Test: ml.gcc.cxx11thread.serialization.tensorflow.torch.python312.PyRosetta.unit 「view this page in B3 βῆτα server」
Branch: rosetta:benchmark 「revision: №1」
Test files: 「file-system-view」 「file-list-view」
Daemon: devel     Started at: 2024-03-27 19:52:34     Run time: 0:28:50      State: build failed


Building PyRosetta MinSizeRel... Command line: cd /home/benchmark/rosetta/source/src/python/PyRosetta && /home/benchmark/prefix/nobu-5/ml/python-3.12.gcc/ecfa3a6b6e6057c10cb0c7825a20544c/bin/python3.12 build.py -j16 --compiler gcc --type MinSizeRel --python-include-dir=/home/benchmark/prefix/nobu-5/ml/python-3.12.gcc/ecfa3a6b6e6057c10cb0c7825a20544c/include/python3.12 --python-lib=/home/benchmark/prefix/nobu-5/ml/python-3.12.gcc/ecfa3a6b6e6057c10cb0c7825a20544c/lib --multi-threaded --serialization --torch --tensorflow Creating PyRosetta in "MinSizeRel" mode in: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow Getting main repository root... cd /home/benchmark/rosetta/source && git rev-parse --show-toplevel /home/benchmark/rosetta Updating Pybind11 Git submodule... cd /home/benchmark/rosetta/source/.. && git submodule update --init -- source/external/pybind11 Updating Binder Git submodule... cd /home/benchmark/rosetta/source/.. && git submodule update --init -- source/src/python/PyRosetta/binder LLVM build detected, but config/binder version has changed, perfoming a clean rebuild... Building tool: binder... cd /home/benchmark/rosetta/source/build/prefix/llvm-6.0.1/llvm-6.0.1.Linux-5.4.0-84-generic-x86_64-with-glibc2.35.release && cmake -G Ninja -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER=`which gcc` -DCMAKE_CXX_COMPILER=`which g++` -DLLVM_ENABLE_EH=1 -DLLVM_ENABLE_RTTI=ON .. && ninja binder tools/clang/lib/Headers/clang-headers -j16 Updating compilation submodules, version, options and residue-type-enum files... cd /home/benchmark/rosetta/source && ./update_submodules.sh PyRosetta bcl zeromq && ./version.py && ./update_options.sh && ./update_ResidueType_enum_files.sh Updating submodules needed for compilation. Running versioning script ... Done. (0.1 seconds) Number of option files updated: 0 Total 4680 options. Finished updating ResidueProperty code -- no changes needed Finished updating VariantType code -- no changes needed Generating bindings... cd /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/ && /home/benchmark/rosetta/source/build/prefix/llvm-6.0.1/llvm-6.0.1.Linux-5.4.0-84-generic-x86_64-with-glibc2.35.release/bin/binder --config ./rosetta.config --root-module rosetta --prefix /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/ /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/all_rosetta_includes.hh -- -std=c++14 -isystem external -isystem external/include -isystem external/boost_submod -isystem external/dbio -isystem external/dbio/sqlite3 -isystem external/libxml2/include -isystem external/rdkit -isystem external/bcl/include -Isrc -Isrc/platform/linux -DPYROSETTA -DNOCRASHREPORT -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBOOST_MATH_NO_LONG_DOUBLE_MATH_FUNCTIONS -DPTR_STD -DNDEBUG -DBCL_NO_OS_SIGNAL_HANDLING -DSERIALIZATION -DMULTI_THREADED -DUSE_PYTORCH -DUSE_TENSORFLOW -DUSE_TENSORFLOW_CPU -DPYROSETTA_BINDER Process input file /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/all_rosetta_includes.hh Generate bindings, pass 1... ...truncated... | ^~~~~~~~ /usr/include/c++/11/iomanip:143:5: note: template argument deduction/substitution failed: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: cannot convert ‘o’ (type ‘const std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’) to type ‘std::_Setbase’ 76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } ); | ^ In file included from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/trig.functions.hh:28, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/xyz.functions.hh:23, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/xyzVector.hh:48, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/python/PyRosetta/include/rosetta_binders.hpp:21, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:18: /usr/include/c++/11/iomanip:178:5: note: candidate: ‘template<class _CharT, class _Traits> std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&, std::_Setfill<_CharT>)’ 178 | operator<<(basic_ostream<_CharT, _Traits>& __os, _Setfill<_CharT> __f) | ^~~~~~~~ /usr/include/c++/11/iomanip:178:5: note: template argument deduction/substitution failed: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: ‘std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’ is not derived from ‘std::_Setfill<_CharT>’ 76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } ); | ^ In file included from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/trig.functions.hh:28, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/xyz.functions.hh:23, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/xyzVector.hh:48, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/python/PyRosetta/include/rosetta_binders.hpp:21, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:18: /usr/include/c++/11/iomanip:208:5: note: candidate: ‘template<class _CharT, class _Traits> std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&, std::_Setprecision)’ 208 | operator<<(basic_ostream<_CharT, _Traits>& __os, _Setprecision __f) | ^~~~~~~~ /usr/include/c++/11/iomanip:208:5: note: template argument deduction/substitution failed: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: cannot convert ‘o’ (type ‘const std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’) to type ‘std::_Setprecision’ 76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } ); | ^ In file included from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/trig.functions.hh:28, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/xyz.functions.hh:23, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/xyzVector.hh:48, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/python/PyRosetta/include/rosetta_binders.hpp:21, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:18: /usr/include/c++/11/iomanip:238:5: note: candidate: ‘template<class _CharT, class _Traits> std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&, std::_Setw)’ 238 | operator<<(basic_ostream<_CharT, _Traits>& __os, _Setw __f) | ^~~~~~~~ /usr/include/c++/11/iomanip:238:5: note: template argument deduction/substitution failed: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: cannot convert ‘o’ (type ‘const std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’) to type ‘std::_Setw’ 76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } ); | ^ In file included from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/trig.functions.hh:28, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/xyz.functions.hh:23, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/xyzVector.hh:48, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/python/PyRosetta/include/rosetta_binders.hpp:21, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:18: /usr/include/c++/11/iomanip:311:5: note: candidate: ‘template<class _CharT, class _Traits, class _MoneyT> std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&, std::_Put_money<_MoneyT>)’ 311 | operator<<(basic_ostream<_CharT, _Traits>& __os, _Put_money<_MoneyT> __f) | ^~~~~~~~ /usr/include/c++/11/iomanip:311:5: note: template argument deduction/substitution failed: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: ‘std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’ is not derived from ‘std::_Put_money<_MoneyT>’ 76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } ); | ^ In file included from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/trig.functions.hh:28, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/xyz.functions.hh:23, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/numeric/xyzVector.hh:48, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/python/PyRosetta/include/rosetta_binders.hpp:21, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:18: /usr/include/c++/11/iomanip:363:5: note: candidate: ‘template<class _CharT, class _Traits> std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&, std::_Put_time<_CharT>)’ 363 | operator<<(basic_ostream<_CharT, _Traits>& __os, _Put_time<_CharT> __f) | ^~~~~~~~ /usr/include/c++/11/iomanip:363:5: note: template argument deduction/substitution failed: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: ‘std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’ is not derived from ‘std::_Put_time<_CharT>’ 76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } ); | ^ In file included from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/python/PyRosetta/include/rosetta_binders.hpp:29, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:18: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/utility/stream_util.hh:110:16: note: candidate: ‘template<class T1, class T2, typename std::enable_if<(utility::type_traits::has_insertion_operator_s<T>::value && utility::type_traits::has_insertion_operator_s<T2>::value)>::type* <anonymous> > std::ostream& std::operator<<(std::ostream&, const std::map<T1, T2>&)’ 110 | std::ostream & operator <<(std::ostream & os, std::map<T1, T2> const & m) { | ^~~~~~~~ /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/utility/stream_util.hh:110:16: note: template argument deduction/substitution failed: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: ‘const std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’ is not derived from ‘const std::map<T1, T2>’ 76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } ); | ^ In file included from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/python/PyRosetta/include/rosetta_binders.hpp:29, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:18: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/utility/stream_util.hh:129:16: note: candidate: ‘template<class T, typename std::enable_if<utility::type_traits::has_insertion_operator_s<T>::value>::type* <anonymous> > std::ostream& std::operator<<(std::ostream&, const