Test: ubuntu-22.04.clang.cxx11thread.serialization.PyRosetta.unit 「view this page in B3 βῆτα server」
Branch: rosetta:commits 「revision: №20433」
Test files: 「file-system-view」 「file-list-view」
Daemon: nobu-3     Started at: 2024-06-05 13:41:17     Run time: 0:48:12      State: failed

Failed sub-tests (click for more details):
C001_Carbohydrates_Demo01 D010_Pose_structure D020_Pose_scoring D030_Fold_tree D040_Movemap D050_Packer_task D060_Folding D070_Refinement D080_Loop_modeling D090_Ala_scan D100_Docking D110_DNA_interface D120_Ligand_interface T000_Imports T005_Bindings T006_Options T007_TracerIO T008_Serialization T009_Exceptions T010_LoadPDB T020_Pose_Bindings T040_Types T100_basic T110_numeric T120_core.RotamerSets T121_core.ResidueSelector T150_PyMOL_Integration T190_Bindings_Utility T200_Scoring T201_Scoring_pre_talaris T220_AtomAtomPairEnergies T250_Constraints T300_PyJobDistributor T400_Refinement T500_Packing T600_Docking T650_LoopsKIC T660_LoopBuilding T700_FoldTree T800_ClassicRelax T850_SubClassing T860_SubClassing_EnergyMethods T870_SubClassing_EnergyMethods2 T880_Other Workshop2test Workshop3test Workshop4test Workshop5test Workshop6test Workshop7test Workshop8test Workshop9_my_shapes Workshop9test

Running: cd /home/benchmark/rosetta/source/src/python/PyRosetta && /home/benchmark/prefix/nobu-3/ubuntu-22.04/python-3.9.gcc/99a1a29fd465f86265a7c5b92d75dbcd/bin/python3.9 build.py -j32 --compiler clang --type MinSizeRel --python-include-dir=/home/benchmark/prefix/nobu-3/ubuntu-22.04/python-3.9.gcc/99a1a29fd465f86265a7c5b92d75dbcd/include/python3.9 --python-lib=/home/benchmark/prefix/nobu-3/ubuntu-22.04/python-3.9.gcc/99a1a29fd465f86265a7c5b92d75dbcd/lib --multi-threaded --serialization Building PyRosetta MinSizeRel... Command line: cd /home/benchmark/rosetta/source/src/python/PyRosetta && /home/benchmark/prefix/nobu-3/ubuntu-22.04/python-3.9.gcc/99a1a29fd465f86265a7c5b92d75dbcd/bin/python3.9 build.py -j32 --compiler clang --type MinSizeRel --python-include-dir=/home/benchmark/prefix/nobu-3/ubuntu-22.04/python-3.9.gcc/99a1a29fd465f86265a7c5b92d75dbcd/include/python3.9 --python-lib=/home/benchmark/prefix/nobu-3/ubuntu-22.04/python-3.9.gcc/99a1a29fd465f86265a7c5b92d75dbcd/lib --multi-threaded --serialization Creating PyRosetta in "MinSizeRel" mode in: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread Getting main repository root... cd /home/benchmark/rosetta/source && git rev-parse --show-toplevel /home/benchmark/rosetta Updating Pybind11 Git submodule... cd /home/benchmark/rosetta/source/.. && git submodule update --init -- source/external/pybind11 Updating Binder Git submodule... cd /home/benchmark/rosetta/source/.. && git submodule update --init -- source/src/python/PyRosetta/binder LLVM:6.0.1 + Binder install is detected at /home/benchmark/rosetta/source/build/prefix/llvm-6.0.1/llvm-6.0.1.Linux-5.4.0-84-generic-x86_64-with-glibc2.35.release, skipping LLVM installation and Binder building procedures... Updating compilation submodules, version, options and residue-type-enum files... cd /home/benchmark/rosetta/source && ./update_submodules.sh PyRosetta bcl zeromq && ./version.py && ./update_options.sh && ./update_ResidueType_enum_files.sh Updating submodules needed for compilation. Running versioning script ... Done. (0.1 seconds) Number of option files updated: 0 Total 4682 options. Finished updating ResidueProperty code -- no changes needed Finished updating VariantType code -- no changes needed Generating bindings... cd /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/source/ && /home/benchmark/rosetta/source/build/prefix/llvm-6.0.1/llvm-6.0.1.Linux-5.4.0-84-generic-x86_64-with-glibc2.35.release/bin/binder --config ./rosetta.config --root-module rosetta --prefix /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/source/ /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/source/all_rosetta_includes.hh -- -std=c++11 -isystem external -isystem external/include -isystem external/boost_submod -isystem external/dbio -isystem external/dbio/sqlite3 -isystem external/libxml2/include -isystem external/rdkit -isystem external/bcl/include -Isrc -Isrc/platform/linux -DPYROSETTA -DNOCRASHREPORT -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DPTR_STD -DNDEBUG -DBCL_NO_OS_SIGNAL_HANDLING -DSERIALIZATION -DMULTI_THREADED -DPYROSETTA_BINDER Process input file /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/source/all_rosetta_includes.hh Generate bindings, pass 1... Generate bindings, pass 2... ...truncated... File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T880_Other.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T860_SubClassing_EnergyMethods in 0:00:00.081198 Finished T870_SubClassing_EnergyMethods2 in 0:00:00.080472 Finished T880_Other in 0:00:00.079515 Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop6test.py", line 6, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T700_FoldTree.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished Workshop6test in 0:00:00.075921 Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T800_ClassicRelax.py", line 15, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T700_FoldTree in 0:00:00.083820 Finished T800_ClassicRelax in 0:00:00.083294 Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop8test.py", line 6, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished Workshop8test in 0:00:00.075377 Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop9_my_shapes.py", line 6, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished Workshop9_my_shapes in 0:00:00.075187 Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop4test.py", line 15, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished Workshop4test in 0:00:00.079559 T900_distributed - passed Following PyRosetta Tests FAILED: C001_Carbohydrates_Demo01 - FAILED D010_Pose_structure - FAILED D020_Pose_scoring - FAILED D030_Fold_tree - FAILED D040_Movemap - FAILED D050_Packer_task - FAILED D060_Folding - FAILED D070_Refinement - FAILED D080_Loop_modeling - FAILED D090_Ala_scan - FAILED D100_Docking - FAILED D110_DNA_interface - FAILED D120_Ligand_interface - FAILED T000_Imports - FAILED T005_Bindings - FAILED T006_Options - FAILED T007_TracerIO - FAILED T008_Serialization - FAILED T009_Exceptions - FAILED T010_LoadPDB - FAILED T020_Pose_Bindings - FAILED T040_Types - FAILED T100_basic - FAILED T110_numeric - FAILED T120_core.RotamerSets - FAILED T121_core.ResidueSelector - FAILED T150_PyMOL_Integration - FAILED T190_Bindings_Utility - FAILED T200_Scoring - FAILED T201_Scoring_pre_talaris - FAILED T220_AtomAtomPairEnergies - FAILED T250_Constraints - FAILED T300_PyJobDistributor - FAILED T400_Refinement - FAILED T500_Packing - FAILED T600_Docking - FAILED T650_LoopsKIC - FAILED T660_LoopBuilding - FAILED T700_FoldTree - FAILED T800_ClassicRelax - FAILED T850_SubClassing - FAILED T860_SubClassing_EnergyMethods - FAILED T870_SubClassing_EnergyMethods2 - FAILED T880_Other - FAILED Workshop2test - FAILED Workshop3test - FAILED Workshop4test - FAILED Workshop5test - FAILED Workshop6test - FAILED Workshop7test - FAILED Workshop8test - FAILED Workshop9_my_shapes - FAILED Workshop9test - FAILED
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/C001_Carbohydrates_Demo01.py", line 7, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished C001_Carbohydrates_Demo01 in 0:00:00.077471
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D010_Pose_structure.py", line 57, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished D010_Pose_structure in 0:00:00.101597
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D020_Pose_scoring.py", line 66, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished D020_Pose_scoring in 0:00:00.095901
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D030_Fold_tree.py", line 65, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished D030_Fold_tree in 0:00:00.098491
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D040_Movemap.py", line 64, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished D040_Movemap in 0:00:00.100783
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D050_Packer_task.py", line 69, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished D050_Packer_task in 0:00:00.094180
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D060_Folding.py", line 95, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished D060_Folding in 0:00:00.079596
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D070_Refinement.py", line 89, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished D070_Refinement in 0:00:00.097829
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D080_Loop_modeling.py", line 122, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished D080_Loop_modeling in 0:00:00.076105
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D090_Ala_scan.py:84: UserWarning: Import of 'rosetta' as a top-level module is deprecated and may be removed in 2018, import via 'pyrosetta.rosetta'. from rosetta.protocols.scoring import Interface Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D090_Ala_scan.py", line 84, in <module> from rosetta.protocols.scoring import Interface File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/rosetta/__init__.py", line 21, in <module> import pyrosetta.rosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished D090_Ala_scan in 0:00:00.102099
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D100_Docking.py", line 90, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished D100_Docking in 0:00:00.097293
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D110_DNA_interface.py", line 73, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished D110_DNA_interface in 0:00:00.064545
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D120_Ligand_interface.py", line 79, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished D120_Ligand_interface in 0:00:00.076602
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T000_Imports.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T000_Imports in 0:00:00.092361
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T005_Bindings.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T005_Bindings in 0:00:00.093111
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T006_Options.py", line 3, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T006_Options in 0:00:00.076622
-------- Test/Demo for capturing Tracers output in PyRosetta -------- /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T007_TracerIO.py:14: UserWarning: Import of 'rosetta' as a top-level module is deprecated and may be removed in 2018, import via 'pyrosetta.rosetta'. import rosetta, pyrosetta Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T007_TracerIO.py", line 14, in <module> import rosetta, pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/rosetta/__init__.py", line 21, in <module> import pyrosetta.rosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T007_TracerIO in 0:00:00.093463
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T008_Serialization.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T008_Serialization in 0:00:00.075490
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T009_Exceptions.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T009_Exceptions in 0:00:00.075402
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T010_LoadPDB.py", line 18, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T010_LoadPDB in 0:00:00.076953
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T020_Pose_Bindings.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T020_Pose_Bindings in 0:00:00.095680
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T040_Types.py", line 17, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T040_Types in 0:00:00.088898
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T100_basic.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T100_basic in 0:00:00.088819
