running Test rnp_ddg_finalize
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_finalize/command.sh
PYTHON IS /home/benchmark/prefix/nobu-2/ubuntu/python_virtual_environments/python-3.9/a02ef589716a70d98dc113f9da741d7f/bin/python
Finished rnp_ddg_finalize in 0 seconds [~ 77 test (9.61298377028714%) started, 724 in queue, 48 running]
Running Test rnp_ddg_calc_wt
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_calc_wt/command.sh
Finished simple_cycpep_predict_square_planar_metal in 66 seconds [~ 78 test (9.737827715355806%) started, 723 in queue, 48 running]
Running Test rnp_ddg_calc_setup
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_calc_setup/command.sh
PYTHON is /home/benchmark/prefix/nobu-2/ubuntu/python_virtual_environments/python-3.9/a02ef589716a70d98dc113f9da741d7f/bin/python
Finished rnp_ddg_calc_setup in 0 seconds [~ 79 test (9.86267166042447%) started, 722 in queue, 48 running]
Running Test rnp_ddg_calc_mut
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rnp_ddg_calc_mut/command.sh
Finished simple_grafting_movers in 68 seconds [~ 80 test (9.987515605493133%) started, 721 in queue, 48 running]
Running Test rna_predict_chem_map
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_predict_chem_map/command.sh
Finished simple_metrics_b_factor in 69 seconds [~ 81 test (10.112359550561798%) started, 720 in queue, 48 running]
Running Test rna_denovo_symm_hack
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_symm_hack/command.sh
Finished simple_cycpep_predict_cterm_isopeptide_lariat_tailless in 56 seconds [~ 82 test (10.237203495630462%) started, 719 in queue, 48 running]
Running Test rna_denovo_new_libs
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_new_libs/command.sh
Finished simple_cycpep_predict_sidechain_isopeptide_reverse in 73 seconds [~ 83 test (10.362047440699126%) started, 718 in queue, 48 running]
Finished simple_cycpep_predict_cterm_isopeptide_lariat in 59 seconds [~ 83 test (10.362047440699126%) started, 718 in queue, 47 running]
Running Test rna_denovo_new_FT_rna_two_chains
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_new_FT_rna_two_chains/command.sh
Running Test rna_denovo_new_FT_RNP_2prot_dens
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_new_FT_RNP_2prot_dens/command.sh
Finished simple_cycpep_predict_nterm_isopeptide_lariat_tailless in 73 seconds [~ 85 test (10.611735330836455%) started, 716 in queue, 48 running]
Running Test rna_denovo_new_FT_5P_j12_leadzyme
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_new_FT_5P_j12_leadzyme/command.sh
Finished simple_cycpep_predict_nterm_isopeptide_lariat in 71 seconds [~ 86 test (10.736579275905118%) started, 715 in queue, 48 running]
Running Test rna_denovo_new_FT_2in_dens
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_new_FT_2in_dens/command.sh
Finished simple_cycpep_predict_sidechain_isopeptide in 76 seconds [~ 87 test (10.861423220973784%) started, 714 in queue, 48 running]
Running Test rna_denovo_lariat
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_lariat/command.sh
Finished simple_cycpep_predict_terminal_disulfide_internal_permutations in 78 seconds [~ 88 test (10.986267166042447%) started, 713 in queue, 48 running]
Running Test rna_denovo_fragment_homology_exclusion
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_fragment_homology_exclusion/command.sh
Finished simple_metrics_in_protocols in 79 seconds [~ 89 test (11.11111111111111%) started, 712 in queue, 48 running]
Running Test rna_denovo_dna_bridge
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_dna_bridge/command.sh
Finished swm_add_rosettascripts in 83 seconds [~ 90 test (11.235955056179776%) started, 711 in queue, 48 running]
Running Test restype_converter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/restype_converter/command.sh
Finished simple_metric_cache in 85 seconds [~ 91 test (11.36079900124844%) started, 710 in queue, 48 running]
No correct command.sh file found for replica_docking. Skipping.
Running Test res_lipo_ref2015_memb
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/res_lipo_ref2015_memb/command.sh
Finished simple_metric_filter in 89 seconds [~ 93 test (11.610486891385769%) started, 708 in queue, 48 running]
Running Test repeat_relax
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/repeat_relax/command.sh
Finished selected_residue_count_metric in 59 seconds [~ 94 test (11.735330836454432%) started, 707 in queue, 48 running]
Running Test repeat_propagate_v3
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/repeat_propagate_v3/command.sh
Finished simple_cycpep_predict_tetrahedral_metal_asp in 91 seconds [~ 95 test (11.860174781523096%) started, 706 in queue, 48 running]
Running Test repeat_propagate_v2
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/repeat_propagate_v2/command.sh
Finished simple_cycpep_predict_thioether_lariat in 92 seconds [~ 96 test (11.985018726591761%) started, 705 in queue, 48 running]
No correct command.sh file found for recon_design_mpi. Skipping.
Running Test repeat_propagate
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/repeat_propagate/command.sh
Finished simple_glycosylation_alternate_AAs in 97 seconds [~ 98 test (12.234706616729088%) started, 703 in queue, 48 running]
Running Test recon_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/recon_design/command.sh
Finished restype_converter in 15 seconds [~ 99 test (12.359550561797754%) started, 702 in queue, 48 running]
Running Test read_polymeric_components
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/read_polymeric_components/command.sh
Finished rna_predict_chem_map in 30 seconds [~ 100 test (12.484394506866417%) started, 701 in queue, 48 running]
Running Test rdkit_metrics
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rdkit_metrics/command.sh
Finished simple_metric_features in 101 seconds [~ 101 test (12.60923845193508%) started, 700 in queue, 48 running]
Running Test pymol_cif
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pymol_cif/command.sh
Finished rna_denovo_new_FT_rna_two_chains in 30 seconds [~ 102 test (12.734082397003744%) started, 699 in queue, 48 running]
No correct command.sh file found for proteinMPNN_model_perplexity. Skipping.
Running Test protocol_metric
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/protocol_metric/command.sh
Finished sample_seq_from_probs in 60 seconds [~ 104 test (12.983770287141073%) started, 697 in queue, 48 running]
Running Test pose_sewing
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pose_sewing/command.sh
Finished read_polymeric_components in 17 seconds [~ 105 test (13.108614232209737%) started, 696 in queue, 48 running]
Running Test polyaramid_test_trivial
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/polyaramid_test_trivial/command.sh
Finished sasa_metric_options in 79 seconds [~ 106 test (13.233458177278402%) started, 695 in queue, 48 running]
Running Test pna_base_pairs
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pna_base_pairs/command.sh
Finished rnp_ddg_relax_command_1 in 63 seconds [~ 107 test (13.358302122347066%) started, 694 in queue, 48 running]
Running Test phosphorylation
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/phosphorylation/command.sh
Finished pymol_cif in 31 seconds [~ 108 test (13.48314606741573%) started, 693 in queue, 48 running]
Running Test perturb_helical_bundle_setting
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/perturb_helical_bundle_setting/command.sh
Finished simple_cycpep_predict_peptoid in 140 seconds [~ 109 test (13.607990012484395%) started, 692 in queue, 48 running]
Running Test per_residue_solvent_exposure
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/per_residue_solvent_exposure/command.sh
Finished per_residue_solvent_exposure in 1 seconds [~ 110 test (13.732833957553058%) started, 691 in queue, 48 running]
Running Test output_schema
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/output_schema/command.sh
Finished res_lipo_ref2015_memb in 60 seconds [~ 111 test (13.857677902621722%) started, 690 in queue, 48 running]
Running Test oligourea_predict
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/oligourea_predict/command.sh
Finished repeat_propagate_v2 in 59 seconds [~ 112 test (13.982521847690387%) started, 689 in queue, 48 running]
Running Test oligourea_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/oligourea_design/command.sh
Finished rna_denovo_new_FT_5P_j12_leadzyme in 78 seconds [~ 113 test (14.107365792759051%) started, 688 in queue, 48 running]
Running Test netcharge_design_symm
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/netcharge_design_symm/command.sh
Finished repeat_propagate_v3 in 62 seconds [~ 114 test (14.232209737827715%) started, 687 in queue, 48 running]
Running Test netcharge_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/netcharge_design/command.sh
Finished swm_rna_checkpoint_partition in 152 seconds [~ 115 test (14.35705368289638%) started, 686 in queue, 48 running]
Running Test ncbb_packer_palette
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ncbb_packer_palette/command.sh
Finished small_molecule_lattice_dock in 154 seconds [~ 116 test (14.481897627965044%) started, 685 in queue, 48 running]
No correct command.sh file found for multithreaded_packrotamersmover. Skipping.
No correct command.sh file found for multithreaded_interaction_graph_accuracy_symm. Skipping.
No correct command.sh file found for multithreaded_interaction_graph_accuracy. Skipping.
No correct command.sh file found for multithreaded_fixbb. Skipping.
No correct command.sh file found for multithreaded_fastdesign. Skipping.
Running Test mutate
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mutate/command.sh
Finished repeat_propagate in 64 seconds [~ 122 test (15.230961298377029%) started, 679 in queue, 48 running]
Running Test multistage_rosetta_scripts_clustering
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/multistage_rosetta_scripts_clustering/command.sh
Finished rdkit_metrics in 62 seconds [~ 123 test (15.355805243445692%) started, 678 in queue, 48 running]
Running Test multistage_rosetta_scripts
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/multistage_rosetta_scripts/command.sh
Finished simple_cycpep_predict_terminal_disulfide_tails_2 in 162 seconds [~ 124 test (15.480649188514358%) started, 677 in queue, 48 running]
Finished phosphorylation in 38 seconds [~ 124 test (15.480649188514358%) started, 677 in queue, 47 running]
Running Test mpil_load_implicit_lipids
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpil_load_implicit_lipids/command.sh
Running Test mpil_find_pore_bbarrel
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpil_find_pore_bbarrel/command.sh
Finished protocol_metric in 62 seconds [~ 126 test (15.730337078651685%) started, 675 in queue, 48 running]
No correct command.sh file found for mpi_simple_cycpep_predict_computing_pnear_to_all. Skipping.
No correct command.sh file found for mpi_simple_cycpep_predict_4level. Skipping.
No correct command.sh file found for mpi_simple_cycpep_predict. Skipping.
Running Test mpil_find_pore_ahelical
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpil_find_pore_ahelical/command.sh
Finished mpil_load_implicit_lipids in 11 seconds [~ 130 test (16.22971285892634%) started, 671 in queue, 48 running]
Running Test mp_span_ang_ref2015_memb
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_span_ang_ref2015_memb/command.sh
Finished mpil_find_pore_bbarrel in 13 seconds [~ 131 test (16.354556803995006%) started, 670 in queue, 48 running]
Running Test mp_quick_relax_ref2015_memb
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_quick_relax_ref2015_memb/command.sh
Finished output_schema in 34 seconds [~ 132 test (16.47940074906367%) started, 669 in queue, 48 running]
Running Test mp_ligand_interface
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_ligand_interface/command.sh
Finished mpil_find_pore_ahelical in 11 seconds [~ 133 test (16.604244694132333%) started, 668 in queue, 48 running]
Running Test mp_domain_assembly_FtsQ
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_domain_assembly_FtsQ/command.sh
Finished simple_cycpep_predict_thioether_cis_sampling in 181 seconds [~ 134 test (16.729088639201%) started, 667 in queue, 48 running]
Running Test mp_domain_assembly
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_domain_assembly/command.sh
Finished mutate in 29 seconds [~ 135 test (16.853932584269664%) started, 666 in queue, 48 running]
Running Test mp_dock_ensemble
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_dock_ensemble/command.sh
Finished recon_design in 87 seconds [~ 136 test (16.978776529338326%) started, 665 in queue, 48 running]
Running Test molfile_to_params_polymer
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/molfile_to_params_polymer/command.sh
Finished pna_base_pairs in 64 seconds [~ 137 test (17.10362047440699%) started, 664 in queue, 48 running]
Running Test mmtfIO_score_test
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mmtfIO_score_test/command.sh
Finished simple_cycpep_predict_bondangle_bondlength in 172 seconds [~ 138 test (17.228464419475657%) started, 663 in queue, 48 running]
Running Test mixed_monte_carlo
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mixed_monte_carlo/command.sh
Finished simple_cycpep_predict_beta_thioether_lariat in 158 seconds [~ 139 test (17.35330836454432%) started, 662 in queue, 48 running]
Running Test mhc_epitope_nmer_preload
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mhc_epitope_nmer_preload/command.sh
Finished rna_denovo_new_FT_RNP_2prot_dens in 115 seconds [~ 140 test (17.478152309612984%) started, 661 in queue, 48 running]
Running Test mhc_epitope
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mhc_epitope/command.sh
Finished simple_cycpep_predict_1_4_bbmb in 161 seconds [~ 141 test (17.60299625468165%) started, 660 in queue, 48 running]
Running Test make_mainchain_potential_symm_preproline
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_mainchain_potential_symm_preproline/command.sh
Finished simple_cycpep_predict_tma in 196 seconds [~ 142 test (17.72784019975031%) started, 659 in queue, 48 running]
Running Test make_mainchain_potential_symm
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_mainchain_potential_symm/command.sh
Finished pose_sewing in 93 seconds [~ 143 test (17.852684144818976%) started, 658 in queue, 48 running]
Running Test make_mainchain_potential
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_mainchain_potential/command.sh
Finished perturb_helical_bundle_setting in 78 seconds [~ 144 test (17.97752808988764%) started, 657 in queue, 48 running]
Running Test loop_grower_N_term_symm
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/loop_grower_N_term_symm/command.sh
Finished make_mainchain_potential_symm_preproline in 26 seconds [~ 145 test (18.102372034956304%) started, 656 in queue, 48 running]
Running Test ligand_motif_identification
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_motif_identification/command.sh
Finished multistage_rosetta_scripts_clustering in 61 seconds [~ 146 test (18.22721598002497%) started, 655 in queue, 48 running]
Running Test ligand_motif_discovery
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_motif_discovery/command.sh
Finished make_mainchain_potential_symm in 25 seconds [~ 147 test (18.352059925093634%) started, 654 in queue, 48 running]
Running Test ligand_dock_cholesterol
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_dock_cholesterol/command.sh
Finished oligourea_predict in 79 seconds [~ 148 test (18.476903870162296%) started, 653 in queue, 48 running]
Running Test job_definition_script_vars
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/job_definition_script_vars/command.sh
Finished oligourea_design in 78 seconds [~ 149 test (18.60174781523096%) started, 652 in queue, 48 running]
Running Test iphold
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/iphold/command.sh
Finished mp_span_ang_ref2015_memb in 61 seconds [~ 150 test (18.726591760299627%) started, 651 in queue, 48 running]
Running Test interface_energy
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/interface_energy/command.sh
Finished test_degreaser in 235 seconds [~ 151 test (18.85143570536829%) started, 650 in queue, 48 running]
Running Test interaction_graph_summary_metric
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/interaction_graph_summary_metric/command.sh
Finished mp_quick_relax_ref2015_memb in 61 seconds [~ 152 test (18.976279650436954%) started, 649 in queue, 48 running]
Running Test hydrate_relax
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hydrate_relax/command.sh
Finished multistage_rosetta_scripts in 82 seconds [~ 153 test (19.10112359550562%) started, 648 in queue, 48 running]
Running Test hydrate
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hydrate/command.sh
Finished mmtfIO_score_test in 60 seconds [~ 154 test (19.22596754057428%) started, 647 in queue, 48 running]
Running Test homodimer_fnd_ref2015_memb
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/homodimer_fnd_ref2015_memb/command.sh
Finished simple_cycpep_predict_square_pyramidal_metal in 249 seconds [~ 155 test (19.350811485642947%) started, 646 in queue, 48 running]
Running Test helical_bundle_predict_skipping_residues
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_skipping_residues/command.sh
Finished ligand_motif_identification in 34 seconds [~ 156 test (19.475655430711612%) started, 645 in queue, 48 running]
Running Test helical_bundle_predict_sequence
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_sequence/command.sh
Finished mp_ligand_interface in 76 seconds [~ 157 test (19.600499375780274%) started, 644 in queue, 48 running]
Running Test helical_bundle_predict_psipred_with_helix_globals
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_psipred_with_helix_globals/command.sh
Finished simple_cycpep_predict_trigonal_planar_metal in 257 seconds [~ 158 test (19.72534332084894%) started, 643 in queue, 48 running]
Running Test helical_bundle_predict_psipred
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict_psipred/command.sh
Finished interface_energy in 31 seconds [~ 159 test (19.850187265917604%) started, 642 in queue, 48 running]
Running Test helical_bundle_predict
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_predict/command.sh
Finished ligand_motif_discovery in 52 seconds [~ 160 test (19.975031210986266%) started, 641 in queue, 48 running]
Running Test hbnet_energy_symm
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbnet_energy_symm/command.sh
Finished simple_cycpep_predict_octahedral_metal in 275 seconds [~ 161 test (20.09987515605493%) started, 640 in queue, 48 running]
Running Test hbnet_energy_rosettascripts_linear
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbnet_energy_rosettascripts_linear/command.sh
Finished molfile_to_params_polymer in 96 seconds [~ 162 test (20.224719101123597%) started, 639 in queue, 48 running]
Running Test hbnet_energy
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbnet_energy/command.sh
Finished mhc_epitope_nmer_preload in 96 seconds [~ 163 test (20.34956304619226%) started, 638 in queue, 48 running]
Running Test glycopeptidedocking_diglyco_long
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycopeptidedocking_diglyco_long/command.sh
Finished swm_general_polymer_sampler in 289 seconds [~ 164 test (20.474406991260924%) started, 637 in queue, 48 running]
Running Test glycopeptidedocking
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycopeptidedocking/command.sh
Finished simple_metrics in 299 seconds [~ 165 test (20.59925093632959%) started, 636 in queue, 48 running]
Running Test glycomutagenesis
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycomutagenesis/command.sh
Finished ncbb_packer_palette in 149 seconds [~ 166 test (20.72409488139825%) started, 635 in queue, 48 running]
Running Test glycan_sequon_scanner
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycan_sequon_scanner/command.sh
Finished mhc_epitope in 113 seconds [~ 167 test (20.848938826466917%) started, 634 in queue, 48 running]
Running Test glycan_refinment
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycan_refinment/command.sh
Finished rna_denovo_new_FT_2in_dens in 228 seconds [~ 168 test (20.973782771535582%) started, 633 in queue, 48 running]
Running Test glycan_anomers
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycan_anomers/command.sh
Finished loop_grower_N_term_symm in 94 seconds [~ 169 test (21.098626716604244%) started, 632 in queue, 48 running]
Running Test genkic_sugars
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_sugars/command.sh
Finished rna_denovo_fragment_homology_exclusion in 245 seconds [~ 170 test (21.22347066167291%) started, 631 in queue, 48 running]
Running Test ga_ligand_dock_macrocycle
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ga_ligand_dock_macrocycle/command.sh
Finished mp_dock_ensemble in 147 seconds [~ 171 test (21.348314606741575%) started, 630 in queue, 48 running]
Running Test ga_ligand_dock_amino_acid
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ga_ligand_dock_amino_acid/command.sh
Finished rna_denovo_symm_hack in 268 seconds [~ 172 test (21.473158551810236%) started, 629 in queue, 48 running]
Running Test ga_ligand_dock
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ga_ligand_dock/command.sh
Finished make_mainchain_potential in 140 seconds [~ 173 test (21.5980024968789%) started, 628 in queue, 48 running]
No correct command.sh file found for features_pdb_mpi. Skipping.
Running Test fold_from_loops
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fold_from_loops/command.sh
Finished ligand_dock_cholesterol in 125 seconds [~ 175 test (21.84769038701623%) started, 626 in queue, 48 running]
Running Test favor_coupling_tensor
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/favor_coupling_tensor/command.sh
Finished netcharge_design_symm in 206 seconds [~ 176 test (21.972534332084894%) started, 625 in queue, 48 running]
Running Test fast_relax_scripts
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fast_relax_scripts/command.sh
Finished interaction_graph_summary_metric in 132 seconds [~ 177 test (22.09737827715356%) started, 624 in queue, 48 running]
Running Test farnesyl
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/farnesyl/command.sh
Finished repeat_relax in 281 seconds [~ 178 test (22.22222222222222%) started, 623 in queue, 48 running]
Running Test farfar_mrna
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/farfar_mrna/command.sh
Finished glycan_sequon_scanner in 69 seconds [~ 179 test (22.347066167290887%) started, 622 in queue, 48 running]
Running Test explicit_membrane
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/explicit_membrane/command.sh
Finished glycan_refinment in 72 seconds [~ 180 test (22.471910112359552%) started, 621 in queue, 48 running]
Running Test exclusively_shared_jumps
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/exclusively_shared_jumps/command.sh
Finished mixed_monte_carlo in 198 seconds [~ 181 test (22.596754057428214%) started, 620 in queue, 48 running]
No correct command.sh file found for esm_model_perplexity. Skipping.
