Compiling: find bin -type l ! -name ".*" -exec rm {} \; ; /Volumes/scratch/b3.w/prefix/mac/hikaru-2/mac/python-3.9.clang/707eb77cedeac3e91130adc5f9ccf882/bin/python3.9 ./scons.py bin mode=debug cxx=clang extras= -j32 && /Volumes/scratch/b3.w/prefix/mac/hikaru-2/mac/python-3.9.clang/707eb77cedeac3e91130adc5f9ccf882/bin/python3.9 ./scons.py cxx=clang mode=debug extras= cat=test -j32
scons: Reading SConscript files ...
Running versioning script ... Done. (0.2 seconds)
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Updating submodules needed for compilation.
Finished updating ResidueProperty code
-- no changes needed
Finished updating VariantType code
-- no changes needed
scons: done reading SConscript files.
scons: Building targets ...
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/denovo_design/task_operations/HighestEnergyRegion.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/devel/denovo_design/task_operations/HighestEnergyRegion.cc
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/denovo_protein_design/SequenceFitnessMover.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/devel/denovo_protein_design/SequenceFitnessMover.cc
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/dna/base_movers.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/devel/dna/base_movers.cc
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/dna/relax_util.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/devel/dna/relax_util.cc
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/domain_insertion/InsertionSiteTestMover.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/devel/domain_insertion/InsertionSiteTestMover.cc
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/fold_from_loops/FoldFromLoopsMover.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/devel/fold_from_loops/FoldFromLoopsMover.cc
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/inv_kin_lig_loop_design/JumpManager.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/devel/inv_kin_lig_loop_design/JumpManager.cc
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/matdes/Symmetrizer.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/devel/matdes/Symmetrizer.cc
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/replica_docking/UnbiasedRigidBodyMover.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/devel/replica_docking/UnbiasedRigidBodyMover.cc
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/residual_dipolar_coupling/RDC_energies.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/devel/residual_dipolar_coupling/RDC_energies.cc
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/scientific_tests/PDBDiagnosticMover.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/devel/scientific_tests/PDBDiagnosticMover.cc
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/znhash/ZnHash.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/devel/znhash/ZnHash.cc
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/znhash/SymmZnMoversAndTaskOps.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/devel/znhash/SymmZnMoversAndTaskOps.cc
In file included from src/devel/denovo_design/task_operations/HighestEnergyRegion.cc:19:
In file included from src/protocols/denovo_design/calculators/CavityCalculator.hh:25:
In file included from src/core/scoring/packstat/compute_sasa.hh:32:
src/numeric/trig.functions.hh:77:108: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
in_sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:98:105: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:118:64: error: no member named 'keep_beyond_sin_cos_range' in namespace 'basic::options::OptionKeys::run'
if (basic::options::option[ basic::options::OptionKeys::run::keep_beyond_sin_cos_range ]) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
In file included from src/devel/denovo_design/task_operations/HighestEnergyRegion.cc:19:
In file included from src/protocols/denovo_design/calculators/CavityCalculator.hh:25:
src/core/scoring/packstat/compute_sasa.hh:172:30: error: no matching function for call to 'sin_cos_range'
PackstatReal p = std::acos( sin_cos_range( diff(3) ) );
^~~~~~~~~~~~~
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/init/register1.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/init/register1.cc
In file included from src/devel/denovo_protein_design/SequenceFitnessMover.cc:34:
In file included from src/core/scoring/packstat/compute_sasa.hh:32:
src/numeric/trig.functions.hh:77:108: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
in_sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:98:105: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:118:64: error: no member named 'keep_beyond_sin_cos_range' in namespace 'basic::options::OptionKeys::run'