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T110_numeric.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T110_numeric in 0:00:00.088433
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T120_core.RotamerSets.py", line 14, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T120_core.RotamerSets in 0:00:00.069603
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T121_core.ResidueSelector.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T121_core.ResidueSelector in 0:00:00.085635
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T150_PyMOL_Integration.py", line 6, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T150_PyMOL_Integration in 0:00:00.085294
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T190_Bindings_Utility.py", line 10, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T190_Bindings_Utility in 0:00:00.084805
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T200_Scoring.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T200_Scoring in 0:00:00.065261
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T201_Scoring_pre_talaris.py", line 17, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T201_Scoring_pre_talaris in 0:00:00.083514
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T220_AtomAtomPairEnergies.py", line 5, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T220_AtomAtomPairEnergies in 0:00:00.086530
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T250_Constraints.py", line 3, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T250_Constraints in 0:00:00.085067
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T300_PyJobDistributor.py", line 14, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T300_PyJobDistributor in 0:00:00.058705
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T400_Refinement.py", line 15, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T400_Refinement in 0:00:00.058098
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T500_Packing.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T500_Packing in 0:00:00.061246
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T600_Docking.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T600_Docking in 0:00:00.057199
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T650_LoopsKIC.py", line 11, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T650_LoopsKIC in 0:00:00.066674
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T660_LoopBuilding.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T660_LoopBuilding in 0:00:00.078974
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T700_FoldTree.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T700_FoldTree in 0:00:00.083820
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T800_ClassicRelax.py", line 15, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T800_ClassicRelax in 0:00:00.083294
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T850_SubClassing.py", line 16, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T850_SubClassing in 0:00:00.062109
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T860_SubClassing_EnergyMethods.py", line 16, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T860_SubClassing_EnergyMethods in 0:00:00.081198
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T870_SubClassing_EnergyMethods2.py", line 15, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T870_SubClassing_EnergyMethods2 in 0:00:00.080472
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T880_Other.py", line 12, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished T880_Other in 0:00:00.079515
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop2test.py", line 9, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished Workshop2test in 0:00:00.053282
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop3test.py", line 8, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished Workshop3test in 0:00:00.052345
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop4test.py", line 15, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished Workshop4test in 0:00:00.079559
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop5test.py", line 6, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished Workshop5test in 0:00:00.066225
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop6test.py", line 6, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished Workshop6test in 0:00:00.075921
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop7test.py", line 8, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished Workshop7test in 0:00:00.063068
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop8test.py", line 6, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished Workshop8test in 0:00:00.075377
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop9_my_shapes.py", line 6, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished Workshop9_my_shapes in 0:00:00.075187
Traceback (most recent call last): File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop9test.py", line 6, in <module> import pyrosetta File "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py", line 15, in <module> import pyrosetta.rosetta as rosetta ImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_ Finished Workshop9test in 0:00:00.048509
Unsupported python version for pyrosetta.distributed: sys.version_info(major=3, minor=9, micro=14, releaselevel='final', serial=0) Finished T900_distributed in 0:00:00.032962