Running Test evolution
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/evolution/command.sh
Finished homodimer_fnd_ref2015_memb in 153 seconds [~ 183 test (22.846441947565545%) started, 618 in queue, 48 running]
Running Test enzscore_filter_metal_sym
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enzscore_filter_metal_sym/command.sh
Finished glycan_anomers in 98 seconds [~ 184 test (22.971285892634207%) started, 617 in queue, 48 running]
Running Test enzscore_filter_metal
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enzscore_filter_metal/command.sh
Finished mp_domain_assembly in 225 seconds [~ 185 test (23.096129837702872%) started, 616 in queue, 48 running]
Running Test enzscore_filter_ligand
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enzscore_filter_ligand/command.sh
Finished iphold in 181 seconds [~ 186 test (23.220973782771537%) started, 615 in queue, 48 running]
Running Test enzscore_filter_dimetal_sym
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enzscore_filter_dimetal_sym/command.sh
Finished hydrate in 172 seconds [~ 187 test (23.3458177278402%) started, 614 in queue, 48 running]
Running Test enzscore_filter_dimetal
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enzscore_filter_dimetal/command.sh
Finished exclusively_shared_jumps in 63 seconds [~ 188 test (23.470661672908864%) started, 613 in queue, 48 running]
Running Test enumerative_sampling
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enumerative_sampling/command.sh
Finished simple_cycpep_predict_tetrahedral_metal in 461 seconds [~ 189 test (23.59550561797753%) started, 612 in queue, 48 running]
Running Test energy_based_clustering_alpha_aa_scorefile
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/energy_based_clustering_alpha_aa_scorefile/command.sh
Finished enzscore_filter_ligand in 59 seconds [~ 190 test (23.72034956304619%) started, 611 in queue, 48 running]
Running Test energy_based_clustering_alpha_aa_dihedral
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/energy_based_clustering_alpha_aa_dihedral/command.sh
Finished rosetta_scripts_jd3 in 426 seconds [~ 191 test (23.845193508114857%) started, 610 in queue, 48 running]
Running Test energy_based_clustering_alpha_aa_bin_analysis
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/energy_based_clustering_alpha_aa_bin_analysis/command.sh
Finished enzscore_filter_metal_sym in 80 seconds [~ 192 test (23.970037453183522%) started, 609 in queue, 48 running]
Running Test energy_based_clustering_alpha_aa
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/energy_based_clustering_alpha_aa/command.sh
Finished enzscore_filter_metal in 78 seconds [~ 193 test (24.094881398252184%) started, 608 in queue, 48 running]
Running Test duplicate_header_guards
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/duplicate_header_guards/command.sh
Finished duplicate_header_guards in 3 seconds [~ 194 test (24.21972534332085%) started, 607 in queue, 48 running]
Running Test drrafter_setup_simple
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup_simple/command.sh
Finished drrafter_setup_simple in 0 seconds [~ 195 test (24.344569288389515%) started, 606 in queue, 48 running]
Running Test drrafter_setup_ribosome_test
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup_ribosome_test/command.sh
Finished favor_coupling_tensor in 138 seconds [~ 196 test (24.469413233458177%) started, 605 in queue, 48 running]
Running Test drrafter_setup_real_test_H_no_init
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup_real_test_H_no_init/command.sh
Finished fold_from_loops in 150 seconds [~ 197 test (24.594257178526842%) started, 604 in queue, 48 running]
Running Test drrafter_setup_real_test_H
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup_real_test_H/command.sh
Finished drrafter_setup_ribosome_test in 6 seconds [~ 198 test (24.719101123595507%) started, 603 in queue, 48 running]
Running Test drrafter_setup_protein_dock
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup_protein_dock/command.sh
Finished drrafter_setup_protein_dock in 0 seconds [~ 199 test (24.84394506866417%) started, 602 in queue, 48 running]
Running Test drrafter_setup_build_missing
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup_build_missing/command.sh
Finished drrafter_setup_real_test_H_no_init in 6 seconds [~ 200 test (24.968789013732835%) started, 601 in queue, 48 running]
Finished drrafter_setup_build_missing in 0 seconds [~ 200 test (24.968789013732835%) started, 601 in queue, 47 running]
Running Test drrafter_run
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_run/command.sh
Running Test drrafter_setup
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_setup/command.sh
Finished drrafter_setup in 0 seconds [~ 202 test (25.21847690387016%) started, 599 in queue, 48 running]
Running Test drrafter_error_estimation
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/drrafter_error_estimation/command.sh
Finished enzscore_filter_dimetal_sym in 83 seconds [~ 203 test (25.343320848938827%) started, 598 in queue, 48 running]
Running Test dihedral_constraint_generator
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dihedral_constraint_generator/command.sh
Finished energy_based_clustering_alpha_aa_scorefile in 32 seconds [~ 204 test (25.46816479400749%) started, 597 in queue, 48 running]
Running Test dgdp_script
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dgdp_script/command.sh
Finished enzscore_filter_dimetal in 79 seconds [~ 205 test (25.593008739076154%) started, 596 in queue, 48 running]
Running Test dgdp_aio
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dgdp_aio/command.sh
Finished drrafter_setup_real_test_H in 6 seconds [~ 206 test (25.71785268414482%) started, 595 in queue, 48 running]
Running Test design_w_custom_palette-RNA
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/design_w_custom_palette-RNA/command.sh
Finished energy_based_clustering_alpha_aa_dihedral in 32 seconds [~ 207 test (25.84269662921348%) started, 594 in queue, 48 running]
Running Test design_w_custom_palette-NCAAs
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/design_w_custom_palette-NCAAs/command.sh
Finished hbnet_energy_symm in 231 seconds [~ 208 test (25.967540574282147%) started, 593 in queue, 48 running]
Running Test design_w_custom_palette-CAAs
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/design_w_custom_palette-CAAs/command.sh
Finished drrafter_error_estimation in 10 seconds [~ 209 test (26.092384519350812%) started, 592 in queue, 48 running]
Running Test design_glycans
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/design_glycans/command.sh
Finished energy_based_clustering_alpha_aa_bin_analysis in 32 seconds [~ 210 test (26.217228464419474%) started, 591 in queue, 48 running]
Running Test dehydro_aa_patch
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dehydro_aa_patch/command.sh
Finished energy_based_clustering_alpha_aa in 31 seconds [~ 211 test (26.34207240948814%) started, 590 in queue, 48 running]
Running Test ddG_sym
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ddG_sym/command.sh
Finished simple_cycpep_predict_trigonal_pyramidal_metal in 513 seconds [~ 212 test (26.466916354556805%) started, 589 in queue, 48 running]
Running Test database_md5
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/database_md5/command.sh
Finished genkic_sugars in 214 seconds [~ 213 test (26.591760299625467%) started, 588 in queue, 48 running]
Running Test cycpep_rigid_body_permutation_mover
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cycpep_rigid_body_permutation_mover/command.sh
Finished simple_metrics_per_residue in 542 seconds [~ 214 test (26.716604244694132%) started, 587 in queue, 48 running]
Running Test cycpep_rdkit_metric
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cycpep_rdkit_metric/command.sh
Finished farfar_mrna in 172 seconds [~ 215 test (26.841448189762797%) started, 586 in queue, 48 running]
Running Test cycpep_design_pipeline
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cycpep_design_pipeline/command.sh
Finished rna_denovo_new_libs in 473 seconds [~ 216 test (26.96629213483146%) started, 585 in queue, 48 running]
Running Test custom_basetype_packer_palette
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/custom_basetype_packer_palette/command.sh
Finished enumerative_sampling in 106 seconds [~ 217 test (27.091136079900124%) started, 584 in queue, 48 running]
Running Test crosslinkermover_trigonal_pyramidal_c3_symm
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_trigonal_pyramidal_c3_symm/command.sh
Finished mp_domain_assembly_FtsQ in 375 seconds [~ 218 test (27.21598002496879%) started, 583 in queue, 48 running]
Running Test crosslinkermover_trigonal_pyramidal
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_trigonal_pyramidal/command.sh
Finished dihedral_constraint_generator in 60 seconds [~ 219 test (27.34082397003745%) started, 582 in queue, 48 running]
Running Test crosslinkermover_trigonal_planar_c3_symm
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_trigonal_planar_c3_symm/command.sh
Finished design_w_custom_palette-RNA in 58 seconds [~ 220 test (27.465667915106117%) started, 581 in queue, 48 running]
Running Test crosslinkermover_trigonal_planar
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_trigonal_planar/command.sh
Finished voids_penalty_energy_design_symmetry in 558 seconds [~ 221 test (27.590511860174782%) started, 580 in queue, 48 running]
Running Test crosslinkermover_tma_symm
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_tma_symm/command.sh
Finished job_definition_script_vars in 336 seconds [~ 222 test (27.715355805243444%) started, 579 in queue, 48 running]
Running Test crosslinkermover_tma
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_tma/command.sh
Finished dehydro_aa_patch in 59 seconds [~ 223 test (27.84019975031211%) started, 578 in queue, 48 running]
Running Test crosslinkermover_thioether
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_thioether/command.sh
Finished swm_dna_loop in 585 seconds [~ 224 test (27.965043695380775%) started, 577 in queue, 48 running]
Running Test crosslinkermover_tetrahedral_metal_d2_symmetry
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal_d2_symmetry/command.sh
Finished database_md5 in 95 seconds [~ 225 test (28.089887640449437%) started, 576 in queue, 48 running]
Running Test crosslinkermover_tetrahedral_metal_c2_symmetry
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal_c2_symmetry/command.sh
Finished custom_basetype_packer_palette in 66 seconds [~ 226 test (28.214731585518102%) started, 575 in queue, 48 running]
Running Test crosslinkermover_tetrahedral_metal_asp
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal_asp/command.sh
Finished ga_ligand_dock_amino_acid in 280 seconds [~ 227 test (28.339575530586767%) started, 574 in queue, 48 running]
Running Test crosslinkermover_tetrahedral_metal
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_tetrahedral_metal/command.sh
Finished crosslinkermover_thioether in 73 seconds [~ 228 test (28.46441947565543%) started, 573 in queue, 48 running]
Running Test crosslinkermover_square_pyramidal
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_square_pyramidal/command.sh
Finished netcharge_design in 490 seconds [~ 229 test (28.589263420724095%) started, 572 in queue, 48 running]
Running Test crosslinkermover_square_planar_d2_symm
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_square_planar_d2_symm/command.sh
Finished crosslinkermover_trigonal_pyramidal_c3_symm in 97 seconds [~ 230 test (28.71410736579276%) started, 571 in queue, 48 running]
Running Test crosslinkermover_square_planar
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_square_planar/command.sh
Finished design_w_custom_palette-CAAs in 142 seconds [~ 231 test (28.83895131086142%) started, 570 in queue, 48 running]
Running Test crosslinkermover_octahedral_s2_symm
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_octahedral_s2_symm/command.sh
Finished design_w_custom_palette-NCAAs in 150 seconds [~ 232 test (28.963795255930087%) started, 569 in queue, 48 running]
Running Test crosslinkermover_octahedral
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_octahedral/command.sh
Finished crosslinkermover_trigonal_planar_c3_symm in 97 seconds [~ 233 test (29.088639200998752%) started, 568 in queue, 48 running]
Running Test crosslinkermover_methyllanthionine
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_methyllanthionine/command.sh
Finished polyaramid_test_trivial in 554 seconds [~ 234 test (29.213483146067414%) started, 567 in queue, 48 running]
Running Test crosslinkermover_lanthionine
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_lanthionine/command.sh
Finished crosslinkermover_trigonal_planar in 118 seconds [~ 235 test (29.33832709113608%) started, 566 in queue, 48 running]
Running Test crosslinkermover_1_4_bbmb_s2_symm
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_1_4_bbmb_s2_symm/command.sh
Finished crosslinkermover_tetrahedral_metal in 66 seconds [~ 236 test (29.463171036204745%) started, 565 in queue, 48 running]
Running Test crosslinkermover_1_4_bbmb_c2_symmetry
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_1_4_bbmb_c2_symmetry/command.sh
Finished evolution in 294 seconds [~ 237 test (29.588014981273407%) started, 564 in queue, 48 running]
Running Test crosslinkermover_1_4_bbmb_asymm
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crosslinkermover_1_4_bbmb_asymm/command.sh
Finished crosslinkermover_tetrahedral_metal_asp in 73 seconds [~ 238 test (29.712858926342072%) started, 563 in queue, 48 running]
Running Test create_sequence_motif
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/create_sequence_motif/command.sh
Finished crosslinkermover_trigonal_pyramidal in 130 seconds [~ 239 test (29.837702871410738%) started, 562 in queue, 48 running]
Running Test create_clash-based_repack_shell
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/create_clash-based_repack_shell/command.sh
Finished cycpep_rigid_body_permutation_mover in 209 seconds [~ 240 test (29.9625468164794%) started, 561 in queue, 48 running]
Running Test crankshaft_flip
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crankshaft_flip/command.sh
Finished crosslinkermover_methyllanthionine in 85 seconds [~ 241 test (30.087390761548065%) started, 560 in queue, 48 running]
Running Test count_cycpep_sequences
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/count_cycpep_sequences/command.sh
Finished crosslinkermover_lanthionine in 67 seconds [~ 242 test (30.21223470661673%) started, 559 in queue, 48 running]
Running Test control_flow_rs
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/control_flow_rs/command.sh
Finished hydrate_relax in 505 seconds [~ 243 test (30.337078651685392%) started, 558 in queue, 48 running]
Running Test constraints_metric
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/constraints_metric/command.sh
Finished rna_denovo_dna_bridge in 674 seconds [~ 244 test (30.461922596754057%) started, 557 in queue, 48 running]
Finished create_sequence_motif in 70 seconds [~ 244 test (30.461922596754057%) started, 557 in queue, 47 running]
Running Test coenzymes
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/coenzymes/command.sh
Running Test code_template_tests_citations
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/code_template_tests_citations/command.sh
'database/citations/rosetta_citations.txt' -> 'database/citations/rosetta_citations.original.txt'
First script ran successfully.
Second script ran successfully.
Output matches expectation.
Finished code_template_tests_citations in 6 seconds [~ 246 test (30.711610486891384%) started, 555 in queue, 48 running]
Running Test coarse_rna_scoring
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/coarse_rna_scoring/command.sh
Finished create_clash-based_repack_shell in 80 seconds [~ 247 test (30.83645443196005%) started, 554 in queue, 48 running]
Running Test cmaes_minimizer
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cmaes_minimizer/command.sh
Finished explicit_membrane in 397 seconds [~ 248 test (30.961298377028715%) started, 553 in queue, 48 running]
Running Test cleanAlignment
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cleanAlignment/command.sh
Finished swm_rna_base_pair_constraints in 778 seconds [~ 249 test (31.086142322097377%) started, 552 in queue, 48 running]
Running Test cl_complex_rescore
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cl_complex_rescore/command.sh
Finished farnesyl in 415 seconds [~ 250 test (31.210986267166042%) started, 551 in queue, 48 running]
Running Test ccd_ends_graft_mover_rs
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ccd_ends_graft_mover_rs/command.sh
Finished cycpep_rdkit_metric in 242 seconds [~ 251 test (31.335830212234708%) started, 550 in queue, 48 running]
Running Test case_sensitive_filenames
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/case_sensitive_filenames/command.sh
Finished coenzymes in 30 seconds [~ 252 test (31.46067415730337%) started, 549 in queue, 48 running]
Running Test cartesianddg
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cartesianddg/command.sh
/usr/bin/git
200d5f9a7d8cdd7afdd078f156da6b5a7d97543f
Finished case_sensitive_filenames in 0 seconds [~ 253 test (31.585518102372035%) started, 548 in queue, 48 running]
Running Test cart_min_glycans
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cart_min_glycans/command.sh
Finished cycpep_design_pipeline in 244 seconds [~ 254 test (31.7103620474407%) started, 547 in queue, 48 running]
Running Test buried_unsat_voids_hbnet_design_symm
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/buried_unsat_voids_hbnet_design_symm/command.sh
Finished helical_bundle_predict in 537 seconds [~ 255 test (31.835205992509362%) started, 546 in queue, 48 running]
Running Test buried_unsat_voids_hbnet_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/buried_unsat_voids_hbnet_design/command.sh
Finished cl_complex_rescore in 31 seconds [~ 256 test (31.960049937578027%) started, 545 in queue, 48 running]
No correct command.sh file found for bcl_fragment_mutate. Skipping.
No correct command.sh file found for basic_gcn_tensorflow_test. Skipping.
Running Test burial_measure_centroid
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/burial_measure_centroid/command.sh
Finished glycomutagenesis in 511 seconds [~ 259 test (32.33458177278402%) started, 542 in queue, 48 running]
Running Test balancedKIC
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/balancedKIC/command.sh
Finished burial_measure_centroid in 1 seconds [~ 260 test (32.45942571785268%) started, 541 in queue, 48 running]
Running Test autosetup_metals_centroid
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/autosetup_metals_centroid/command.sh
Finished cmaes_minimizer in 48 seconds [~ 261 test (32.58426966292135%) started, 540 in queue, 48 running]
Running Test auto-drrafter_setup_run_R3
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/auto-drrafter_setup_run_R3/command.sh
Finished helical_bundle_predict_sequence in 563 seconds [~ 262 test (32.70911360799001%) started, 539 in queue, 48 running]
Running Test auto-drrafter_setup_run_R2
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/auto-drrafter_setup_run_R2/command.sh
Finished swm_dna_bridge in 822 seconds [~ 263 test (32.833957553058674%) started, 538 in queue, 48 running]
Running Test auto-drrafter_setup_run_R1
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/auto-drrafter_setup_run_R1/command.sh
Finished rnp_ddg_calc_wt in 765 seconds [~ 264 test (32.95880149812734%) started, 537 in queue, 48 running]
Running Test auto-drrafter_final_results
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/auto-drrafter_final_results/command.sh
Finished cartesianddg in 48 seconds [~ 265 test (33.083645443196005%) started, 536 in queue, 48 running]
Running Test antibody_designer_xml
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_designer_xml/command.sh
Finished coarse_rna_scoring in 75 seconds [~ 266 test (33.20848938826467%) started, 535 in queue, 48 running]
No correct command.sh file found for antibody_cc. Skipping.
Running Test antibody_designer_camelid
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_designer_camelid/command.sh
Finished crosslinkermover_1_4_bbmb_c2_symmetry in 165 seconds [~ 268 test (33.458177278402%) started, 533 in queue, 48 running]
No correct command.sh file found for abinitio_with_trRosetta. Skipping.
Running Test ambiguous_nmr_distance_constraint
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ambiguous_nmr_distance_constraint/command.sh
Finished helical_bundle_predict_skipping_residues in 602 seconds [~ 270 test (33.70786516853933%) started, 531 in queue, 48 running]
Running Test SSElementSelector
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/SSElementSelector/command.sh
Finished helical_bundle_predict_psipred_with_helix_globals in 602 seconds [~ 271 test (33.83270911360799%) started, 530 in queue, 48 running]
Running Test SID_rescore
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/SID_rescore/command.sh
Finished rna_denovo_lariat in 786 seconds [~ 272 test (33.95755305867665%) started, 529 in queue, 48 running]
Running Test SID_ERMS_prediction
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/SID_ERMS_prediction/command.sh
Finished constraints_metric in 124 seconds [~ 273 test (34.08239700374532%) started, 528 in queue, 48 running]
Running Test RunSimpleMetric_b_factor_test
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/RunSimpleMetric_b_factor_test/command.sh
Finished autosetup_metals_centroid in 61 seconds [~ 274 test (34.20724094881398%) started, 527 in queue, 48 running]
Running Test ResidueDisorder
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ResidueDisorder/command.sh
Finished SID_rescore in 36 seconds [~ 275 test (34.332084893882644%) started, 526 in queue, 48 running]
No correct command.sh file found for PTMPrediction. Skipping.