if (basic::options::option[ basic::options::OptionKeys::run::keep_beyond_sin_cos_range ]) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
In file included from src/devel/denovo_protein_design/SequenceFitnessMover.cc:34:
src/core/scoring/packstat/compute_sasa.hh:172:30: error: no matching function for call to 'sin_cos_range'
PackstatReal p = std::acos( sin_cos_range( diff(3) ) );
^~~~~~~~~~~~~
In file included from src/devel/dna/base_movers.cc:26:
In file included from src/core/conformation/find_neighbors.hh:29:
In file included from src/numeric/xyzTriple.hh:30:
src/numeric/trig.functions.hh:77:108: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
in_sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:98:105: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:118:64: error: no member named 'keep_beyond_sin_cos_range' in namespace 'basic::options::OptionKeys::run'
if (basic::options::option[ basic::options::OptionKeys::run::keep_beyond_sin_cos_range ]) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
In file included from src/devel/dna/relax_util.cc:39:
In file included from src/numeric/xyz.functions.hh:23:
src/numeric/trig.functions.hh:77:108: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
in_sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:98:105: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:118:64: error: no member named 'keep_beyond_sin_cos_range' in namespace 'basic::options::OptionKeys::run'
if (basic::options::option[ basic::options::OptionKeys::run::keep_beyond_sin_cos_range ]) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
In file included from src/devel/matdes/Symmetrizer.cc:28:
In file included from src/numeric/xyz.functions.hh:23:
src/numeric/trig.functions.hh:77:108: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
in_sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:98:105: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:118:64: error: no member named 'keep_beyond_sin_cos_range' in namespace 'basic::options::OptionKeys::run'
if (basic::options::option[ basic::options::OptionKeys::run::keep_beyond_sin_cos_range ]) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/init/register4.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/init/register4.cc
In file included from src/devel/fold_from_loops/FoldFromLoopsMover.cc:26:
In file included from src/core/scoring/rms_util.tmpl.hh:24:
In file included from src/core/conformation/symmetry/SymmetricConformation.hh:24:
In file included from src/core/conformation/symmetry/SymmetryTransform.hh:28:
In file included from src/numeric/HomogeneousTransform.hh:28:
In file included from src/numeric/xyz.functions.hh:23:
src/numeric/trig.functions.hh:77:108: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
in_sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:98:105: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:118:64: error: no member named 'keep_beyond_sin_cos_range' in namespace 'basic::options::OptionKeys::run'
if (basic::options::option[ basic::options::OptionKeys::run::keep_beyond_sin_cos_range ]) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/antibody_legacy/AntibodyClass.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/antibody_legacy/AntibodyClass.cc
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/antibody_legacy/AntibodyModeler.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/antibody_legacy/AntibodyModeler.cc
In file included from src/devel/inv_kin_lig_loop_design/JumpManager.cc:31:
In file included from src/numeric/xyz.functions.hh:23:
src/numeric/trig.functions.hh:77:108: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
in_sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/antibody_legacy/CDRH3Modeler.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/antibody_legacy/CDRH3Modeler.cc
src/numeric/trig.functions.hh:98:105: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
In file included from src/devel/replica_docking/UnbiasedRigidBodyMover.cc:30:
In file included from src/numeric/random/random.functions.hh:18:
In file included from src/numeric/xyz.functions.hh:23:
src/numeric/trig.functions.hh:77:108: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
in_sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
In file included from src/devel/znhash/ZnHash.cc:16:
In file included from src/devel/znhash/ZnHash.hh:34:
In file included from src/numeric/HomogeneousTransform.hh:28:
In file included from src/numeric/xyz.functions.hh:23:
src/numeric/trig.functions.hh:77:108: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
in_sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:98:105: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
4 errors generated.