{ "tests": { "C001_Carbohydrates_Demo01": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/C001_Carbohydrates_Demo01.py\", line 7, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished C001_Carbohydrates_Demo01 in 0:00:00.077471", "state": "failed" }, "D010_Pose_structure": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D010_Pose_structure.py\", line 57, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished D010_Pose_structure in 0:00:00.101597", "state": "failed" }, "D020_Pose_scoring": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D020_Pose_scoring.py\", line 66, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished D020_Pose_scoring in 0:00:00.095901", "state": "failed" }, "D030_Fold_tree": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D030_Fold_tree.py\", line 65, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished D030_Fold_tree in 0:00:00.098491", "state": "failed" }, "D040_Movemap": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D040_Movemap.py\", line 64, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished D040_Movemap in 0:00:00.100783", "state": "failed" }, "D050_Packer_task": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D050_Packer_task.py\", line 69, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished D050_Packer_task in 0:00:00.094180", "state": "failed" }, "D060_Folding": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D060_Folding.py\", line 95, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished D060_Folding in 0:00:00.079596", "state": "failed" }, "D070_Refinement": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D070_Refinement.py\", line 89, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished D070_Refinement in 0:00:00.097829", "state": "failed" }, "D080_Loop_modeling": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D080_Loop_modeling.py\", line 122, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished D080_Loop_modeling in 0:00:00.076105", "state": "failed" }, "D090_Ala_scan": { "log": "/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D090_Ala_scan.py:84: UserWarning: Import of 'rosetta' as a top-level module is deprecated and may be removed in 2018, import via 'pyrosetta.rosetta'.\n from rosetta.protocols.scoring import Interface\nTraceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D090_Ala_scan.py\", line 84, in <module>\n from rosetta.protocols.scoring import Interface\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/rosetta/__init__.py\", line 21, in <module>\n import pyrosetta.rosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished D090_Ala_scan in 0:00:00.102099", "state": "failed" }, "D100_Docking": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D100_Docking.py\", line 90, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished D100_Docking in 0:00:00.097293", "state": "failed" }, "D110_DNA_interface": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D110_DNA_interface.py\", line 73, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished D110_DNA_interface in 0:00:00.064545", "state": "failed" }, "D120_Ligand_interface": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/demo/D120_Ligand_interface.py\", line 79, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished D120_Ligand_interface in 0:00:00.076602", "state": "failed" }, "T000_Imports": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T000_Imports.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T000_Imports in 0:00:00.092361", "state": "failed" }, "T005_Bindings": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T005_Bindings.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T005_Bindings in 0:00:00.093111", "state": "failed" }, "T006_Options": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T006_Options.py\", line 3, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T006_Options in 0:00:00.076622", "state": "failed" }, "T007_TracerIO": { "log": "-------- Test/Demo for capturing Tracers output in PyRosetta --------\n/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T007_TracerIO.py:14: UserWarning: Import of 'rosetta' as a top-level module is deprecated and may be removed in 2018, import via 'pyrosetta.rosetta'.\n import rosetta, pyrosetta\nTraceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T007_TracerIO.py\", line 14, in <module>\n import rosetta, pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/rosetta/__init__.py\", line 21, in <module>\n import pyrosetta.rosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T007_TracerIO in 0:00:00.093463", "state": "failed" }, "T008_Serialization": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T008_Serialization.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T008_Serialization in 0:00:00.075490", "state": "failed" }, "T009_Exceptions": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T009_Exceptions.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T009_Exceptions in 0:00:00.075402", "state": "failed" }, "T010_LoadPDB": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T010_LoadPDB.py\", line 18, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T010_LoadPDB in 0:00:00.076953", "state": "failed" }, "T020_Pose_Bindings": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T020_Pose_Bindings.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T020_Pose_Bindings in 0:00:00.095680", "state": "failed" }, "T040_Types": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T040_Types.py\", line 17, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T040_Types in 0:00:00.088898", "state": "failed" }, "T100_basic": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T100_basic.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T100_basic in 0:00:00.088819", "state": "failed" }, "T110_numeric": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T110_numeric.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T110_numeric in 0:00:00.088433", "state": "failed" }, "T120_core.RotamerSets": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T120_core.RotamerSets.py\", line 14, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T120_core.RotamerSets in 0:00:00.069603", "state": "failed" }, "T121_core.ResidueSelector": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T121_core.ResidueSelector.