Running Test PolarDesign2019
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/PolarDesign2019/command.sh
Finished hbnet_energy_rosettascripts_linear in 618 seconds [~ 277 test (34.581772784019975%) started, 524 in queue, 48 running]
Running Test N-terminal_acetylation
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/N-terminal_acetylation/command.sh
Finished ResidueDisorder in 24 seconds [~ 278 test (34.70661672908864%) started, 523 in queue, 48 running]
Running Test InterfaceAnalyzer_metrics
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_metrics/command.sh
Finished cart_min_glycans in 114 seconds [~ 279 test (34.831460674157306%) started, 522 in queue, 48 running]
Running Test InterfaceAnalyzer_ligand
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_ligand/command.sh
Finished helical_bundle_predict_psipred in 643 seconds [~ 280 test (34.95630461922597%) started, 521 in queue, 48 running]
Running Test HDXEnergy
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/HDXEnergy/command.sh
Finished ambiguous_nmr_distance_constraint in 60 seconds [~ 281 test (35.08114856429463%) started, 520 in queue, 48 running]
Finished N-terminal_acetylation in 9 seconds [~ 281 test (35.08114856429463%) started, 520 in queue, 47 running]
Running Test FavorSequenceProfileMover
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/FavorSequenceProfileMover/command.sh
Running Test DumpTrajectoryEnergy_packing
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DumpTrajectoryEnergy_packing/command.sh
Finished crankshaft_flip in 175 seconds [~ 283 test (35.33083645443196%) started, 518 in queue, 48 running]
Running Test DumpTrajectoryEnergy
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DumpTrajectoryEnergy/command.sh
Finished SSElementSelector in 59 seconds [~ 284 test (35.45568039950062%) started, 517 in queue, 48 running]
Running Test DNA_methylation
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DNA_methylation/command.sh
Finished auto-drrafter_final_results in 88 seconds [~ 285 test (35.58052434456929%) started, 516 in queue, 48 running]
Running Test ContactMolecularSurface
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ContactMolecularSurface/command.sh
Finished crosslinkermover_octahedral_s2_symm in 276 seconds [~ 286 test (35.70536828963795%) started, 515 in queue, 48 running]
Running Test CCS_PARCS
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/CCS_PARCS/command.sh
Finished DNA_methylation in 12 seconds [~ 287 test (35.830212234706615%) started, 514 in queue, 48 running]
Running Test BFactorSelector
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/BFactorSelector/command.sh
Finished glycopeptidedocking in 634 seconds [~ 288 test (35.95505617977528%) started, 513 in queue, 48 running]
Running Test AlignPDBInfoToSequences
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/AlignPDBInfoToSequences/command.sh
Finished CCS_PARCS in 9 seconds [~ 289 test (36.079900124843945%) started, 512 in queue, 48 running]
Running Test mm_params
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mm_params/command.sh
Finished balancedKIC in 121 seconds [~ 290 test (36.20474406991261%) started, 511 in queue, 48 running]
Running Test add_helix_sequence_constraints
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/add_helix_sequence_constraints/command.sh
Finished antibody_designer_camelid in 97 seconds [~ 291 test (36.329588014981276%) started, 510 in queue, 48 running]
Running Test autoNOE_rosetta
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/autoNOE_rosetta/command.sh
Finished InterfaceAnalyzer_ligand in 36 seconds [~ 292 test (36.45443196004994%) started, 509 in queue, 48 running]
Running Test bundlegridsampler_composition_energy
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_composition_energy/command.sh
Finished crosslinkermover_square_planar_d2_symm in 297 seconds [~ 293 test (36.5792759051186%) started, 508 in queue, 48 running]
Finished RunSimpleMetric_b_factor_test in 72 seconds [~ 293 test (36.5792759051186%) started, 508 in queue, 47 running]
Running Test ligand_dock_ensemble
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_dock_ensemble/command.sh
Running Test add_helix_sequence_constraints_advanced_setup
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/add_helix_sequence_constraints_advanced_setup/command.sh
Finished crosslinkermover_tma_symm in 390 seconds [~ 295 test (36.82896379525593%) started, 506 in queue, 48 running]
Running Test antibody_designer
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_designer/command.sh
Finished cleanAlignment in 193 seconds [~ 296 test (36.95380774032459%) started, 505 in queue, 48 running]
Running Test glycan_tree_relax
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycan_tree_relax/command.sh
Finished FavorSequenceProfileMover in 62 seconds [~ 297 test (37.07865168539326%) started, 504 in queue, 48 running]
Running Test ppi_v3_suiteC
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteC/command.sh
Finished DumpTrajectoryEnergy in 63 seconds [~ 298 test (37.20349563046192%) started, 503 in queue, 48 running]
Running Test swa_rna_erraser
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_erraser/command.sh
Finished DumpTrajectoryEnergy_packing in 69 seconds [~ 299 test (37.328339575530585%) started, 502 in queue, 48 running]
Running Test swm_rna_srl_triplet
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_srl_triplet/command.sh
Finished hbnet_energy in 698 seconds [~ 300 test (37.453183520599254%) started, 501 in queue, 48 running]
Running Test dna_interface_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dna_interface_design/command.sh
Finished ContactMolecularSurface in 64 seconds [~ 301 test (37.578027465667915%) started, 500 in queue, 48 running]
Running Test ppi_v3_suiteF
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteF/command.sh
Finished InterfaceAnalyzer_metrics in 83 seconds [~ 302 test (37.70287141073658%) started, 499 in queue, 48 running]
Running Test validate_database
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/validate_database/command.sh
Finished voids_penalty_energy_design in 986 seconds [~ 303 test (37.827715355805246%) started, 498 in queue, 48 running]
Running Test ddG_of_mutation
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ddG_of_mutation/command.sh
Finished HDXEnergy in 86 seconds [~ 304 test (37.95255930087391%) started, 497 in queue, 48 running]
Running Test swa_protein_loop_sampler
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_loop_sampler/command.sh
Finished crosslinkermover_tetrahedral_metal_c2_symmetry in 378 seconds [~ 305 test (38.07740324594257%) started, 496 in queue, 48 running]
Running Test composition_energy_layers
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/composition_energy_layers/command.sh
Finished BFactorSelector in 68 seconds [~ 306 test (38.20224719101124%) started, 495 in queue, 48 running]
Running Test pertmin
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pertmin/command.sh
Finished SID_ERMS_prediction in 131 seconds [~ 307 test (38.3270911360799%) started, 494 in queue, 48 running]
Running Test bundlegridsampler_composition_energy_fract_range
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_composition_energy_fract_range/command.sh
Finished mm_params in 72 seconds [~ 308 test (38.45193508114856%) started, 493 in queue, 48 running]
Running Test fiber_diffraction
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fiber_diffraction/command.sh
Finished drrafter_run in 524 seconds [~ 309 test (38.57677902621723%) started, 492 in queue, 48 running]
Running Test simple_cycpep_predict
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict/command.sh
Finished control_flow_rs in 293 seconds [~ 310 test (38.70162297128589%) started, 491 in queue, 48 running]
Running Test swa_protein_combine_loops
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_combine_loops/command.sh
Finished buried_unsat_voids_hbnet_design in 237 seconds [~ 311 test (38.826466916354555%) started, 490 in queue, 48 running]
Running Test bundlegridsampler_copy_pitch
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_copy_pitch/command.sh
Finished count_cycpep_sequences in 304 seconds [~ 312 test (38.951310861423224%) started, 489 in queue, 48 running]
Running Test hotspot_hashing
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hotspot_hashing/command.sh
Finished crosslinkermover_tetrahedral_metal_d2_symmetry in 458 seconds [~ 313 test (39.076154806491886%) started, 488 in queue, 48 running]
Running Test coupled_moves
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/coupled_moves/command.sh
Finished ga_ligand_dock_macrocycle in 747 seconds [~ 314 test (39.20099875156055%) started, 487 in queue, 48 running]
Running Test app_exception_handling
ulimit -t 7200 && bash /home/benchmark/rosetta/tests/integration/new/app_exception_handling/command.sh
Finished fast_relax_scripts in 733 seconds [~ 315 test (39.325842696629216%) started, 486 in queue, 48 running]
Running Test rna_denovo_base_pair_constraints
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_base_pair_constraints/command.sh
Finished crosslinkermover_1_4_bbmb_s2_symm in 417 seconds [~ 316 test (39.45068664169788%) started, 485 in queue, 48 running]
Running Test motif_dna_packer_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/motif_dna_packer_design/command.sh
Finished AlignPDBInfoToSequences in 178 seconds [~ 317 test (39.57553058676654%) started, 484 in queue, 48 running]
Running Test simple_cycpep_predict_anglelength
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_anglelength/command.sh
Finished crosslinkermover_1_4_bbmb_asymm in 430 seconds [~ 318 test (39.70037453183521%) started, 483 in queue, 48 running]
Running Test nonideal_rtmin
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/nonideal_rtmin/command.sh
Finished ddG_sym in 669 seconds [~ 319 test (39.82521847690387%) started, 482 in queue, 48 running]
Running Test mirror_symm
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mirror_symm/command.sh
Finished auto-drrafter_setup_run_R3 in 372 seconds [~ 320 test (39.95006242197253%) started, 481 in queue, 48 running]
Running Test simple_cycpep_predict_angle
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_angle/command.sh
Finished crosslinkermover_square_pyramidal in 548 seconds [~ 321 test (40.0749063670412%) started, 480 in queue, 48 running]
Running Test simple_cycpep_predict_cartesian
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_cartesian/command.sh
Finished design_glycans in 685 seconds [~ 322 test (40.19975031210986%) started, 479 in queue, 48 running]
Running Test fiber_diffraction_fad
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fiber_diffraction_fad/command.sh
Finished autoNOE_rosetta in 259 seconds [~ 323 test (40.324594257178525%) started, 478 in queue, 48 running]
Running Test rna_puzzle12_P5P6P7_DMS
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_puzzle12_P5P6P7_DMS/command.sh
Finished swa_rna_erraser in 245 seconds [~ 324 test (40.449438202247194%) started, 477 in queue, 48 running]
Running Test ddG_ensemble
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ddG_ensemble/command.sh
Finished crosslinkermover_square_planar in 576 seconds [~ 325 test (40.574282147315856%) started, 476 in queue, 48 running]
Running Test SnugDock
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/SnugDock/command.sh
Finished ga_ligand_dock in 905 seconds [~ 326 test (40.69912609238452%) started, 475 in queue, 48 running]
Running Test rs_loophash
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rs_loophash/command.sh
Finished rnp_ddg_calc_mut in 1187 seconds [~ 327 test (40.823970037453186%) started, 474 in queue, 48 running]
Running Test hbnet_asymm
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbnet_asymm/command.sh
Finished auto-drrafter_setup_run_R2 in 459 seconds [~ 328 test (40.94881398252185%) started, 473 in queue, 48 running]
Running Test swa_protein_CCDclose
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_CCDclose/command.sh
Finished swa_protein_combine_loops in 301 seconds [~ 329 test (41.07365792759051%) started, 472 in queue, 48 running]
Running Test stepwise_lores
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/stepwise_lores/command.sh
Finished swa_protein_loop_sampler in 372 seconds [~ 330 test (41.19850187265918%) started, 471 in queue, 48 running]
Running Test rosetta_scripts_loops
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosetta_scripts_loops/command.sh
Finished simple_cycpep_predict in 344 seconds [~ 331 test (41.32334581772784%) started, 470 in queue, 48 running]
Running Test flexpepdock
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/flexpepdock/command.sh
Finished dna_interface_design in 384 seconds [~ 332 test (41.4481897627965%) started, 469 in queue, 48 running]
Running Test simple_glycosylation
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_glycosylation/command.sh
Finished antibody_designer_xml in 533 seconds [~ 333 test (41.57303370786517%) started, 468 in queue, 48 running]
Finished stepwise_lores in 33 seconds [~ 333 test (41.57303370786517%) started, 468 in queue, 47 running]
Running Test simple_cycpep_predict_tbmb
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_tbmb/command.sh
Running Test simple_cycpep_predict_setting
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_setting/command.sh
Finished buried_unsat_voids_hbnet_design_symm in 584 seconds [~ 335 test (41.822721598002495%) started, 466 in queue, 48 running]
Running Test glycan_relax
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycan_relax/command.sh
Finished rnp_ddg_relax_command_2 in 1326 seconds [~ 336 test (41.947565543071164%) started, 465 in queue, 48 running]
Running Test swa_rna_gagu_09_sample_virtual_ribose
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_09_sample_virtual_ribose/command.sh
Finished app_exception_handling in 324 seconds [~ 337 test (42.072409488139826%) started, 464 in queue, 48 running]
Running Test vip
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/vip/command.sh
Finished motif_dna_packer_design in 309 seconds [~ 338 test (42.19725343320849%) started, 463 in queue, 48 running]
Running Test d_workflow
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/d_workflow/command.sh
Finished auto-drrafter_setup_run_R1 in 580 seconds [~ 339 test (42.32209737827716%) started, 462 in queue, 48 running]
Running Test test1_benchmark
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/test1_benchmark/command.sh
Finished crosslinkermover_tma in 842 seconds [~ 340 test (42.44694132334582%) started, 461 in queue, 48 running]
Running Test splice_in_4loops_shorter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_in_4loops_shorter/command.sh
Finished simple_cycpep_predict_anglelength in 341 seconds [~ 341 test (42.57178526841448%) started, 460 in queue, 48 running]
Running Test match_6cpa
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/match_6cpa/command.sh
Finished simple_cycpep_predict_angle in 267 seconds [~ 342 test (42.69662921348315%) started, 459 in queue, 48 running]
Running Test LoopAnalyzer
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/LoopAnalyzer/command.sh
Finished antibody_designer in 512 seconds [~ 343 test (42.82147315855181%) started, 458 in queue, 48 running]
Running Test perturb_helical_bundle_copying_pitch
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/perturb_helical_bundle_copying_pitch/command.sh
Finished glycopeptidedocking_diglyco_long in 1179 seconds [~ 344 test (42.94631710362047%) started, 457 in queue, 48 running]
Running Test antibody_H3
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_H3/command.sh
Finished validate_database in 515 seconds [~ 345 test (43.07116104868914%) started, 456 in queue, 48 running]
Running Test ligand_water_docking
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_water_docking/command.sh
Finished PolarDesign2019 in 608 seconds [~ 346 test (43.1960049937578%) started, 455 in queue, 48 running]
Running Test cyclization
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cyclization/command.sh
Finished bundlegridsampler_copy_pitch in 464 seconds [~ 347 test (43.320848938826465%) started, 454 in queue, 48 running]
Running Test relax_w_allatom_cst
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/relax_w_allatom_cst/command.sh
Finished rna_puzzle12_P5P6P7_DMS in 315 seconds [~ 348 test (43.445692883895134%) started, 453 in queue, 48 running]
Running Test mr_protocols
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mr_protocols/command.sh
Finished simple_cycpep_predict_cartesian in 341 seconds [~ 349 test (43.570536828963796%) started, 452 in queue, 48 running]
Running Test hbnet
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbnet/command.sh
Finished pertmin in 537 seconds [~ 350 test (43.69538077403246%) started, 451 in queue, 48 running]
Running Test supercharge
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/supercharge/command.sh
Finished simple_cycpep_predict_setting in 171 seconds [~ 351 test (43.82022471910113%) started, 450 in queue, 48 running]
Running Test glycosylation
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycosylation/command.sh
Finished splice_in_4loops_shorter in 155 seconds [~ 352 test (43.94506866416979%) started, 449 in queue, 48 running]
Running Test hybridization
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hybridization/command.sh
Finished glycosylation in 24 seconds [~ 353 test (44.06991260923845%) started, 448 in queue, 48 running]
Running Test AnchorFinder
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/AnchorFinder/command.sh
Finished bundlegridsampler_composition_energy_fract_range in 595 seconds [~ 354 test (44.19475655430712%) started, 447 in queue, 48 running]
Running Test rna_puzzle5_p2_GAAA_mini
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_puzzle5_p2_GAAA_mini/command.sh
Finished hbnet_asymm in 337 seconds [~ 355 test (44.31960049937578%) started, 446 in queue, 48 running]
Running Test rna_denovo
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo/command.sh
Finished SnugDock in 376 seconds [~ 356 test (44.44444444444444%) started, 445 in queue, 48 running]
Running Test jd2test_mmCIFin_PDBout
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jd2test_mmCIFin_PDBout/command.sh
Finished ccd_ends_graft_mover_rs in 820 seconds [~ 357 test (44.56928838951311%) started, 444 in queue, 48 running]
Running Test jd2test_mmCIFIO
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jd2test_mmCIFIO/command.sh
Finished fiber_diffraction_fad in 433 seconds [~ 358 test (44.694132334581774%) started, 443 in queue, 48 running]
Running Test hts_io
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hts_io/command.sh
Finished match_6cpa in 181 seconds [~ 359 test (44.818976279650435%) started, 442 in queue, 48 running]
Running Test secondary_structure_output
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/secondary_structure_output/command.sh
Finished rs_loophash in 387 seconds [~ 360 test (44.943820224719104%) started, 441 in queue, 48 running]
Running Test rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation/command.sh
Finished AnchorFinder in 72 seconds [~ 361 test (45.068664169787766%) started, 440 in queue, 48 running]
Running Test mp_symdock
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_symdock/command.sh
Finished rna_puzzle5_p2_GAAA_mini in 53 seconds [~ 362 test (45.19350811485643%) started, 439 in queue, 48 running]
Running Test swa_protein_prepack
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_prepack/command.sh
Finished ppi_v3_suiteF in 699 seconds [~ 363 test (45.3183520599251%) started, 438 in queue, 48 running]
Running Test range_relax_w_cst
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/range_relax_w_cst/command.sh
Finished crosslinkermover_octahedral in 1033 seconds [~ 364 test (45.44319600499376%) started, 437 in queue, 48 running]
Running Test generate_6Dloopclose
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/generate_6Dloopclose/command.sh
Finished simple_cycpep_predict_tbmb in 325 seconds [~ 365 test (45.56803995006242%) started, 436 in queue, 48 running]
Running Test splice_in_4loops_longer
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_in_4loops_longer/command.sh
Finished perturb_helical_bundle_copying_pitch in 237 seconds [~ 366 test (45.69288389513109%) started, 435 in queue, 48 running]
Running Test ligand_dock_script
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_dock_script/command.sh
Finished mirror_symm in 527 seconds [~ 367 test (45.81772784019975%) started, 434 in queue, 48 running]
Running Test ligand_database_io
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_database_io/command.sh
Finished dgdp_aio in 1217 seconds [~ 368 test (45.94257178526841%) started, 433 in queue, 48 running]
Running Test remodel_disulfides_rosettascripts
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/remodel_disulfides_rosettascripts/command.sh
Finished LoopAnalyzer in 314 seconds [~ 369 test (46.06741573033708%) started, 432 in queue, 48 running]
Running Test splice_out_L1_L2_shorter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_L1_L2_shorter/command.sh
Finished secondary_structure_output in 158 seconds [~ 370 test (46.192259675405744%) started, 431 in queue, 48 running]
Running Test ppi_v3_suiteB
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteB/command.sh
Finished swa_rna_gagu_09_sample_virtual_ribose in 421 seconds [~ 371 test (46.317103620474406%) started, 430 in queue, 48 running]
Running Test swm_build_full_model
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_build_full_model/command.sh
Finished ppi_v3_suiteC in 839 seconds [~ 372 test (46.441947565543074%) started, 429 in queue, 48 running]
Running Test swa_protein_cluster
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_cluster/command.sh
Finished hotspot_hashing in 777 seconds [~ 373 test (46.566791510611736%) started, 428 in queue, 48 running]
Running Test sdf_reader
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sdf_reader/command.sh
Finished splice_in_4loops_longer in 137 seconds [~ 374 test (46.6916354556804%) started, 427 in queue, 48 running]
Running Test splice_out_H1_H2_longer
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_H1_H2_longer/command.sh
Finished hts_io in 208 seconds [~ 375 test (46.81647940074907%) started, 426 in queue, 48 running]
Running Test UBQ_E2_thioester_extra_bodies
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/UBQ_E2_thioester_extra_bodies/command.sh
Finished swa_protein_cluster in 26 seconds [~ 376 test (46.94132334581773%) started, 425 in queue, 48 running]
Running Test mp_relax
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_relax/command.sh
Finished hbnet in 307 seconds [~ 377 test (47.06616729088639%) started, 424 in queue, 48 running]
Running Test match_1n9l
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/match_1n9l/command.sh
Finished fiber_diffraction in 835 seconds [~ 378 test (47.19101123595506%) started, 423 in queue, 48 running]
Running Test bundlegridsampler_epsilon
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_epsilon/command.sh
Finished ligand_water_docking in 341 seconds [~ 379 test (47.31585518102372%) started, 422 in queue, 48 running]
Running Test PDB_diagnostic
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/PDB_diagnostic/command.sh
Finished dgdp_script in 1346 seconds [~ 380 test (47.44069912609238%) started, 421 in queue, 48 running]
Running Test symm_disulfidize
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symm_disulfidize/command.sh
Finished flexpepdock in 479 seconds [~ 381 test (47.56554307116105%) started, 420 in queue, 48 running]
Running Test splice_out_H1_H2_shorter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_H1_H2_shorter/command.sh
Finished generate_6Dloopclose in 168 seconds [~ 382 test (47.690387016229714%) started, 419 in queue, 48 running]
Running Test splice_out_H1_H2_same
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_H1_H2_same/command.sh
Finished splice_out_L1_L2_shorter in 88 seconds [~ 383 test (47.815230961298376%) started, 418 in queue, 48 running]
Running Test fast_relax
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fast_relax/command.sh
Finished d_workflow in 466 seconds [~ 384 test (47.940074906367045%) started, 417 in queue, 48 running]
Running Test enzdes
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/enzdes/command.sh
Finished rna_denovo in 279 seconds [~ 385 test (48.064918851435706%) started, 416 in queue, 48 running]
Running Test batch_relax
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/batch_relax/command.sh
Finished hybridization in 315 seconds [~ 386 test (48.18976279650437%) started, 415 in queue, 48 running]
Running Test kinemage_grid_output
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/kinemage_grid_output/command.sh
Finished swm_build_full_model in 77 seconds [~ 387 test (48.31460674157304%) started, 414 in queue, 48 running]
