Test: ubuntu-20.04.clang.python310.scientific.mp_f19_ddG_of_mutation 「view this page in B3 βῆτα server」
Branch: rosetta:main 「revision: №62103」
Test files: 「file-system-view」 「file-list-view」
Daemon: rosetta-2.hpc-b     Started at: 2024-04-18 15:04:47     Run time: 0:14:12      State: script failed


Test Log

ERROR: benchmark.py script terminated with non-zero exit-code, execution log: Loading test from: tests/scientific/command.py, suite+test: 'scientific.mp_f19_ddG_of_mutation', test: 'mp_f19_ddG_of_mutation' Installing Python-3.10, using https://www.python.org/ftp/python/3.10.10/Python-3.10.10.tgz with extra:('unset __PYVENV_LAUNCHER__ && ', '')... Unpacking /home/benchmark/w/rosetta-2.hpc-b/prefix/ubuntu-20.04/rosetta-2/ubuntu-20.04/python-3.10.gcc/build-python-3.10/openssl-1.1.1b.tar.gz cd /home/benchmark/w/rosetta-2.hpc-b/prefix/ubuntu-20.04/rosetta-2/ubuntu-20.04/python-3.10.gcc/build-python-3.10 && tar -xvzf /home/benchmark/w/rosetta-2.hpc-b/prefix/ubuntu-20.04/rosetta-2/ubuntu-20.04/python-3.10.gcc/build-python-3.10/openssl-1.1.1b.tar.gz openssl-1.1.1b/ openssl-1.1.1b/ACKNOWLEDGEMENTS openssl-1.1.1b/AUTHORS openssl-1.1.1b/CHANGES openssl-1.1.1b/CONTRIBUTING openssl-1.1.1b/Configurations/ openssl-1.1.1b/Configurations/00-base-templates.conf openssl-1.1.1b/Configurations/10-main.conf openssl-1.1.1b/Configurations/15-android.conf openssl-1.1.1b/Configurations/15-ios.conf openssl-1.1.1b/Configurations/50-djgpp.conf openssl-1.1.1b/Configurations/50-haiku.conf openssl-1.1.1b/Configurations/50-masm.conf openssl-1.1.1b/Configurations/50-win-onecore.conf openssl-1.1.1b/Configurations/INTERNALS.Configure openssl-1.1.1b/Configurations/README openssl-1.1.1b/Configurations/README.design openssl-1.1.1b/Configurations/common.tmpl openssl-1.1.1b/Configurations/common0.tmpl openssl-1.1.1b/Configurations/descrip.mms.tmpl openssl-1.1.1b/Configurations/shared-info.pl openssl-1.1.1b/Configurations/unix-Makefile.tmpl openssl-1.1.1b/Configurations/unix-checker.pm openssl-1.1.1b/Configurations/windows-checker.pm openssl-1.1.1b/Configurations/windows-makefile.tmpl openssl-1.1.1b/Configure openssl-1.1.1b/FAQ ...truncated...   copying lib/matplotlib/mpl-data/fonts/afm/phvlo8a.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/afm   copying lib/matplotlib/mpl-data/stylelib/seaborn-whitegrid.mplstyle -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/stylelib   copying lib/matplotlib/backends/web_backend/css/page.css -> build/lib.linux-x86_64-cpython-310/matplotlib/backends/web_backend/css   copying lib/matplotlib/mpl-data/images/zoom_to_rect_large.png -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/mpl-data/images/home_large.png -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/mpl-data/sample_data/msft.csv -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/sample_data   copying lib/matplotlib/mpl-data/images/move_large.gif -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/mpl-data/images/home.svg -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/mpl-data/fonts/afm/pncbi8a.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/afm   copying lib/matplotlib/mpl-data/fonts/afm/pcrbo8a.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/afm   copying lib/matplotlib/mpl-data/images/forward.png -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/mpl-data/stylelib/seaborn-darkgrid.mplstyle -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/stylelib   copying lib/matplotlib/mpl-data/fonts/pdfcorefonts/Helvetica-Bold.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/pdfcorefonts   copying lib/matplotlib/mpl-data/stylelib/Solarize_Light2.mplstyle -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/stylelib   copying lib/matplotlib/mpl-data/fonts/afm/pagk8a.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/afm   copying lib/matplotlib/mpl-data/fonts/afm/pcrr8a.