{
"compared_with_test": {
"full_name": "linux.clang.integration.release_debug_no_symbols",
"name": "integration.release_debug_no_symbols",
"platform": {
"compiler": "clang",
"extras": [],
"os": "linux"
},
"platform_as_string": "linux.clang",
"revision": {
"branch": "master",
"revision_id": 62063
},
"state": "failed",
"test_id": 814608
},
"summary": {
"failed": 5,
"failed_tests": [
"cmaes_minimizer",
"output_schema",
"ga_ligand_dock_macrocycle",
"features",
"energy_based_clustering_alpha_aa_scorefile"
],
"total": 794
},
"tests": {
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"log": "",
"state": "passed"
},
"AlignPDBInfoToSequences": {
"log": "",
"state": "passed"
},
"AlterSpecDisruption": {
"log": "",
"state": "passed"
},
"AnchorFinder": {
"log": "",
"state": "passed"
},
"AnchoredDesign": {
"log": "",
"state": "passed"
},
"AnchoredPDBCreator": {
"log": "",
"state": "passed"
},
"BFactorSelector": {
"log": "",
"state": "passed"
},
"BuildPeptide": {
"log": "",
"state": "passed"
},
"CCD_loop_closure": {
"log": "",
"state": "passed"
},
"CCS_PARCS": {
"log": "",
"state": "passed"
},
"ConsensusLoopDesign": {
"log": "",
"state": "passed"
},
"ContactMolecularSurface": {
"log": "",
"state": "passed"
},
"DARC_electrostatics": {
"log": "",
"state": "passed"
},
"DARC_make_ray_files": {
"log": "",
"state": "passed"
},
"DARC_sampling_on_the_fly": {
"log": "",
"state": "passed"
},
"DARC_shapeonly": {
"log": "",
"state": "passed"
},
"DNA_methylation": {
"log": "",
"state": "passed"
},
"DumpTrajectoryEnergy": {
"log": "",
"state": "passed"
},
"DumpTrajectoryEnergy_packing": {
"log": "",
"state": "passed"
},
"Enzrevert_xml": {
"log": "",
"state": "passed"
},
"FavorSequenceProfileMover": {
"log": "",
"state": "passed"
},
"FilterReportAsPoseExtraScoresMover": {
"log": "",
"state": "passed"
},
"FlipChirality": {
"log": "",
"state": "passed"
},
"FloppyTail": {
"log": "",
"state": "passed"
},
"HDXEnergy": {
"log": "",
"state": "passed"
},
"HOW_TO_MAKE_TESTS": {
"log": "",
"state": "passed"
},
"HelixBendFilter": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer_allscores": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer_bothpack": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer_ligand": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer_metrics": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer_prepack": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer_resfile": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer_tracer": {
"log": "",
"state": "passed"
},
"InterfaceDdG": {
"log": "",
"state": "passed"
},
"KIC_refine": {
"log": "",
"state": "passed"
},
"KIC_vicinity": {
"log": "",
"state": "passed"
},
"KIC_with_fragments": {
"log": "",
"state": "passed"
},
"LayerDesign": {
"log": "",
"state": "passed"
},
"LayerDesign_symm": {
"log": "",
"state": "passed"
},
"LayerSelector": {
"log": "",
"state": "passed"
},
"LoopAnalyzer": {
"log": "",
"state": "passed"
},
"LoopLengthChange": {
"log": "",
"state": "passed"
},
"ModifyVariantTypeMover": {
"log": "",
"state": "passed"
},
"MutateResidue_selector": {
"log": "",
"state": "passed"
},
"N-terminal_acetylation": {
"log": "",
"state": "passed"
},
"OversaturatedHbondAcceptorFilter": {
"log": "",
"state": "passed"
},
"PDB_diagnostic": {
"log": "",
"state": "passed"
},
"PTMPrediction": {
"log": "",
"state": "passed"
},
"PeptideCyclizeMover": {
"log": "",
"state": "passed"
},
"PeptideStubMover_prependRepeat": {
"log": "",
"state": "passed"
},
"PolarDesign2019": {
"log": "",
"state": "passed"
},
"ProQ": {
"log": "",
"state": "passed"
},
"RBOut": {
"log": "",
"state": "passed"
},
"ReadResfile_with_selector": {
"log": "",
"state": "passed"
},
"RescorePDDF": {
"log": "",
"state": "passed"
},
"RescoreSAXS": {
"log": "",
"state": "passed"
},
"ResidueDisorder": {
"log": "",
"state": "passed"
},
"RunSimpleMetric_b_factor_test": {
"log": "",
"state": "passed"
},
"SID_ERMS_prediction": {
"log": "",
"state": "passed"
},
"SID_rescore": {
"log": "",
"state": "passed"
},
"SSElementSelector": {
"log": "",
"state": "passed"
},
"SecondaryStructureFilter": {
"log": "",
"state": "passed"
},
"SnugDock": {
"log": "",
"state": "passed"
},
"StrandCurvatureByLevels": {
"log": "",
"state": "passed"
},
"StrandHelixGeometryFilter": {
"log": "",
"state": "passed"
},
"ThreadingInputter": {
"log": "",
"state": "passed"
},
"TryDisulfPermutations": {
"log": "",
"state": "passed"
},
"UBQ_E2_thioester": {
"log": "",
"state": "passed"
},
"UBQ_E2_thioester_extra_bodies": {
"log": "",
"state": "passed"
},
"UBQ_E2_thioester_two_ubiquitins": {
"log": "",
"state": "passed"
},
"UBQ_Gp_CYD-CYD": {
"log": "",
"state": "passed"
},
"UBQ_Gp_LYX-Cterm": {
"log": "",
"state": "passed"
},
"UnsatSelector": {
"log": "",
"state": "passed"
},
"Werror_check": {
"log": "",
"state": "passed"
},
"abinitio": {
"log": "",
"state": "passed"
},
"abinitio_with_trRosetta": {
"log": "",
"state": "passed"
},
"add_constraints_to_current_conformation": {
"log": "",
"state": "passed"
},
"add_helix_sequence_constraints": {
"log": "",
"state": "passed"
},
"add_helix_sequence_constraints_advanced_setup": {
"log": "",
"state": "passed"
},
"add_job_pair_data": {
"log": "",
"state": "passed"
},
"angle_recovery_stats": {
"log": "",
"state": "passed"
},
"antibody_H3": {
"log": "",
"state": "passed"
},
"antibody_H3_camelid": {
"log": "",
"state": "passed"
},
"antibody_cc": {
"log": "",
"state": "passed"
},
"antibody_designer": {
"log": "",
"state": "passed"
},
"antibody_designer_camelid": {
"log": "",
"state": "passed"
},
"antibody_designer_xml": {
"log": "",
"state": "passed"
},
"antibody_graft": {
"log": "",
"state": "passed"
},
"antibody_numbering_converter": {
"log": "",
"state": "passed"
},
"app_exception_handling": {
"log": "",
"state": "passed"
},
"assemble_domains_jd2": {
"log": "",
"state": "passed"
},
"auto-drrafter_final_results": {
"log": "",
"state": "passed"
},
"auto-drrafter_setup_run_R1": {
"log": "",
"state": "passed"
},
"auto-drrafter_setup_run_R2": {
"log": "",
"state": "passed"
},
"auto-drrafter_setup_run_R3": {
"log": "",
"state": "passed"
},
"autoNOE_rosetta": {
"log": "",
"state": "passed"
},
"autosetup_metals_centroid": {
"log": "",
"state": "passed"
},
"backbonegridsampler": {
"log": "",
"state": "passed"
},
"backbonegridsampler_multiresidue": {
"log": "",
"state": "passed"
},
"backbonegridsampler_nstruct_mode": {
"log": "",
"state": "passed"
},
"backrub": {
"log": "",
"state": "passed"
},
"backrub_interface_ddG": {
"log": "",
"state": "passed"
},
"backrub_pilot": {
"log": "",
"state": "passed"
},
"balancedKIC": {
"log": "",
"state": "passed"
},
"basic_gcn_tensorflow_test": {
"log": "",
"state": "passed"
},
"batch_relax": {
"log": "",
"state": "passed"
},
"beta_strand_homodimer": {
"log": "",
"state": "passed"
},
