ERROR: benchmark.py script terminated with non-zero exit-code, execution log:
Loading test from: tests/release.py, suite+test: 'release.rosetta.conda.release', test: 'rosetta.conda.release'
Found test suite description in file: 'tests/release.md'
Running Rosetta conda release test: at working_dir='/Volumes/scratch/w/T/commits-20455.834675.m1.clang.python312.release.rosetta.conda.release.1' with rosetta_dir=/Volumes/scratch/w/rosetta/commits/rosetta, platform={'compiler': 'clang', 'extras': [], 'os': 'm1', 'python': '3.12'}, jobs=4, memory=16GB, hpc_driver=None...
Installing MiniConda, using https://repo.anaconda.com/miniconda/Miniconda3-py38_4.10.1-MacOSX-arm64.sh...
Installing conda...
cd /Volumes/scratch/w/prefix/m1/yoji-1/m1/build-conda && unset __PYVENV_LAUNCHER__ && unset PYTHONHOME && unset PYTHONPATH && bash /Volumes/scratch/w/prefix/m1/yoji-1/m1/build-conda/Miniconda3-py38_4.10.1-MacOSX-arm64.sh -b -p /Volumes/scratch/w/prefix/m1/yoji-1/m1/conda
PREFIX=/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda
Unpacking payload ...
0% 0/33 [00:00<?, ?it/s]
Extracting : pycparser-2.20-py_2.conda: 0% 0/33 [00:00<?, ?it/s]
Extracting : pycparser-2.20-py_2.conda: 3% 1/33 [00:00<00:07, 4.55it/s]
Extracting : pyopenssl-20.0.1-pyhd3eb1b0_1.conda: 3% 1/33 [00:00<00:07, 4.55it/s]
Extracting : requests-2.25.1-pyhd3eb1b0_0.conda: 6% 2/33 [00:00<00:06, 4.55it/s]
Extracting : six-1.16.0-pyhd3eb1b0_0.conda: 9% 3/33 [00:00<00:06, 4.55it/s]
Extracting : tqdm-4.61.2-pyhd3eb1b0_1.conda: 12% 4/33 [00:00<00:06, 4.55it/s]
Extracting : urllib3-1.26.6-pyhd3eb1b0_1.conda: 15% 5/33 [00:00<00:06, 4.55it/s]
Extracting : wheel-0.36.2-pyhd3eb1b0_0.conda: 18% 6/33 [00:00<00:05, 4.55it/s]
Extracting : brotlipy-0.7.0-py38h1230e6a_1002.tar.bz2: 21% 7/33 [00:00<00:05, 4.55it/s]
Extracting : ca-certificates-2021.4.13-hca03da5_1.tar.bz2: 24% 8/33 [00:00<00:05, 4.55it/s]
Extracting : certifi-2020.12.5-py38hca03da5_0.tar.bz2: 27% 9/33 [00:00<00:05, 4.55it/s]
Extracting : cffi-1.14.5-py38h9e348fd_0.tar.bz2: 30% 10/33 [00:00<00:05, 4.55it/s]
Extracting : chardet-4.0.0-py38hca03da5_1003.tar.bz2: 33% 11/33 [00:00<00:04, 4.55it/s]
Extracting : conda-4.10.1-py38hca03da5_1.tar.bz2: 36% 12/33 [00:00<00:04, 4.55it/s]
Extracting : conda-4.10.1-py38hca03da5_1.tar.bz2: 39% 13/33 [00:00<00:01, 15.22it/s]
Extracting : conda-package-handling-1.7.3-py38h1230e6a_1.tar.bz2: 39% 13/33 [00:00<00:01, 15.22it/s]
Extracting : cryptography-3.4.7-py38h9dbe03d_0.tar.bz2: 42% 14/33 [00:00<00:01, 15.22it/s]
Extracting : idna-2.10-pyhd3eb1b0_0.tar.bz2: 45% 15/33 [00:00<00:01, 15.22it/s]
Extracting : libcxx-12.0.0-hf6beb65_0.tar.bz2: 48% 16/33 [00:00<00:01, 15.22it/s]
Extracting : libffi-3.3-hc4ed4cf_2.tar.bz2: 52% 17/33 [00:00<00:01, 15.22it/s]
Extracting : ncurses-6.2-hc4ed4cf_0.tar.bz2: 55% 18/33 [00:00<00:00, 15.22it/s]
...truncated...