src/numeric/trig.functions.hh:118:64: error: no member named 'keep_beyond_sin_cos_range' in namespace 'basic::options::OptionKeys::run'
if (basic::options::option[ basic::options::OptionKeys::run::keep_beyond_sin_cos_range ]) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:98:105: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:118:64: error: no member named 'keep_beyond_sin_cos_range' in namespace 'basic::options::OptionKeys::run'
if (basic::options::option[ basic::options::OptionKeys::run::keep_beyond_sin_cos_range ]) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:118:64: error: no member named 'keep_beyond_sin_cos_range' in namespace 'basic::options::OptionKeys::run'
if (basic::options::option[ basic::options::OptionKeys::run::keep_beyond_sin_cos_range ]) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/antibody_legacy/LHRepulsiveRampLegacy.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/antibody_legacy/LHRepulsiveRampLegacy.cc
In file included from src/devel/znhash/SymmZnMoversAndTaskOps.cc:16:
In file included from src/devel/znhash/SymmZnMoversAndTaskOps.hh:23:
In file included from src/devel/znhash/ZnHash.hh:34:
In file included from src/numeric/HomogeneousTransform.hh:28:
In file included from src/numeric/xyz.functions.hh:23:
src/numeric/trig.functions.hh:77:108: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
in_sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:98:105: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/antibody_legacy/LHSnugFitLegacy.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/antibody_legacy/LHSnugFitLegacy.cc
src/numeric/trig.functions.hh:118:64: error: no member named 'keep_beyond_sin_cos_range' in namespace 'basic::options::OptionKeys::run'
if (basic::options::option[ basic::options::OptionKeys::run::keep_beyond_sin_cos_range ]) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
In file included from src/devel/residual_dipolar_coupling/RDC_energies.cc:34:
In file included from src/numeric/xyz.functions.hh:23:
src/numeric/trig.functions.hh:77:108: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
in_sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:98:105: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/antibody_legacy/GraftMover.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/antibody_legacy/GraftMover.cc
src/numeric/trig.functions.hh:118:64: error: no member named 'keep_beyond_sin_cos_range' in namespace 'basic::options::OptionKeys::run'
if (basic::options::option[ basic::options::OptionKeys::run::keep_beyond_sin_cos_range ]) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
In file included from src/devel/domain_insertion/InsertionSiteTestMover.cc:43:
In file included from src/core/scoring/rms_util.tmpl.hh:24:
In file included from src/core/conformation/symmetry/SymmetricConformation.hh:24:
In file included from src/core/conformation/symmetry/SymmetryTransform.hh:28:
In file included from src/numeric/HomogeneousTransform.hh:28:
In file included from src/numeric/xyz.functions.hh:23:
src/numeric/trig.functions.hh:77:108: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
in_sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:98:105: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/antibody_legacy/Ubiquitin_E2C_Modeler.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/antibody_legacy/Ubiquitin_E2C_Modeler.cc
src/numeric/trig.functions.hh:118:64: error: no member named 'keep_beyond_sin_cos_range' in namespace 'basic::options::OptionKeys::run'
if (basic::options::option[ basic::options::OptionKeys::run::keep_beyond_sin_cos_range ]) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/antibody/Ab_TemplateInfo.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/antibody/Ab_TemplateInfo.cc
In file included from src/devel/dna/relax_util.cc:39:
src/numeric/xyz.functions.hh:306:21: error: no matching function for call to 'sin_cos_range'
angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:324:2: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
angle_radians( p1, p2, p3, angle );
^
src/numeric/xyz.functions.hh:332:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p3) { return angle_radians(p1, p2, p3); }
^
src/numeric/xyz.functions.hh:377:23: error: no matching function for call to 'sin_cos_range'
T angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:386:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p4) { return angle_radians(p1, p2, p3, p4); }
^
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/antibody/AntibodyCDRGrafter.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/antibody/AntibodyCDRGrafter.cc
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/antibody/AntibodyInfo.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/antibody/AntibodyInfo.cc
4 errors generated.
In file included from src/devel/matdes/Symmetrizer.cc:28:
src/numeric/xyz.functions.hh:306:21: error: no matching function for call to 'sin_cos_range'
angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:324:2: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
angle_radians( p1, p2, p3, angle );
^
src/numeric/xyz.functions.hh:332:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p3) { return angle_radians(p1, p2, p3); }
^
src/numeric/xyz.functions.hh:377:23: error: no matching function for call to 'sin_cos_range'
T angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:386:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p4) { return angle_radians(p1, p2, p3, p4); }
^
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/antibody/AntibodyFeatures.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/antibody/AntibodyFeatures.cc
5 errors generated.