std::__cxx11::list<T>&)’ 129 | std::ostream & operator <<(std::ostream & os, std::list<T> const & l) { | ^~~~~~~~ /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/utility/stream_util.hh:129:16: note: template argument deduction/substitution failed: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: ‘const std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’ is not derived from ‘const std::__cxx11::list<T>’ 76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } ); | ^ In file included from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/python/PyRosetta/include/rosetta_binders.hpp:29, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:18: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/utility/stream_util.hh:147:16: note: candidate: ‘template<class T, typename std::enable_if<utility::type_traits::has_insertion_operator_s<T>::value>::type* <anonymous> > std::ostream& std::operator<<(std::ostream&, const std::set<T>&)’ 147 | std::ostream & operator <<(std::ostream & os, std::set<T> const & s) { | ^~~~~~~~ /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/utility/stream_util.hh:147:16: note: template argument deduction/substitution failed: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: ‘const std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’ is not derived from ‘const std::set<T>’ 76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } ); | ^ In file included from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/python/PyRosetta/include/rosetta_binders.hpp:29, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:18: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/utility/stream_util.hh:96:16: note: candidate: ‘template<class T1, class T2, typename std::enable_if<(utility::type_traits::has_insertion_operator_s<T>::value && utility::type_traits::has_insertion_operator_s<T2>::value)>::type* <anonymous> > std::ostream& std::operator<<(std::ostream&, const std::pair<_T1, _T2>&)’ 96 | std::ostream & operator <<(std::ostream & os, std::pair<T1, T2> const & v) { | ^~~~~~~~ /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/utility/stream_util.hh:96:16: note: template argument deduction/substitution failed: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: ‘const std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’ is not derived from ‘const std::pair<_T1, _T2>’ 76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } ); | ^ In file included from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/python/PyRosetta/include/rosetta_binders.hpp:29, from /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:18: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/utility/stream_util.hh:165:16: note: candidate: ‘template<class T, typename std::enable_if<utility::type_traits::has_insertion_operator_s<T>::value>::type* <anonymous> > std::ostream& std::operator<<(std::ostream&, const std::vector<T>&)’ 165 | std::ostream & operator <<( std::ostream & os, std::vector<T> const & v) | ^~~~~~~~ /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/src/utility/stream_util.hh:165:16: note: template argument deduction/substitution failed: /home/benchmark/rosetta/source/build/PyRosetta/Linux-5.4.0-84-generic-x86_64-with-glibc2.35/gcc-11.4.0/python-3.12/minsizerel.serialization.thread.torch.tensorflow/source/std/stl_multimap.cpp:76:271: note: ‘const std::multimap<double, std::pair<long unsigned int, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > > >’ is not derived from ‘const std::vector<T>’ 76 | cl.def("__str__", [](std::multimap<double,std::pair<unsigned long, std::pair<std::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::shared_ptr<protocols::hotspot_hashing::HotspotStub> > >> const &o) -> std::string { std::ostringstream s; s << o; return s.str(); } ); | ^ [5554/8715] Building CXX object CMakeFiles/rosetta.dir/ObjexxFCL/Fstring_3.cpp.o [5555/8715] Building CXX object CMakeFiles/rosetta.dir/ObjexxFCL/FArray5D.cpp.o [5556/8715] Building CXX object CMakeFiles/rosetta.dir/ObjexxFCL/FArray5D_1.cpp.o [5557/8715] Building CXX object CMakeFiles/rosetta.dir/ObjexxFCL/FArray5_1.cpp.o [5558/8715] Building CXX object CMakeFiles/rosetta.dir/ObjexxFCL/ObserverMediator.cpp.o [5559/8715] Building CXX object CMakeFiles/rosetta.dir/ObjexxFCL/ObserverGraph.cpp.o [5560/8715] Building CXX object CMakeFiles/rosetta.dir/ObjexxFCL/string_functions_2.cpp.o [5561/8715] Building CXX object CMakeFiles/rosetta.dir/std/stl_set.cpp.o [5562/8715] Building CXX object CMakeFiles/rosetta.dir/std/stl_set_2.cpp.o [5563/8715] Building CXX object CMakeFiles/rosetta.dir/std/stl_set_1.cpp.o [5564/8715] Building CXX object CMakeFiles/rosetta.dir/std/stl_map_4.cpp.o [5565/8715] Building CXX object CMakeFiles/rosetta.dir/std/stl_map_1.cpp.o [5566/8715] Building CXX object CMakeFiles/rosetta.dir/std/stl_map.cpp.o [5567/8715] Building CXX object CMakeFiles/rosetta.dir/std/stl_map_2.cpp.o [5568/8715] Building CXX object CMakeFiles/rosetta.dir/std/stl_map_3.cpp.o ninja: build stopped: subcommand failed.
{}