Running Test remodel_helical_repeat
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/remodel_helical_repeat/command.sh
Finished PDB_diagnostic in 45 seconds [~ 388 test (48.4394506866417%) started, 413 in queue, 48 running]
Running Test threefold_symm_peptide_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/threefold_symm_peptide_design/command.sh
Finished mp_symdock in 264 seconds [~ 389 test (48.56429463171036%) started, 412 in queue, 48 running]
Running Test rna_denovo_RNP_low_res
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_RNP_low_res/command.sh
Finished composition_energy_layers in 943 seconds [~ 390 test (48.68913857677903%) started, 411 in queue, 48 running]
Running Test KIC_with_fragments
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/KIC_with_fragments/command.sh
Finished swm_rna_srl_triplet in 960 seconds [~ 391 test (48.81398252184769%) started, 410 in queue, 48 running]
Running Test splice_out_L1_L2_same
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_L1_L2_same/command.sh
Finished coupled_moves in 901 seconds [~ 392 test (48.93882646691635%) started, 409 in queue, 48 running]
Running Test hshash_utils
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hshash_utils/command.sh
Finished splice_out_H1_H2_shorter in 111 seconds [~ 393 test (49.06367041198502%) started, 408 in queue, 48 running]
Running Test ppi_v3_suiteE
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteE/command.sh
Finished mr_protocols in 451 seconds [~ 394 test (49.188514357053684%) started, 407 in queue, 48 running]
Running Test thermal_sampler
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/thermal_sampler/command.sh
Finished splice_out_H1_H2_same in 122 seconds [~ 395 test (49.313358302122346%) started, 406 in queue, 48 running]
Running Test AlterSpecDisruption
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/AlterSpecDisruption/command.sh
Finished rosetta_scripts_loops in 615 seconds [~ 396 test (49.438202247191015%) started, 405 in queue, 48 running]
Running Test ppi_v3_suiteA
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteA/command.sh
Finished hshash_utils in 30 seconds [~ 397 test (49.56304619225968%) started, 404 in queue, 48 running]
Running Test dock_with_hotspot_place_simultaneously
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dock_with_hotspot_place_simultaneously/command.sh
Finished kinemage_grid_output in 107 seconds [~ 398 test (49.68789013732834%) started, 403 in queue, 48 running]
Running Test docking_ensemble
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_ensemble/command.sh
Finished splice_out_H1_H2_longer in 177 seconds [~ 399 test (49.81273408239701%) started, 402 in queue, 48 running]
Running Test swm_rna_move_inside_helix_by_jump
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_move_inside_helix_by_jump/command.sh
Finished relax_w_allatom_cst in 515 seconds [~ 400 test (49.93757802746567%) started, 401 in queue, 48 running]
Running Test pmut_scan
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pmut_scan/command.sh
Finished ddG_ensemble in 811 seconds [~ 401 test (50.06242197253433%) started, 400 in queue, 48 running]
Running Test disulfidize_beta_cys
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/disulfidize_beta_cys/command.sh
Finished swa_protein_CCDclose in 750 seconds [~ 402 test (50.18726591760299%) started, 399 in queue, 48 running]
Running Test swm_l_rna
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_l_rna/command.sh
Finished range_relax_w_cst in 351 seconds [~ 403 test (50.31210986267166%) started, 398 in queue, 48 running]
Running Test rna_puzzle11_H2H3H4_run3_connectU40
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_puzzle11_H2H3H4_run3_connectU40/command.sh
Finished nonideal_rtmin in 923 seconds [~ 404 test (50.43695380774032%) started, 397 in queue, 48 running]
Running Test mp_find_interface
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_find_interface/command.sh
Finished vip in 647 seconds [~ 405 test (50.561797752808985%) started, 396 in queue, 48 running]
Running Test hotspot_graft
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hotspot_graft/command.sh
Finished bundlegridsampler_epsilon in 206 seconds [~ 406 test (50.686641697877654%) started, 395 in queue, 48 running]
Running Test zinc_heterodimer
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/zinc_heterodimer/command.sh
Finished splice_out_L1_L2_same in 122 seconds [~ 407 test (50.811485642946316%) started, 394 in queue, 48 running]
Running Test rna_denovo_RNP_refine_native
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_RNP_refine_native/command.sh
Finished threefold_symm_peptide_design in 179 seconds [~ 408 test (50.93632958801498%) started, 393 in queue, 48 running]
Running Test docking_local_refine
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_local_refine/command.sh
Finished simple_glycosylation in 700 seconds [~ 409 test (51.06117353308365%) started, 392 in queue, 48 running]
Running Test beta_strand_homodimer
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/beta_strand_homodimer/command.sh
Finished rna_denovo_base_pair_constraints in 974 seconds [~ 410 test (51.18601747815231%) started, 391 in queue, 48 running]
Running Test simple_cycpep_predict_cispro
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_cispro/command.sh
Finished ppi_v3_suiteB in 282 seconds [~ 411 test (51.31086142322097%) started, 390 in queue, 48 running]
Running Test TryDisulfPermutations
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/TryDisulfPermutations/command.sh
Finished thermal_sampler in 118 seconds [~ 412 test (51.43570536828964%) started, 389 in queue, 48 running]
Running Test genkic_rama_filter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_rama_filter/command.sh
Finished sdf_reader in 261 seconds [~ 413 test (51.5605493133583%) started, 388 in queue, 48 running]
Running Test KIC_vicinity
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/KIC_vicinity/command.sh
Finished bundlegridsampler_composition_energy in 1145 seconds [~ 414 test (51.68539325842696%) started, 387 in queue, 48 running]
Finished remodel_helical_repeat in 204 seconds [~ 414 test (51.68539325842696%) started, 387 in queue, 47 running]
Running Test task_selector
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/task_selector/command.sh
Running Test swm_beta_peptide_loop
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_beta_peptide_loop/command.sh
Finished rna_denovo_RNP_low_res in 205 seconds [~ 416 test (51.935081148564294%) started, 385 in queue, 48 running]
Running Test docking_site_constraints
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_site_constraints/command.sh
Finished mp_relax in 274 seconds [~ 417 test (52.059925093632955%) started, 384 in queue, 48 running]
Running Test splice_out_L1_L2_longer
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_L1_L2_longer/command.sh
Finished symm_disulfidize in 271 seconds [~ 418 test (52.184769038701624%) started, 383 in queue, 48 running]
Running Test rotamer_probability
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rotamer_probability/command.sh
Finished dock_with_hotspot_place_simultaneously in 147 seconds [~ 419 test (52.309612983770286%) started, 382 in queue, 48 running]
Running Test rna_farfar_block_stack
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_farfar_block_stack/command.sh
Finished rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation in 500 seconds [~ 420 test (52.43445692883895%) started, 381 in queue, 48 running]
Running Test ligand_dock_7cpa
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_dock_7cpa/command.sh
Finished match_1n9l in 304 seconds [~ 421 test (52.55930087390762%) started, 380 in queue, 48 running]
Running Test hbs_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbs_design/command.sh
Finished add_helix_sequence_constraints_advanced_setup in 1203 seconds [~ 422 test (52.68414481897628%) started, 379 in queue, 48 running]
Running Test bundlereporter_filter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlereporter_filter/command.sh
Finished ligand_dock_script in 445 seconds [~ 423 test (52.80898876404494%) started, 378 in queue, 48 running]
Running Test AnchoredDesign
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/AnchoredDesign/command.sh
Finished ppi_v3_suiteE in 192 seconds [~ 424 test (52.93383270911361%) started, 377 in queue, 48 running]
Running Test simple_cycpep_predict_symm_gly
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_symm_gly/command.sh
Finished genkic_rama_filter in 78 seconds [~ 425 test (53.05867665418227%) started, 376 in queue, 48 running]
Running Test ppi_v3_suiteG
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteG/command.sh
Finished test1_benchmark in 782 seconds [~ 426 test (53.18352059925093%) started, 375 in queue, 48 running]
Running Test swm_rna_singleloop
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_singleloop/command.sh
Finished ligand_database_io in 482 seconds [~ 427 test (53.3083645443196%) started, 374 in queue, 48 running]
Running Test swa_protein_build_at_Nterminus
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_build_at_Nterminus/command.sh
Finished supercharge in 674 seconds [~ 428 test (53.433208489388264%) started, 373 in queue, 48 running]
Running Test ppi_v3_suiteD
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppi_v3_suiteD/command.sh
Finished disulfidize_beta_cys in 179 seconds [~ 429 test (53.558052434456926%) started, 372 in queue, 48 running]
Running Test bundlegridsampler
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler/command.sh
Finished ppi_v3_suiteA in 229 seconds [~ 430 test (53.682896379525594%) started, 371 in queue, 48 running]
Running Test simple_cycpep_predict_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_design/command.sh
Finished enzdes in 346 seconds [~ 431 test (53.807740324594256%) started, 370 in queue, 48 running]
Running Test rs_flexbbmoves
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rs_flexbbmoves/command.sh
Finished ddG_of_mutation in 1245 seconds [~ 432 test (53.93258426966292%) started, 369 in queue, 48 running]
Running Test swm_protein_loop_sampler
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_protein_loop_sampler/command.sh
Finished TryDisulfPermutations in 165 seconds [~ 433 test (54.05742821473159%) started, 368 in queue, 48 running]
Running Test peptiderive
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/peptiderive/command.sh
Finished swm_rna_move_inside_helix_by_jump in 227 seconds [~ 434 test (54.18227215980025%) started, 367 in queue, 48 running]
Running Test oop_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/oop_design/command.sh
Finished swm_beta_peptide_loop in 161 seconds [~ 435 test (54.30711610486891%) started, 366 in queue, 48 running]
Running Test kinematic_looprelax
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/kinematic_looprelax/command.sh
Finished simple_cycpep_predict_cispro in 179 seconds [~ 436 test (54.43196004993758%) started, 365 in queue, 48 running]
Running Test dock_glycans
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/dock_glycans/command.sh
Finished splice_out_L1_L2_longer in 140 seconds [~ 437 test (54.55680399500624%) started, 364 in queue, 48 running]
Running Test bundlegridsampler_design_nstruct_mode
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_design_nstruct_mode/command.sh
Finished swa_protein_prepack in 606 seconds [~ 438 test (54.6816479400749%) started, 363 in queue, 48 running]
Running Test backrub_pilot
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backrub_pilot/command.sh
Finished batch_relax in 389 seconds [~ 439 test (54.80649188514357%) started, 362 in queue, 48 running]
Running Test Enzrevert_xml
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/Enzrevert_xml/command.sh
Finished rna_puzzle11_H2H3H4_run3_connectU40 in 237 seconds [~ 440 test (54.931335830212234%) started, 361 in queue, 48 running]
Running Test KIC_refine
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/KIC_refine/command.sh
Finished fast_relax in 414 seconds [~ 441 test (55.056179775280896%) started, 360 in queue, 48 running]
Running Test next_generation_KIC
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/next_generation_KIC/command.sh
Finished KIC_vicinity in 195 seconds [~ 442 test (55.181023720349565%) started, 359 in queue, 48 running]
Running Test simple_cycpep_predict_symmetric_sampling
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_symmetric_sampling/command.sh
Finished UBQ_E2_thioester_extra_bodies in 448 seconds [~ 443 test (55.305867665418226%) started, 358 in queue, 48 running]
Running Test rosie_ligand_docking
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosie_ligand_docking/command.sh
Finished glycan_tree_relax in 1318 seconds [~ 444 test (55.43071161048689%) started, 357 in queue, 48 running]
Running Test rna_denovo_bps
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_bps/command.sh
Finished hotspot_graft in 243 seconds [~ 445 test (55.55555555555556%) started, 356 in queue, 48 running]
Running Test features
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features/command.sh
Finished mp_find_interface in 256 seconds [~ 446 test (55.68039950062422%) started, 355 in queue, 48 running]
Running Test cycpep_symmetry_filter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cycpep_symmetry_filter/command.sh
Finished KIC_with_fragments in 362 seconds [~ 447 test (55.80524344569288%) started, 354 in queue, 48 running]
Running Test backrub_interface_ddG
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backrub_interface_ddG/command.sh
Finished simple_cycpep_predict_symm_gly in 156 seconds [~ 448 test (55.93008739076155%) started, 353 in queue, 48 running]
Running Test simple_hbondstoatom
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_hbondstoatom/command.sh
Finished bundlereporter_filter in 164 seconds [~ 449 test (56.05493133583021%) started, 352 in queue, 48 running]
Running Test inv_kin_lig_loop_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/inv_kin_lig_loop_design/command.sh
Finished rna_denovo_bps in 31 seconds [~ 450 test (56.17977528089887%) started, 351 in queue, 48 running]
Running Test hbonds_sp2
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbonds_sp2/command.sh
Finished rna_farfar_block_stack in 189 seconds [~ 451 test (56.30461922596754%) started, 350 in queue, 48 running]
Running Test hbonds
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbonds/command.sh
Finished rotamer_probability in 202 seconds [~ 452 test (56.429463171036204%) started, 349 in queue, 48 running]
Running Test fixbb
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fixbb/command.sh
Finished rna_denovo_RNP_refine_native in 263 seconds [~ 453 test (56.554307116104866%) started, 348 in queue, 48 running]
Running Test entropy_correction
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/entropy_correction/command.sh
Finished simple_cycpep_predict_symmetric_sampling in 49 seconds [~ 454 test (56.679151061173535%) started, 347 in queue, 48 running]
Running Test bundlegridsampler_z1_offset
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_z1_offset/command.sh
Finished remodel_disulfides_rosettascripts in 615 seconds [~ 455 test (56.8039950062422%) started, 346 in queue, 48 running]
Running Test bundlegridsampler_z0_offset
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_z0_offset/command.sh
Finished swm_l_rna in 309 seconds [~ 456 test (56.92883895131086%) started, 345 in queue, 48 running]
Running Test rotamer_recovery
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rotamer_recovery/command.sh
Finished ppi_v3_suiteG in 180 seconds [~ 457 test (57.05368289637953%) started, 344 in queue, 48 running]
Running Test rna_assemble
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_assemble/command.sh
Finished bundlegridsampler in 136 seconds [~ 458 test (57.17852684144819%) started, 343 in queue, 48 running]
Running Test place_simultaneously
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/place_simultaneously/command.sh
Finished docking_site_constraints in 248 seconds [~ 459 test (57.30337078651685%) started, 342 in queue, 48 running]
Running Test doug_dock_design_min_mod2_cal_cal
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/doug_dock_design_min_mod2_cal_cal/command.sh
Finished simple_cycpep_predict_design in 153 seconds [~ 460 test (57.42821473158552%) started, 341 in queue, 48 running]
Running Test docking_full_protocol
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_full_protocol/command.sh
Finished swm_rna_singleloop in 175 seconds [~ 461 test (57.55305867665418%) started, 340 in queue, 48 running]
Running Test UBQ_E2_thioester
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/UBQ_E2_thioester/command.sh
Finished AnchoredDesign in 222 seconds [~ 462 test (57.67790262172284%) started, 339 in queue, 48 running]
Running Test symm_rotamer_boltzmann
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symm_rotamer_boltzmann/command.sh
Finished task_selector in 286 seconds [~ 463 test (57.80274656679151%) started, 338 in queue, 48 running]
Running Test splice_out_H3_same
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_H3_same/command.sh
Finished add_helix_sequence_constraints in 1443 seconds [~ 464 test (57.927590511860174%) started, 337 in queue, 48 running]
Running Test membrane_abinitio
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/membrane_abinitio/command.sh
Finished rs_flexbbmoves in 161 seconds [~ 465 test (58.052434456928836%) started, 336 in queue, 48 running]
Running Test docking_distance_constraints
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_distance_constraints/command.sh
Finished ppi_v3_suiteD in 180 seconds [~ 466 test (58.177278401997505%) started, 335 in queue, 48 running]
Running Test swm_rna_protonated_adenosine
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_protonated_adenosine/command.sh
Finished jd2test_mmCIFin_PDBout in 791 seconds [~ 467 test (58.30212234706617%) started, 334 in queue, 48 running]
Running Test splice_out_L3_same
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_L3_same/command.sh
Finished AlterSpecDisruption in 413 seconds [~ 468 test (58.42696629213483%) started, 333 in queue, 48 running]
Running Test loop_modeling
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/loop_modeling/command.sh
Finished swm_protein_loop_sampler in 163 seconds [~ 469 test (58.5518102372035%) started, 332 in queue, 48 running]
Running Test ligand_motif_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_motif_design/command.sh
Finished swa_protein_build_at_Nterminus in 205 seconds [~ 470 test (58.67665418227216%) started, 331 in queue, 48 running]
Running Test bin_initialization
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bin_initialization/command.sh
Finished ligand_dock_7cpa in 270 seconds [~ 471 test (58.80149812734082%) started, 330 in queue, 48 running]
Running Test torsion_restricted_sampling
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/torsion_restricted_sampling/command.sh
Finished jd2test_mmCIFIO in 796 seconds [~ 472 test (58.92634207240949%) started, 329 in queue, 48 running]
Running Test swm_protein_move_inside_helix_by_bond
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_protein_move_inside_helix_by_bond/command.sh
Finished glycan_relax in 1034 seconds [~ 473 test (59.05118601747815%) started, 328 in queue, 48 running]
Running Test sequence_profile_constraints
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sequence_profile_constraints/command.sh
Finished rna_assemble in 73 seconds [~ 474 test (59.176029962546814%) started, 327 in queue, 48 running]
Running Test rosetta_scripts_include
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosetta_scripts_include/command.sh
Finished cycpep_symmetry_filter in 120 seconds [~ 475 test (59.30087390761548%) started, 326 in queue, 48 running]
Running Test rna_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_design/command.sh
Finished simple_hbondstoatom in 110 seconds [~ 476 test (59.425717852684144%) started, 325 in queue, 48 running]
Running Test perturb_helical_bundle
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/perturb_helical_bundle/command.sh
Finished zinc_heterodimer in 388 seconds [~ 477 test (59.550561797752806%) started, 324 in queue, 48 running]
Running Test helical_bundle_nonideal
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle_nonideal/command.sh
Finished inv_kin_lig_loop_design in 126 seconds [~ 478 test (59.675405742821475%) started, 323 in queue, 48 running]
Running Test swm_rna_nickedhelix
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_nickedhelix/command.sh
Finished bundlegridsampler_design_nstruct_mode in 193 seconds [~ 479 test (59.80024968789014%) started, 322 in queue, 48 running]
Finished rotamer_recovery in 105 seconds [~ 479 test (59.80024968789014%) started, 322 in queue, 47 running]
Running Test mf_fixbb_des
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mf_fixbb_des/command.sh
Running Test match_xml
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/match_xml/command.sh
Finished bundlegridsampler_z1_offset in 118 seconds [~ 481 test (60.04993757802747%) started, 320 in queue, 48 running]
Running Test genkic_lowmemory_mode
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_lowmemory_mode/command.sh
Finished pmut_scan in 424 seconds [~ 482 test (60.17478152309613%) started, 319 in queue, 48 running]
Finished Enzrevert_xml in 184 seconds [~ 482 test (60.17478152309613%) started, 319 in queue, 47 running]
Running Test flexpepdock_abinitio
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/flexpepdock_abinitio/command.sh
Running Test features_parallel
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features_parallel/command.sh
Finished bundlegridsampler_z0_offset in 116 seconds [~ 484 test (60.42446941323346%) started, 317 in queue, 48 running]
Running Test swa_rna_gagu_15_combine_long_loop_sampling
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_15_combine_long_loop_sampling/command.sh
Finished backrub_pilot in 208 seconds [~ 485 test (60.54931335830212%) started, 316 in queue, 48 running]
Running Test splice_out_H3_shorter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_H3_shorter/command.sh
Finished KIC_refine in 187 seconds [~ 486 test (60.674157303370784%) started, 315 in queue, 48 running]
Running Test splice_out_H3_longer
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_H3_longer/command.sh
Finished docking_ensemble in 476 seconds [~ 487 test (60.79900124843945%) started, 314 in queue, 48 running]
Running Test residue_energy_breakdown
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/residue_energy_breakdown/command.sh
Finished next_generation_KIC in 192 seconds [~ 488 test (60.923845193508114%) started, 313 in queue, 48 running]
Running Test readin_dna_rna_protein
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/readin_dna_rna_protein/command.sh
Finished splice_out_H3_same in 93 seconds [~ 489 test (61.048689138576776%) started, 312 in queue, 48 running]
Running Test fuzzy
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fuzzy/command.sh
Finished backrub_interface_ddG in 174 seconds [~ 490 test (61.173533083645445%) started, 311 in queue, 48 running]
Running Test docking_ensemble_prepack
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_ensemble_prepack/command.sh
Finished docking_local_refine in 404 seconds [~ 491 test (61.29837702871411%) started, 310 in queue, 48 running]
Running Test bundlegridsampler_multirepeat
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_multirepeat/command.sh
Finished hbonds_sp2 in 161 seconds [~ 492 test (61.42322097378277%) started, 309 in queue, 48 running]
Running Test ThreadingInputter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ThreadingInputter/command.sh
Finished hbonds in 163 seconds [~ 493 test (61.54806491885144%) started, 308 in queue, 48 running]
Running Test score12_docking
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/score12_docking/command.sh
Finished dock_glycans in 236 seconds [~ 494 test (61.6729088639201%) started, 307 in queue, 48 running]
Running Test rosetta_scripts_setup
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosetta_scripts_setup/command.sh
Finished place_simultaneously in 151 seconds [~ 495 test (61.79775280898876%) started, 306 in queue, 48 running]
Running Test pocket_relax
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pocket_relax/command.sh
Finished kinematic_looprelax in 248 seconds [~ 496 test (61.92259675405743%) started, 305 in queue, 48 running]
Running Test mp_dock
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_dock/command.sh
Finished features in 207 seconds [~ 497 test (62.04744069912609%) started, 304 in queue, 48 running]
Running Test bundlegridsampler_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bundlegridsampler_design/command.sh
