Test: ubuntu-24.04.gcc.python39.PyRosetta.unit 「view this page in B3 βῆτα server」
Branch: rosetta:benchmark 「revision: №5」
Test files: 「file-system-view」 「file-list-view」
Daemon: devel     Started at: 2024-06-09 01:27:26     Run time: 0:58:58      State: failed

Failed sub-tests (click for more details):
C001_Carbohydrates_Demo01 D010_Pose_structure D020_Pose_scoring D030_Fold_tree D040_Movemap D050_Packer_task D060_Folding D070_Refinement D080_Loop_modeling D090_Ala_scan D100_Docking D110_DNA_interface D120_Ligand_interface T000_Imports T005_Bindings T006_Options T007_TracerIO T008_Serialization T009_Exceptions T010_LoadPDB T020_Pose_Bindings T040_Types T100_basic T110_numeric T120_core.RotamerSets T121_core.ResidueSelector T150_PyMOL_Integration T190_Bindings_Utility T200_Scoring T201_Scoring_pre_talaris T220_AtomAtomPairEnergies T250_Constraints T300_PyJobDistributor T400_Refinement T500_Packing T600_Docking T650_LoopsKIC T660_LoopBuilding T700_FoldTree T800_ClassicRelax T850_SubClassing T860_SubClassing_EnergyMethods T870_SubClassing_EnergyMethods2 T880_Other Workshop2test Workshop3test Workshop4test Workshop5test Workshop6test Workshop7test Workshop8test Workshop9_my_shapes Workshop9test

{ "tests": { "C001_Carbohydrates_Demo01": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished C001_Carbohydrates_Demo01 in 0:00:00.117019", "state": "failed" }, "D010_Pose_structure": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished D010_Pose_structure in 0:00:00.118493", "state": "failed" }, "D020_Pose_scoring": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished D020_Pose_scoring in 0:00:00.118173", "state": "failed" }, "D030_Fold_tree": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished D030_Fold_tree in 0:00:00.105026", "state": "failed" }, "D040_Movemap": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished D040_Movemap in 0:00:00.118075", "state": "failed" }, "D050_Packer_task": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished D050_Packer_task in 0:00:00.118336", "state": "failed" }, "D060_Folding": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished D060_Folding in 0:00:00.117509", "state": "failed" }, "D070_Refinement": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished D070_Refinement in 0:00:00.117545", "state": "failed" }, "D080_Loop_modeling": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished D080_Loop_modeling in 0:00:00.118249", "state": "failed" }, "D090_Ala_scan": { "log": "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.39/gcc-13.2.0/python-3.9/minsizerel/build/demo/D090_Ala_scan.py:84: UserWarning: Import of 'rosetta' as a top-level module is deprecated and may be removed in 2018, import via 'pyrosetta.rosetta'.\n from rosetta.protocols.scoring import Interface\nterminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished D090_Ala_scan in 0:00:00.117443", "state": "failed" }, "D100_Docking": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished D100_Docking in 0:00:00.117840", "state": "failed" }, "D110_DNA_interface": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished D110_DNA_interface in 0:00:00.117841", "state": "failed" }, "D120_Ligand_interface": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished D120_Ligand_interface in 0:00:00.117545", "state": "failed" }, "T000_Imports": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T000_Imports in 0:00:00.117017", "state": "failed" }, "T005_Bindings": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T005_Bindings in 0:00:00.115374", "state": "failed" }, "T006_Options": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T006_Options in 0:00:00.115995", "state": "failed" }, "T007_TracerIO": { "log": "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.39/gcc-13.2.0/python-3.9/minsizerel/build/test/T007_TracerIO.py:14: UserWarning: Import of 'rosetta' as a top-level module is deprecated and may be removed in 2018, import via 'pyrosetta.rosetta'.