[cctools-port]: generating fake signature for '/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/conda-bld/rosetta_1723574501446/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/bin/MakeSegmentFile'
error: /Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/bin/arm64-apple-darwin20.0.0-install_name_tool: changing install names or rpaths can't be redone for: /Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/conda-bld/rosetta_1723574501446/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/bin/hotspot_stub_constraint_test (for architecture arm64) because larger updated load commands do not fit (the program must be relinked, and you may need to use -headerpad or -headerpad_max_install_names)
# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<
Traceback (most recent call last):
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda/exception_handler.py", line 16, in __call__
return func(*args, **kwargs)
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda/cli/main.py", line 84, in main_subshell
exit_code = do_call(args, p)
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda/cli/conda_argparse.py", line 118, in do_call
return args.plugin_subcommand.action(sys.argv[2:])
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda_build/plugin.py", line 17, in build
return execute(args)
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda_build/cli/main_build.py", line 581, in execute
api.build(
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda_build/api.py", line 250, in build
return build_tree(
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda_build/build.py", line 3762, in build_tree
packages_from_this = build(
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda_build/build.py", line 2839, in build
newly_built_packages = bundlers[pkg_type](output_d, m, env, stats)
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda_build/build.py", line 1974, in bundle_conda
files = post_process_files(metadata, initial_files)
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda_build/build.py", line 1782, in post_process_files
post_build(m, new_files, build_python=python)
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda_build/post.py", line 1728, in post_build
post_process_shared_lib(m, f, prefix_files, host_prefix)
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda_build/post.py", line 1604, in post_process_shared_lib
mk_relative_osx(path, host_prefix, m, files=files, rpaths=rpaths)
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda_build/post.py", line 494, in mk_relative_osx
macho.add_rpath(path, rpath_new, build_prefix=prefix, verbose=True)
File "/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/lib/python3.8/site-packages/conda_build/os_utils/macho.py", line 299, in add_rpath
raise RuntimeError("install_name_tool failed with exit status %d" % code)
RuntimeError: install_name_tool failed with exit status 1
`$ /Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/bin/conda build --no-locking --quiet /Volumes/scratch/w/T/commits-20455.834675.m1.clang.python312.release.rosetta.conda.release.1/recipe --output-folder /Volumes/scratch/w/T/commits-20455.834675.m1.clang.python312.release.rosetta.conda.release.1/conda-release`
environment variables:
CIO_TEST=<not set>
CONDA_ALLOW_SOFTLINKS=false
CONDA_DEFAULT_ENV=base
CONDA_EXE=/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/bin/conda
CONDA_PREFIX=/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda
CONDA_PROMPT_MODIFIER=(base)
CONDA_PYTHON_EXE=/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/bin/python
CONDA_ROOT=/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda
CONDA_SHLVL=1
CPATH=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include
CURL_CA_BUNDLE=<not set>
LD_PRELOAD=<not set>
PATH=/Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/bin:/Volumes/scratch/w/pr
efix/m1/yoji-1/m1/conda/condabin:/Users/benchmark/scratch/prefix/b3.ba
ck-end/bin:/Users/benchmark/prefix/local/bin:/Users/benchmark/prefix/m
acports/bin:/usr/local/bin:/usr/sbin:/Library/Frameworks/Python.framew
ork/Versions/3.9/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Use
rs/benchmark/prefix/local/bin:/Users/benchmark/prefix/macports/bin
REQUESTS_CA_BUNDLE=<not set>
SSL_CERT_FILE=<not set>
active environment : base
active env location : /Volumes/scratch/w/prefix/m1/yoji-1/m1/conda
shell level : 1
user config file : /Users/benchmark/.condarc
populated config files :
conda version : 23.5.2
conda-build version : 24.3.0
python version : 3.8.19.final.0
virtual packages : __archspec=1=arm64
__osx=12.7=0
__unix=0=0
base environment : /Volumes/scratch/w/prefix/m1/yoji-1/m1/conda (writable)
conda av data dir : /Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/etc/conda
conda av metadata url : None
channel URLs : https://repo.anaconda.com/pkgs/main/osx-arm64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/osx-arm64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/pkgs
/Users/benchmark/.conda/pkgs
envs directories : /Volumes/scratch/w/prefix/m1/yoji-1/m1/conda/envs
/Users/benchmark/.conda/envs
platform : osx-arm64
user-agent : conda/23.5.2 requests/2.32.3 CPython/3.8.19 Darwin/21.6.0 OSX/12.7 aau/0.4.4 c/. s/. e/.