Finished swm_rna_protonated_adenosine in 111 seconds [~ 498 test (62.172284644194754%) started, 303 in queue, 48 running]
Running Test UBQ_Gp_LYX-Cterm
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/UBQ_Gp_LYX-Cterm/command.sh
Finished hbs_design in 359 seconds [~ 499 test (62.29712858926342%) started, 302 in queue, 48 running]
Running Test LayerDesign
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/LayerDesign/command.sh
Finished rosie_ligand_docking in 228 seconds [~ 500 test (62.421972534332085%) started, 301 in queue, 48 running]
Running Test swa_protein_build_at_Cterminus
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_protein_build_at_Cterminus/command.sh
Finished swm_protein_move_inside_helix_by_bond in 114 seconds [~ 501 test (62.546816479400746%) started, 300 in queue, 48 running]
Running Test jd2test_PDBin_mmCIFout_extra_data_separate
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jd2test_PDBin_mmCIFout_extra_data_separate/command.sh
Finished rosetta_scripts_include in 107 seconds [~ 502 test (62.671660424469415%) started, 299 in queue, 48 running]
Running Test jd2test_PDBin_mmCIFout
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jd2test_PDBin_mmCIFout/command.sh
Finished membrane_abinitio in 144 seconds [~ 503 test (62.79650436953808%) started, 298 in queue, 48 running]
Running Test jd2test_PDBIO
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jd2test_PDBIO/command.sh
Finished swm_rna_nickedhelix in 86 seconds [~ 504 test (62.92134831460674%) started, 297 in queue, 48 running]
Running Test density_refine
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/density_refine/command.sh
Finished perturb_helical_bundle in 108 seconds [~ 505 test (63.04619225967541%) started, 296 in queue, 48 running]
Running Test add_constraints_to_current_conformation
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/add_constraints_to_current_conformation/command.sh
Finished ligand_motif_design in 136 seconds [~ 506 test (63.17103620474407%) started, 295 in queue, 48 running]
Running Test LayerSelector
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/LayerSelector/command.sh
Finished splice_out_H3_shorter in 75 seconds [~ 507 test (63.29588014981273%) started, 294 in queue, 48 running]
Running Test FloppyTail
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/FloppyTail/command.sh
Finished docking_full_protocol in 177 seconds [~ 508 test (63.4207240948814%) started, 293 in queue, 48 running]
Running Test threefoldlinkermover_tbmb_symmetric
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/threefoldlinkermover_tbmb_symmetric/command.sh
Finished helical_bundle_nonideal in 104 seconds [~ 509 test (63.54556803995006%) started, 292 in queue, 48 running]
Running Test swm_rna_loop_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_loop_design/command.sh
Finished sequence_profile_constraints in 136 seconds [~ 510 test (63.670411985018724%) started, 291 in queue, 48 running]
Running Test swm_rna_fourwayjunction
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_fourwayjunction/command.sh
Finished splice_out_L3_same in 156 seconds [~ 511 test (63.79525593008739%) started, 290 in queue, 48 running]
Running Test rna_puzzle6_j67_into_p6p7rigidbody_thread1
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_puzzle6_j67_into_p6p7rigidbody_thread1/command.sh
Finished fuzzy in 84 seconds [~ 512 test (63.920099875156055%) started, 289 in queue, 48 running]
Running Test posttranslationalmod_io
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/posttranslationalmod_io/command.sh
Finished bin_initialization in 156 seconds [~ 513 test (64.04494382022472%) started, 288 in queue, 48 running]
Running Test motif_score_filter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/motif_score_filter/command.sh
Finished oop_design in 321 seconds [~ 514 test (64.16978776529338%) started, 287 in queue, 48 running]
Running Test cluster_alns
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cluster_alns/command.sh
Finished match_xml in 115 seconds [~ 515 test (64.29463171036205%) started, 286 in queue, 48 running]
Running Test backrub
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backrub/command.sh
Finished residue_energy_breakdown in 98 seconds [~ 516 test (64.41947565543072%) started, 285 in queue, 48 running]
Running Test antibody_graft
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_graft/command.sh
Finished genkic_lowmemory_mode in 112 seconds [~ 517 test (64.54431960049938%) started, 284 in queue, 48 running]
Running Test antibody_H3_camelid
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_H3_camelid/command.sh
Finished bundlegridsampler_multirepeat in 89 seconds [~ 518 test (64.66916354556804%) started, 283 in queue, 48 running]
Running Test score_only_silence
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/score_only_silence/command.sh
Finished rosetta_scripts_setup in 82 seconds [~ 519 test (64.7940074906367%) started, 282 in queue, 48 running]
Running Test mf_flexbb_sc
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mf_flexbb_sc/command.sh
Finished ThreadingInputter in 93 seconds [~ 520 test (64.91885143570536%) started, 281 in queue, 48 running]
Running Test UBQ_Gp_CYD-CYD
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/UBQ_Gp_CYD-CYD/command.sh
Finished symm_rotamer_boltzmann in 201 seconds [~ 521 test (65.04369538077404%) started, 280 in queue, 48 running]
Running Test splice_out_L3_longer
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_L3_longer/command.sh
Finished swa_rna_gagu_15_combine_long_loop_sampling in 125 seconds [~ 522 test (65.1685393258427%) started, 279 in queue, 48 running]
Running Test simple_dna_test
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_dna_test/command.sh
Finished rna_design in 164 seconds [~ 523 test (65.29338327091136%) started, 278 in queue, 48 running]
Running Test molfile_to_params
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/molfile_to_params/command.sh
Finished doug_dock_design_min_mod2_cal_cal in 226 seconds [~ 524 test (65.41822721598002%) started, 277 in queue, 48 running]
Running Test centroid_from_fullatom
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/centroid_from_fullatom/command.sh
Finished UBQ_E2_thioester in 222 seconds [~ 525 test (65.54307116104869%) started, 276 in queue, 48 running]
Running Test ReadResfile_with_selector
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ReadResfile_with_selector/command.sh
Finished loop_modeling in 197 seconds [~ 526 test (65.66791510611735%) started, 275 in queue, 48 running]
Running Test AnchoredPDBCreator
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/AnchoredPDBCreator/command.sh
Finished swm_rna_loop_design in 49 seconds [~ 527 test (65.79275905118602%) started, 274 in queue, 48 running]
Running Test threefoldlinkermover_tbmb
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/threefoldlinkermover_tbmb/command.sh
Finished molfile_to_params in 15 seconds [~ 528 test (65.91760299625469%) started, 273 in queue, 48 running]
Running Test swa_rna_gagu_13_chunk_combination_and_closure
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_13_chunk_combination_and_closure/command.sh
Finished threefoldlinkermover_tbmb_symmetric in 62 seconds [~ 529 test (66.04244694132335%) started, 272 in queue, 48 running]
Running Test sequence_recovery
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sequence_recovery/command.sh
Finished LayerDesign in 106 seconds [~ 530 test (66.16729088639201%) started, 271 in queue, 48 running]
Running Test genkic_bin_perturbing
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_bin_perturbing/command.sh
Finished mf_fixbb_des in 166 seconds [~ 531 test (66.29213483146067%) started, 270 in queue, 48 running]
Running Test symmetric_cycpep_align_and_symmetrize
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symmetric_cycpep_align_and_symmetrize/command.sh
Finished mp_dock in 118 seconds [~ 532 test (66.41697877652933%) started, 269 in queue, 48 running]
Running Test splice_out_L3_shorter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/splice_out_L3_shorter/command.sh
Finished features_parallel in 168 seconds [~ 533 test (66.54182272159801%) started, 268 in queue, 48 running]
Running Test ppk
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ppk/command.sh
Finished posttranslationalmod_io in 71 seconds [~ 534 test (66.66666666666667%) started, 267 in queue, 48 running]
Running Test mp_symmetry_load
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_symmetry_load/command.sh
Finished readin_dna_rna_protein in 157 seconds [~ 535 test (66.79151061173533%) started, 266 in queue, 48 running]
Running Test ligand_dock_grid
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ligand_dock_grid/command.sh
Finished score12_docking in 144 seconds [~ 536 test (66.916354556804%) started, 265 in queue, 48 running]
Running Test rollmover
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rollmover/command.sh
Finished FloppyTail in 92 seconds [~ 537 test (67.04119850187266%) started, 264 in queue, 48 running]
Running Test oop_dock_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/oop_dock_design/command.sh
Finished swa_protein_build_at_Cterminus in 116 seconds [~ 538 test (67.16604244694132%) started, 263 in queue, 48 running]
Running Test metalloprotein_abrelax
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/metalloprotein_abrelax/command.sh
Finished motif_score_filter in 74 seconds [~ 539 test (67.29088639200998%) started, 262 in queue, 48 running]
Running Test backbonegridsampler_nstruct_mode
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backbonegridsampler_nstruct_mode/command.sh
Finished bundlegridsampler_design in 135 seconds [~ 540 test (67.41573033707866%) started, 261 in queue, 48 running]
Finished mf_flexbb_sc in 65 seconds [~ 540 test (67.41573033707866%) started, 261 in queue, 47 running]
Running Test backbonegridsampler_multiresidue
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backbonegridsampler_multiresidue/command.sh
Running Test LayerDesign_symm
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/LayerDesign_symm/command.sh
Finished torsion_restricted_sampling in 234 seconds [~ 542 test (67.66541822721598%) started, 259 in queue, 48 running]
Running Test swm_rna_move_inside_helix_by_bond
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_move_inside_helix_by_bond/command.sh
Finished jd2test_PDBin_mmCIFout_extra_data_separate in 119 seconds [~ 543 test (67.79026217228464%) started, 258 in queue, 48 running]
Running Test startfrom_file
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/startfrom_file/command.sh
Finished jd2test_PDBin_mmCIFout in 122 seconds [~ 544 test (67.9151061173533%) started, 257 in queue, 48 running]
Running Test simple_cycpep_predict_nmethyl
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/simple_cycpep_predict_nmethyl/command.sh
Finished rna_puzzle6_j67_into_p6p7rigidbody_thread1 in 95 seconds [~ 545 test (68.03995006242197%) started, 256 in queue, 48 running]
Running Test perturb_helical_bundle_z_offset
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/perturb_helical_bundle_z_offset/command.sh
Finished jd2test_PDBIO in 121 seconds [~ 546 test (68.16479400749064%) started, 255 in queue, 48 running]
Running Test perturb_helical_bundle_epsilon
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/perturb_helical_bundle_epsilon/command.sh
Finished docking_distance_constraints in 264 seconds [~ 547 test (68.2896379525593%) started, 254 in queue, 48 running]
Running Test mp_mutate_relax
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_mutate_relax/command.sh
Finished cluster_alns in 93 seconds [~ 548 test (68.41448189762797%) started, 253 in queue, 48 running]
Running Test minimize_with_elec_dens
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/minimize_with_elec_dens/command.sh
Finished threefoldlinkermover_tbmb in 64 seconds [~ 549 test (68.53932584269663%) started, 252 in queue, 48 running]
Running Test metropolis_hastings
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/metropolis_hastings/command.sh
Finished centroid_from_fullatom in 76 seconds [~ 550 test (68.66416978776529%) started, 251 in queue, 48 running]
Running Test fold_cst_new
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fold_cst_new/command.sh
Finished score_only_silence in 103 seconds [~ 551 test (68.78901373283395%) started, 250 in queue, 48 running]
Running Test favor_native_residue
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/favor_native_residue/command.sh
Finished flexpepdock_abinitio in 216 seconds [~ 552 test (68.91385767790263%) started, 249 in queue, 48 running]
Running Test broker
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/broker/command.sh
Finished swm_rna_fourwayjunction in 119 seconds [~ 553 test (69.03870162297129%) started, 248 in queue, 48 running]
Running Test bin_perturbation
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/bin_perturbation/command.sh
Finished add_constraints_to_current_conformation in 142 seconds [~ 554 test (69.16354556803995%) started, 247 in queue, 48 running]
Running Test RBOut
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/RBOut/command.sh
Finished sequence_recovery in 69 seconds [~ 555 test (69.28838951310861%) started, 246 in queue, 48 running]
Running Test symmetry_multicomponent
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symmetry_multicomponent/command.sh
Finished symmetric_cycpep_align_and_symmetrize in 61 seconds [~ 556 test (69.41323345817727%) started, 245 in queue, 48 running]
Running Test symmetrical_residue_selector
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symmetrical_residue_selector/command.sh
Finished UBQ_Gp_LYX-Cterm in 173 seconds [~ 557 test (69.53807740324594%) started, 244 in queue, 48 running]
Running Test swm_protein_move_inside_coiledcoil_by_bond
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_protein_move_inside_coiledcoil_by_bond/command.sh
Finished LayerSelector in 138 seconds [~ 558 test (69.66292134831461%) started, 243 in queue, 48 running]
Running Test swa_rna_gagu_18_rebuild_bulge
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_18_rebuild_bulge/command.sh
Finished antibody_graft in 124 seconds [~ 559 test (69.78776529338327%) started, 242 in queue, 48 running]
Finished simple_cycpep_predict_nmethyl in 41 seconds [~ 559 test (69.78776529338327%) started, 242 in queue, 47 running]
Running Test smallmover_resselector
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/smallmover_resselector/command.sh
Running Test swa_rna_gagu_10_prepend_and_ccd_close
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_10_prepend_and_ccd_close/command.sh
Finished density_refine in 160 seconds [~ 561 test (70.0374531835206%) started, 240 in queue, 48 running]
Running Test rna_motif
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_motif/command.sh
Finished cyclization in 1185 seconds [~ 562 test (70.16229712858926%) started, 239 in queue, 48 running]
Running Test repack_with_elec_dens
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/repack_with_elec_dens/command.sh
Finished genkic_bin_perturbing in 80 seconds [~ 563 test (70.28714107365792%) started, 238 in queue, 48 running]
Finished mp_symmetry_load in 66 seconds [~ 563 test (70.28714107365792%) started, 238 in queue, 47 running]
Running Test mp_range_relax
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_range_relax/command.sh
Running Test rama_mutation_selector
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rama_mutation_selector/command.sh
Finished swa_rna_gagu_13_chunk_combination_and_closure in 95 seconds [~ 565 test (70.53682896379526%) started, 236 in queue, 48 running]
Running Test min_pack_min
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/min_pack_min/command.sh
Finished ligand_dock_grid in 72 seconds [~ 566 test (70.66167290886392%) started, 235 in queue, 48 running]
Finished rollmover in 71 seconds [~ 566 test (70.66167290886392%) started, 235 in queue, 47 running]
Running Test make_symmdef_file
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_symmdef_file/command.sh
Running Test genkic_ramaprepro_sampling
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_ramaprepro_sampling/command.sh
Finished pocket_relax in 202 seconds [~ 568 test (70.91136079900124%) started, 233 in queue, 48 running]
Running Test ddG_scan
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ddG_scan/command.sh
Finished ReadResfile_with_selector in 112 seconds [~ 569 test (71.0362047440699%) started, 232 in queue, 48 running]
Running Test UnsatSelector
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/UnsatSelector/command.sh
Finished backbonegridsampler_multiresidue in 67 seconds [~ 570 test (71.16104868913858%) started, 231 in queue, 48 running]
Running Test PeptideCyclizeMover
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/PeptideCyclizeMover/command.sh
Finished fixbb in 384 seconds [~ 571 test (71.28589263420724%) started, 230 in queue, 48 running]
Running Test symmetric_docking
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symmetric_docking/command.sh
Finished ppk in 87 seconds [~ 572 test (71.4107365792759%) started, 229 in queue, 48 running]
Running Test swm_protein_CCDmove
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_protein_CCDmove/command.sh
Finished UBQ_Gp_CYD-CYD in 135 seconds [~ 573 test (71.53558052434457%) started, 228 in queue, 48 running]
Running Test swa_rna_gagu_23_append_and_kic_close
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_23_append_and_kic_close/command.sh
Finished entropy_correction in 383 seconds [~ 574 test (71.66042446941323%) started, 227 in queue, 48 running]
Running Test seed_ensemble_JD2_JI
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/seed_ensemble_JD2_JI/command.sh
Finished startfrom_file in 69 seconds [~ 575 test (71.78526841448189%) started, 226 in queue, 48 running]
Running Test rna_farfar_syn_chi_res
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_farfar_syn_chi_res/command.sh
Finished perturb_helical_bundle_epsilon in 67 seconds [~ 576 test (71.91011235955057%) started, 225 in queue, 48 running]
Running Test mf_fixbb_sc
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mf_fixbb_sc/command.sh
Finished perturb_helical_bundle_z_offset in 68 seconds [~ 577 test (72.03495630461923%) started, 224 in queue, 48 running]
Running Test make_rot_lib
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_rot_lib/command.sh
Finished LayerDesign_symm in 82 seconds [~ 578 test (72.15980024968789%) started, 223 in queue, 48 running]
Running Test grid_scores_features
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/grid_scores_features/command.sh
Finished mp_mutate_relax in 75 seconds [~ 579 test (72.28464419475655%) started, 222 in queue, 48 running]
Running Test density_denovo
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/density_denovo/command.sh
Finished rna_motif in 37 seconds [~ 580 test (72.40948813982521%) started, 221 in queue, 48 running]
Running Test carbohydrates
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/carbohydrates/command.sh
Finished symmetrical_residue_selector in 53 seconds [~ 581 test (72.53433208489388%) started, 220 in queue, 48 running]
Running Test swa_rna_gagu_11_append_and_ccd_close
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_11_append_and_ccd_close/command.sh
Finished swm_rna_move_inside_helix_by_bond in 88 seconds [~ 582 test (72.65917602996255%) started, 219 in queue, 48 running]
Finished RBOut in 60 seconds [~ 582 test (72.65917602996255%) started, 219 in queue, 47 running]
Running Test rna_denovo_base_pair_setup
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_base_pair_setup/command.sh
Running Test mp_vis_emb
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_vis_emb/command.sh
Finished backbonegridsampler_nstruct_mode in 98 seconds [~ 584 test (72.90886392009988%) started, 217 in queue, 48 running]
Running Test mp_score_jd2
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_score_jd2/command.sh
Finished splice_out_L3_shorter in 115 seconds [~ 585 test (73.03370786516854%) started, 216 in queue, 48 running]
Running Test mp_mutate_repack
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_mutate_repack/command.sh
Finished oop_dock_design in 104 seconds [~ 586 test (73.1585518102372%) started, 215 in queue, 48 running]
Running Test metal_setup
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/metal_setup/command.sh
Finished bin_perturbation in 67 seconds [~ 587 test (73.28339575530586%) started, 214 in queue, 48 running]
Running Test helix_from_sequence
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helix_from_sequence/command.sh
Finished beta_strand_homodimer in 664 seconds [~ 588 test (73.40823970037454%) started, 213 in queue, 48 running]
Running Test hbnet_use_input_rot
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbnet_use_input_rot/command.sh
Finished AnchoredPDBCreator in 146 seconds [~ 589 test (73.5330836454432%) started, 212 in queue, 48 running]
Running Test classic_relax_1a19
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/classic_relax_1a19/command.sh
Finished simple_dna_test in 164 seconds [~ 590 test (73.65792759051186%) started, 211 in queue, 48 running]
Running Test buried_area_filter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/buried_area_filter/command.sh
Finished smallmover_resselector in 60 seconds [~ 591 test (73.78277153558052%) started, 210 in queue, 48 running]
Running Test DARC_sampling_on_the_fly
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DARC_sampling_on_the_fly/command.sh
Finished metalloprotein_abrelax in 119 seconds [~ 592 test (73.90761548064918%) started, 209 in queue, 48 running]
Running Test DARC_make_ray_files
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DARC_make_ray_files/command.sh
Finished rama_mutation_selector in 62 seconds [~ 593 test (74.03245942571785%) started, 208 in queue, 48 running]
Running Test ConsensusLoopDesign
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ConsensusLoopDesign/command.sh
Finished metropolis_hastings in 99 seconds [~ 594 test (74.15730337078652%) started, 207 in queue, 48 running]
Running Test write_mol_file
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/write_mol_file/command.sh
Finished symmetry_multicomponent in 83 seconds [~ 595 test (74.28214731585518%) started, 206 in queue, 48 running]
Running Test swa_rna_gagu_22_prepend_and_kic_close
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_22_prepend_and_kic_close/command.sh
Finished splice_out_H3_longer in 294 seconds [~ 596 test (74.40699126092385%) started, 205 in queue, 48 running]
Running Test swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide/command.sh
Finished swa_rna_gagu_18_rebuild_bulge in 85 seconds [~ 597 test (74.53183520599251%) started, 204 in queue, 48 running]
Running Test surface_docking
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/surface_docking/command.sh
Finished genkic_ramaprepro_sampling in 62 seconds [~ 598 test (74.65667915106117%) started, 203 in queue, 48 running]
Running Test stored_residue_subset
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/stored_residue_subset/command.sh
Finished UnsatSelector in 59 seconds [~ 599 test (74.78152309612983%) started, 202 in queue, 48 running]
Running Test rosetta_scripts_hbond_options
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosetta_scripts_hbond_options/command.sh
Finished fold_cst_new in 98 seconds [~ 600 test (74.90636704119851%) started, 201 in queue, 48 running]
Running Test resource_database_locator
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/resource_database_locator/command.sh
Finished mp_range_relax in 74 seconds [~ 601 test (75.03121098626717%) started, 200 in queue, 48 running]
Running Test loop_creation
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/loop_creation/command.sh
Finished minimize_with_elec_dens in 113 seconds [~ 602 test (75.15605493133583%) started, 199 in queue, 48 running]
Running Test longest_continuous_polar_segment_filter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/longest_continuous_polar_segment_filter/command.sh
Finished splice_out_L3_longer in 193 seconds [~ 603 test (75.28089887640449%) started, 198 in queue, 48 running]
Running Test jscore
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jscore/command.sh
Finished DARC_make_ray_files in 18 seconds [~ 604 test (75.40574282147315%) started, 197 in queue, 48 running]
Running Test genkic_dihedral_copying
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_dihedral_copying/command.sh
Finished PeptideCyclizeMover in 66 seconds [~ 605 test (75.53058676654182%) started, 196 in queue, 48 running]
Running Test density_refine_symm
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/density_refine_symm/command.sh
Finished mp_vis_emb in 40 seconds [~ 606 test (75.65543071161049%) started, 195 in queue, 48 running]
Running Test database_session_resource