\n import rosetta, pyrosetta\nterminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T007_TracerIO in 0:00:00.081530", "state": "failed" }, "T008_Serialization": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T008_Serialization in 0:00:00.074688", "state": "failed" }, "T009_Exceptions": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T009_Exceptions in 0:00:00.077020", "state": "failed" }, "T010_LoadPDB": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T010_LoadPDB in 0:00:00.076179", "state": "failed" }, "T020_Pose_Bindings": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T020_Pose_Bindings in 0:00:00.077027", "state": "failed" }, "T040_Types": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T040_Types in 0:00:00.073246", "state": "failed" }, "T100_basic": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T100_basic in 0:00:00.074640", "state": "failed" }, "T110_numeric": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T110_numeric in 0:00:00.076154", "state": "failed" }, "T120_core.RotamerSets": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T120_core.RotamerSets in 0:00:00.075925", "state": "failed" }, "T121_core.ResidueSelector": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T121_core.ResidueSelector in 0:00:00.074751", "state": "failed" }, "T150_PyMOL_Integration": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T150_PyMOL_Integration in 0:00:00.074894", "state": "failed" }, "T190_Bindings_Utility": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T190_Bindings_Utility in 0:00:00.073439", "state": "failed" }, "T200_Scoring": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T200_Scoring in 0:00:00.073938", "state": "failed" }, "T201_Scoring_pre_talaris": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T201_Scoring_pre_talaris in 0:00:00.073897", "state": "failed" }, "T220_AtomAtomPairEnergies": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T220_AtomAtomPairEnergies in 0:00:00.072905", "state": "failed" }, "T250_Constraints": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T250_Constraints in 0:00:00.072883", "state": "failed" }, "T300_PyJobDistributor": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T300_PyJobDistributor in 0:00:00.077709", "state": "failed" }, "T400_Refinement": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T400_Refinement in 0:00:00.082567", "state": "failed" }, "T500_Packing": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T500_Packing in 0:00:00.082304", "state": "failed" }, "T600_Docking": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T600_Docking in 0:00:00.081849", "state": "failed" }, "T650_LoopsKIC": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T650_LoopsKIC in 0:00:00.081754", "state": "failed" }, "T660_LoopBuilding": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T660_LoopBuilding in 0:00:00.081396", "state": "failed" }, "T700_FoldTree": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T700_FoldTree in 0:00:00.078881", "state": "failed" }, "T800_ClassicRelax": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T800_ClassicRelax in 0:00:00.080926", "state": "failed" }, "T850_SubClassing": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T850_SubClassing in 0:00:00.080396", "state": "failed" }, "T860_SubClassing_EnergyMethods": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T860_SubClassing_EnergyMethods in 0:00:00.077963", "state": "failed" }, "T870_SubClassing_EnergyMethods2": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T870_SubClassing_EnergyMethods2 in 0:00:00.077314", "state": "failed" }, "T880_Other": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished T880_Other in 0:00:00.079241", "state": "failed" }, "T900_distributed": { "log": "Unsupported python version for pyrosetta.distributed: sys.version_info(major=3, minor=9, micro=14, releaselevel='final', serial=0)\n\nFinished T900_distributed in 0:00:00.030002", "state": "passed" }, "Workshop2test": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished Workshop2test in 0:00:00.078205", "state": "failed" }, "Workshop3test": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished Workshop3test in 0:00:00.075161", "state": "failed" }, "Workshop4test": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished Workshop4test in 0:00:00.077802", "state": "failed" }, "Workshop5test": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished Workshop5test in 0:00:00.071121", "state": "failed" }, "Workshop6test": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished Workshop6test in 0:00:00.071725", "state": "failed" }, "Workshop7test": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished Workshop7test in 0:00:00.072359", "state": "failed" }, "Workshop8test": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished Workshop8test in 0:00:00.071395", "state": "failed" }, "Workshop9_my_shapes": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished Workshop9_my_shapes in 0:00:00.069984", "state": "failed" }, "Workshop9test": { "log": "terminate called after throwing an instance of 'std::out_of_range'\n what(): basic_string::substr: __pos (which is 10) > this->size() (which is 9)\nAborted\n\nFinished Workshop9test in 0:00:00.070297", "state": "failed" } } }