"bin_initialization": {
"log": "",
"state": "passed"
},
"bin_perturbation": {
"log": "",
"state": "passed"
},
"binselector": {
"log": "",
"state": "passed"
},
"binselector_probins": {
"log": "",
"state": "passed"
},
"broker": {
"log": "",
"state": "passed"
},
"broker_membrane": {
"log": "",
"state": "passed"
},
"bundlegridsampler": {
"log": "",
"state": "passed"
},
"bundlegridsampler_composition_energy": {
"log": "",
"state": "passed"
},
"bundlegridsampler_composition_energy_fract_range": {
"log": "",
"state": "passed"
},
"bundlegridsampler_copy_pitch": {
"log": "",
"state": "passed"
},
"bundlegridsampler_design": {
"log": "",
"state": "passed"
},
"bundlegridsampler_design_nstruct_mode": {
"log": "",
"state": "passed"
},
"bundlegridsampler_epsilon": {
"log": "",
"state": "passed"
},
"bundlegridsampler_multirepeat": {
"log": "",
"state": "passed"
},
"bundlegridsampler_z0_offset": {
"log": "",
"state": "passed"
},
"bundlegridsampler_z1_offset": {
"log": "",
"state": "passed"
},
"bundlereporter_filter": {
"log": "",
"state": "passed"
},
"burial_measure_centroid": {
"log": "",
"state": "passed"
},
"buried_area_filter": {
"log": "",
"state": "passed"
},
"buried_unsat_kinemage": {
"log": "",
"state": "passed"
},
"buried_unsat_voids_hbnet_design": {
"log": "",
"state": "passed"
},
"buried_unsat_voids_hbnet_design_symm": {
"log": "",
"state": "passed"
},
"c-term_conjugation": {
"log": "",
"state": "passed"
},
"calculate_sasa": {
"log": "",
"state": "passed"
},
"carbohydrates": {
"log": "",
"state": "passed"
},
"cart_min_glycans": {
"log": "",
"state": "passed"
},
"cartesianddg": {
"log": "",
"state": "passed"
},
"case_sensitive_filenames": {
"log": "",
"state": "passed"
},
"ccd_ends_graft_mover_rs": {
"log": "",
"state": "passed"
},
"central_class_modification": {
"log": "",
"state": "passed"
},
"centroid_disulfide_scores": {
"log": "",
"state": "passed"
},
"centroid_from_fullatom": {
"log": "",
"state": "passed"
},
"cl_complex_rescore": {
"log": "",
"state": "passed"
},
"classic_relax_1a19": {
"log": "",
"state": "passed"
},
"cleanAlignment": {
"log": "",
"state": "passed"
},
"cluster": {
"log": "",
"state": "passed"
},
"cluster_alns": {
"log": "",
"state": "passed"
},
"cluster_calibur": {
"log": "",
"state": "passed"
},
"cluster_filter": {
"log": "",
"state": "passed"
},
"cmaes_minimizer": {
"log": "Brief Diff:\nFiles /home/benchmark/working_dir/master:62063/cmaes_minimizer/log and /home/benchmark/working_dir/master:62064/cmaes_minimizer/log differ\r\nFiles /home/benchmark/working_dir/master:62063/cmaes_minimizer/min_pose.pdb and /home/benchmark/working_dir/master:62064/cmaes_minimizer/min_pose.pdb differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/master:62063/cmaes_minimizer/log /home/benchmark/working_dir/master:62064/cmaes_minimizer/log\r\n95c95\r\n< core.optimization.CMAES_Minimizer: Stop: TolFun: function value differences 9.92e-04 < stopTolFun=1.00e-03\r\n---\r\n> core.optimization.CMAES_Minimizer: Stop: TolFun: function value differences 9.81e-04 < stopTolFun=1.00e-03\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/master:62063/cmaes_minimizer/min_pose.pdb /home/benchmark/working_dir/master:62064/cmaes_minimizer/min_pose.pdb\r\n24c24\r\n< ATOM 15 C ALA 3 37.372 13.738 -6.461 1.00 0.00 C \r\n---\r\n> ATOM 15 C ALA 3 37.372 13.739 -6.461 1.00 0.00 C \r\n28c28\r\n< ATOM 19 HA ALA 3 36.927 11.666 -6.372 1.00 0.00 H \r\n---\r\n> ATOM 19 HA ALA 3 36.927 11.667 -6.372 1.00 0.00 H \r\n30c30\r\n< ATOM 21 2HB ALA 3 37.456 12.899 -9.179 1.00 0.00 H \r\n---\r\n> ATOM 21 2HB ALA 3 37.456 12.899 -9.180 1.00 0.00 H \r\n32,112c32,112\r\n< ATOM 23 N ALA 4 36.830 15.045 -6.861 1.00 0.00 N \r\n< ATOM 24 CA ALA 4 37.613 16.048 -6.147 1.00 0.00 C \r\n< ATOM 25 C ALA 4 37.376 15.959 -4.657 1.00 0.00 C \r\n< ATOM 26 O ALA 4 38.267 16.204 -3.835 1.00 0.00 O \r\n< ATOM 27 CB ALA 4 37.249 17.425 -6.726 1.00 0.00 C \r\n< ATOM 28 H ALA 4 36.016 15.226 -7.547 1.00 0.00 H \r\n< ATOM 29 HA ALA 4 38.688 15.849 -6.320 1.00 0.00 H \r\n< ATOM 30 1HB ALA 4 37.465 17.484 -7.810 1.00 0.00 H \r\n< ATOM 31 2HB ALA 4 36.175 17.661 -6.599 1.00 0.00 H \r\n< ATOM 32 3HB ALA 4 37.820 18.240 -6.245 1.00 0.00 H \r\n< ATOM 33 N ALA 5 36.045 15.570 -4.171 1.00 0.00 N \r\n< ATOM 34 CA ALA 5 36.090 15.689 -2.716 1.00 0.00 C \r\n< ATOM 35 C ALA 5 36.959 14.612 -2.113 1.00 0.00 C \r\n< ATOM 36 O ALA 5 37.632 14.806 -1.093 1.00 0.00 O \r\n< ATOM 37 CB ALA 5 34.642 15.646 -2.200 1.00 0.00 C \r\n< ATOM 38 H ALA 5 35.202 15.258 -4.770 1.00 0.00 H \r\n< ATOM 39 HA ALA 5 36.545 16.663 -2.455 1.00 0.00 H \r\n< ATOM 40 1HB ALA 5 34.030 16.465 -2.623 1.00 0.00 H \r\n< ATOM 41 2HB ALA 5 34.134 14.697 -2.459 1.00 0.00 H \r\n< ATOM 42 3HB ALA 5 34.594 15.751 -1.101 1.00 0.00 H \r\n< ATOM 43 N ALA 6 37.006 13.292 -2.756 1.00 0.00 N \r\n< ATOM 44 CA ALA 6 37.850 12.453 -1.910 1.00 0.00 C \r\n< ATOM 45 C ALA 6 39.289 12.909 -1.959 1.00 0.00 C \r\n< ATOM 46 O ALA 6 40.030 12.852 -0.971 1.00 0.00 O \r\n< ATOM 47 CB ALA 6 37.671 10.996 -2.369 1.00 0.00 C \r\n< ATOM 48 H ALA 6 36.516 13.000 -3.673 1.00 0.00 H \r\n< ATOM 49 HA ALA 6 37.510 12.554 -0.862 1.00 0.00 H \r\n< ATOM 50 1HB ALA 6 36.617 10.667 -2.290 1.00 0.00 H \r\n< ATOM 51 2HB ALA 6 37.976 10.850 -3.423 1.00 0.00 H \r\n< ATOM 52 3HB ALA 6 38.268 10.296 -1.758 1.00 0.00 H \r\n< ATOM 53 N ALA 7 39.824 13.439 -3.222 1.00 0.00 N \r\n< ATOM 54 CA ALA 7 41.243 13.694 -2.989 1.00 0.00 C \r\n< ATOM 55 C ALA 7 41.434 14.819 -1.998 1.00 0.00 C \r\n< ATOM 56 O ALA 7 42.368 14.828 -1.188 1.00 0.00 O \r\n< ATOM 57 CB ALA 7 41.896 13.983 -4.351 1.00 0.00 C \r\n< ATOM 58 H ALA 7 39.279 13.604 -4.138 1.00 0.00 H \r\n< ATOM 59 HA ALA 7 41.699 12.788 -2.547 1.00 0.00 H \r\n< ATOM 60 1HB ALA 7 41.779 13.134 -5.051 1.00 0.00 H \r\n< ATOM 61 2HB ALA 7 41.455 14.871 -4.844 1.00 0.00 H \r\n< ATOM 62 3HB ALA 7 42.980 14.170 -4.257 1.00 0.00 H \r\n< ATOM 63 N ALA 8 40.479 15.936 -1.997 1.00 0.00 N \r\n< ATOM 64 CA ALA 8 40.972 16.895 -1.013 1.00 0.00 C \r\n< ATOM 65 C ALA 8 40.900 16.323 0.383 1.00 0.00 C \r\n< ATOM 66 O ALA 8 41.762 16.563 1.236 1.00 0.00 O \r\n< ATOM 67 CB ALA 8 40.153 18.187 -1.170 1.00 0.00 C \r\n< ATOM 68 H ALA 8 39.590 16.030 -2.604 1.00 0.00 H \r\n< ATOM 69 HA ALA 8 42.037 17.105 -1.226 1.00 0.00 H \r\n< ATOM 70 1HB ALA 8 40.248 18.613 -2.187 1.00 0.00 H \r\n< ATOM 71 2HB ALA 8 39.073 18.022 -0.989 1.00 0.00 H \r\n< ATOM 72 3HB ALA 8 40.484 18.972 -0.465 1.00 0.00 H \r\n< ATOM 73 N ALA 9 39.769 15.452 0.737 1.00 0.00 N \r\n< ATOM 74 CA ALA 9 39.883 15.198 2.171 1.00 0.00 C \r\n< ATOM 75 C ALA 9 40.927 14.144 2.452 1.00 0.00 C \r\n< ATOM 76 O ALA 9 41.342 13.920 3.596 1.00 0.00 O \r\n< ATOM 77 CB ALA 9 38.487 14.808 2.687 1.00 0.00 C \r\n< ATOM 78 H ALA 9 39.007 15.075 0.071 1.00 0.00 H \r\n< ATOM 79 HA ALA 9 40.213 16.129 2.670 1.00 