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/afm   copying lib/matplotlib/backends/web_backend/jquery-ui-1.12.1/images/ui-icons_777777_256x240.png -> build/lib.linux-x86_64-cpython-310/matplotlib/backends/web_backend/jquery-ui-1.12.1/images   copying lib/matplotlib/mpl-data/images/zoom_to_rect.gif -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/mpl-data/stylelib/seaborn-dark.mplstyle -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/stylelib   copying lib/matplotlib/mpl-data/fonts/pdfcorefonts/Symbol.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/pdfcorefonts   copying lib/matplotlib/mpl-data/fonts/ttf/STIXSizOneSymReg.ttf -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/ttf   copying lib/matplotlib/mpl-data/stylelib/tableau-colorblind10.mplstyle -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/stylelib   copying lib/matplotlib/backends/web_backend/jquery-ui-1.12.1/index.html -> build/lib.linux-x86_64-cpython-310/matplotlib/backends/web_backend/jquery-ui-1.12.1   copying lib/matplotlib/mpl-data/fonts/ttf/STIXNonUni.ttf -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/ttf   copying lib/matplotlib/mpl-data/images/home.pdf -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/mpl-data/fonts/afm/cmr10.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/afm   copying lib/matplotlib/backends/web_backend/css/boilerplate.css -> build/lib.linux-x86_64-cpython-310/matplotlib/backends/web_backend/css   copying lib/matplotlib/mpl-data/fonts/afm/cmsy10.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/afm   copying lib/matplotlib/backends/web_backend/jquery-ui-1.12.1/jquery-ui.structure.min.css -> build/lib.linux-x86_64-cpython-310/matplotlib/backends/web_backend/jquery-ui-1.12.1   copying lib/matplotlib/mpl-data/fonts/afm/pbkdi8a.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/afm   copying lib/matplotlib/mpl-data/fonts/afm/pagd8a.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/afm   copying lib/matplotlib/mpl-data/stylelib/bmh.mplstyle -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/stylelib   copying lib/matplotlib/mpl-data/images/matplotlib.svg -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/mpl-data/fonts/afm/phvro8a.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/afm   copying lib/matplotlib/mpl-data/images/back.gif -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/mpl-data/images/back.pdf -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/backends/web_backend/nbagg_uat.ipynb -> build/lib.linux-x86_64-cpython-310/matplotlib/backends/web_backend   copying lib/matplotlib/mpl-data/fonts/ttf/LICENSE_DEJAVU -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/ttf   copying lib/matplotlib/mpl-data/fonts/pdfcorefonts/ZapfDingbats.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/pdfcorefonts   copying lib/matplotlib/mpl-data/images/move.gif -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/backends/web_backend/jquery-ui-1.12.1/images/ui-icons_555555_256x240.png -> build/lib.linux-x86_64-cpython-310/matplotlib/backends/web_backend/jquery-ui-1.12.1/images   copying lib/matplotlib/mpl-data/fonts/afm/phvb8an.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/afm   copying lib/matplotlib/mpl-data/images/hand.gif -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   creating build/lib.linux-x86_64-cpython-310/matplotlib/backends/web_backend/jquery-ui-1.12.1/external   creating build/lib.linux-x86_64-cpython-310/matplotlib/backends/web_backend/jquery-ui-1.12.1/external/jquery   copying lib/matplotlib/backends/web_backend/jquery-ui-1.12.1/external/jquery/jquery.js -> build/lib.linux-x86_64-cpython-310/matplotlib/backends/web_backend/jquery-ui-1.12.1/external/jquery   copying lib/matplotlib/mpl-data/fonts/afm/phvbo8a.