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/database_session_resource/command.sh
Finished mf_fixbb_sc in 57 seconds [~ 607 test (75.78027465667915%) started, 194 in queue, 48 running]
Running Test copy_rotamer_mover
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/copy_rotamer_mover/command.sh
Finished broker in 106 seconds [~ 608 test (75.90511860174782%) started, 193 in queue, 48 running]
Running Test cluster
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cluster/command.sh
Finished repack_with_elec_dens in 82 seconds [~ 609 test (76.02996254681648%) started, 192 in queue, 48 running]
Running Test broker_membrane
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/broker_membrane/command.sh
Finished mp_score_jd2 in 42 seconds [~ 610 test (76.15480649188514%) started, 191 in queue, 48 running]
Running Test InterfaceDdG
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceDdG/command.sh
Finished DARC_sampling_on_the_fly in 28 seconds [~ 611 test (76.2796504369538%) started, 190 in queue, 48 running]
Running Test zinc_homodimer_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/zinc_homodimer_design/command.sh
Finished swa_rna_gagu_10_prepend_and_ccd_close in 91 seconds [~ 612 test (76.40449438202248%) started, 189 in queue, 48 running]
Running Test test_computed_saxs_spectrum
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/test_computed_saxs_spectrum/command.sh
Finished swm_protein_move_inside_coiledcoil_by_bond in 104 seconds [~ 613 test (76.52933832709114%) started, 188 in queue, 48 running]
Running Test symmetry_data_resource
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/symmetry_data_resource/command.sh
Finished ddG_scan in 80 seconds [~ 614 test (76.6541822721598%) started, 187 in queue, 48 running]
Running Test mp_transform_optimize
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_transform_optimize/command.sh
Finished symmetric_docking in 81 seconds [~ 615 test (76.77902621722846%) started, 186 in queue, 48 running]
Running Test make_and_perturb_bundle_multirepeat
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_and_perturb_bundle_multirepeat/command.sh
Finished mp_mutate_repack in 55 seconds [~ 616 test (76.90387016229712%) started, 185 in queue, 48 running]
Running Test gen_apo_grids
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/gen_apo_grids/command.sh
Finished grid_scores_features in 69 seconds [~ 617 test (77.02871410736579%) started, 184 in queue, 48 running]
Running Test cluster_filter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cluster_filter/command.sh
Finished buried_area_filter in 54 seconds [~ 618 test (77.15355805243446%) started, 183 in queue, 48 running]
Running Test binselector
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/binselector/command.sh
Finished swm_protein_CCDmove in 89 seconds [~ 619 test (77.27840199750312%) started, 182 in queue, 48 running]
Running Test abinitio
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/abinitio/command.sh
Finished swa_rna_gagu_23_append_and_kic_close in 89 seconds [~ 620 test (77.40324594257179%) started, 181 in queue, 48 running]
Running Test UBQ_E2_thioester_two_ubiquitins
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/UBQ_E2_thioester_two_ubiquitins/command.sh
Finished cluster in 29 seconds [~ 621 test (77.52808988764045%) started, 180 in queue, 48 running]
Running Test StrandHelixGeometryFilter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/StrandHelixGeometryFilter/command.sh
Finished metal_setup in 70 seconds [~ 622 test (77.65293383270911%) started, 179 in queue, 48 running]
Running Test StrandCurvatureByLevels
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/StrandCurvatureByLevels/command.sh
Finished jscore in 39 seconds [~ 623 test (77.77777777777777%) started, 178 in queue, 48 running]
Running Test HelixBendFilter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/HelixBendFilter/command.sh
Finished helix_from_sequence in 73 seconds [~ 624 test (77.90262172284645%) started, 177 in queue, 48 running]
Running Test zinc_homodimer_setup
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/zinc_homodimer_setup/command.sh
Finished density_denovo in 88 seconds [~ 625 test (78.02746566791511%) started, 176 in queue, 48 running]
Finished swa_rna_gagu_11_append_and_ccd_close in 82 seconds [~ 625 test (78.02746566791511%) started, 176 in queue, 47 running]
Running Test swa_rna_gagu_14_combine_long_loop_filtering
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_14_combine_long_loop_filtering/command.sh
Running Test swa_rna_gagu_12_helix_addition
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_12_helix_addition/command.sh
Finished rna_farfar_syn_chi_res in 101 seconds [~ 627 test (78.27715355805243%) started, 174 in queue, 48 running]
Running Test set_torsion
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/set_torsion/command.sh
Finished ConsensusLoopDesign in 59 seconds [~ 628 test (78.4019975031211%) started, 173 in queue, 48 running]
Running Test rna_puzzle6_U75G76A77_on_thread1
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_puzzle6_U75G76A77_on_thread1/command.sh
Finished cluster_filter in 27 seconds [~ 629 test (78.52684144818976%) started, 172 in queue, 48 running]
Running Test referencepose_mutateresidue
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/referencepose_mutateresidue/command.sh
Finished make_rot_lib in 103 seconds [~ 630 test (78.65168539325843%) started, 171 in queue, 48 running]
Running Test recces_turner
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/recces_turner/command.sh
Finished carbohydrates in 95 seconds [~ 631 test (78.7765293383271%) started, 170 in queue, 48 running]
Finished write_mol_file in 63 seconds [~ 632 test (78.90137328339576%) started, 169 in queue, 48 running]
Running Test pocket_measure
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pocket_measure/command.sh
Running Test phiselector
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/phiselector/command.sh
Finished stored_residue_subset in 59 seconds [~ 633 test (79.02621722846442%) started, 168 in queue, 48 running]
Finished swa_rna_gagu_14_combine_long_loop_filtering in 10 seconds [~ 633 test (79.02621722846442%) started, 168 in queue, 47 running]
Running Test ncaa_fixbb
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ncaa_fixbb/command.sh
Running Test mp_dock_setup
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_dock_setup/command.sh
Finished longest_continuous_polar_segment_filter in 53 seconds [~ 635 test (79.27590511860174%) started, 166 in queue, 48 running]
Running Test helical_bundle
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/helical_bundle/command.sh
Finished surface_docking in 62 seconds [~ 636 test (79.40074906367042%) started, 165 in queue, 48 running]
Running Test genkic_bin_setting
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_bin_setting/command.sh
Finished rna_denovo_base_pair_setup in 94 seconds [~ 637 test (79.52559300873908%) started, 164 in queue, 48 running]
Finished copy_rotamer_mover in 52 seconds [~ 637 test (79.52559300873908%) started, 164 in queue, 47 running]
Running Test features_pdb
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features_pdb/command.sh
Running Test cst_info
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cst_info/command.sh
Finished genkic_dihedral_copying in 55 seconds [~ 639 test (79.7752808988764%) started, 162 in queue, 48 running]
Running Test binselector_probins
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/binselector_probins/command.sh
Finished broker_membrane in 50 seconds [~ 640 test (79.90012484394506%) started, 161 in queue, 48 running]
Running Test backbonegridsampler
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/backbonegridsampler/command.sh
Finished loop_creation in 62 seconds [~ 641 test (80.02496878901373%) started, 160 in queue, 48 running]
Running Test add_job_pair_data
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/add_job_pair_data/command.sh
Finished resource_database_locator in 67 seconds [~ 642 test (80.1498127340824%) started, 159 in queue, 48 running]
Running Test SecondaryStructureFilter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/SecondaryStructureFilter/command.sh
Finished database_session_resource in 67 seconds [~ 643 test (80.27465667915106%) started, 158 in queue, 48 running]
Running Test OversaturatedHbondAcceptorFilter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/OversaturatedHbondAcceptorFilter/command.sh
Finished make_and_perturb_bundle_multirepeat in 52 seconds [~ 644 test (80.39950062421973%) started, 157 in queue, 48 running]
Running Test MutateResidue_selector
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/MutateResidue_selector/command.sh
Finished symmetry_data_resource in 59 seconds [~ 645 test (80.52434456928839%) started, 156 in queue, 48 running]
Running Test LoopLengthChange
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/LoopLengthChange/command.sh
Finished make_symmdef_file in 144 seconds [~ 646 test (80.64918851435705%) started, 155 in queue, 48 running]
Running Test InterfaceAnalyzer_resfile
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_resfile/command.sh
Finished mp_transform_optimize in 63 seconds [~ 647 test (80.77403245942571%) started, 154 in queue, 48 running]
Running Test InterfaceAnalyzer_bothpack
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_bothpack/command.sh
Finished swa_rna_gagu_22_prepend_and_kic_close in 91 seconds [~ 648 test (80.89887640449439%) started, 153 in queue, 48 running]
Running Test FilterReportAsPoseExtraScoresMover
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/FilterReportAsPoseExtraScoresMover/command.sh
Finished min_pack_min in 157 seconds [~ 649 test (81.02372034956305%) started, 152 in queue, 48 running]
Running Test unfolded_state_energy_calc
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/unfolded_state_energy_calc/command.sh
Finished binselector in 53 seconds [~ 650 test (81.14856429463171%) started, 151 in queue, 48 running]
Running Test real_virt_mover
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/real_virt_mover/command.sh
Finished swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide in 92 seconds [~ 651 test (81.27340823970037%) started, 150 in queue, 48 running]
Running Test pwsho
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pwsho/command.sh
Finished zinc_homodimer_setup in 44 seconds [~ 652 test (81.39825218476904%) started, 149 in queue, 48 running]
Running Test mp_interface_statistics
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_interface_statistics/command.sh
Finished density_refine_symm in 84 seconds [~ 653 test (81.5230961298377%) started, 148 in queue, 48 running]
Running Test mp_dock_prepack
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_dock_prepack/command.sh
Finished gen_apo_grids in 68 seconds [~ 654 test (81.64794007490637%) started, 147 in queue, 48 running]
Running Test hbondstoresidue_selector
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hbondstoresidue_selector/command.sh
Finished pocket_measure in 38 seconds [~ 655 test (81.77278401997503%) started, 146 in queue, 48 running]
Running Test genkic_bin_sampling
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/genkic_bin_sampling/command.sh
Finished StrandHelixGeometryFilter in 61 seconds [~ 656 test (81.8976279650437%) started, 145 in queue, 48 running]
Running Test PeptideStubMover_prependRepeat
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/PeptideStubMover_prependRepeat/command.sh
Finished set_torsion in 52 seconds [~ 657 test (82.02247191011236%) started, 144 in queue, 48 running]
Running Test ModifyVariantTypeMover
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ModifyVariantTypeMover/command.sh
Finished StrandCurvatureByLevels in 60 seconds [~ 658 test (82.14731585518102%) started, 143 in queue, 48 running]
Finished HelixBendFilter in 58 seconds [~ 658 test (82.14731585518102%) started, 143 in queue, 47 running]
Running Test InterfaceAnalyzer_prepack
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_prepack/command.sh
Running Test FlipChirality
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/FlipChirality/command.sh
Finished genkic_bin_setting in 43 seconds [~ 660 test (82.39700374531836%) started, 141 in queue, 48 running]
Running Test AddConstraintsToCurrentConformationMover
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/AddConstraintsToCurrentConformationMover/command.sh
Finished test_computed_saxs_spectrum in 89 seconds [~ 661 test (82.52184769038702%) started, 140 in queue, 48 running]
Running Test vancomycin
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/vancomycin/command.sh
Finished referencepose_mutateresidue in 53 seconds [~ 662 test (82.64669163545568%) started, 139 in queue, 48 running]
Running Test swa_rna_gagu_03_append_to_silent
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_03_append_to_silent/command.sh
Finished classic_relax_1a19 in 132 seconds [~ 663 test (82.77153558052434%) started, 138 in queue, 48 running]
Running Test silent2frag
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/silent2frag/command.sh
Finished helical_bundle in 50 seconds [~ 664 test (82.896379525593%) started, 137 in queue, 48 running]
Running Test rb_recces
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rb_recces/command.sh
Finished backbonegridsampler in 48 seconds [~ 665 test (83.02122347066167%) started, 136 in queue, 48 running]
Running Test mpi_multistate_design
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mpi_multistate_design/command.sh
Finished abinitio in 77 seconds [~ 666 test (83.14606741573034%) started, 135 in queue, 48 running]
Running Test assemble_domains_jd2
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/assemble_domains_jd2/command.sh
Finished phiselector in 54 seconds [~ 667 test (83.270911360799%) started, 134 in queue, 48 running]
Running Test antibody_numbering_converter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/antibody_numbering_converter/command.sh
Finished rna_puzzle6_U75G76A77_on_thread1 in 62 seconds [~ 668 test (83.39575530586767%) started, 133 in queue, 48 running]
Running Test site_constraint
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/site_constraint/command.sh
Finished hbnet_use_input_rot in 140 seconds [~ 669 test (83.52059925093633%) started, 132 in queue, 48 running]
Running Test rna_farfar_noncanonical_hairpin
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_farfar_noncanonical_hairpin/command.sh
Finished InterfaceDdG in 101 seconds [~ 670 test (83.64544319600499%) started, 131 in queue, 48 running]
Running Test r_pdb2top
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/r_pdb2top/command.sh
Finished binselector_probins in 52 seconds [~ 671 test (83.77028714107365%) started, 130 in queue, 48 running]
Running Test pepspec_anchor_dock
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pepspec_anchor_dock/command.sh
Finished backrub in 315 seconds [~ 672 test (83.89513108614233%) started, 129 in queue, 48 running]
Running Test identify_cdr_clusters
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/identify_cdr_clusters/command.sh
Finished cst_info in 56 seconds [~ 673 test (84.01997503121099%) started, 128 in queue, 48 running]
Running Test fragment_picker
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fragment_picker/command.sh
Finished silent2frag in 10 seconds [~ 674 test (84.14481897627965%) started, 127 in queue, 48 running]
Running Test phosphonate
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/phosphonate/command.sh
Finished mp_dock_setup in 61 seconds [~ 675 test (84.26966292134831%) started, 126 in queue, 48 running]
Running Test metalloprotein_broker
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/metalloprotein_broker/command.sh
Finished favor_native_residue in 219 seconds [~ 676 test (84.39450686641698%) started, 125 in queue, 48 running]
Running Test include_cc_check
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/include_cc_check/command.sh
Finished SecondaryStructureFilter in 56 seconds [~ 677 test (84.51935081148564%) started, 124 in queue, 48 running]
Running Test docking_prepack
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_prepack/command.sh
Finished swa_rna_gagu_12_helix_addition in 76 seconds [~ 678 test (84.64419475655431%) started, 123 in queue, 48 running]
Running Test InterfaceAnalyzer_tracer
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_tracer/command.sh
Finished include_cc_check in 0 seconds [~ 679 test (84.76903870162297%) started, 122 in queue, 48 running]
Running Test InterfaceAnalyzer_allscores
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer_allscores/command.sh
Finished add_job_pair_data in 58 seconds [~ 680 test (84.89388264669164%) started, 121 in queue, 48 running]
Running Test InterfaceAnalyzer
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/InterfaceAnalyzer/command.sh
Finished rosetta_scripts_hbond_options in 125 seconds [~ 681 test (85.0187265917603%) started, 120 in queue, 48 running]
Finished r_pdb2top in 11 seconds [~ 681 test (85.0187265917603%) started, 120 in queue, 47 running]
Running Test swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump/command.sh
Running Test swa_rna_gagu_17_append_floating_base
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_17_append_floating_base/command.sh
Finished site_constraint in 15 seconds [~ 683 test (85.26841448189762%) started, 118 in queue, 48 running]
Running Test swa_rna_gagu_08_append_dinucleotide
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_08_append_dinucleotide/command.sh
Finished mp_interface_statistics in 37 seconds [~ 684 test (85.3932584269663%) started, 117 in queue, 48 running]
Running Test swa_rna_gagu_06_append_to_3primeterminus
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_06_append_to_3primeterminus/command.sh
Finished InterfaceAnalyzer_resfile in 49 seconds [~ 685 test (85.51810237203496%) started, 116 in queue, 48 running]
Running Test swa_rna_gagu_05_prepend_to_5primeterminus
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_05_prepend_to_5primeterminus/command.sh
Finished mp_dock_prepack in 38 seconds [~ 686 test (85.64294631710362%) started, 115 in queue, 48 running]
Running Test swa_rna_gagu_02_prepend
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_02_prepend/command.sh
Finished features_pdb in 69 seconds [~ 687 test (85.76779026217228%) started, 114 in queue, 48 running]
Running Test swa_rna_gagu_01_append
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_01_append/command.sh
Finished MutateResidue_selector in 57 seconds [~ 688 test (85.89263420724095%) started, 113 in queue, 48 running]
Running Test struc_set_fragment_picker
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/struc_set_fragment_picker/command.sh
Finished OversaturatedHbondAcceptorFilter in 59 seconds [~ 689 test (86.01747815230961%) started, 112 in queue, 48 running]
Finished InterfaceAnalyzer_bothpack in 52 seconds [~ 689 test (86.01747815230961%) started, 112 in queue, 47 running]
Running Test rna_helix
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_helix/command.sh
Running Test rna_denovo_grid_vdw
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_grid_vdw/command.sh
Finished LoopLengthChange in 59 seconds [~ 691 test (86.26716604244695%) started, 110 in queue, 48 running]
Running Test hotspot_stub_constraints
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hotspot_stub_constraints/command.sh
Finished unfolded_state_energy_calc in 54 seconds [~ 692 test (86.3920099875156%) started, 109 in queue, 48 running]
Running Test glycan_clash_check
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/glycan_clash_check/command.sh
Finished recces_turner in 86 seconds [~ 693 test (86.51685393258427%) started, 108 in queue, 48 running]
Running Test geometric_solvation
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/geometric_solvation/command.sh
Finished fragment_picker in 24 seconds [~ 694 test (86.64169787765293%) started, 107 in queue, 48 running]
Running Test ProQ
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ProQ/command.sh
Finished FilterReportAsPoseExtraScoresMover in 58 seconds [~ 695 test (86.76654182272159%) started, 106 in queue, 48 running]
Running Test swm_rna_move_align_dock
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_move_align_dock/command.sh
Finished hbondstoresidue_selector in 53 seconds [~ 696 test (86.89138576779027%) started, 105 in queue, 48 running]
Running Test swa_rna_gagu_20_append_floating_base_by_jump
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_20_append_floating_base_by_jump/command.sh
Finished metalloprotein_broker in 27 seconds [~ 697 test (87.01622971285893%) started, 104 in queue, 48 running]
Running Test swa_rna_gagu_19_prepend_floating_base_by_jump
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_19_prepend_floating_base_by_jump/command.sh
Finished InterfaceAnalyzer_prepack in 44 seconds [~ 698 test (87.14107365792759%) started, 103 in queue, 48 running]
Running Test swa_rna_gagu_07_prepend_dinucleotide
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_07_prepend_dinucleotide/command.sh
Finished real_virt_mover in 62 seconds [~ 699 test (87.26591760299625%) started, 102 in queue, 48 running]
Running Test sequence_tolerance
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sequence_tolerance/command.sh
Finished genkic_bin_sampling in 53 seconds [~ 700 test (87.39076154806492%) started, 101 in queue, 48 running]
Running Test score_jd2
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/score_jd2/command.sh
Finished zinc_homodimer_design in 138 seconds [~ 701 test (87.51560549313358%) started, 100 in queue, 48 running]
Running Test orbitals
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/orbitals/command.sh
Finished ModifyVariantTypeMover in 48 seconds [~ 702 test (87.64044943820225%) started, 99 in queue, 48 running]
Finished antibody_numbering_converter in 39 seconds [~ 702 test (87.64044943820225%) started, 99 in queue, 47 running]
Running Test mp_transform
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_transform/command.sh
Running Test fragmentpicker_integration_demo
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fragmentpicker_integration_demo/command.sh
Finished identify_cdr_clusters in 38 seconds [~ 704 test (87.89013732833958%) started, 97 in queue, 48 running]
Running Test fold_and_dock
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fold_and_dock/command.sh
Finished phosphonate in 37 seconds [~ 705 test (88.01498127340824%) started, 96 in queue, 48 running]
Running Test extract_atomtree_diffs
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/extract_atomtree_diffs/command.sh
Finished PeptideStubMover_prependRepeat in 58 seconds [~ 706 test (88.1398252184769%) started, 95 in queue, 48 running]
Running Test docking_low_res
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_low_res/command.sh
Finished InterfaceAnalyzer_tracer in 37 seconds [~ 707 test (88.26466916354556%) started, 94 in queue, 48 running]
Running Test swm_protein_preminimize
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_protein_preminimize/command.sh
Finished glycan_clash_check in 20 seconds [~ 708 test (88.38951310861424%) started, 93 in queue, 48 running]
Running Test swm_protein_from_scratch
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_protein_from_scratch/command.sh
Finished InterfaceAnalyzer_allscores in 37 seconds [~ 709 test (88.5143570536829%) started, 92 in queue, 48 running]
Running Test swa_rna_loop_clusterer
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_loop_clusterer/command.sh
Finished AddConstraintsToCurrentConformationMover in 57 seconds [~ 710 test (88.63920099875156%) started, 91 in queue, 48 running]
Running Test shobuns
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/shobuns/command.sh
Finished assemble_domains_jd2 in 51 seconds [~ 711 test (88.76404494382022%) started, 90 in queue, 48 running]
Running Test rna_ribosome_tether
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_ribosome_tether/command.sh
Finished FlipChirality in 60 seconds [~ 712 test (88.88888888888889%) started, 89 in queue, 48 running]
Running Test rna_minimize
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_minimize/command.sh
Finished struc_set_fragment_picker in 31 seconds [~ 713 test (89.01373283395755%) started, 88 in queue, 48 running]
Running Test rna_denovo_bps_helix_ends
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_bps_helix_ends/command.sh
Finished swa_rna_gagu_03_append_to_silent in 61 seconds [~ 714 test (89.13857677902622%) started, 87 in queue, 48 running]
Running Test rna_denovo_bps_fixed_ends
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_denovo_bps_fixed_ends/command.sh
Finished fragmentpicker_integration_demo in 20 seconds [~ 715 test (89.26342072409489%) started, 86 in queue, 48 running]