0.00 H \r\n< ATOM 80 1HB ALA 9 37.744 15.608 2.507 1.00 0.00 H \r\n< ATOM 81 2HB ALA 9 38.103 13.893 2.198 1.00 0.00 H \r\n< ATOM 82 3HB ALA 9 38.490 14.618 3.776 1.00 0.00 H \r\n< ATOM 83 N ALA 10 41.466 13.360 1.332 1.00 0.00 N \r\n< ATOM 84 CA ALA 10 42.428 12.426 1.911 1.00 0.00 C \r\n< ATOM 85 C ALA 10 43.777 13.081 2.087 1.00 0.00 C \r\n< ATOM 86 O ALA 10 44.747 12.471 2.555 1.00 0.00 O \r\n< ATOM 87 CB ALA 10 42.481 11.186 1.003 1.00 0.00 C \r\n< ATOM 88 H ALA 10 41.204 13.455 0.288 1.00 0.00 H \r\n< ATOM 89 HA ALA 10 42.072 12.131 2.917 1.00 0.00 H \r\n< ATOM 90 1HB ALA 10 41.491 10.699 0.915 1.00 0.00 H \r\n< ATOM 91 2HB ALA 10 42.809 11.436 -0.025 1.00 0.00 H \r\n< ATOM 92 3HB ALA 10 43.178 10.422 1.389 1.00 0.00 H \r\n< ATOM 93 N ALA 11 43.945 14.486 1.691 1.00 0.00 N \r\n< ATOM 94 CA ALA 11 45.364 14.789 1.844 1.00 0.00 C \r\n< ATOM 95 C ALA 11 45.665 15.277 3.241 1.00 0.00 C \r\n< ATOM 96 O ALA 11 44.786 15.376 4.105 1.00 0.00 O \r\n< ATOM 97 OXT ALA 11 46.786 15.583 3.541 1.00 0.00 O \r\n< ATOM 98 CB ALA 11 45.742 15.814 0.760 1.00 0.00 C \r\n< ATOM 99 H ALA 11 43.170 15.161 1.354 1.00 0.00 H \r\n< ATOM 100 HA ALA 11 45.943 13.859 1.689 1.00 0.00 H \r\n< ATOM 101 1HB ALA 11 45.550 15.424 -0.258 1.00 0.00 H \r\n< ATOM 102 2HB ALA 11 45.169 16.756 0.859 1.00 0.00 H \r\n< ATOM 103 3HB ALA 11 46.814 16.079 0.801 1.00 0.00 H \r\n---\r\n> ATOM 23 N ALA 4 36.831 15.045 -6.862 1.00 0.00 N \r\n> ATOM 24 CA ALA 4 37.614 16.049 -6.148 1.00 0.00 C \r\n> ATOM 25 C ALA 4 37.376 15.960 -4.659 1.00 0.00 C \r\n> ATOM 26 O ALA 4 38.267 16.203 -3.836 1.00 0.00 O \r\n> ATOM 27 CB ALA 4 37.249 17.426 -6.728 1.00 0.00 C \r\n> ATOM 28 H ALA 4 36.018 15.226 -7.549 1.00 0.00 H \r\n> ATOM 29 HA ALA 4 38.688 15.849 -6.321 1.00 0.00 H \r\n> ATOM 30 1HB ALA 4 37.465 17.485 -7.812 1.00 0.00 H \r\n> ATOM 31 2HB ALA 4 36.175 17.661 -6.600 1.00 0.00 H \r\n> ATOM 32 3HB ALA 4 37.820 18.241 -6.246 1.00 0.00 H \r\n> ATOM 33 N ALA 5 36.044 15.573 -4.172 1.00 0.00 N \r\n> ATOM 34 CA ALA 5 36.089 15.691 -2.718 1.00 0.00 C \r\n> ATOM 35 C ALA 5 36.961 14.614 -2.116 1.00 0.00 C \r\n> ATOM 36 O ALA 5 37.635 14.810 -1.096 1.00 0.00 O \r\n> ATOM 37 CB ALA 5 34.641 15.645 -2.201 1.00 0.00 C \r\n> ATOM 38 H ALA 5 35.201 15.263 -4.771 1.00 0.00 H \r\n> ATOM 39 HA ALA 5 36.543 16.665 -2.456 1.00 0.00 H \r\n> ATOM 40 1HB ALA 5 34.028 16.463 -2.623 1.00 0.00 H \r\n> ATOM 41 2HB ALA 5 34.136 14.695 -2.461 1.00 0.00 H \r\n> ATOM 42 3HB ALA 5 34.594 15.749 -1.102 1.00 0.00 H \r\n> ATOM 43 N ALA 6 37.009 13.294 -2.759 1.00 0.00 N \r\n> ATOM 44 CA ALA 6 37.853 12.456 -1.913 1.00 0.00 C \r\n> ATOM 45 C ALA 6 39.291 12.914 -1.960 1.00 0.00 C \r\n> ATOM 46 O ALA 6 40.031 12.858 -0.972 1.00 0.00 O \r\n> ATOM 47 CB ALA 6 37.676 10.999 -2.373 1.00 0.00 C \r\n> ATOM 48 H ALA 6 36.518 13.002 -3.676 1.00 0.00 H \r\n> ATOM 49 HA ALA 6 37.512 12.556 -0.865 1.00 0.00 H \r\n> ATOM 50 1HB ALA 6 36.623 10.668 -2.295 1.00 0.00 H \r\n> ATOM 51 2HB ALA 6 37.982 10.855 -3.427 1.00 0.00 H \r\n> ATOM 52 3HB ALA 6 38.274 10.299 -1.762 1.00 0.00 H \r\n> ATOM 53 N ALA 7 39.827 13.444 -3.223 1.00 0.00 N \r\n> ATOM 54 CA ALA 7 41.246 13.701 -2.989 1.00 0.00 C \r\n> ATOM 55 C ALA 7 41.434 14.826 -1.998 1.00 0.00 C \r\n> ATOM 56 O ALA 7 42.368 14.836 -1.187 1.00 0.00 O \r\n> ATOM 57 CB ALA 7 41.898 13.992 -4.351 1.00 0.00 C \r\n> ATOM 58 H ALA 7 39.282 13.610 -4.140 1.00 0.00 H \r\n> ATOM 59 HA ALA 7 41.702 12.796 -2.547 1.00 0.00 H \r\n> ATOM 60 1HB ALA 7 41.783 13.142 -5.051 1.00 0.00 H \r\n> ATOM 61 2HB ALA 7 41.457 14.879 -4.844 1.00 0.00 H \r\n> ATOM 62 3HB ALA 7 42.983 14.179 -4.256 1.00 0.00 H \r\n> ATOM 63 N ALA 8 40.478 15.942 -1.997 1.00 0.00 N \r\n> ATOM 64 CA ALA 8 40.970 16.901 -1.012 1.00 0.00 C \r\n> ATOM 65 C ALA 8 40.898 16.328 0.383 1.00 0.00 C \r\n> ATOM 66 O ALA 8 41.759 16.570 1.237 1.00 0.00 O \r\n> ATOM 67 CB ALA 8 40.150 18.193 -1.169 1.00 0.00 C \r\n> ATOM 68 H ALA 8 39.590 16.035 -2.604 1.00 0.00 H \r\n> ATOM 69 HA ALA 8 42.035 17.113 -1.225 1.00 0.00 H \r\n> ATOM 70 1HB ALA 8 40.244 18.619 -2.186 1.00 0.00 H \r\n> ATOM 71 2HB ALA 8 39.070 18.026 -0.989 1.00 0.00 H \r\n> ATOM 72 3HB ALA 8 40.479 18.978 -0.464 1.00 0.00 H \r\n> ATOM 73 N ALA 9 39.768 15.456 0.737 1.00 0.00 N \r\n> ATOM 74 CA ALA 9 39.881 15.202 2.171 1.00 0.00 C \r\n> ATOM 75 C ALA 9 40.926 14.149 2.452 1.00 0.00 C \r\n> ATOM 76 O ALA 9 41.341 13.925 3.595 1.00 0.00 O \r\n> ATOM 77 CB ALA 9 38.486 14.811 2.686 1.00 0.00 C \r\n> ATOM 78 H ALA 9 39.007 15.078 0.070 1.00 0.00 H \r\n> ATOM 79 HA ALA 9 40.211 16.133 2.670 1.00 0.00 H \r\n> ATOM 80 1HB ALA 9 37.742 15.610 2.505 1.00 0.00 H \r\n> ATOM 81 2HB ALA 9 38.103 13.895 2.197 1.00 0.00 H \r\n> ATOM 82 3HB ALA 9 38.488 14.619 3.775 1.00 0.00 H \r\n> ATOM 83 N ALA 10 41.467 13.365 1.331 1.00 0.00 N \r\n> ATOM 84 CA ALA 10 42.429 12.432 1.911 1.00 0.00 C \r\n> ATOM 85 C ALA 10 43.777 13.088 2.088 1.00 0.00 C \r\n> ATOM 86 O ALA 10 44.748 12.479 2.556 1.00 0.00 O \r\n> ATOM 87 CB ALA 10 42.484 11.193 1.002 1.00 0.00 C \r\n> ATOM 88 H ALA 10 41.205 13.460 0.288 1.00 0.00 H \r\n> ATOM 89 HA ALA 10 42.074 12.137 2.916 1.00 0.00 H \r\n> ATOM 90 1HB ALA 10 41.494 10.704 0.915 1.00 0.00 H \r\n> ATOM 91 2HB ALA 10 42.811 11.443 -0.025 1.00 0.00 H \r\n> ATOM 92 3HB ALA 10 43.181 10.429 1.389 1.00 0.00 H \r\n> ATOM 93 N ALA 11 43.944 14.494 1.692 1.00 0.00 N \r\n> ATOM 94 CA ALA 11 45.363 14.798 1.844 1.00 0.00 C \r\n> ATOM 95 C ALA 11 45.664 15.289 3.240 1.00 0.00 C \r\n> ATOM 96 O ALA 11 44.784 15.390 4.104 1.00 0.00 O \r\n> ATOM 97 OXT ALA 11 46.784 15.597 3.540 1.00 0.00 O \r\n> ATOM 98 CB ALA 11 45.741 15.820 0.758 1.00 0.00 C \r\n> ATOM 99 H ALA 11 43.169 15.168 1.355 1.00 0.00 H \r\n> ATOM 100 HA ALA 11 45.942 13.868 1.692 1.00 0.00 H \r\n> ATOM 101 1HB ALA 11 45.549 15.428 -0.259 1.00 0.00 H \r\n> ATOM 102 2HB ALA 11 45.167 16.762 0.854 1.00 0.00 H \r\n> ATOM 103 3HB ALA 11 46.813 16.086 0.799 1.00 0.00 H \r\n118,128c118,128\r\n< pose -24.6959 4.77355 24.4152 0.01055 0 -2.65853 -10.1663 0 -5.28054 0 0 0 0 0.08274 0 -0.76918 0 13.2468 -3.47549 -4.51707\r\n< ALA:NtermProteinFull_1 -2.02807 0.33698 1.43722 0.00167 0 -0.18192 -0.92058 0 0 0 0 0 0 -0.00097 0 0 0 1.32468 0 -0.03099\r\n< ALA_2 -1.9405 0.46005 1.98048 0.00095 0 -0.20456 -1.15594 0 0 0 0 0 0 -0.03216 0 -0.1912 0 1.32468 -0.29008 -0.04827\r\n< ALA_3 -2.41062 0.4939 2.29827 0.00095 0 -0.28341 -0.72533 0 0 0 0 0 0 0.0055 0 -0.16426 0 1.32468 -0.53428 0.00541\r\n< ALA_4 -3.24977 0.48734 2.6492 0.00094 0 -0.34147 -0.78104 0 0 0 0 0 0 -0.03686 0 -0.04485 0 1.32468 -0.38353 -0.37536\r\n< ALA_5 -3.34246 0.46868 3.386 0.00095 0 -0.32642 -1.81802 0 0 0 0 0 0 -0.02058 0 -0.09566 0 1.32468 -0.30029 -0.72313\r\n< ALA_6 -3.15865 0.47636 3.18667 0.00095 0 -0.40735 -1.38614 0 0 0 0 0 0 -0.02795 0 -0.14052 0 1.32468 -0.36761 -0.49956\r\n< ALA_7 -2.81652 0.50565 2.86862 0.00095 0 -0.32667 -1.40476 0 0 0 0 0 0 0.10612 0 -0.15655 0 1.32468 -0.40341 -0.30187\r\n< ALA_8 -2.26018 0.56107 2.41281 0.00097 0 -0.22285 -0.73801 0 0 0 0 0 0 -0.02743 0 -0.04475 0 1.32468 -0.44855 0.55776\r\n< ALA_9 -2.01286 0.59917 2.15779 0.00108 0 -0.17549 -1.12933 0 0 0 0 0 0 0.11708 0 0.0686 0 1.32468 -0.49977 0.45094\r\n< ALA:CtermProteinFull_10 -1.47629 0.38434 2.03816 0.00114 0 -0.18841 -0.1071 0 0 0 0 0 0 0 0 0 0 1.32468 -0.24798 1.72854\r\n---\r\n> pose -24.7036 4.78203 24.4238 0.01055 0 -2.65507 -10.1676 0 -5.27835 0 0 0 0 0.0854 0 -0.77773 0 13.2468 -3.48319 -4.51695\r\n> ALA:NtermProteinFull_1 -2.028 0.33642 1.43577 0.00167 0 -0.18073 -0.9192 0 0 0 0 0 0 -0.00099 0 0 0 1.32468 0 -0.03039\r\n> ALA_2 -1.94167 0.45977 1.98167 0.00095 0 -0.20402 -1.15362 0 0 0 0 0 0 -0.03251 0 -0.19094 0 1.32468 -0.28911 -0.04481\r\n> ALA_3 -2.41256 0.49578 2.3022 0.00095 0 -0.28265 -0.72527 0 0 0 0 0 0 0.00437 0 -0.16638 0 1.32468 -0.53298 0.00815\r\n> ALA_4 -3.25138 0.4896 2.65106 0.00094 0 -0.34123 -0.78168 0 0 0 0 0 0 -0.03579 0 -0.04963 0 1.32468 -0.38689 -0.38032\r\n> ALA_5 -3.34583 0.47043 3.38914 0.00095 0 -0.32523 -1.82035 0 0 0 0 0 0 -0.01992 0 -0.0975 0 1.32468 -0.30513 -0.72877\r\n> ALA_6 -3.15965 0.47676 3.18843 0.00095 0 -0.40682 -1.38534 0 0 0 0 0 0 -0.02793 0 -0.14041 0 1.32468 -0.36884 -0.49816\r\n> ALA_7 -2.81612 0.50547 2.8692 0.00095 0 -0.32694 -1.40447 0 0 0 0 0 0 0.10599 0 -0.15666 0 1.32468 -0.40369 -0.30158\r\n> ALA_8 -2.25989 0.56111 2.413 0.00097 0 -0.22257 -0.7396 0 0 0 0 0 0 -0.02743 0 -0.04463 0 1.32468 -0.44858 0.55705\r\n> ALA_9 -2.01214 0.60053 2.15626 0.00108 0 -0.17558 -1.13065 0 0 0 0 0 0 0.11962 0 0.06843 0 1.32468 -0.4998 0.45243\r\n> ALA:CtermProteinFull_10 -1.47634 0.38616 2.0371 0.00114 0 -0.18929 -0.10746 0 0 0 0 0 0 0 0 0 0 1.32468 -0.24818 1.72781\r\n134c134\r\n< TOTAL_SCORE: -4.51707\r\n---\r\n> TOTAL_SCORE: -4.51695\r\n136,146c136,146\r\n< TOTAL_WTD: fa_atr: -24.696 fa_rep: 4.774 fa_sol: 24.415 fa_intra_rep: 0.011 fa_intra_sol_xover4: 0.000 lk_ball_wtd: -2.659 fa_elec: -10.166 pro_close: 0.000 hbond_sr_bb: -5.281 hbond_lr_bb: 0.000 hbond_bb_sc: 0.000 hbond_sc: 0.000 dslf_fa13: 0.000 omega: 0.083 fa_dun: 0.000 p_aa_pp: -0.769 yhh_planarity: 0.000 ref: 13.247 rama_prepro: -3.475\r\n< RSD_WTD: 1 fa_atr: -2.028 fa_rep: 0.337 fa_sol: 1.437 fa_intra_rep: 0.002 fa_intra_sol_xover4: 0.000 lk_ball_wtd: -0.182 fa_elec: -0.921 pro_close: 0.000 hbond_sr_bb: 0.000 hbond_lr_bb: 0.000 hbond_bb_sc: 0.000 hbond_sc: 0.000 dslf_fa13: 0.000 omega: -0.001 fa_dun: 0.000 p_aa_pp: 0.000 yhh_planarity: 0.000 ref: 1.325 rama_prepro: 0.000\r\n< RSD_WTD: 2 fa_atr: -1.940 fa_rep: 0.460 fa_sol: 1.980 fa_intra_rep: 0.001 fa_intra_sol_xover4: 0.000 lk_ball_wtd: -0.205 fa_elec: -1.156 pro_close: 0.000 hbond_sr_bb: 0.000 hbond_lr_bb: 0.000 hbond_bb_sc: 0.000 hbond_sc: 0.000 dslf_fa13: 0.000 omega: -0.032 fa_dun: 0.000 p_aa_pp: -0.191 yhh_planarity: 0.000 ref: 1.325 rama_prepro: -0.290\r\n< RSD_WTD: 3 fa_atr: -2.411 fa_rep: 0.494 fa_sol: 2.298 fa_intra_rep: 0.001 fa_intra_sol_xover4: 0.000 lk_ball_wtd: -0.283 fa_elec: -0.725 pro_close: 0.000 hbond_sr_bb: 0.000 hbond_lr_bb: 0.000 hbond_bb_sc: 0.000 hbond_sc: 0.000 dslf_fa13: 0.000 omega: 0.005 fa_dun: 0.000 p_aa_pp: -0.164 yhh_planarity: 0.000 ref: 1.325 rama_prepro: -0.534\r\n< RSD_WTD: 4 fa_atr: -3.250 fa_rep: 0.487 fa_sol: 2.649 fa_intra_rep: 0.001 fa_intra_sol_xover4: 0.000 lk_ball_wtd: -0.341 fa_elec: -0.781 pro_close: 0.000 hbond_sr_bb: 0.000 hbond_lr_bb: 0.000 hbond_bb_sc: 0.000 hbond_sc: 0.000 dslf_fa13: 0.000 omega: -0.037 fa_dun: 0.000 p_aa_pp: -0.045 yhh_planarity: 0.000 ref: 1.325 rama_prepro: -0.384\r\n< RSD_WTD: 5 fa_atr: -3.342 fa_rep: 0.469 fa_sol: 3.386 fa_intra_rep: 0.001 fa_intra_sol_xover4: 0.000 lk_ball_wtd: -0.326 fa_elec: -1.818 pro_close: 0.000 hbond_sr_bb: 0.000 hbond_lr_bb: 0.000 hbond_bb_sc: 0.000 hbond_sc: 0.000 dslf_fa13: 0.000 omega: -0.021 fa_dun: 0.000 p_aa_pp: -0.096 yhh_planarity: 0.000 ref: 1.325 rama_prepro: -0.300\r\n< RSD_WTD: 6 fa_atr: -3.159 fa_rep: 0.476 fa_sol: 3.187 fa_intra_rep: 0.001 fa_intra_sol_xover4: 0.000 lk_ball_wtd: -0.407 fa_elec: -1.386 pro_close: 0.000 hbond_sr_bb: 0.000 hbond_lr_bb: 0.000 hbond_bb_sc: 0.000 hbond_sc: 0.000 dslf_fa13: 0.000 omega: -0.028 fa_dun: 0.000 p_aa_pp: -0.141 yhh_planarity: 0.000 ref: 1.325 rama_prepro: -0.368\r\n< RSD_WTD: 7 fa_atr: -2.817 fa_rep: 0.506 fa_sol: 2.869 fa_intra_rep: 0.001 fa_intra_sol_xover4: 0.000 lk_ball_wtd: -0.327 fa_elec: -1.405 pro_close: 0.000 hbond_sr_bb: 0.000 hbond_lr_bb: 0.000 hbond_bb_sc: 0.000 hbond_sc: 0.000 dslf_fa13: 0.000 omega: 0.106 fa_dun: 0.000 p_aa_pp: -0.157 yhh_planarity: 0.000 ref: 1.325 rama_prepro: -0.403\r\n< RSD_WTD: 8 fa_atr: -2.260 fa_rep: 0.561 fa_sol: 2.413 fa_intra_rep: 0.001 fa_intra_sol_xover4: 0.000 lk_ball_wtd: -0.223 fa_elec: -0.738 pro_close: 0.000 hbond_sr_bb: 0.000 hbond_lr_bb: 0.000 hbond_bb_sc: 0.000 hbond_sc: 0.000 dslf_fa13: 0.000 omega: -0.027 fa_dun: 0.000 p_aa_pp: -0.045 yhh_planarity: 0.000 ref: 1.325 rama_prepro: -0.449\r\n< RSD_WTD: 9 fa_atr: -2.013 fa_rep: 0.599 fa_sol: 2.158 fa_intra_rep: 0.001 fa_intra_sol_xover4: 0.000 lk_ball_wtd: -0.175 fa_elec: -1.129 pro_close: 0.000 hbond_sr_bb: 0.000 hbond_lr_bb: 0.000 hbond_bb_sc: 0.000 hbond_sc: 0.000 dslf_fa13: 0.000 omega: 0.117 fa_dun: 0.000 p_aa_pp: 0.069 yhh_planarity: 0.000 ref: 1.325 rama_prepro: -0.500\r\n< RSD_WTD: 10 fa_atr: -1.476 fa_rep: 0.384 fa_sol: 2.038 fa_intra_rep: 0.001 fa_intra_sol_xover4: 0.000 lk_ball_wtd: -0.188 fa_elec: -0.107 pro_close: 0.000 hbond_sr_bb: 0.000 hbond_lr_bb: 0.000 hbond_bb_sc: 0.000 hbond_sc: 0.000 dslf_fa13: 0.000 omega: 0.000 fa_dun: 0.000 p_aa_pp: 0.000 yhh_planarity: 0.000 ref: 1.325 rama_prepro: -0.248\r\n---\r\n> TOTAL_WTD: fa_atr: -24.704 fa_rep: 4.782 fa_sol: 24.424 fa_intra_rep: 0.011 fa_intra_sol_xover4: 0.000 lk_ball_wtd: -2.655 fa_elec: -10.168 pro_close: 0.000 hbond_sr_bb: -5.278 hbond_lr_bb: 0.000 hbond_bb_sc: 0.000 hbond_sc: 0.000 dslf_fa13: 0.000 omega: 0.085 fa_dun: 0.000 p_aa_pp: -0.778 yhh_planarity: 0.000 ref: 13.247 rama_prepro: -3.483\r\n> RSD_WTD: 1 fa_atr: -2.028 fa_rep: 0.336 fa_sol: 1.436 fa_intra_rep: 0.002 fa_intra_sol_xover4: 0.000 lk_ball_wtd: -0.181 fa_elec: -0.919 pro_close: 0.000 hbond_sr_bb: 0.000 hbond_lr_bb: 0.000 hbond_bb_sc: 0.000 hbond_sc: 0.000 dslf_fa13: 0.000 omega: -0.001 fa_dun: 0.000 p_aa_pp: 0.000 yhh_planarity: 0.000 ref: 1.325 rama_prepro: 0.000\r\n> RSD_WTD: 2 fa_atr: -1.942 fa_rep: 0.460 fa_sol: 1.982 fa_intra_rep: 0.001 fa_intra_sol_xover4: 0.000 lk_ball_wtd: -0.204 fa_elec: -1.154 pro_close: 0.000 hbond_sr_bb: 0.000 hbond_lr_bb: 0.000 hbond_bb_sc: 0.000 hbond_sc: 0.000 dslf_fa13: 0.000 omega: -0.033 fa_dun: 0.000 p_aa_pp: -0.191 