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/afm   copying lib/matplotlib/mpl-data/fonts/ttf/DejaVuSerifDisplay.ttf -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/ttf   copying lib/matplotlib/mpl-data/fonts/ttf/STIXNonUniBol.ttf -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/ttf   copying lib/matplotlib/mpl-data/fonts/ttf/DejaVuSerif-Bold.ttf -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/ttf   copying lib/matplotlib/mpl-data/images/move.svg -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/mpl-data/sample_data/goog.npz -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/sample_data   copying lib/matplotlib/mpl-data/stylelib/seaborn-white.mplstyle -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/stylelib   creating build/lib.linux-x86_64-cpython-310/matplotlib/backends/web_backend/js   copying lib/matplotlib/backends/web_backend/js/nbagg_mpl.js -> build/lib.linux-x86_64-cpython-310/matplotlib/backends/web_backend/js   copying lib/matplotlib/mpl-data/images/help.svg -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/mpl-data/fonts/afm/phvbo8an.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/afm   copying lib/matplotlib/mpl-data/images/move.png -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/mpl-data/images/forward.gif -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/backends/web_backend/js/mpl_tornado.js -> build/lib.linux-x86_64-cpython-310/matplotlib/backends/web_backend/js   copying lib/matplotlib/mpl-data/images/help.png -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/mpl-data/images/qt4_editor_options_large.png -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/mpl-data/fonts/pdfcorefonts/Courier.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/pdfcorefonts   copying lib/matplotlib/mpl-data/images/filesave.png -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/mpl-data/fonts/afm/putbi8a.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/afm   copying lib/matplotlib/mpl-data/fonts/pdfcorefonts/Times-BoldItalic.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/pdfcorefonts   copying lib/matplotlib/mpl-data/fonts/afm/phvr8an.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/afm   copying lib/matplotlib/mpl-data/fonts/pdfcorefonts/Times-Italic.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/pdfcorefonts   copying lib/matplotlib/mpl-data/fonts/ttf/DejaVuSans.ttf -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/ttf   copying lib/matplotlib/mpl-data/fonts/ttf/STIXSizFourSymReg.ttf -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/ttf   copying lib/matplotlib/mpl-data/fonts/ttf/STIXSizFiveSymReg.ttf -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/ttf   copying lib/matplotlib/mpl-data/fonts/pdfcorefonts/Courier-BoldOblique.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/pdfcorefonts   copying lib/matplotlib/mpl-data/sample_data/embedding_in_wx3.xrc -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/sample_data   copying lib/matplotlib/mpl-data/sample_data/grace_hopper.png -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/sample_data   copying lib/matplotlib/mpl-data/sample_data/membrane.dat -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/sample_data   copying lib/matplotlib/mpl-data/images/matplotlib_128.ppm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/mpl-data/sample_data/grace_hopper.jpg -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/sample_data   copying lib/matplotlib/mpl-data/stylelib/dark_background.mplstyle -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/stylelib   copying lib/matplotlib/mpl-data/sample_data/None_vs_nearest-pdf.png -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/sample_data   copying lib/matplotlib/mpl-data/images/qt4_editor_options.png -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/mpl-data/fonts/afm/pbkli8a.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/afm   copying lib/matplotlib/backends/web_backend/jquery-ui-1.12.1/jquery-ui.min.js -> build/lib.linux-x86_64-cpython-310/matplotlib/backends/web_backend/jquery-ui-1.12.1   copying lib/matplotlib/mpl-data/fonts/pdfcorefonts/Times-Bold.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/pdfcorefonts   copying lib/matplotlib/mpl-data/fonts/pdfcorefonts/Courier-Oblique.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/pdfcorefonts   copying lib/matplotlib/mpl-data/fonts/ttf/cmb10.ttf -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/ttf   copying lib/matplotlib/mpl-data/stylelib/_classic_test_patch.mplstyle -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/stylelib   copying lib/matplotlib/mpl-data/images/filesave_large.gif -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/mpl-data/images/subplots.pdf -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/mpl-data/fonts/afm/putri8a.