Test: ubuntu.clang.code_quality.clang_tidy 「view this page in B3 βῆτα server」
Branch: master 「revision: №62045」
Test files: 「file-system-view」 「file-list-view」
Daemon: nobu-4     Started at: 2023-09-19 21:56:12     Run time: 0:19:01      State: failed

Failed sub-tests (click for more details):
src/apps/public/loop_modeling/transform_loodo.cc src/core/scoring/hbonds/hbonds.cc src/protocols/ptm_prediction/PTMPredictionMetric.cc src/protocols/ptm_prediction/PTMPredictionTensorflowProtocol.cc src/protocols/ptm_prediction/PTMPredictionTensorflowProtocolBase.cc

{ "summary": { "failed": 5, "failed_tests": [ "src/apps/public/loop_modeling/transform_loodo.cc", "src/core/scoring/hbonds/hbonds.cc", "src/protocols/ptm_prediction/PTMPredictionMetric.cc", "src/protocols/ptm_prediction/PTMPredictionTensorflowProtocol.cc", "src/protocols/ptm_prediction/PTMPredictionTensorflowProtocolBase.cc" ], "failures_ignored": 0, "total": 4646 }, "tests": { "src/apps/public/loop_modeling/transform_loodo.cc": { "log": "/home/benchmark/rosetta/source/cmake/build_clang_tidy/../../src/numeric/xyzMatrix.hh:564:8: warning: Assigned value is garbage or undefined [clang-analyzer-core.uninitialized.Assign]\n xx_ = m.xx_; xy_ = m.xy_; xz_ = m.xz_;\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:112:3: note: Taking false branch\n if ( !stream ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:118:3: note: Loop condition is true. Entering loop body\n while ( getline(stream,line) ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:124:4: note: Taking false branch\n if ( stub_index == std::string::npos ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:127:4: note: Taking false branch\n if ( name_index == std::string::npos ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:146:9: note: Assuming the condition is false\n if ( SV.size() < 12 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:146:4: note: Taking false branch\n if ( SV.size() < 12 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:152:43: note: Calling 'parse_into_stub'\n core::kinematics::Stub to_apply_stub = parse_into_stub( SV );\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:54:7: note: Assuming the condition is false\n if ( in_vec.size() < 12 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:54:2: note: Taking false branch\n if ( in_vec.size() < 12 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:75:2: note: Calling copy assignment operator for 'xyzMatrix'\n to_apply_stub.M = M;\n ^\n/home/benchmark/rosetta/source/cmake/build_clang_tidy/../../src/numeric/xyzMatrix.hh:563:3: note: Taking true branch\n if ( this != &m ) {\n ^\n/home/benchmark/rosetta/source/cmake/build_clang_tidy/../../src/numeric/xyzMatrix.hh:564:8: note: Assigned value is garbage or undefined\n xx_ = m.xx_; xy_ = m.xy_; xz_ = m.xz_;\n ^\n/home/benchmark/rosetta/source/cmake/build_clang_tidy/../../src/numeric/xyzMatrix.hh:564:21: warning: Assigned value is garbage or undefined [clang-analyzer-core.uninitialized.Assign]\n xx_ = m.xx_; xy_ = m.xy_; xz_ = m.xz_;\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:112:3: note: Taking false branch\n if ( !stream ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:118:3: note: Loop condition is true. Entering loop body\n while ( getline(stream,line) ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:124:4: note: Taking false branch\n if ( stub_index == std::string::npos ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:127:4: note: Taking false branch\n if ( name_index == std::string::npos ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:146:9: note: Assuming the condition is false\n if ( SV.size() < 12 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:146:4: note: Taking false branch\n if ( SV.size() < 12 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:152:43: note: Calling 'parse_into_stub'\n core::kinematics::Stub to_apply_stub = parse_into_stub( SV );\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:54:7: note: Assuming the condition is false\n if ( in_vec.size() < 12 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:54:2: note: Taking false branch\n if ( in_vec.size() < 12 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:63:3: note: Taking true branch\n if ( count <= 9 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:64:4: note: Taking false branch\n if ( j==4 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:75:2: note: Calling copy assignment operator for 'xyzMatrix'\n to_apply_stub.M = M;\n ^\n/home/benchmark/rosetta/source/cmake/build_clang_tidy/../../src/numeric/xyzMatrix.hh:563:3: note: Taking true branch\n if ( this != &m ) {\n ^\n/home/benchmark/rosetta/source/cmake/build_clang_tidy/../../src/numeric/xyzMatrix.hh:564:21: note: Assigned value is garbage or undefined\n xx_ = m.xx_; xy_ = m.xy_; xz_ = m.xz_;\n ^\n/home/benchmark/rosetta/source/cmake/build_clang_tidy/../../src/numeric/xyzMatrix.hh:564:34: warning: Assigned value is garbage or undefined [clang-analyzer-core.uninitialized.Assign]\n xx_ = m.xx_; xy_ = m.xy_; xz_ = m.xz_;\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:112:3: note: Taking false branch\n if ( !stream ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:118:3: note: Loop condition is true. Entering loop body\n while ( getline(stream,line) ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:124:4: note: Taking false branch\n if ( stub_index == std::string::npos ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:127:4: note: Taking false branch\n if ( name_index == std::string::npos ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:146:9: note: Assuming the condition is false\n if ( SV.size() < 12 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:146:4: note: Taking false branch\n if ( SV.size() < 12 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:152:43: note: Calling 'parse_into_stub'\n core::kinematics::Stub to_apply_stub = parse_into_stub( SV );\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:54:7: note: Assuming the condition is false\n if ( in_vec.size() < 12 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:54:2: note: Taking false branch\n if ( in_vec.size() < 12 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:63:3: note: Taking true branch\n if ( count <= 9 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:64:4: note: Taking false branch\n if ( j==4 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:63:3: note: Taking true branch\n if ( count <= 9 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:64:4: note: Taking false branch\n if ( j==4 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:75:2: note: Calling copy assignment operator for 'xyzMatrix'\n to_apply_stub.M = M;\n ^\n/home/benchmark/rosetta/source/cmake/build_clang_tidy/../../src/numeric/xyzMatrix.hh:563:3: note: Taking true branch\n if ( this != &m ) {\n ^\n/home/benchmark/rosetta/source/cmake/build_clang_tidy/../../src/numeric/xyzMatrix.hh:564:34: note: Assigned value is garbage or undefined\n xx_ = m.xx_; xy_ = m.xy_; xz_ = m.xz_;\n ^\n/home/benchmark/rosetta/source/cmake/build_clang_tidy/../../src/numeric/xyzMatrix.hh:565:8: warning: Assigned value is garbage or undefined [clang-analyzer-core.uninitialized.Assign]\n yx_ = m.yx_; yy_ = m.yy_; yz_ = m.yz_;\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:112:3: note: Taking false branch\n if ( !stream ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:118:3: note: Loop condition is true. Entering loop body\n while ( getline(stream,line) ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:124:4: note: Taking false branch\n if ( stub_index == std::string::npos ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:127:4: note: Taking false branch\n if ( name_index == std::string::npos ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:146:9: note: Assuming the condition is false\n if ( SV.size() < 12 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:146:4: note: Taking false branch\n if ( SV.size() < 12 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:152:43: note: Calling 'parse_into_stub'\n core::kinematics::Stub to_apply_stub = parse_into_stub( SV );\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:54:7: note: Assuming the condition is false\n if ( in_vec.size() < 12 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:54:2: note: Taking false branch\n if ( in_vec.size() < 12 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:63:3: note: Taking true branch\n if ( count <= 9 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:64:4: note: Taking false branch\n if ( j==4 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:63:3: note: Taking true branch\n if ( count <= 9 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:64:4: note: Taking false branch\n if ( j==4 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:63:3: note: Taking true branch\n if ( count <= 9 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:64:4: note: Taking false branch\n if ( j==4 ) {\n ^\n/home/benchmark/rosetta/source/src/apps/public/loop_modeling/transform_loodo.cc:75:2: note: Calling copy assignment operator for 'xyzMatrix'\n to_apply_stub.M = M;\n ^\n/home/benchmark/rosetta/source/cmake/build_clang_tidy/../../src/numeric/xyzMatrix.hh:563:3: note: Taking true branch\n if ( this != &m ) {\n ^\n/home/benchmark/rosetta/source/cmake/build_clang_tidy/../../src/numeric/xyzMatrix.hh:565:8: note: Assigned value is garbage or undefined\n yx_ = m.yx_; yy_ = m.yy_; yz_ = m.yz_;\n ^\n1103 warnings generated.\n", "state": "failed" }, "src/core/scoring/hbonds/hbonds.cc": { "log": "/home/benchmark/rosetta/source/src/core/scoring/hbonds/hbonds.cc:1597:3: warning: Value stored to 'steepness' is never read [clang-analyzer-deadcode.DeadStores]\n steepness = pose.conformation().membrane_info()->membrane_steepness();\n ^\n/home/benchmark/rosetta/source/src/core/scoring/hbonds/hbonds.cc:1597:3: note: Value stored to 'steepness' is never read\n1209 warnings generated.\n", "state": "failed" }, "src/protocols/ptm_prediction/PTMPredictionMetric.cc": { "log": "/home/benchmark/rosetta/source/cmake/build_clang_tidy/../../src/protocols/ptm_prediction/PTMPredictionTensorflowProtocol.hh:56:10: warning: prefer using 'override' or (rarely) 'final' instead of 'virtual' [modernize-use-override]\n virtual ~PTMPredictionTensorflowProtocol();\n ~~~~~~~~^ ~\n override\n/home/benchmark/rosetta/source/cmake/build_clang_tidy/../../src/protocols/ptm_prediction/PTMPredictionTensorflowProtocolBase.hh:63:10: warning: prefer using 'override' or (rarely) 'final' instead of 'virtual' [modernize-use-override]\n virtual ~PTMPredictionTensorflowProtocolBase();\n ~~~~~~~~^ ~\n override\n951 warnings generated.\n", "state": "failed" }, "src/protocols/ptm_prediction/PTMPredictionTensorflowProtocol.cc": { "log": "/home/benchmark/rosetta/source/cmake/build_clang_tidy/../../src/protocols/ptm_prediction/PTMPredictionTensorflowProtocol.hh:56:10: warning: prefer using 'override' or (rarely) 'final' instead of 'virtual' [modernize-use-override]\n virtual ~PTMPredictionTensorflowProtocol();\n ~~~~~~~~^ ~\n override\n/home/benchmark/rosetta/source/cmake/build_clang_tidy/../../src/protocols/ptm_prediction/PTMPredictionTensorflowProtocolBase.hh:63:10: warning: prefer using 'override' or (rarely) 'final' instead of 'virtual' [modernize-use-override]\n virtual ~PTMPredictionTensorflowProtocolBase();\n ~~~~~~~~^ ~\n override\n868 warnings generated.\n", "state": "failed" }, "src/protocols/ptm_prediction/PTMPredictionTensorflowProtocolBase.cc": { "log": "/home/benchmark/rosetta/source/cmake/build_clang_tidy/../../src/protocols/ptm_prediction/PTMPredictionTensorflowProtocolBase.hh:63:10: warning: prefer using 'override' or (rarely) 'final' instead of 'virtual' [modernize-use-override]\n virtual ~PTMPredictionTensorflowProtocolBase();\n ~~~~~~~~^ ~\n override\n303 warnings generated.\n", "state": "failed" } } }