yhh_planarity: 0.000 ref: 1.325 rama_prepro: -0.289\r\n> RSD_WTD: 3 fa_atr: -2.413 fa_rep: 0.496 fa_sol: 2.302 fa_intra_rep: 0.001 fa_intra_sol_xover4: 0.000 lk_ball_wtd: -0.283 fa_elec: -0.725 pro_close: 0.000 hbond_sr_bb: 0.000 hbond_lr_bb: 0.000 hbond_bb_sc: 0.000 hbond_sc: 0.000 dslf_fa13: 0.000 omega: 0.004 fa_dun: 0.000 p_aa_pp: -0.166 yhh_planarity: 0.000 ref: 1.325 rama_prepro: -0.533\r\n> RSD_WTD: 4 fa_atr: -3.251 fa_rep: 0.490 fa_sol: 2.651 fa_intra_rep: 0.001 fa_intra_sol_xover4: 0.000 lk_ball_wtd: -0.341 fa_elec: -0.782 pro_close: 0.000 hbond_sr_bb: 0.000 hbond_lr_bb: 0.000 hbond_bb_sc: 0.000 hbond_sc: 0.000 dslf_fa13: 0.000 omega: -0.036 fa_dun: 0.000 p_aa_pp: -0.050 yhh_planarity: 0.000 ref: 1.325 rama_prepro: -0.387\r\n> RSD_WTD: 5 fa_atr: -3.346 fa_rep: 0.470 fa_sol: 3.389 fa_intra_rep: 0.001 fa_intra_sol_xover4: 0.000 lk_ball_wtd: -0.325 fa_elec: -1.820 pro_close: 0.000 hbond_sr_bb: 0.000 hbond_lr_bb: 0.000 hbond_bb_sc: 0.000 hbond_sc: 0.000 dslf_fa13: 0.000 omega: -0.020 fa_dun: 0.000 p_aa_pp: -0.098 yhh_planarity: 0.000 ref: 1.325 rama_prepro: -0.305\r\n> RSD_WTD: 6 fa_atr: -3.160 fa_rep: 0.477 fa_sol: 3.188 fa_intra_rep: 0.001 fa_intra_sol_xover4: 0.000 lk_ball_wtd: -0.407 fa_elec: -1.385 pro_close: 0.000 hbond_sr_bb: 0.000 hbond_lr_bb: 0.000 hbond_bb_sc: 0.000 hbond_sc: 0.000 dslf_fa13: 0.000 omega: -0.028 fa_dun: 0.000 p_aa_pp: -0.140 yhh_planarity: 0.000 ref: 1.325 rama_prepro: -0.369\r\n> RSD_WTD: 7 fa_atr: -2.816 fa_rep: 0.505 fa_sol: 2.869 fa_intra_rep: 0.001 fa_intra_sol_xover4: 0.000 lk_ball_wtd: -0.327 fa_elec: -1.404 pro_close: 0.000 hbond_sr_bb: 0.000 hbond_lr_bb: 0.000 hbond_bb_sc: 0.000 hbond_sc: 0.000 dslf_fa13: 0.000 omega: 0.106 fa_dun: 0.000 p_aa_pp: -0.157 yhh_planarity: 0.000 ref: 1.325 rama_prepro: -0.404\r\n> RSD_WTD: 8 fa_atr: -2.260 fa_rep: 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"contactMap": {
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"coupled_moves": {
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"crankshaft_flip": {
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"cyclization": {
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"state": "passed"
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"database_jd2_io": {
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"database_md5": {
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"database_session_resource": {
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"ddG_ensemble": {
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"ddG_of_mutation": {
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"ddG_scan": {
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"ddG_sym": {
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"density_denovo": {
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"density_refine": {
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"density_tools": {
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"dgdp_aio": {
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"distances": {
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"dna_interface_design": {
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"dock_glycans": {
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"dock_with_hotspot_place_simultaneously": {
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"docking_ensemble": {
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"docking_full_protocol": {
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"docking_local_refine": {
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"docking_local_refine_min": {
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"docking_low_res": {
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"doug_dock_design_min_mod2_cal_cal": {
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"state": "passed"
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"state": "passed"
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"drrafter_run": {
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"drrafter_setup": {
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"drrafter_setup_build_missing": {
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"state": "passed"
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"drrafter_setup_protein_dock": {
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"drrafter_setup_real_test_H": {
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"drrafter_setup_real_test_H_no_init": {
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"drrafter_setup_ribosome_test": {
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"drrafter_setup_simple": {
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"duplicate_header_guards": {
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"energy_based_clustering_alpha_aa": {
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"state": "passed"
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"energy_based_clustering_alpha_aa_bin_analysis": {
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"state": "passed"
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"energy_based_clustering_alpha_aa_dihedral": {
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},
"energy_based_clustering_alpha_aa_scorefile": {
"log": "Brief Diff:\nFiles /home/benchmark/working_dir/master:62063/energy_based_clustering_alpha_aa_scorefile/.test_did_not_run.log and /home/benchmark/working_dir/master:62064/energy_based_clustering_alpha_aa_scorefile/.test_did_not_run.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/master:62063/energy_based_clustering_alpha_aa_scorefile/.test_did_not_run.log /home/benchmark/working_dir/master:62064/energy_based_clustering_alpha_aa_scorefile/.test_did_not_run.log\r\n1c1\r\n< *** Test energy_based_clustering_alpha_aa_scorefile did not run! Check your --mode flag and paths. [2023-12-06 09:38:57.098663]\r\n---\r\n> *** Test energy_based_clustering_alpha_aa_scorefile did not run! Check your --mode flag and paths. [2023-12-08 07:28:39.815725]\r\n\nCompare(...): Marking as \"Script failed\" due to presense of .test_did_not_run.log or .test_got_timeout_kill.log file!\n",
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"entropy_correction": {
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"enumerative_sampling": {
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"enzdes": {
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"enzscore_filter_dimetal": {
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"enzscore_filter_dimetal_sym": {
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"enzscore_filter_ligand": {
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"enzscore_filter_metal": {
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"enzscore_filter_metal_sym": {