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/afm   copying lib/matplotlib/mpl-data/fonts/pdfcorefonts/Helvetica-BoldOblique.afm -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/fonts/pdfcorefonts   copying lib/matplotlib/mpl-data/images/filesave.gif -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/backends/web_backend/ipython_inline_figure.html -> build/lib.linux-x86_64-cpython-310/matplotlib/backends/web_backend   copying lib/matplotlib/backends/web_backend/js/mpl.js -> build/lib.linux-x86_64-cpython-310/matplotlib/backends/web_backend/js   copying lib/matplotlib/mpl-data/images/move_large.png -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/images   copying lib/matplotlib/backends/web_backend/jquery-ui-1.12.1/package.json -> build/lib.linux-x86_64-cpython-310/matplotlib/backends/web_backend/jquery-ui-1.12.1   copying lib/matplotlib/backends/web_backend/jquery-ui-1.12.1/jquery-ui.theme.min.css -> build/lib.linux-x86_64-cpython-310/matplotlib/backends/web_backend/jquery-ui-1.12.1   copying lib/matplotlib/mpl-data/sample_data/Minduka_Present_Blue_Pack.png -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/sample_data   copying lib/matplotlib/mpl-data/stylelib/seaborn-notebook.mplstyle -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/stylelib   copying lib/matplotlib/mpl-data/stylelib/seaborn-colorblind.mplstyle -> build/lib.linux-x86_64-cpython-310/matplotlib/mpl-data/stylelib   UPDATING build/lib.linux-x86_64-cpython-310/matplotlib/_version.py   set build/lib.linux-x86_64-cpython-310/matplotlib/_version.py to '3.2.0'   running build_ext   building 'matplotlib.ft2font' extension   creating build/temp.linux-x86_64-cpython-310   creating build/temp.linux-x86_64-cpython-310/src   gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DFREETYPE_BUILD_TYPE=system -DPY_ARRAY_UNIQUE_SYMBOL=MPL_matplotlib_ft2font_ARRAY_API -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -D__STDC_FORMAT_MACROS=1 -Iextern/agg24-svn/include -I/tmp/pip-build-env-ftm7pma0/normal/lib/python3.10/site-packages/numpy/core/include -I/home/benchmark/w/rosetta-2.hpc-b/prefix/ubuntu-20.04/rosetta-2/ubuntu-20.04/python_virtual_environments/python-3.10/d54c00f6ca4ffb5256235d416283ec1d/include -I/home/benchmark/w/rosetta-2.hpc-b/prefix/ubuntu-20.04/rosetta-2/ubuntu-20.04/python-3.10.gcc/69716d1907a38bef273dea4dd5921890/include/python3.10 -c src/checkdep_freetype2.c -o build/temp.linux-x86_64-cpython-310/src/checkdep_freetype2.o   src/checkdep_freetype2.c:3:6: error: #error "FreeType version 2.3 or higher is required. You may set the MPLLOCALFREETYPE environment variable to 1 to let Matplotlib download it."   3 | #error "FreeType version 2.3 or higher is required. \   | ^~~~~   src/checkdep_freetype2.c:10:10: error: #include expects "FILENAME" or <FILENAME>   10 | #include FT_FREETYPE_H   | ^~~~~~~~~~~~~   src/checkdep_freetype2.c:15:9: note: #pragma message: Compiling with FreeType version FREETYPE_MAJOR.FREETYPE_MINOR.FREETYPE_PATCH.   15 | #pragma message("Compiling with FreeType version " \   | ^~~~~~~   src/checkdep_freetype2.c:18:4: error: #error "FreeType version 2.3 or higher is required. You may set the MPLLOCALFREETYPE environment variable to 1 to let Matplotlib download it."   18 | #error "FreeType version 2.3 or higher is required. \   | ^~~~~   error: command '/usr/bin/gcc' failed with exit code 1   [end of output] note: This error originates from a subprocess, and is likely not a problem with pip.  ERROR: Failed building wheel for matplotlib [?25hFailed to build matplotlib ERROR: Could not build wheels for matplotlib, which is required to install pyproject.toml-based projects  ERROR: Benchmark back-end script terminates abnormally, marking test state as 'script failed'!

Sub-Tests Results

All sub-tests

JSON output

{}