UID:GID : 2456:20
netrc file : /Users/benchmark/.netrc
offline mode : False
An unexpected error has occurred. Conda has prepared the above report.
If submitted, this report will be used by core maintainers to improve
future releases of conda.
Would you like conda to send this report to the core maintainers? [y/N]:
Timeout reached. No report sent.
Traceback (most recent call last):
File "/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/lib/python3.9/shutil.py", line 806, in move
os.rename(src, real_dst)
FileNotFoundError: [Errno 2] No such file or directory: '/Volumes/scratch/w/T/commits-20455.834675.m1.clang.python312.release.rosetta.conda.release.1/conda-release/osx-arm64/rosetta-2024.24.post.dev+7.commits.7e67a4bb32-0.tar.bz2' -> '/home/benchmark/release/PyRosetta4/conda/devel/osx-arm64/rosetta-2024.24.post.dev+7.commits.7e67a4bb32-0.tar.bz2'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/Volumes/scratch/w/rosetta/commits/rosetta/tests/benchmark/./benchmark.py", line 422, in <module>
if __name__ == "__main__": main(sys.argv)
File "/Volumes/scratch/w/rosetta/commits/rosetta/tests/benchmark/./benchmark.py", line 419, in main
run_test(setup)
File "/Volumes/scratch/w/rosetta/commits/rosetta/tests/benchmark/./benchmark.py", line 335, in run_test
res = test_suite.run(test=test_name, repository_root=repository_root, working_dir=working_dir, platform=dict(setup.platform), config=setup.config, hpc_driver=hpc_driver, verbose=True, debug=setup.debug)
File "tests/release.py", line 1276, in run
elif test =='rosetta.conda.release': return rosetta_conda_release('Release', repository_root, working_dir, platform, config=config, hpc_driver=hpc_driver, verbose=verbose, debug=debug)
File "tests/release.py", line 1256, in rosetta_conda_release
def rosetta_conda_release(*args, **kwargs): return native_libc_rosetta_conda_release(*args, **kwargs)
File "tests/release.py", line 1148, in native_libc_rosetta_conda_release
shutil.move(f'{working_dir_release_path}/{conda_package_dir}/{conda_package}', f'{conda_release_path}/{conda_package_dir}/{conda_package}')
File "/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/lib/python3.9/shutil.py", line 826, in move
copy_function(src, real_dst)
File "/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/lib/python3.9/shutil.py", line 435, in copy2
copyfile(src, dst, follow_symlinks=follow_symlinks)
File "/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9/lib/python3.9/shutil.py", line 264, in copyfile
with open(src, 'rb') as fsrc, open(dst, 'wb') as fdst:
FileNotFoundError: [Errno 2] No such file or directory: '/Volumes/scratch/w/T/commits-20455.834675.m1.clang.python312.release.rosetta.conda.release.1/conda-release/osx-arm64/rosetta-2024.24.post.dev+7.commits.7e67a4bb32-0.tar.bz2'
ERROR: Benchmark back-end script terminates abnormally, marking test state as 'script failed'!