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/antibody/AntibodyModelerProtocol.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/antibody/AntibodyModelerProtocol.cc
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/antibody/AntibodyNumberingConverterMover.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/antibody/AntibodyNumberingConverterMover.cc
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/antibody/CDRsMinPackMin.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/antibody/CDRsMinPackMin.cc
In file included from src/devel/replica_docking/UnbiasedRigidBodyMover.cc:30:
In file included from src/numeric/random/random.functions.hh:18:
src/numeric/xyz.functions.hh:306:21: error: no matching function for call to 'sin_cos_range'
angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:324:2: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
angle_radians( p1, p2, p3, angle );
^
src/numeric/xyz.functions.hh:332:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p3) { return angle_radians(p1, p2, p3); }
^
src/numeric/xyz.functions.hh:377:23: error: no matching function for call to 'sin_cos_range'
T angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:386:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p4) { return angle_radians(p1, p2, p3, p4); }
^
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/antibody/GraftCDRLoopsProtocol.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/antibody/GraftCDRLoopsProtocol.cc
src/numeric/xyz.functions.hh:956:22: error: no matching function for call to 'sin_cos_range'
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/antibody/GraftOneCDRLoop.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/antibody/GraftOneCDRLoop.cc
T const cos_theta = sin_cos_range( ( R.trace() - ONE ) / TWO );
^~~~~~~~~~~~~
src/devel/replica_docking/UnbiasedRigidBodyMover.cc:211:5: note: in instantiation of function template specialization 'numeric::rotation_axis<double>' requested here
rotation_axis( diff_R, diff_theta );
^
5 errors generated.
3 errors generated.
scons: *** [build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/denovo_protein_design/SequenceFitnessMover.os] Error 1
clang++ -o build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/antibody/GraftedStemOptimizer.os -c -std=c++11 -isystem external/boost_submod/ -isystem external/ -isystem external/include/ -isystem external/dbio/ -isystem external/libxml2/include -isystem external/rdkit -isystem /usr/local/include -march=core2 -mtune=generic -pipe -Qunused-arguments -DUNUSUAL_ALLOCATOR_DECLARATION -ftemplate-depth-256 -stdlib=libstdc++ -W -Wall -Wextra -pedantic -Werror -Wno-long-long -Wno-strict-aliasing -Winconsistent-missing-override -Wcomma -march=native -mtune=native -stdlib=libc++ -Wno-unused-variable -Wno-implicit-function-declaration -O0 -g -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DBOOST_DISABLE_THREADS -DPTR_STD -Isrc -Iexternal/include -Isrc/platform/macos/64/clang/14.0 -Isrc/platform/macos/64/clang -Isrc/platform/macos/64 -Isrc/platform/macos src/protocols/antibody/GraftedStemOptimizer.cc
scons: *** [build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/denovo_design/task_operations/HighestEnergyRegion.os] Error 1
scons: *** [build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/dna/relax_util.os] Error 1
scons: *** [build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/matdes/Symmetrizer.os] Error 1
In file included from src/devel/residual_dipolar_coupling/RDC_energies.cc:34:
src/numeric/xyz.functions.hh:306:21: error: no matching function for call to 'sin_cos_range'
angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:324:2: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
angle_radians( p1, p2, p3, angle );
^
src/numeric/xyz.functions.hh:332:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p3) { return angle_radians(p1, p2, p3); }
^
src/numeric/xyz.functions.hh:377:23: error: no matching function for call to 'sin_cos_range'
T angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:386:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p4) { return angle_radians(p1, p2, p3, p4); }
^
scons: *** [build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/dna/base_movers.os] Error 1
6 errors generated.
scons: *** [build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/replica_docking/UnbiasedRigidBodyMover.os] Error 1
5 errors generated.
In file included from src/devel/inv_kin_lig_loop_design/JumpManager.cc:31:
src/numeric/xyz.functions.hh:306:21: error: no matching function for call to 'sin_cos_range'
angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:324:2: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
angle_radians( p1, p2, p3, angle );
^
src/numeric/xyz.functions.hh:332:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p3) { return angle_radians(p1, p2, p3); }
^
src/numeric/xyz.functions.hh:377:23: error: no matching function for call to 'sin_cos_range'
T angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:386:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p4) { return angle_radians(p1, p2, p3, p4); }
^
scons: *** [build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/residual_dipolar_coupling/RDC_energies.os] Error 1
In file included from src/devel/fold_from_loops/FoldFromLoopsMover.cc:26:
In file included from src/core/scoring/rms_util.tmpl.hh:24:
In file included from src/core/conformation/symmetry/SymmetricConformation.hh:24:
In file included from src/core/conformation/symmetry/SymmetryTransform.hh:28:
In file included from src/numeric/HomogeneousTransform.hh:28:
src/numeric/xyz.functions.hh:306:21: error: no matching function for call to 'sin_cos_range'
angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:324:2: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
angle_radians( p1, p2, p3, angle );
^
src/numeric/xyz.functions.hh:332:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p3) { return angle_radians(p1, p2, p3); }
^
src/numeric/xyz.functions.hh:377:23: error: no matching function for call to 'sin_cos_range'
T angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:386:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p4) { return angle_radians(p1, p2, p3, p4); }
^
5 errors generated.