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"erraser_minimize": {
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"esm_model_perplexity": {
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"evolution": {
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},
"exclusively_shared_jumps": {
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"explicit_membrane": {
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"extract_atomtree_diffs": {
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"extract_pdbs": {
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"state": "passed"
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"farfar_mrna": {
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"farnesyl": {
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"fast_relax": {
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"favor_coupling_tensor": {
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"favor_native_residue": {
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},
"features": {
"log": "Brief Diff:\nFiles /home/benchmark/working_dir/master:62063/features/log_db_output and /home/benchmark/working_dir/master:62064/features/log_db_output differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/master:62063/features/log_db_output /home/benchmark/working_dir/master:62064/features/log_db_output\r\n704,706d703\r\n< basic.io.database: Database file opened: scoring/score_functions/custom_pair_distance/pos_charge_repulsion\r\n< basic.io.database: Database file opened: scoring/score_functions/custom_pair_distance/neg_charge_repulsion\r\n< core.scoring.custom_pair_distance.FullatomCustomPairDistanceEnergy: Added 8 AtomPairFuncList lists\r\n",
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"features_pdb_mpi": {
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"features_postgres": {
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"features_scientific_benchmark": {
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"fiber_diffraction": {
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"fiber_diffraction_fad": {
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"fit_helixparams": {
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"fixbb": {
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"flexpepdock": {
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"flexpepdock_abinitio": {
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"fold_and_dock": {
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"fold_cst_new": {
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"fold_from_loops": {
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"fragment_picker": {
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"fragmentpicker_integration_demo": {
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"fuzzy": {
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"ga_ligand_dock": {
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"ga_ligand_dock_amino_acid": {
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"ga_ligand_dock_macrocycle": {
"log": "Brief Diff:\nFiles /home/benchmark/working_dir/master:62063/ga_ligand_dock_macrocycle/log and /home/benchmark/working_dir/master:62064/ga_ligand_dock_macrocycle/log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/master:62063/ga_ligand_dock_macrocycle/log /home/benchmark/working_dir/master:62064/ga_ligand_dock_macrocycle/log\r\n721c721\r\n< protocols.ligand_docking.GALigandDock.GALigandDock: ==== quick relax after optH, Use FastRelax hardcoded. \r\n---\r\n> protocols.ligand_docking.GALigandDock.GALigandDock: ==== quick relax before optH, Use FastRelax hardcoded. \r\n818c818\r\n< protocols.ligand_docking.GALigandDock.GALigandDock: ==== quick relax after optH, Use FastRelax hardcoded. \r\n---\r\n> protocols.ligand_docking.GALigandDock.GALigandDock: ==== quick relax before optH, Use FastRelax hardcoded. \r\n912c912\r\n< protocols.ligand_docking.GALigandDock.GALigandDock: ==== quick relax after optH, Use FastRelax hardcoded. \r\n---\r\n> protocols.ligand_docking.GALigandDock.GALigandDock: ==== quick relax before optH, Use FastRelax hardcoded. \r\n1006c1006\r\n< protocols.ligand_docking.GALigandDock.GALigandDock: ==== quick relax after optH, Use FastRelax hardcoded. \r\n---\r\n> protocols.ligand_docking.GALigandDock.GALigandDock: ==== quick relax before optH, Use FastRelax hardcoded. \r\n",
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"gen_apo_grids": {
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"generate_6Dloopclose": {
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"state": "passed"
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"geometric_solvation": {
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"glycan_anomers": {
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"hbonds": {
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"helical_bundle_predict": {
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"helical_bundle_predict_psipred_with_helix_globals": {
"log": "",
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"helical_bundle_predict_sequence": {
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"helix_from_sequence": {
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"hierarchical_clustering": {
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
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},
"simple_cycpep_predict_cispro": {
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},
"simple_cycpep_predict_cterm_isopeptide_lariat": {
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},
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},
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},
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},
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},
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},
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},
"simple_cycpep_predict_peptoid": {
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},
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},
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},
"simple_cycpep_predict_sidechain_isopeptide_reverse": {
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},
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},
"simple_cycpep_predict_square_pyramidal_metal": {
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},
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},
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},
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},
"simple_cycpep_predict_terminal_disulfide": {
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},
"simple_cycpep_predict_terminal_disulfide_internal_permutations": {