Finished swa_rna_loop_clusterer in 9 seconds [~ 715 test (89.26342072409489%) started, 86 in queue, 47 running]
Running Test pna
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pna/command.sh
Running Test per_residue_energies
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/per_residue_energies/command.sh
Finished pwsho in 84 seconds [~ 717 test (89.51310861423221%) started, 84 in queue, 48 running]
Running Test match_1c2t
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/match_1c2t/command.sh
Finished swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump in 48 seconds [~ 718 test (89.63795255930087%) started, 83 in queue, 48 running]
Running Test jrelax
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/jrelax/command.sh
Finished rna_denovo_grid_vdw in 40 seconds [~ 719 test (89.76279650436953%) started, 82 in queue, 48 running]
Running Test ig_dump
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ig_dump/command.sh
Finished antibody_H3 in 1467 seconds [~ 720 test (89.88764044943821%) started, 81 in queue, 48 running]
Finished hotspot_stub_constraints in 39 seconds [~ 720 test (89.88764044943821%) started, 81 in queue, 47 running]
Running Test erraser_minimize
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/erraser_minimize/command.sh
Running Test density_tools
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/density_tools/command.sh
Finished swa_rna_gagu_08_append_dinucleotide in 49 seconds [~ 722 test (90.13732833957553%) started, 79 in queue, 48 running]
Running Test database_jd2_io
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/database_jd2_io/command.sh
Finished mpi_multistate_design in 67 seconds [~ 723 test (90.2621722846442%) started, 78 in queue, 48 running]
Finished swa_rna_gagu_06_append_to_3primeterminus in 50 seconds [~ 723 test (90.2621722846442%) started, 78 in queue, 47 running]
Finished swa_rna_gagu_05_prepend_to_5primeterminus in 48 seconds [~ 723 test (90.2621722846442%) started, 78 in queue, 46 running]
Running Test c-term_conjugation
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/c-term_conjugation/command.sh
Running Test database_jd2_compact_io
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/database_jd2_compact_io/command.sh
Running Test angle_recovery_stats
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/angle_recovery_stats/command.sh
Finished swa_rna_gagu_02_prepend in 48 seconds [~ 726 test (90.6367041198502%) started, 75 in queue, 48 running]
Running Test swa_rna_loop_sampler
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_loop_sampler/command.sh
Finished swa_rna_gagu_17_append_floating_base in 55 seconds [~ 727 test (90.76154806491886%) started, 74 in queue, 48 running]
Running Test mg_modeler
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mg_modeler/command.sh
Finished pepspec_anchor_dock in 66 seconds [~ 728 test (90.88639200998752%) started, 73 in queue, 48 running]
Running Test gen_lig_grids
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/gen_lig_grids/command.sh
Finished swa_rna_gagu_01_append in 50 seconds [~ 729 test (91.01123595505618%) started, 72 in queue, 48 running]
Running Test distances
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/distances/command.sh
Finished rna_helix in 50 seconds [~ 730 test (91.13607990012484%) started, 71 in queue, 48 running]
Finished fold_and_dock in 30 seconds [~ 730 test (91.13607990012484%) started, 71 in queue, 47 running]
Running Test swm_rna_move_two_strands
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swm_rna_move_two_strands/command.sh
Running Test cs_rosetta_rna
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cs_rosetta_rna/command.sh
Finished geometric_solvation in 44 seconds [~ 732 test (91.38576779026218%) started, 69 in queue, 48 running]
Running Test super_aln
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/super_aln/command.sh
Finished rb_recces in 77 seconds [~ 733 test (91.51061173533084%) started, 68 in queue, 48 running]
Running Test rotamer_recovery_compare_two_structures
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rotamer_recovery_compare_two_structures/command.sh
Finished mp_transform in 36 seconds [~ 734 test (91.6354556803995%) started, 67 in queue, 48 running]
Running Test pH_mode
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pH_mode/command.sh
Finished UBQ_E2_thioester_two_ubiquitins in 154 seconds [~ 735 test (91.76029962546816%) started, 66 in queue, 48 running]
Running Test header_using_check
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/header_using_check/command.sh
Finished header_using_check in 0 seconds [~ 736 test (91.88514357053683%) started, 65 in queue, 48 running]
Running Test fix_alignment_to_match_pdb
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fix_alignment_to_match_pdb/command.sh
Finished angle_recovery_stats in 11 seconds [~ 737 test (92.00998751560549%) started, 64 in queue, 48 running]
Running Test docking_local_refine_min
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/docking_local_refine_min/command.sh
Finished ProQ in 50 seconds [~ 738 test (92.13483146067416%) started, 63 in queue, 48 running]
Running Test sweep_respair_energies
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/sweep_respair_energies/command.sh
Finished rna_denovo_bps_helix_ends in 28 seconds [~ 739 test (92.25967540574283%) started, 62 in queue, 48 running]
Running Test swa_rna_gagu_04_clustering
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/swa_rna_gagu_04_clustering/command.sh
Finished swa_rna_gagu_20_append_floating_base_by_jump in 47 seconds [~ 740 test (92.38451935081149%) started, 61 in queue, 48 running]
Running Test select_best_unique_ligand_poses
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/select_best_unique_ligand_poses/command.sh
Finished swa_rna_gagu_19_prepend_floating_base_by_jump in 46 seconds [~ 741 test (92.50936329588015%) started, 60 in queue, 48 running]
Running Test pocket_suggest_targets
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/pocket_suggest_targets/command.sh
Finished docking_prepack in 71 seconds [~ 742 test (92.63420724094881%) started, 59 in queue, 48 running]
Finished swa_rna_gagu_07_prepend_dinucleotide in 47 seconds [~ 742 test (92.63420724094881%) started, 59 in queue, 47 running]
Running Test mp_loadtime
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_loadtime/command.sh
Running Test mg_modeler_lores
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mg_modeler_lores/command.sh
Finished c-term_conjugation in 17 seconds [~ 744 test (92.88389513108615%) started, 57 in queue, 48 running]
Running Test measure_lcaa_radii
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/measure_lcaa_radii/command.sh
Finished rna_ribosome_tether in 33 seconds [~ 745 test (93.00873907615481%) started, 56 in queue, 48 running]
Running Test contactMap
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/contactMap/command.sh
Finished swm_rna_move_align_dock in 52 seconds [~ 746 test (93.13358302122347%) started, 55 in queue, 48 running]
Finished orbitals in 47 seconds [~ 746 test (93.13358302122347%) started, 55 in queue, 47 running]
Finished extract_atomtree_diffs in 41 seconds [~ 746 test (93.13358302122347%) started, 55 in queue, 46 running]
Finished super_aln in 11 seconds [~ 746 test (93.13358302122347%) started, 55 in queue, 45 running]
Running Test buried_unsat_kinemage
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/buried_unsat_kinemage/command.sh
Running Test constel
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/constel/command.sh
Running Test RescorePDDF
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/RescorePDDF/command.sh
Running Test template_features
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/template_features/command.sh
Finished rna_denovo_bps_fixed_ends in 30 seconds [~ 750 test (93.63295880149813%) started, 51 in queue, 48 running]
Running Test noe_assignment
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/noe_assignment/command.sh
Finished swm_protein_preminimize in 38 seconds [~ 751 test (93.7578027465668%) started, 50 in queue, 48 running]
Running Test motif_extraction
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/motif_extraction/command.sh
Finished shobuns in 37 seconds [~ 752 test (93.88264669163546%) started, 49 in queue, 48 running]
Running Test cstfile_to_theozyme_pdb
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cstfile_to_theozyme_pdb/command.sh
Finished sequence_tolerance in 51 seconds [~ 753 test (94.00749063670412%) started, 48 in queue, 48 running]
Running Test rna_screen_phosphates
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_screen_phosphates/command.sh
Finished vancomycin in 95 seconds [~ 754 test (94.13233458177278%) started, 47 in queue, 48 running]
Finished docking_low_res in 41 seconds [~ 754 test (94.13233458177278%) started, 47 in queue, 47 running]
Running Test rna_score
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_score/command.sh
Running Test nucleobase_sample_around
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/nucleobase_sample_around/command.sh
Finished per_residue_energies in 30 seconds [~ 756 test (94.38202247191012%) started, 45 in queue, 48 running]
Running Test fit_helixparams_rms
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fit_helixparams_rms/command.sh
Finished swa_rna_gagu_04_clustering in 9 seconds [~ 757 test (94.50686641697878%) started, 44 in queue, 48 running]
Running Test cluster_calibur
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/cluster_calibur/command.sh
Calibur clustering has been broken since its inception.
The external version was never successfully integration tested because
of typos in the integration test. The version ported to Rosetta has never
worked either.
Since now it causes hard-failures on release_debug, it needs to be
deactivated for now.
Finished match_1c2t in 31 seconds [~ 758 test (94.63171036204744%) started, 43 in queue, 48 running]
Finished cluster_calibur in 0 seconds [~ 758 test (94.63171036204744%) started, 43 in queue, 47 running]
Running Test DARC_shapeonly
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DARC_shapeonly/command.sh
Running Test test_idealize
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/test_idealize/command.sh
Finished select_best_unique_ligand_poses in 11 seconds [~ 760 test (94.88139825218477%) started, 41 in queue, 48 running]
Running Test rna_minimize_6D_loop_close
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_minimize_6D_loop_close/command.sh
Finished score_jd2 in 56 seconds [~ 761 test (95.00624219725343%) started, 40 in queue, 48 running]
Finished ig_dump in 31 seconds [~ 761 test (95.00624219725343%) started, 40 in queue, 47 running]
Running Test report_hbonds_for_plugin
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/report_hbonds_for_plugin/command.sh
Running Test per_residue_sc_sasa
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/per_residue_sc_sasa/command.sh
Finished density_tools in 32 seconds [~ 763 test (95.25593008739077%) started, 38 in queue, 48 running]
Running Test oop_create
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/oop_create/command.sh
Finished contactMap in 11 seconds [~ 764 test (95.38077403245943%) started, 37 in queue, 48 running]
Running Test minimize_6Dloopclose
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/minimize_6Dloopclose/command.sh
Finished template_features in 11 seconds [~ 765 test (95.50561797752809%) started, 36 in queue, 48 running]
Running Test ld_converter
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ld_converter/command.sh
Finished swm_protein_from_scratch in 48 seconds [~ 766 test (95.63046192259675%) started, 35 in queue, 48 running]
Running Test features_database_schema
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features_database_schema/command.sh
Finished distances in 30 seconds [~ 767 test (95.75530586766541%) started, 34 in queue, 48 running]
Running Test centroid_disulfide_scores
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/centroid_disulfide_scores/command.sh
grep: full_minimize_temp_1.out: No such file or directory
Finished erraser_minimize in 35 seconds [~ 768 test (95.88014981273409%) started, 33 in queue, 48 running]
Finished gen_lig_grids in 30 seconds [~ 768 test (95.88014981273409%) started, 33 in queue, 47 running]
Running Test DARC_electrostatics
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/DARC_electrostatics/command.sh
Running Test rna_suitename
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_suitename/command.sh
Finished mp_loadtime in 15 seconds [~ 770 test (96.12983770287141%) started, 31 in queue, 48 running]
Running Test rna_add_WC_stats
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_add_WC_stats/command.sh
Finished cstfile_to_theozyme_pdb in 12 seconds [~ 771 test (96.25468164794007%) started, 30 in queue, 48 running]
Running Test rings
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rings/command.sh
Finished swa_rna_loop_sampler in 34 seconds [~ 772 test (96.37952559300874%) started, 29 in queue, 48 running]
Running Test ralford_dump_rotamers
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/ralford_dump_rotamers/command.sh
Finished jrelax in 41 seconds [~ 773 test (96.5043695380774%) started, 28 in queue, 48 running]
Running Test mp_span_from_pdb
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_span_from_pdb/command.sh
Finished test_idealize in 10 seconds [~ 774 test (96.62921348314607%) started, 27 in queue, 48 running]
Running Test make_exemplar
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/make_exemplar/command.sh
Finished rna_minimize in 50 seconds [~ 775 test (96.75405742821474%) started, 26 in queue, 48 running]
Finished DARC_shapeonly in 11 seconds [~ 775 test (96.75405742821474%) started, 26 in queue, 47 running]
Running Test fit_helixparams_a3b
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fit_helixparams_a3b/command.sh
Running Test loop_hash
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/loop_hash/command.sh
Finished rotamer_recovery_compare_two_structures in 27 seconds [~ 777 test (97.00374531835206%) started, 24 in queue, 48 running]
Running Test code_template_tests_src
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/code_template_tests_src/command.sh
Finished pH_mode in 27 seconds [~ 778 test (97.12858926342072%) started, 23 in queue, 48 running]
Running Test calculate_sasa
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/calculate_sasa/command.sh
Finished rna_minimize_6D_loop_close in 10 seconds [~ 779 test (97.25343320848938%) started, 22 in queue, 48 running]
Running Test CCD_loop_closure
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/CCD_loop_closure/command.sh
Finished swm_rna_move_two_strands in 32 seconds [~ 780 test (97.37827715355806%) started, 21 in queue, 48 running]
Finished report_hbonds_for_plugin in 10 seconds [~ 780 test (97.37827715355806%) started, 21 in queue, 47 running]
Running Test test_d_l_readin
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/test_d_l_readin/command.sh
Running Test rna_cluster
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rna_cluster/command.sh
Finished per_residue_sc_sasa in 10 seconds [~ 782 test (97.62796504369538%) started, 19 in queue, 48 running]
Running Test r_rmsf
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/r_rmsf/command.sh
Finished fit_helixparams_rms in 14 seconds [~ 783 test (97.75280898876404%) started, 18 in queue, 48 running]
Running Test number_of_residuetypes
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/number_of_residuetypes/command.sh
test_general
test_abstract
test_mover
test_ws_energy_method
test_1b_energy_method
test_2b_energy_method
test_task_operation
test_features_reporter
test_residue_selector
test_residue_selector_in_core
test_crosslinker_mover_helper
test_util
Encounter error while executing: ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/code_template_tests_src/command.sh
*** Test code_template_tests_src did not run! Check your --mode flag and paths. [2024-09-12 09:37:01.513896]
Finished noe_assignment in 17 seconds [~ 784 test (97.8776529338327%) started, 17 in queue, 48 running]
Running Test non-canonical_connectivities
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/non-canonical_connectivities/command.sh
Finished code_template_tests_src in 2 seconds [~ 785 test (98.00249687890137%) started, 16 in queue, 48 running]
Running Test fit_helixparams
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/fit_helixparams/command.sh
Finished sweep_respair_energies in 25 seconds [~ 786 test (98.12734082397004%) started, 15 in queue, 48 running]
Running Test combine_silent
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/combine_silent/command.sh
Finished minimize_6Dloopclose in 10 seconds [~ 787 test (98.2521847690387%) started, 14 in queue, 48 running]
Running Test BuildPeptide
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/BuildPeptide/command.sh
Finished loop_hash in 4 seconds [~ 788 test (98.37702871410737%) started, 13 in queue, 48 running]
Running Test score_aln
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/score_aln/command.sh
Finished mp_span_from_pdb in 5 seconds [~ 789 test (98.50187265917603%) started, 12 in queue, 48 running]
Running Test rosetta_scripts_info
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/rosetta_scripts_info/command.sh
Finished fix_alignment_to_match_pdb in 30 seconds [~ 790 test (98.62671660424469%) started, 11 in queue, 48 running]
Running Test mp_quick_relax
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/mp_quick_relax/command.sh
Finished rna_suitename in 9 seconds [~ 791 test (98.75156054931335%) started, 10 in queue, 48 running]
Finished rna_add_WC_stats in 9 seconds [~ 791 test (98.75156054931335%) started, 10 in queue, 47 running]
Finished score_aln in 1 seconds [~ 791 test (98.75156054931335%) started, 10 in queue, 46 running]
Finished mp_quick_relax in 0 seconds [~ 791 test (98.75156054931335%) started, 10 in queue, 45 running]
Running Test hierarchical_clustering
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/hierarchical_clustering/command.sh
Running Test features_scientific_benchmark
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features_scientific_benchmark/command.sh
Running Test features_postgres
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/features_postgres/command.sh
Running Test extract_pdbs
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/extract_pdbs/command.sh
Finished features_scientific_benchmark in 0 seconds [~ 795 test (99.25093632958801%) started, 6 in queue, 48 running]
Finished features_postgres in 0 seconds [~ 795 test (99.25093632958801%) started, 6 in queue, 47 running]
Running Test crossaln
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/crossaln/command.sh
Running Test code_template_tests_unit
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/code_template_tests_unit/command.sh
Finished code_template_tests_unit in 0 seconds [~ 797 test (99.50062421972534%) started, 4 in queue, 48 running]
Running Test code_template_tests_app
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/code_template_tests_app/command.sh
Finished motif_extraction in 21 seconds [~ 798 test (99.62546816479401%) started, 3 in queue, 48 running]
Running Test central_class_modification
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/central_class_modification/command.sh
Finished mg_modeler in 41 seconds [~ 799 test (99.75031210986268%) started, 2 in queue, 48 running]
Finished code_template_tests_app in 0 seconds [~ 799 test (99.75031210986268%) started, 2 in queue, 47 running]
Finished central_class_modification in 0 seconds [~ 799 test (99.75031210986268%) started, 2 in queue, 46 running]
Running Test Werror_check
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/Werror_check/command.sh
Running Test RescoreSAXS
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/RescoreSAXS/command.sh
Running Test HOW_TO_MAKE_TESTS
ulimit -t 3600 && bash /home/benchmark/rosetta/tests/integration/new/HOW_TO_MAKE_TESTS/command.sh
Checking the status of the -Werror option in the Scons build settings:
PASS
Checking the status of the -Werror option in the CMake build settings:
PASS
Finished DARC_electrostatics in 10 seconds [~ 801 test (100.0%) started, 0 in queue, 47 running]
Finished extract_pdbs in 1 seconds [~ 801 test (100.0%) started, 0 in queue, 46 running]
Finished Werror_check in 0 seconds [~ 801 test (100.0%) started, 0 in queue, 45 running]
Finished RescoreSAXS in 0 seconds [~ 801 test (100.0%) started, 0 in queue, 44 running]
Finished HOW_TO_MAKE_TESTS in 0 seconds [~ 801 test (100.0%) started, 0 in queue, 43 running]
Finished centroid_disulfide_scores in 11 seconds [~ 801 test (100.0%) started, 0 in queue, 42 running]
Finished rings in 10 seconds [~ 801 test (100.0%) started, 0 in queue, 41 running]
Finished fit_helixparams_a3b in 8 seconds [~ 801 test (100.0%) started, 0 in queue, 40 running]
Finished hierarchical_clustering in 2 seconds [~ 801 test (100.0%) started, 0 in queue, 39 running]
Finished crossaln in 2 seconds [~ 801 test (100.0%) started, 0 in queue, 38 running]
Finished RescorePDDF in 25 seconds [~ 801 test (100.0%) started, 0 in queue, 37 running]
Finished fit_helixparams in 5 seconds [~ 801 test (100.0%) started, 0 in queue, 36 running]
Finished pocket_suggest_targets in 29 seconds [~ 801 test (100.0%) started, 0 in queue, 35 running]
Finished ralford_dump_rotamers in 10 seconds [~ 801 test (100.0%) started, 0 in queue, 34 running]
Finished cs_rosetta_rna in 39 seconds [~ 801 test (100.0%) started, 0 in queue, 33 running]
Finished docking_local_refine_min in 33 seconds [~ 801 test (100.0%) started, 0 in queue, 32 running]
Finished calculate_sasa in 8 seconds [~ 801 test (100.0%) started, 0 in queue, 31 running]
Finished test_d_l_readin in 7 seconds [~ 801 test (100.0%) started, 0 in queue, 30 running]
Finished constel in 27 seconds [~ 801 test (100.0%) started, 0 in queue, 29 running]
Finished rna_cluster in 8 seconds [~ 801 test (100.0%) started, 0 in queue, 28 running]
Finished number_of_residuetypes in 7 seconds [~ 801 test (100.0%) started, 0 in queue, 27 running]
Finished r_rmsf in 8 seconds [~ 801 test (100.0%) started, 0 in queue, 26 running]
Finished nucleobase_sample_around in 24 seconds [~ 801 test (100.0%) started, 0 in queue, 25 running]
Finished BuildPeptide in 6 seconds [~ 801 test (100.0%) started, 0 in queue, 24 running]
Finished measure_lcaa_radii in 29 seconds [~ 801 test (100.0%) started, 0 in queue, 23 running]
Finished combine_silent in 7 seconds [~ 801 test (100.0%) started, 0 in queue, 22 running]
Finished mg_modeler_lores in 30 seconds [~ 801 test (100.0%) started, 0 in queue, 21 running]
Finished rna_screen_phosphates in 25 seconds [~ 801 test (100.0%) started, 0 in queue, 20 running]
Finished buried_unsat_kinemage in 29 seconds [~ 801 test (100.0%) started, 0 in queue, 19 running]
Finished rna_score in 24 seconds [~ 801 test (100.0%) started, 0 in queue, 18 running]
Finished oop_create in 18 seconds [~ 801 test (100.0%) started, 0 in queue, 17 running]
Finished CCD_loop_closure in 11 seconds [~ 801 test (100.0%) started, 0 in queue, 16 running]
Finished make_exemplar in 12 seconds [~ 801 test (100.0%) started, 0 in queue, 15 running]
Finished ld_converter in 19 seconds [~ 801 test (100.0%) started, 0 in queue, 14 running]
Finished InterfaceAnalyzer in 105 seconds [~ 801 test (100.0%) started, 0 in queue, 13 running]
Finished non-canonical_connectivities in 17 seconds [~ 801 test (100.0%) started, 0 in queue, 12 running]
Finished rosetta_scripts_info in 16 seconds [~ 801 test (100.0%) started, 0 in queue, 11 running]
Please install the sqlite3 command line application to correctly run this test.
Finished database_jd2_io in 59 seconds [~ 801 test (100.0%) started, 0 in queue, 10 running]
Please install the sqlite3 command line application to correctly run this test.
Finished database_jd2_compact_io in 58 seconds [~ 801 test (100.0%) started, 0 in queue, 9 running]
Finished seed_ensemble_JD2_JI in 309 seconds [~ 801 test (100.0%) started, 0 in queue, 8 running]
Finished ncaa_fixbb in 197 seconds [~ 801 test (100.0%) started, 0 in queue, 7 running]
Finished rna_farfar_noncanonical_hairpin in 143 seconds [~ 801 test (100.0%) started, 0 in queue, 6 running]
Finished antibody_H3_camelid in 462 seconds [~ 801 test (100.0%) started, 0 in queue, 5 running]
Finished features_database_schema in 54 seconds [~ 801 test (100.0%) started, 0 in queue, 4 running]
Finished pna in 101 seconds [~ 801 test (100.0%) started, 0 in queue, 3 running]
Finished docking_ensemble_prepack in 614 seconds [~ 801 test (100.0%) started, 0 in queue, 2 running]
Finished ligand_dock_ensemble in 2195 seconds [~ 801 test (100.0%) started, 0 in queue, 1 running]
Finished peptiderive in 965 seconds [~ 801 test (100.0%) started, 0 in queue, 0 running]
Skipping comparison/analysis phase because command line option "--skip-comparison" was specified...
