Building PyRosetta MinSizeRel...
Command line: cd /home/benchmark/rosetta/source/src/python/PyRosetta && /home/benchmark/prefix/nobu-5/ml/python-3.12.gcc/ecfa3a6b6e6057c10cb0c7825a20544c/bin/python3.12 build.py -j16 --compiler gcc --type MinSizeRel --python-include-dir=/home/benchmark/prefix/nobu-5/ml/python-3.12.gcc/ecfa3a6b6e6057c10cb0c7825a20544c/include/python3.12 --python-lib=/home/benchmark/prefix/nobu-5/ml/python-3.12.gcc/ecfa3a6b6e6057c10cb0c7825a20544c/lib --multi-threaded --serialization --torch --tensorflow
Creating PyRosetta in "MinSizeRel" mode in: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow
Getting main repository root...
cd /home/benchmark/rosetta/source && git rev-parse --show-toplevel
/home/benchmark/rosetta
Updating Pybind11 Git submodule...
cd /home/benchmark/rosetta/source/.. && git submodule update --init -- source/external/pybind11
Updating Binder Git submodule...
cd /home/benchmark/rosetta/source/.. && git submodule update --init -- source/src/python/PyRosetta/binder
LLVM build detected, but config/binder version has changed, perfoming a clean rebuild...
Building tool: binder...
cd /home/benchmark/rosetta/source/build/prefix/llvm-6.0.1/llvm-6.0.1.Linux-5.4.0-84-generic-x86_64-with-glibc2.35.release && cmake -G Ninja -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER=`which gcc` -DCMAKE_CXX_COMPILER=`which g++` -DLLVM_ENABLE_EH=1 -DLLVM_ENABLE_RTTI=ON .. && ninja binder tools/clang/lib/Headers/clang-headers -j16
Updating compilation submodules, version, options and residue-type-enum files...
cd /home/benchmark/rosetta/source && ./update_submodules.sh PyRosetta bcl zeromq && ./version.py && ./update_options.sh && ./update_ResidueType_enum_files.sh
Updating submodules needed for compilation.
Running versioning script ... Done. (0.1 seconds)
Number of option files updated: 0
Total 4680 options.
Finished updating ResidueProperty code
-- no changes needed
Finished updating VariantType code
-- no changes needed
Generating bindings...
cd /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/ && /home/benchmark/rosetta/source/build/prefix/llvm-6.0.1/llvm-6.0.1.Linux-5.4.0-84-generic-x86_64-with-glibc2.35.release/bin/binder --config ./rosetta.config --root-module rosetta --prefix /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/ /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/all_rosetta_includes.hh -- -std=c++14 -isystem external -isystem external/include -isystem external/boost_submod -isystem external/dbio -isystem external/dbio/sqlite3 -isystem external/libxml2/include -isystem external/rdkit -isystem external/bcl/include -Isrc -Isrc/platform/linux -DPYROSETTA -DNOCRASHREPORT -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DPTR_STD -DNDEBUG -DBCL_NO_OS_SIGNAL_HANDLING -DSERIALIZATION -DMULTI_THREADED -DUSE_PYTORCH -DUSE_TENSORFLOW -DUSE_TENSORFLOW_CPU -DPYROSETTA_BINDER
Process input file /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/all_rosetta_includes.hh
Generate bindings, pass 1...
...truncated...
| ^~~~~~~~
/usr/include/c++/11/iomanip:143:5: note: template argument deduction/substitution failed:
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: cannot convert ‘o’ (type ‘const std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’) to type ‘std::_Setbase’
76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } );
| ^
In file included from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/trig.functions.hh:28,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/xyz.functions.hh:23,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/xyzVector.hh:48,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/python/PyRosetta/include/rosetta_binders.hpp:21,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:18:
/usr/include/c++/11/iomanip:178:5: note: candidate: ‘template<class _CharT, class _Traits> std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&, std::_Setfill<_CharT>)’
178 | operator<<(basic_ostream<_CharT, _Traits>& __os, _Setfill<_CharT> __f)
| ^~~~~~~~
/usr/include/c++/11/iomanip:178:5: note: template argument deduction/substitution failed:
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: ‘std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’ is not derived from ‘std::_Setfill<_CharT>’
76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } );
| ^
In file included from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/trig.functions.hh:28,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/xyz.functions.hh:23,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/xyzVector.hh:48,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/python/PyRosetta/include/rosetta_binders.hpp:21,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:18:
/usr/include/c++/11/iomanip:208:5: note: candidate: ‘template<class _CharT, class _Traits> std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&, std::_Setprecision)’
208 | operator<<(basic_ostream<_CharT, _Traits>& __os, _Setprecision __f)
| ^~~~~~~~
/usr/include/c++/11/iomanip:208:5: note: template argument deduction/substitution failed:
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: cannot convert ‘o’ (type ‘const std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’) to type ‘std::_Setprecision’
76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } );
| ^
In file included from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/trig.functions.hh:28,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/xyz.functions.hh:23,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/xyzVector.hh:48,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/python/PyRosetta/include/rosetta_binders.hpp:21,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:18:
/usr/include/c++/11/iomanip:238:5: note: candidate: ‘template<class _CharT, class _Traits> std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&, std::_Setw)’
238 | operator<<(basic_ostream<_CharT, _Traits>& __os, _Setw __f)
| ^~~~~~~~
/usr/include/c++/11/iomanip:238:5: note: template argument deduction/substitution failed:
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: cannot convert ‘o’ (type ‘const std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’) to type ‘std::_Setw’
76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } );
| ^
In file included from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/trig.functions.hh:28,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/xyz.functions.hh:23,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/xyzVector.hh:48,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/python/PyRosetta/include/rosetta_binders.hpp:21,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:18:
/usr/include/c++/11/iomanip:311:5: note: candidate: ‘template<class _CharT, class _Traits, class _MoneyT> std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&, std::_Put_money<_MoneyT>)’
311 | operator<<(basic_ostream<_CharT, _Traits>& __os, _Put_money<_MoneyT> __f)
| ^~~~~~~~
/usr/include/c++/11/iomanip:311:5: note: template argument deduction/substitution failed:
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: ‘std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’ is not derived from ‘std::_Put_money<_MoneyT>’
76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } );
| ^
In file included from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/trig.functions.hh:28,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/xyz.functions.hh:23,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/xyzVector.hh:48,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/python/PyRosetta/include/rosetta_binders.hpp:21,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:18:
/usr/include/c++/11/iomanip:363:5: note: candidate: ‘template<class _CharT, class _Traits> std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&, std::_Put_time<_CharT>)’
363 | operator<<(basic_ostream<_CharT, _Traits>& __os, _Put_time<_CharT> __f)
| ^~~~~~~~
/usr/include/c++/11/iomanip:363:5: note: template argument deduction/substitution failed:
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: ‘std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’ is not derived from ‘std::_Put_time<_CharT>’
76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } );
| ^
In file included from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/python/PyRosetta/include/rosetta_binders.hpp:29,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:18:
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/utility/stream_util.hh:110:16: note: candidate: ‘template<class T1, class T2, typename std::enable_if<(utility::type_traits::has_insertion_operator_s<T>::value && utility::type_traits::has_insertion_operator_s<T2>::value)>::type* <anonymous> > std::ostream& std::operator<<(std::ostream&, const std::map<T1, T2>&)’
110 | std::ostream & operator <<(std::ostream & os, std::map<T1, T2> const & m) {
| ^~~~~~~~
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/utility/stream_util.hh:110:16: note: template argument deduction/substitution failed:
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: ‘const std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’ is not derived from ‘const std::map<T1, T2>’
76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } );
| ^
In file included from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/python/PyRosetta/include/rosetta_binders.hpp:29,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:18:
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/utility/stream_util.hh:129:16: note: candidate: ‘template<class T, typename std::enable_if<utility::type_traits::has_insertion_operator_s<T>::value>::type* <anonymous> > std::ostream& std::operator<<(std::ostream&, const std::__cxx11::list<T>&)’
129 | std::ostream & operator <<(std::ostream & os, std::list<T> const & l) {
| ^~~~~~~~
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/utility/stream_util.hh:129:16: note: template argument deduction/substitution failed:
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: ‘const std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’ is not derived from ‘const std::__cxx11::list<T>’
76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } );
| ^
In file included from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/python/PyRosetta/include/rosetta_binders.hpp:29,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:18:
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/utility/stream_util.hh:147:16: note: candidate: ‘template<class T, typename std::enable_if<utility::type_traits::has_insertion_operator_s<T>::value>::type* <anonymous> > std::ostream& std::operator<<(std::ostream&, const std::set<T>&)’
147 | std::ostream & operator <<(std::ostream & os, std::set<T> const & s) {
| ^~~~~~~~
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/utility/stream_util.hh:147:16: note: template argument deduction/substitution failed:
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: ‘const std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’ is not derived from ‘const std::set<T>’
76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } );
| ^
In file included from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/python/PyRosetta/include/rosetta_binders.hpp:29,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:18:
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/utility/stream_util.hh:96:16: note: candidate: ‘template<class T1, class T2, typename std::enable_if<(utility::type_traits::has_insertion_operator_s<T>::value && utility::type_traits::has_insertion_operator_s<T2>::value)>::type* <anonymous> > std::ostream& std::operator<<(std::ostream&, const std::pair<_T1, _T2>&)’
96 | std::ostream & operator <<(std::ostream & os, std::pair<T1, T2> const & v) {
| ^~~~~~~~
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/utility/stream_util.hh:96:16: note: template argument deduction/substitution failed:
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: ‘const std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’ is not derived from ‘const std::pair<_T1, _T2>’
76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } );
| ^
In file included from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/python/PyRosetta/include/rosetta_binders.hpp:29,
from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:18:
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/utility/stream_util.hh:165:16: note: candidate: ‘template<class T, typename std::enable_if<utility::type_traits::has_insertion_operator_s<T>::value>::type* <anonymous> > std::ostream& std::operator<<(std::ostream&, const std::vector<T>&)’
165 | std::ostream & operator <<( std::ostream & os, std::vector<T> const & v)
| ^~~~~~~~
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/utility/stream_util.hh:165:16: note: template argument deduction/substitution failed:
/home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: ‘const std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’ is not derived from ‘const std::vector<T>’
76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } );
| ^
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