scons: *** [build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/inv_kin_lig_loop_design/JumpManager.os] Error 1
5 errors generated.
scons: *** [build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/fold_from_loops/FoldFromLoopsMover.os] Error 1
In file included from src/devel/znhash/ZnHash.cc:16:
In file included from src/devel/znhash/ZnHash.hh:34:
In file included from src/numeric/HomogeneousTransform.hh:28:
src/numeric/xyz.functions.hh:306:21: error: no matching function for call to 'sin_cos_range'
angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:324:2: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
angle_radians( p1, p2, p3, angle );
^
src/numeric/xyz.functions.hh:332:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p3) { return angle_radians(p1, p2, p3); }
^
src/numeric/xyz.functions.hh:377:23: error: no matching function for call to 'sin_cos_range'
T angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:386:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p4) { return angle_radians(p1, p2, p3, p4); }
^
In file included from src/devel/domain_insertion/InsertionSiteTestMover.cc:43:
In file included from src/core/scoring/rms_util.tmpl.hh:24:
In file included from src/core/conformation/symmetry/SymmetricConformation.hh:24:
In file included from src/core/conformation/symmetry/SymmetryTransform.hh:28:
In file included from src/numeric/HomogeneousTransform.hh:28:
src/numeric/xyz.functions.hh:306:21: error: no matching function for call to 'sin_cos_range'
angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:324:2: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
angle_radians( p1, p2, p3, angle );
^
src/numeric/xyz.functions.hh:332:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p3) { return angle_radians(p1, p2, p3); }
^
src/numeric/xyz.functions.hh:377:23: error: no matching function for call to 'sin_cos_range'
T angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:386:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p4) { return angle_radians(p1, p2, p3, p4); }
^
In file included from src/devel/znhash/SymmZnMoversAndTaskOps.cc:16:
In file included from src/devel/znhash/SymmZnMoversAndTaskOps.hh:23:
In file included from src/devel/znhash/ZnHash.hh:34:
In file included from src/numeric/HomogeneousTransform.hh:28:
src/numeric/xyz.functions.hh:306:21: error: no matching function for call to 'sin_cos_range'
angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:324:2: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
angle_radians( p1, p2, p3, angle );
^
src/numeric/xyz.functions.hh:332:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p3) { return angle_radians(p1, p2, p3); }
^
src/numeric/xyz.functions.hh:377:23: error: no matching function for call to 'sin_cos_range'
T angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:386:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p4) { return angle_radians(p1, p2, p3, p4); }
^
In file included from src/protocols/antibody_legacy/AntibodyModeler.cc:41:
In file included from src/core/scoring/rms_util.tmpl.hh:24:
In file included from src/core/conformation/symmetry/SymmetricConformation.hh:24:
In file included from src/core/conformation/symmetry/SymmetryTransform.hh:28:
In file included from src/numeric/HomogeneousTransform.hh:28:
In file included from src/numeric/xyz.functions.hh:23:
src/numeric/trig.functions.hh:77:108: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
in_sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
5 errors generated.
src/numeric/trig.functions.hh:98:105: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
scons: *** [build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/domain_insertion/InsertionSiteTestMover.os] Error 1
src/numeric/trig.functions.hh:118:64: error: no member named 'keep_beyond_sin_cos_range' in namespace 'basic::options::OptionKeys::run'
if (basic::options::option[ basic::options::OptionKeys::run::keep_beyond_sin_cos_range ]) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
5 errors generated.
scons: *** [build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/znhash/ZnHash.os] Error 1
In file included from src/protocols/antibody_legacy/CDRH3Modeler.cc:46:
In file included from src/numeric/xyz.functions.hh:23:
src/numeric/trig.functions.hh:77:108: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
in_sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:98:105: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:118:64: error: no member named 'keep_beyond_sin_cos_range' in namespace 'basic::options::OptionKeys::run'
if (basic::options::option[ basic::options::OptionKeys::run::keep_beyond_sin_cos_range ]) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
5 errors generated.