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T121_core.ResidueSelector in 0:00:00.085635", "state": "failed" }, "T150_PyMOL_Integration": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T150_PyMOL_Integration.py\", line 6, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T150_PyMOL_Integration in 0:00:00.085294", "state": "failed" }, "T190_Bindings_Utility": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T190_Bindings_Utility.py\", line 10, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T190_Bindings_Utility in 0:00:00.084805", "state": "failed" }, "T200_Scoring": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T200_Scoring.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T200_Scoring in 0:00:00.065261", "state": "failed" }, "T201_Scoring_pre_talaris": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T201_Scoring_pre_talaris.py\", line 17, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T201_Scoring_pre_talaris in 0:00:00.083514", "state": "failed" }, "T220_AtomAtomPairEnergies": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T220_AtomAtomPairEnergies.py\", line 5, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T220_AtomAtomPairEnergies in 0:00:00.086530", "state": "failed" }, "T250_Constraints": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T250_Constraints.py\", line 3, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T250_Constraints in 0:00:00.085067", "state": "failed" }, "T300_PyJobDistributor": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T300_PyJobDistributor.py\", line 14, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T300_PyJobDistributor in 0:00:00.058705", "state": "failed" }, "T400_Refinement": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T400_Refinement.py\", line 15, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T400_Refinement in 0:00:00.058098", "state": "failed" }, "T500_Packing": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T500_Packing.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T500_Packing in 0:00:00.061246", "state": "failed" }, "T600_Docking": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T600_Docking.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T600_Docking in 0:00:00.057199", "state": "failed" }, "T650_LoopsKIC": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T650_LoopsKIC.py\", line 11, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T650_LoopsKIC in 0:00:00.066674", "state": "failed" }, "T660_LoopBuilding": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T660_LoopBuilding.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T660_LoopBuilding in 0:00:00.078974", "state": "failed" }, "T700_FoldTree": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T700_FoldTree.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T700_FoldTree in 0:00:00.083820", "state": "failed" }, "T800_ClassicRelax": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T800_ClassicRelax.py\", line 15, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T800_ClassicRelax in 0:00:00.083294", "state": "failed" }, "T850_SubClassing": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T850_SubClassing.py\", line 16, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T850_SubClassing in 0:00:00.062109", "state": "failed" }, "T860_SubClassing_EnergyMethods": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T860_SubClassing_EnergyMethods.py\", line 16, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T860_SubClassing_EnergyMethods in 0:00:00.081198", "state": "failed" }, "T870_SubClassing_EnergyMethods2": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T870_SubClassing_EnergyMethods2.py\", line 15, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T870_SubClassing_EnergyMethods2 in 0:00:00.080472", "state": "failed" }, "T880_Other": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/T880_Other.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished T880_Other in 0:00:00.079515", "state": "failed" }, "T900_distributed": { "log": "Unsupported python version for pyrosetta.distributed: sys.version_info(major=3, minor=9, micro=14, releaselevel='final', serial=0)\n\nFinished T900_distributed in 0:00:00.032962", "state": "passed" }, "Workshop2test": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop2test.py\", line 9, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished Workshop2test in 0:00:00.053282", "state": "failed" }, "Workshop3test": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop3test.py\", line 8, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished Workshop3test in 0:00:00.052345", "state": "failed" }, "Workshop4test": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop4test.py\", line 15, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished Workshop4test in 0:00:00.079559", "state": "failed" }, "Workshop5test": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop5test.py\", line 6, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished Workshop5test in 0:00:00.066225", "state": "failed" }, "Workshop6test": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop6test.py\", line 6, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished Workshop6test in 0:00:00.075921", "state": "failed" }, "Workshop7test": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop7test.py\", line 8, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished Workshop7test in 0:00:00.063068", "state": "failed" }, "Workshop8test": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop8test.py\", line 6, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished Workshop8test in 0:00:00.075377", "state": "failed" }, "Workshop9_my_shapes": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop9_my_shapes.py\", line 6, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished Workshop9_my_shapes in 0:00:00.075187", "state": "failed" }, "Workshop9test": { "log": "Traceback (most recent call last):\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/test/Workshop9test.py\", line 6, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/clang-14.0.0/python-3.9/minsizerel.serialization.thread/build/pyrosetta/rosetta.so: undefined symbol: _ZStltNSt6thread2idES0_\n\nFinished Workshop9test in 0:00:00.048509", "state": "failed" } } }