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},
"simple_cycpep_predict_terminal_disulfide_tails": {
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},
"simple_cycpep_predict_terminal_disulfide_tails_2": {
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},
"simple_cycpep_predict_tetrahedral_metal": {
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},
"simple_cycpep_predict_tetrahedral_metal_asp": {
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},
"simple_cycpep_predict_thioether_cis_sampling": {
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},
"simple_cycpep_predict_thioether_lariat": {
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},
"simple_cycpep_predict_tma": {
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},
"simple_cycpep_predict_trigonal_planar_metal": {
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},
"simple_cycpep_predict_trigonal_pyramidal_metal": {
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},
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},
"simple_glycosylation": {
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},
"simple_glycosylation_alternate_AAs": {
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},
"simple_grafting_movers": {
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},
"simple_hbondstoatom": {
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},
"simple_metric_cache": {
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},
"simple_metric_features": {
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},
"simple_metric_filter": {
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},
"simple_metrics": {
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},
"simple_metrics_in_protocols": {
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},
"simple_metrics_per_residue": {
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},
"site_constraint": {
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},
"small_molecule_lattice_dock": {
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},
"smallmover_resselector": {
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},
"smart_annealer": {
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},
"splice_in_4loops_longer": {
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},
"splice_in_4loops_shorter": {
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},
"splice_out_H1_H2_longer": {
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},
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},
"splice_out_H1_H2_shorter": {
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},
"splice_out_H3_longer": {
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},
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},
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},
"splice_out_L1_L2_longer": {
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},
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},
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},
"splice_out_L3_longer": {
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},
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},
"splice_out_L3_shorter": {
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},
"startfrom_file": {
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},
"stepwise_lores": {
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},
"stored_residue_subset": {
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},
"struc_set_fragment_picker": {
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},
"super_aln": {
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},
"supercharge": {
"log": "",
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},
"surface_docking": {
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},
"swa_protein_CCDclose": {
"log": "",
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},
"swa_protein_build_at_Cterminus": {
"log": "",
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},
"swa_protein_build_at_Nterminus": {
"log": "",
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},
"swa_protein_cluster": {
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},
"swa_protein_combine_loops": {
"log": "",
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},
"swa_protein_loop_sampler": {
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},
"swa_protein_prepack": {
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},
"swa_rna_erraser": {
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},
"swa_rna_gagu_01_append": {
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},
"swa_rna_gagu_02_prepend": {
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},
"swa_rna_gagu_03_append_to_silent": {
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},
"swa_rna_gagu_04_clustering": {
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},
"swa_rna_gagu_05_prepend_to_5primeterminus": {
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},
"swa_rna_gagu_06_append_to_3primeterminus": {
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},
"swa_rna_gagu_07_prepend_dinucleotide": {
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},
"swa_rna_gagu_08_append_dinucleotide": {
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},
"swa_rna_gagu_09_sample_virtual_ribose": {
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},
"swa_rna_gagu_10_prepend_and_ccd_close": {
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},
"swa_rna_gagu_11_append_and_ccd_close": {
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},
"swa_rna_gagu_12_helix_addition": {
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},
"swa_rna_gagu_13_chunk_combination_and_closure": {
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},
"swa_rna_gagu_14_combine_long_loop_filtering": {
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},
"swa_rna_gagu_15_combine_long_loop_sampling": {
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},
"swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide": {
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},
"swa_rna_gagu_17_append_floating_base": {
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},
"swa_rna_gagu_18_rebuild_bulge": {
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},
"swa_rna_gagu_19_prepend_floating_base_by_jump": {
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},
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},
"swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump": {
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},
"swa_rna_gagu_22_prepend_and_kic_close": {
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},
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},
"swa_rna_loop_clusterer": {