Missing new/runtimes.yaml
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},
"bundlegridsampler_z1_offset": {
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},
"bundlereporter_filter": {
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},
"burial_measure_centroid": {
"log": "",
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},
"buried_area_filter": {
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},
"buried_unsat_kinemage": {
"log": "",
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},
"buried_unsat_voids_hbnet_design": {
"log": "",
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},
"buried_unsat_voids_hbnet_design_symm": {
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},
"c-term_conjugation": {
"log": "",
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},
"calculate_sasa": {
"log": "",
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},
"carbohydrates": {
"log": "",
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},
"cart_min_glycans": {
"log": "",
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},
"cartesianddg": {
"log": "",
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},
"case_sensitive_filenames": {
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},
"ccd_ends_graft_mover_rs": {
"log": "",
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},
"central_class_modification": {
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},
"centroid_disulfide_scores": {
"log": "",
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},
"centroid_from_fullatom": {
"log": "",
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},
"cl_complex_rescore": {
"log": "",
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},
"classic_relax_1a19": {
"log": "",
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},
"cleanAlignment": {
"log": "",
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},
"cluster": {
"log": "",
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},
"cluster_alns": {
"log": "",
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},
"cluster_calibur": {
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},
"cluster_filter": {
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},
"cmaes_minimizer": {
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},
"coarse_rna_scoring": {
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},
"code_template_tests_app": {
"log": "",
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},
"code_template_tests_citations": {
"log": "",
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},
"code_template_tests_src": {
"log": "",
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},
"code_template_tests_unit": {
"log": "",
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},
"coenzymes": {
"log": "",
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},
"combine_silent": {
"log": "",
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},
"composition_energy_layers": {
"log": "",
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},
"constel": {
"log": "",
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},
"constraints_metric": {
"log": "",
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},
"contactMap": {
"log": "",
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},
"control_flow_rs": {
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},
"copy_rotamer_mover": {
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},
"count_cycpep_sequences": {
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},
"coupled_moves": {
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},
"crankshaft_flip": {
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},
"create_clash-based_repack_shell": {
"log": "",
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},
"create_sequence_motif": {
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},
"crossaln": {
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},
"crosslinkermover_1_4_bbmb_asymm": {
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},
"crosslinkermover_1_4_bbmb_c2_symmetry": {
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},
"crosslinkermover_1_4_bbmb_s2_symm": {
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},
"crosslinkermover_lanthionine": {
"log": "",
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},
"crosslinkermover_methyllanthionine": {
"log": "",
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},
"crosslinkermover_octahedral": {
"log": "",
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},
"crosslinkermover_octahedral_s2_symm": {
"log": "",
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},
"crosslinkermover_square_planar": {
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},
"crosslinkermover_square_planar_d2_symm": {
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},
"crosslinkermover_square_pyramidal": {
"log": "",
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},
"crosslinkermover_tetrahedral_metal": {
"log": "",
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},
"crosslinkermover_tetrahedral_metal_asp": {
"log": "",
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},
"crosslinkermover_tetrahedral_metal_c2_symmetry": {
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},
"crosslinkermover_tetrahedral_metal_d2_symmetry": {
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},
"crosslinkermover_thioether": {
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},
"crosslinkermover_tma": {
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},
"crosslinkermover_tma_symm": {
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},
"crosslinkermover_trigonal_planar": {
"log": "",
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},
"crosslinkermover_trigonal_planar_c3_symm": {
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},
"crosslinkermover_trigonal_pyramidal": {
"log": "",
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},
"crosslinkermover_trigonal_pyramidal_c3_symm": {
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},
"cs_rosetta_rna": {
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},
"cst_info": {
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},
"cstfile_to_theozyme_pdb": {
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},
"custom_basetype_packer_palette": {
"log": "",
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},
"cyclization": {
"log": "",
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},
"cycpep_design_pipeline": {
"log": "",
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},
"cycpep_rdkit_metric": {
"log": "",
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},
"cycpep_rigid_body_permutation_mover": {
"log": "",
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},
"cycpep_symmetry_filter": {
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},
"d_workflow": {
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},
"database_jd2_compact_io": {
"log": "",
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},
"database_jd2_io": {
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},
"database_md5": {
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},
"database_session_resource": {
"log": "",
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},
"ddG_ensemble": {
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},
"ddG_of_mutation": {
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},
"ddG_scan": {
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},
"ddG_sym": {
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},
"dehydro_aa_patch": {
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},
"density_denovo": {
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},
"density_refine": {
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},
"density_refine_symm": {
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},
"density_tools": {
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},
"design_glycans": {
"log": "",
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},
"design_w_custom_palette-CAAs": {
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},
"design_w_custom_palette-NCAAs": {
"log": "",
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},
"design_w_custom_palette-RNA": {
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},
"dgdp_aio": {
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},
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},
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},
"distances": {
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},
"disulfidize_beta_cys": {
"log": "",
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},
"dna_interface_design": {
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},
"dock_glycans": {
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},
"dock_with_hotspot_place_simultaneously": {
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},
"docking_distance_constraints": {
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},
"docking_ensemble": {
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},
"docking_ensemble_prepack": {
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},
"docking_full_protocol": {
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},
"docking_local_refine": {
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},
"docking_local_refine_min": {
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},
"docking_low_res": {
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},
"docking_prepack": {
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},
"docking_site_constraints": {
"log": "",
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},
"doug_dock_design_min_mod2_cal_cal": {
"log": "",
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},
"drrafter_error_estimation": {
"log": "",
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},
"drrafter_run": {
"log": "",
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},
"drrafter_setup": {
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},
"drrafter_setup_build_missing": {
"log": "",
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},
"drrafter_setup_protein_dock": {
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},
"drrafter_setup_real_test_H": {
"log": "",
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},
"drrafter_setup_real_test_H_no_init": {
"log": "",
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},
"drrafter_setup_ribosome_test": {
"log": "",
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},
"drrafter_setup_simple": {
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},
"duplicate_header_guards": {
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},
"energy_based_clustering_alpha_aa": {
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},
"energy_based_clustering_alpha_aa_bin_analysis": {
"log": "",
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},
"energy_based_clustering_alpha_aa_dihedral": {
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},
"energy_based_clustering_alpha_aa_scorefile": {
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},
"entropy_correction": {
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},
"enumerative_sampling": {
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},
"enzdes": {
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},
"enzscore_filter_dimetal": {
"log": "",
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},
"enzscore_filter_dimetal_sym": {
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},
"enzscore_filter_ligand": {
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},
"enzscore_filter_metal": {
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},
"enzscore_filter_metal_sym": {
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},
"erraser_minimize": {
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},
"esm_model_perplexity": {
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},
"evolution": {
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},
"exclusively_shared_jumps": {
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},
"explicit_membrane": {
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},
"extract_atomtree_diffs": {
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},
"extract_pdbs": {
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},
"farfar_mrna": {
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},
"farnesyl": {
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},
"fast_relax": {
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},
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},
"favor_coupling_tensor": {
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},
"favor_native_residue": {
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},
"features": {
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},
"features_database_schema": {
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},
"features_parallel": {
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},
"features_pdb": {
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},
"features_pdb_mpi": {
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},
"features_postgres": {
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},
"features_scientific_benchmark": {
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},
"fiber_diffraction": {
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},
"fiber_diffraction_fad": {
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},
"fit_helixparams": {
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},
"fit_helixparams_a3b": {
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"fit_helixparams_rms": {
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},
"fix_alignment_to_match_pdb": {
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},
"fixbb": {
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},
"flexpepdock": {
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},
"flexpepdock_abinitio": {
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},
"fold_and_dock": {
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},
"fold_cst_new": {
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},
"fold_from_loops": {
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},
"fragment_picker": {
"log": "",
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},
"fragmentpicker_integration_demo": {
"log": "",
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},
"fuzzy": {
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},
"ga_ligand_dock": {
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},
"ga_ligand_dock_amino_acid": {
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},
"ga_ligand_dock_macrocycle": {
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},
"gen_apo_grids": {
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},
"gen_lig_grids": {
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},
"generate_6Dloopclose": {
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},
"genkic_bin_perturbing": {
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},
"genkic_bin_sampling": {
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},
"genkic_bin_setting": {
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},
"genkic_dihedral_copying": {
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},
"genkic_lowmemory_mode": {
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},
"genkic_rama_filter": {
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},
"genkic_ramaprepro_sampling": {
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},
"genkic_sugars": {
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},
"geometric_solvation": {
"log": "",
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},
"glycan_anomers": {
"log": "",
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},
"glycan_clash_check": {
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},
"glycan_refinment": {
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},
"glycan_relax": {
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},
"glycan_sequon_scanner": {
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},
"glycan_tree_relax": {
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},
"glycomutagenesis": {
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},
"glycopeptidedocking": {
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},
"glycopeptidedocking_diglyco_long": {
"log": "",
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},
"glycosylation": {
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},
"grid_scores_features": {
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},
"hbnet": {
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},
"hbnet_asymm": {
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},
"hbnet_energy": {
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},
"hbnet_energy_rosettascripts_linear": {
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},
"hbnet_energy_symm": {
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},
"hbnet_use_input_rot": {
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},
"hbonds": {
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},
"hbonds_sp2": {
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},
"hbondstoresidue_selector": {
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},
"hbs_design": {
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"header_using_check": {
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},
"helical_bundle": {
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},
"helical_bundle_nonideal": {
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},
"helical_bundle_predict": {
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},
"helical_bundle_predict_psipred": {
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},
"helical_bundle_predict_psipred_with_helix_globals": {
"log": "",
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},
"helical_bundle_predict_sequence": {
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},
"helical_bundle_predict_skipping_residues": {
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"helix_from_sequence": {
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"hierarchical_clustering": {
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"homodimer_fnd_ref2015_memb": {
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"hotspot_graft": {
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},
"hotspot_hashing": {
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},
"hotspot_stub_constraints": {
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},
"hshash_utils": {
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"hts_io": {
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},
"hybridization": {
"log": "",
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},
"hydrate": {
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},
"hydrate_relax": {
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"identify_cdr_clusters": {
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},
"ig_dump": {
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},
"include_cc_check": {
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},
"interaction_graph_summary_metric": {
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},
"interface_energy": {
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},
"inv_kin_lig_loop_design": {
"log": "",
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},
"iphold": {
"log": "",
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},
"jd2test_PDBIO": {
"log": "",
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},
"jd2test_PDBin_mmCIFout": {
"log": "",
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},
"jd2test_PDBin_mmCIFout_extra_data_separate": {
"log": "",
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},
"jd2test_mmCIFIO": {
"log": "",
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},
"jd2test_mmCIFin_PDBout": {
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},
"job_definition_script_vars": {
"log": "",
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},
"jrelax": {
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},
"jscore": {
"log": "",
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},
"kinemage_grid_output": {
"log": "",
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},
"kinematic_looprelax": {
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},
"ld_converter": {
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},
"ligand_database_io": {
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},
"ligand_dock_7cpa": {
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},
"ligand_dock_cholesterol": {
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},
"ligand_dock_ensemble": {
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},
"ligand_dock_grid": {
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},
"ligand_dock_script": {
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},
"ligand_motif_design": {
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},
"ligand_motif_discovery": {
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},
"ligand_motif_identification": {
"log": "",
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},
"ligand_water_docking": {
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},
"longest_continuous_polar_segment_filter": {
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},
"loop_creation": {
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},
"loop_grower_N_term_symm": {
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},
"loop_hash": {
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},
"loop_modeling": {
"log": "",
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},
"make_and_perturb_bundle_multirepeat": {
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},
"make_exemplar": {
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},
"make_mainchain_potential": {
"log": "",
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},
"make_mainchain_potential_symm": {
"log": "",
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},
"make_mainchain_potential_symm_preproline": {
"log": "",
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},
"make_rot_lib": {
"log": "",
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},
"make_symmdef_file": {
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},
"match_1c2t": {
"log": "",
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},
"match_1n9l": {
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},
"match_6cpa": {
"log": "",
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},
"match_xml": {
"log": "",
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},
"measure_lcaa_radii": {
"log": "",
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},
"membrane_abinitio": {
"log": "",
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},
"metal_setup": {
"log": "",
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},
"metalloprotein_abrelax": {
"log": "",
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},
"metalloprotein_broker": {
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},
"metropolis_hastings": {
"log": "",
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},
"mf_fixbb_des": {
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},
"mf_fixbb_sc": {
"log": "",
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},
"mf_flexbb_sc": {
"log": "",
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},
"mg_modeler": {
"log": "",
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},
"mg_modeler_lores": {
"log": "",
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},
"mhc_epitope": {
"log": "",
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},
"mhc_epitope_nmer_preload": {
"log": "",
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},
"min_pack_min": {
"log": "",
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},
"minimize_6Dloopclose": {
"log": "",
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},
"minimize_with_elec_dens": {
"log": "",
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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"state": "passed"
},
"splice_out_H3_shorter": {
"log": "",
"state": "passed"
},
"splice_out_L1_L2_longer": {
"log": "",
"state": "passed"
},
"splice_out_L1_L2_same": {
"log": "",
"state": "passed"
},
"splice_out_L1_L2_shorter": {
"log": "",
"state": "passed"
},
"splice_out_L3_longer": {
"log": "",
"state": "passed"
},
"splice_out_L3_same": {
"log": "",
"state": "passed"
},
"splice_out_L3_shorter": {
"log": "",
"state": "passed"
},
"startfrom_file": {
"log": "",
"state": "passed"
},
"stepwise_lores": {
"log": "",
"state": "passed"
},
"stored_residue_subset": {
"log": "",
"state": "passed"
},
"struc_set_fragment_picker": {
"log": "",
"state": "passed"
},
"super_aln": {
"log": "",
"state": "passed"
},
"supercharge": {
"log": "",
"state": "passed"
},
"surface_docking": {
"log": "",
"state": "passed"
},
"swa_protein_CCDclose": {
"log": "",
"state": "passed"
},
"swa_protein_build_at_Cterminus": {
"log": "",
"state": "passed"
},
"swa_protein_build_at_Nterminus": {
"log": "",
"state": "passed"
},
"swa_protein_cluster": {
"log": "",
"state": "passed"
},
"swa_protein_combine_loops": {
"log": "",
"state": "passed"
},
"swa_protein_loop_sampler": {
"log": "",
"state": "passed"
},
"swa_protein_prepack": {
"log": "",
"state": "passed"
},
"swa_rna_erraser": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_01_append": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_02_prepend": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_03_append_to_silent": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_04_clustering": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_05_prepend_to_5primeterminus": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_06_append_to_3primeterminus": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_07_prepend_dinucleotide": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_08_append_dinucleotide": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_09_sample_virtual_ribose": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_10_prepend_and_ccd_close": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_11_append_and_ccd_close": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_12_helix_addition": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_13_chunk_combination_and_closure": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_14_combine_long_loop_filtering": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_15_combine_long_loop_sampling": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_17_append_floating_base": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_18_rebuild_bulge": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_19_prepend_floating_base_by_jump": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_20_append_floating_base_by_jump": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_22_prepend_and_kic_close": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_23_append_and_kic_close": {
"log": "",
"state": "passed"
},
"swa_rna_loop_clusterer": {
"log": "",
"state": "passed"
},
"swa_rna_loop_sampler": {
"log": "",
"state": "passed"
},
"sweep_respair_energies": {
"log": "",
"state": "passed"
},
"swm_add_rosettascripts": {
"log": "",
"state": "passed"
},
"swm_beta_peptide_loop": {
"log": "",
"state": "passed"
},
"swm_build_full_model": {
"log": "",
"state": "passed"
},
"swm_dna_bridge": {
"log": "",
"state": "passed"
},
"swm_dna_loop": {
"log": "",
"state": "passed"
},
"swm_general_polymer_sampler": {
"log": "",
"state": "passed"
},
"swm_l_rna": {
"log": "",
"state": "passed"
},
"swm_protein_CCDmove": {
"log": "",
"state": "passed"
},
"swm_protein_from_scratch": {
"log": "",
"state": "passed"
},
"swm_protein_loop_sampler": {
"log": "",
"state": "passed"
},
"swm_protein_move_inside_coiledcoil_by_bond": {
"log": "",
"state": "passed"
},
"swm_protein_move_inside_helix_by_bond": {
"log": "",
"state": "passed"
},
"swm_protein_preminimize": {
"log": "",
"state": "passed"
},
"swm_rna_base_pair_constraints": {
"log": "",
"state": "passed"
},
"swm_rna_checkpoint_partition": {
"log": "",
"state": "passed"
},
"swm_rna_fourwayjunction": {
"log": "",
"state": "passed"
},
"swm_rna_loop_design": {
"log": "",
"state": "passed"
},
"swm_rna_move_align_dock": {
"log": "",
"state": "passed"
},
"swm_rna_move_inside_helix_by_bond": {
"log": "",
"state": "passed"
},
"swm_rna_move_inside_helix_by_jump": {
"log": "",
"state": "passed"
},
"swm_rna_move_two_strands": {
"log": "",
"state": "passed"
},
"swm_rna_nickedhelix": {
"log": "",
"state": "passed"
},
"swm_rna_protonated_adenosine": {
"log": "",
"state": "passed"
},
"swm_rna_singleloop": {
"log": "",
"state": "passed"
},
"swm_rna_srl_triplet": {
"log": "",
"state": "passed"
},
"symm_disulfidize": {
"log": "",
"state": "passed"
},
"symm_rotamer_boltzmann": {
"log": "",
"state": "passed"
},
"symmetric_cycpep_align_and_symmetrize": {
"log": "",
"state": "passed"
},
"symmetric_docking": {
"log": "",
"state": "passed"
},
"symmetrical_residue_selector": {
"log": "",
"state": "passed"
},
"symmetry_data_resource": {
"log": "",
"state": "passed"
},
"symmetry_multicomponent": {
"log": "",
"state": "passed"
},
"target_clash": {
"log": "",
"state": "passed"
},
"task_selector": {
"log": "",
"state": "passed"
},
"tcrmodel": {
"log": "",
"state": "passed"
},
"template_features": {
"log": "",
"state": "passed"
},
"tensorflow_connection_test": {
"log": "",
"state": "passed"
},
"tensorflow_manager": {
"log": "",
"state": "passed"
},
"tensorflow_simple_model_load_and_evaluate": {
"log": "",
"state": "passed"
},
"test1_benchmark": {
"log": "",
"state": "passed"
},
"test_computed_saxs_spectrum": {
"log": "",
"state": "passed"
},
"test_d_l_readin": {
"log": "",
"state": "passed"
},
"test_degreaser": {
"log": "",
"state": "passed"
},
"test_energy_method_options": {
"log": "",
"state": "passed"
},
"test_idealize": {
"log": "",
"state": "passed"
},
"test_rosetta_thread_manager_advanced_API": {
"log": "",
"state": "passed"
},
"test_rosetta_thread_manager_basic_API": {
"log": "",
"state": "passed"
},
"thermal_sampler": {
"log": "",
"state": "passed"
},
"thread_local_tracers_check": {
"log": "",
"state": "passed"
},
"threefold_symm_peptide_design": {
"log": "",
"state": "passed"
},
"threefoldlinkermover_tbmb": {
"log": "",
"state": "passed"
},
"threefoldlinkermover_tbmb_symmetric": {
"log": "",
"state": "passed"
},
"tna_base_pairs": {
"log": "",
"state": "passed"
},
"torsion_restricted_sampling": {
"log": "",
"state": "passed"
},
"trRosetta": {
"log": "",
"state": "passed"
},
"trRosettaConstraintGenerator": {
"log": "",
"state": "passed"
},
"trRosettaConstraintGenerator_rosettascripts": {
"log": "",
"state": "passed"
},
"trRosettaProtocolMover": {
"log": "",
"state": "passed"
},
"trRosettaProtocolMover_rosettascripts": {
"log": "",
"state": "passed"
},
"trRosettaProtocolMover_rosettascripts_diskwrite": {
"log": "",
"state": "passed"
},
"trRosettaProtocolMover_rosettascripts_diskwrite_only": {
"log": "",
"state": "passed"
},
"trRosetta_test_predict": {
"log": "",
"state": "passed"
},
"trRosetta_test_predict_ubiquitin": {
"log": "",
"state": "passed"
},
"trRosetta_test_predict_ubiquitin_cst_file_write": {
"log": "",
"state": "passed"
},
"trRosetta_test_predict_ubiquitin_cst_file_write_only": {
"log": "",
"state": "passed"
},
"trRosetta_test_predict_ubiquitin_init_by_bins": {
"log": "",
"state": "passed"
},
"unfolded_state_energy_calc": {
"log": "",
"state": "passed"
},
"validate_database": {
"log": "",
"state": "passed"
},
"vancomycin": {
"log": "",
"state": "passed"
},
"vip": {
"log": "",
"state": "passed"
},
"voids_penalty_energy_design": {
"log": "",
"state": "passed"
},
"voids_penalty_energy_design_symmetry": {
"log": "",
"state": "passed"
},
"write_mol_file": {
"log": "",
"state": "passed"
},
"zinc_heterodimer": {
"log": "",
"state": "passed"
},
"zinc_homodimer_design": {
"log": "",
"state": "passed"
},
"zinc_homodimer_setup": {
"log": "",
"state": "passed"
}
}
}