In file included from src/protocols/antibody_legacy/Ubiquitin_E2C_Modeler.cc:32:
In file included from src/core/scoring/rms_util.tmpl.hh:24:
In file included from src/core/conformation/symmetry/SymmetricConformation.hh:24:
In file included from src/core/conformation/symmetry/SymmetryTransform.hh:28:
In file included from src/numeric/HomogeneousTransform.hh:28:
In file included from src/numeric/xyz.functions.hh:23:
src/numeric/trig.functions.hh:77:108: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
in_sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
src/numeric/trig.functions.hh:98:105: error: no member named 'sin_cos_range_tolerance' in namespace 'basic::options::OptionKeys::run'
sin_cos_range( T const & x, T const & tol = T( basic::options::option[ basic::options::OptionKeys::run::sin_cos_range_tolerance ] ) )
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
scons: *** [build/src/debug/macos/12.6/64/x86/clang/14.0/default/devel/znhash/SymmZnMoversAndTaskOps.os] Error 1
src/numeric/trig.functions.hh:118:64: error: no member named 'keep_beyond_sin_cos_range' in namespace 'basic::options::OptionKeys::run'
if (basic::options::option[ basic::options::OptionKeys::run::keep_beyond_sin_cos_range ]) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
In file included from src/protocols/antibody_legacy/AntibodyModeler.cc:41:
In file included from src/core/scoring/rms_util.tmpl.hh:24:
In file included from src/core/conformation/symmetry/SymmetricConformation.hh:24:
In file included from src/core/conformation/symmetry/SymmetryTransform.hh:28:
In file included from src/numeric/HomogeneousTransform.hh:28:
src/numeric/xyz.functions.hh:306:21: error: no matching function for call to 'sin_cos_range'
angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:324:2: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
angle_radians( p1, p2, p3, angle );
^
src/numeric/xyz.functions.hh:332:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p3) { return angle_radians(p1, p2, p3); }
^
src/numeric/xyz.functions.hh:377:23: error: no matching function for call to 'sin_cos_range'
T angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:386:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p4) { return angle_radians(p1, p2, p3, p4); }
^
In file included from src/protocols/antibody_legacy/CDRH3Modeler.cc:46:
src/numeric/xyz.functions.hh:306:21: error: no matching function for call to 'sin_cos_range'
angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:324:2: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
angle_radians( p1, p2, p3, angle );
^
src/numeric/xyz.functions.hh:332:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p3) { return angle_radians(p1, p2, p3); }
^
src/numeric/xyz.functions.hh:377:23: error: no matching function for call to 'sin_cos_range'
T angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:386:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p4) { return angle_radians(p1, p2, p3, p4); }
^
In file included from src/protocols/antibody_legacy/Ubiquitin_E2C_Modeler.cc:32:
In file included from src/core/scoring/rms_util.tmpl.hh:24:
In file included from src/core/conformation/symmetry/SymmetricConformation.hh:24:
In file included from src/core/conformation/symmetry/SymmetryTransform.hh:28:
In file included from src/numeric/HomogeneousTransform.hh:28:
src/numeric/xyz.functions.hh:306:21: error: no matching function for call to 'sin_cos_range'
angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:324:2: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
angle_radians( p1, p2, p3, angle );
^
src/numeric/xyz.functions.hh:332:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p3) { return angle_radians(p1, p2, p3); }
^
src/numeric/xyz.functions.hh:377:23: error: no matching function for call to 'sin_cos_range'
T angle = std::acos( sin_cos_range( dot(a, b) ) );
^~~~~~~~~~~~~
src/numeric/xyz.functions.hh:386:43: note: in instantiation of function template specialization 'numeric::angle_radians<double>' requested here
xyzVector< double > const & p4) { return angle_radians(p1, p2, p3, p4); }
^
5 errors generated.
5 errors generated.
scons: *** [build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/antibody_legacy/CDRH3Modeler.os] Error 1
scons: *** [build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/antibody_legacy/AntibodyModeler.os] Error 1
5 errors generated.
scons: *** [build/src/debug/macos/12.6/64/x86/clang/14.0/default/protocols/antibody_legacy/Ubiquitin_E2C_Modeler.os] Error 1
scons: building terminated because of errors.