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},
"swa_rna_loop_sampler": {
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},
"sweep_respair_energies": {
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},
"swm_add_rosettascripts": {
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},
"swm_beta_peptide_loop": {
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},
"swm_build_full_model": {
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},
"swm_dna_bridge": {
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},
"swm_dna_loop": {
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},
"swm_general_polymer_sampler": {
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},
"swm_l_rna": {
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},
"swm_protein_CCDmove": {
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},
"swm_protein_from_scratch": {
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},
"swm_protein_loop_sampler": {
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},
"swm_protein_move_inside_coiledcoil_by_bond": {
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},
"swm_protein_move_inside_helix_by_bond": {
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},
"swm_protein_preminimize": {
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},
"swm_rna_base_pair_constraints": {
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},
"swm_rna_checkpoint_partition": {
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},
"swm_rna_fourwayjunction": {
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},
"swm_rna_loop_design": {
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},
"swm_rna_move_align_dock": {
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},
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},
"swm_rna_move_inside_helix_by_jump": {
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},
"swm_rna_move_two_strands": {
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},
"swm_rna_nickedhelix": {
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},
"swm_rna_protonated_adenosine": {
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},
"swm_rna_singleloop": {
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},
"swm_rna_srl_triplet": {
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},
"symm_disulfidize": {
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},
"symm_rotamer_boltzmann": {
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},
"symmetric_cycpep_align_and_symmetrize": {
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},
"symmetric_docking": {
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},
"symmetrical_residue_selector": {
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},
"symmetry_data_resource": {
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},
"symmetry_multicomponent": {
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},
"target_clash": {
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},
"task_selector": {
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},
"tcrmodel": {
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},
"template_features": {
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},
"tensorflow_connection_test": {
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},
"tensorflow_manager": {
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},
"tensorflow_simple_model_load_and_evaluate": {
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},
"test1_benchmark": {
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},
"test_computed_saxs_spectrum": {
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},
"test_d_l_readin": {
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},
"test_degreaser": {
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},
"test_energy_method_options": {
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},
"test_idealize": {
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},
"test_rosetta_thread_manager_advanced_API": {
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},
"test_rosetta_thread_manager_basic_API": {
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},
"thermal_sampler": {
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},
"thread_local_tracers_check": {
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},
"threefold_symm_peptide_design": {
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},
"threefoldlinkermover_tbmb": {
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},
"threefoldlinkermover_tbmb_symmetric": {
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},
"tna_base_pairs": {
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},
"torsion_restricted_sampling": {
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},
"trRosetta": {
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},
"trRosettaConstraintGenerator": {
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},
"trRosettaConstraintGenerator_rosettascripts": {
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},
"trRosettaProtocolMover": {
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},
"trRosettaProtocolMover_rosettascripts": {
"log": "",
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},
"trRosettaProtocolMover_rosettascripts_diskwrite": {
"log": "",
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},
"trRosettaProtocolMover_rosettascripts_diskwrite_only": {
"log": "",
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},
"trRosetta_test_predict": {
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},
"trRosetta_test_predict_ubiquitin": {
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},
"trRosetta_test_predict_ubiquitin_cst_file_write": {
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},
"trRosetta_test_predict_ubiquitin_cst_file_write_only": {
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},
"trRosetta_test_predict_ubiquitin_init_by_bins": {
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},
"unfolded_state_energy_calc": {
"log": "",
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},
"validate_database": {
"log": "",
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},
"vancomycin": {
"log": "",
"state": "passed"
},
"vip": {
"log": "",
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},
"voids_penalty_energy_design": {
"log": "",
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},
"voids_penalty_energy_design_symmetry": {
"log": "",
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},
"write_mol_file": {
"log": "",
"state": "passed"
},
"zinc_heterodimer": {
"log": "",
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},
"zinc_homodimer_design": {
"log": "",
"state": "passed"
},
"zinc_homodimer_setup": {
"log": "",
"state": "passed"
}
}
}