{
"compared_with_test": {
"full_name": "linux.gcc.mpi.serialization.integration.mpi",
"name": "integration.mpi",
"platform": {
"compiler": "gcc",
"extras": [
"mpi",
"serialization"
],
"os": "linux"
},
"platform_as_string": "linux.gcc.mpi.serialization",
"revision": {
"branch": "main",
"revision_id": 62106
},
"state": "failed",
"test_id": 826367
},
"summary": {
"failed": 1,
"failed_tests": [
"replica_docking"
],
"total": 27
},
"tests": {
"backbonegridsampler_nstruct_mode": {
"log": "",
"state": "passed"
},
"database_md5": {
"log": "",
"state": "passed"
},
"features_pdb_mpi": {
"log": "",
"state": "passed"
},
"helical_bundle_predict": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_psipred": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_psipred_with_helix_globals": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_sequence": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_skipping_residues": {
"log": "",
"state": "passed"
},
"mpi_simple_cycpep_predict": {
"log": "",
"state": "passed"
},
"mpi_simple_cycpep_predict_4level": {
"log": "",
"state": "passed"
},
"mpi_simple_cycpep_predict_computing_pnear_to_all": {
"log": "",
"state": "passed"
},
"recon_design_mpi": {
"log": "",
"state": "passed"
},
"replica_docking": {
"log": "Brief Diff:\nFiles /home/benchmark/working_dir/main:62106/replica_docking/log and /home/benchmark/working_dir/commits:20394/replica_docking/log differ\r\nFiles /home/benchmark/working_dir/main:62106/replica_docking/logs/log_2 and /home/benchmark/working_dir/commits:20394/replica_docking/logs/log_2 differ\r\nFiles /home/benchmark/working_dir/main:62106/replica_docking/logs/log_3 and /home/benchmark/working_dir/commits:20394/replica_docking/logs/log_3 differ\r\nFiles /home/benchmark/working_dir/main:62106/replica_docking/.test_got_timeout_kill.log and /home/benchmark/working_dir/commits:20394/replica_docking/.test_got_timeout_kill.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62106/replica_docking/log /home/benchmark/working_dir/commits:20394/replica_docking/log\r\n1a2\r\n> ******** (C) Copyright Rosetta Commons Member Institutions. ***************\r\n4d4\r\n< ******** (C) Copyright Rosetta Commons Member Institutions. ***************\r\n14c14\r\n< mpirun noticed that process rank 3 with PID 1848161 on node nobu-1 exited on signal 9 (Killed).\r\n---\r\n> mpirun noticed that process rank 3 with PID 1957568 on node nobu-1 exited on signal 9 (Killed).\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62106/replica_docking/logs/log_2 /home/benchmark/working_dir/commits:20394/replica_docking/logs/log_2\r\n1c1\r\n< core.init: (2) Rosetta version: 2024.16.post.dev+9.HEAD.baad482 baad48240e60f121d84dc6443bd8745c8d8becdc git@github.com:RosettaCommons/rosetta.git 2024-04-24T11:34:17\r\n---\r\n> core.init: (2) Rosetta version: 2024.16.post.dev+14.HEAD.73569f1 73569f148c7b9a617beb80063773b202facaedc2 git@github.com:RosettaCommons/rosetta.git 2024-04-24T13:33:46\r\n45c45\r\n< core.pack.dunbrack.RotamerLibrary: (2) Dunbrack 2010 library took 0.47 seconds to load from binary\r\n---\r\n> core.pack.dunbrack.RotamerLibrary: (2) Dunbrack 2010 library took 0.55 seconds to load from binary\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62106/replica_docking/logs/log_3 /home/benchmark/working_dir/commits:20394/replica_docking/logs/log_3\r\n1c1\r\n< core.init: (3) Rosetta version: 2024.16.post.dev+9.HEAD.baad482 baad48240e60f121d84dc6443bd8745c8d8becdc git@github.com:RosettaCommons/rosetta.git 2024-04-24T11:34:17\r\n---\r\n> core.init: (3) Rosetta version: 2024.16.post.dev+14.HEAD.73569f1 73569f148c7b9a617beb80063773b202facaedc2 git@github.com:RosettaCommons/rosetta.git 2024-04-24T13:33:46\r\n10c10\r\n< core.chemical.GlobalResidueTypeSet: (3) Total time to initialize 6.7 seconds.\r\n---\r\n> core.chemical.GlobalResidueTypeSet: (3) Total time to initialize 6.79 seconds.\r\n45c45\r\n< core.pack.dunbrack.RotamerLibrary: (3) Dunbrack 2010 library took 0.51 seconds to load from binary\r\n---\r\n> core.pack.dunbrack.RotamerLibrary: (3) Dunbrack 2010 library took 0.47 seconds to load from binary\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62106/replica_docking/.test_got_timeout_kill.log /home/benchmark/working_dir/commits:20394/replica_docking/.test_got_timeout_kill.log\r\n1c1\r\n< *** Test replica_docking exceeded the timeout=3600 and will be killed! [2024-04-24 14:10:16.630851]\r\n---\r\n> *** Test replica_docking exceeded the timeout=3600 and will be killed! [2024-04-24 16:53:48.578709]\r\n\nCompare(...): Marking as \"Script failed\" due to presense of .test_did_not_run.log or .test_got_timeout_kill.log file!\n",
"state": "script failed"
},
"simple_cycpep_predict_beta_thioether_lariat": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_bondangle_bondlength": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_cterm_isopeptide_lariat": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_cterm_isopeptide_lariat_tailless": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_design": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_nterm_isopeptide_lariat": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_nterm_isopeptide_lariat_tailless": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_sidechain_isopeptide": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_sidechain_isopeptide_reverse": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_terminal_disulfide": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_terminal_disulfide_tails": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_terminal_disulfide_tails_2": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_thioether_lariat": {
"log": "",
"state": "passed"
},
"threefold_symm_peptide_design": {
"log": "",
"state": "passed"
}
}
}