{
"summary": {
"failed": 2,
"failed_tests": [
"ga_ligand_dock_amino_acid",
"energy_based_clustering_alpha_aa_scorefile"
],
"total": 790
},
"tests": {
"AddConstraintsToCurrentConformationMover": {
"log": "",
"state": "passed"
},
"AlignPDBInfoToSequences": {
"log": "",
"state": "passed"
},
"AlterSpecDisruption": {
"log": "",
"state": "passed"
},
"AnchorFinder": {
"log": "",
"state": "passed"
},
"AnchoredDesign": {
"log": "",
"state": "passed"
},
"AnchoredPDBCreator": {
"log": "",
"state": "passed"
},
"BFactorSelector": {
"log": "",
"state": "passed"
},
"BuildPeptide": {
"log": "",
"state": "passed"
},
"CCD_loop_closure": {
"log": "",
"state": "passed"
},
"CCS_PARCS": {
"log": "",
"state": "passed"
},
"ConsensusLoopDesign": {
"log": "",
"state": "passed"
},
"ContactMolecularSurface": {
"log": "",
"state": "passed"
},
"DARC_electrostatics": {
"log": "",
"state": "passed"
},
"DARC_make_ray_files": {
"log": "",
"state": "passed"
},
"DARC_sampling_on_the_fly": {
"log": "",
"state": "passed"
},
"DARC_shapeonly": {
"log": "",
"state": "passed"
},
"DNA_methylation": {
"log": "",
"state": "passed"
},
"DumpTrajectoryEnergy": {
"log": "",
"state": "passed"
},
"DumpTrajectoryEnergy_packing": {
"log": "",
"state": "passed"
},
"Enzrevert_xml": {
"log": "",
"state": "passed"
},
"FavorSequenceProfileMover": {
"log": "",
"state": "passed"
},
"FilterReportAsPoseExtraScoresMover": {
"log": "",
"state": "passed"
},
"FlipChirality": {
"log": "",
"state": "passed"
},
"FloppyTail": {
"log": "",
"state": "passed"
},
"HDXEnergy": {
"log": "",
"state": "passed"
},
"HOW_TO_MAKE_TESTS": {
"log": "",
"state": "passed"
},
"HelixBendFilter": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer_allscores": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer_bothpack": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer_ligand": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer_prepack": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer_resfile": {
"log": "",
"state": "passed"
},
"InterfaceAnalyzer_tracer": {
"log": "",
"state": "passed"
},
"InterfaceDdG": {
"log": "",
"state": "passed"
},
"KIC_refine": {
"log": "",
"state": "passed"
},
"KIC_vicinity": {
"log": "",
"state": "passed"
},
"KIC_with_fragments": {
"log": "",
"state": "passed"
},
"LayerDesign": {
"log": "",
"state": "passed"
},
"LayerDesign_symm": {
"log": "",
"state": "passed"
},
"LayerSelector": {
"log": "",
"state": "passed"
},
"LoopAnalyzer": {
"log": "",
"state": "passed"
},
"LoopLengthChange": {
"log": "",
"state": "passed"
},
"ModifyVariantTypeMover": {
"log": "",
"state": "passed"
},
"MutateResidue_selector": {
"log": "",
"state": "passed"
},
"N-terminal_acetylation": {
"log": "",
"state": "passed"
},
"OversaturatedHbondAcceptorFilter": {
"log": "",
"state": "passed"
},
"PDB_diagnostic": {
"log": "",
"state": "passed"
},
"PTMPrediction": {
"log": "",
"state": "passed"
},
"PeptideCyclizeMover": {
"log": "",
"state": "passed"
},
"PeptideStubMover_prependRepeat": {
"log": "",
"state": "passed"
},
"PolarDesign2019": {
"log": "",
"state": "passed"
},
"ProQ": {
"log": "",
"state": "passed"
},
"RBOut": {
"log": "",
"state": "passed"
},
"ReadResfile_with_selector": {
"log": "",
"state": "passed"
},
"RescorePDDF": {
"log": "",
"state": "passed"
},
"RescoreSAXS": {
"log": "",
"state": "passed"
},
"ResidueDisorder": {
"log": "",
"state": "passed"
},
"RunSimpleMetric_b_factor_test": {
"log": "",
"state": "passed"
},
"SID_ERMS_prediction": {
"log": "",
"state": "passed"
},
"SID_rescore": {
"log": "",
"state": "passed"
},
"SSElementSelector": {
"log": "",
"state": "passed"
},
"SecondaryStructureFilter": {
"log": "",
"state": "passed"
},
"SnugDock": {
"log": "",
"state": "passed"
},
"StrandCurvatureByLevels": {
"log": "",
"state": "passed"
},
"StrandHelixGeometryFilter": {
"log": "",
"state": "passed"
},
"ThreadingInputter": {
"log": "",
"state": "passed"
},
"TryDisulfPermutations": {
"log": "",
"state": "passed"
},
"UBQ_E2_thioester": {
"log": "",
"state": "passed"
},
"UBQ_E2_thioester_extra_bodies": {
"log": "",
"state": "passed"
},
"UBQ_E2_thioester_two_ubiquitins": {
"log": "",
"state": "passed"
},
"UBQ_Gp_CYD-CYD": {
"log": "",
"state": "passed"
},
"UBQ_Gp_LYX-Cterm": {
"log": "",
"state": "passed"
},
"UnsatSelector": {
"log": "",
"state": "passed"
},
"Werror_check": {
"log": "",
"state": "passed"
},
"abinitio": {
"log": "",
"state": "passed"
},
"abinitio_with_trRosetta": {
"log": "",
"state": "passed"
},
"add_constraints_to_current_conformation": {
"log": "",
"state": "passed"
},
"add_helix_sequence_constraints": {
"log": "",
"state": "passed"
},
"add_helix_sequence_constraints_advanced_setup": {
"log": "",
"state": "passed"
},
"add_job_pair_data": {
"log": "",
"state": "passed"
},
"angle_recovery_stats": {
"log": "",
"state": "passed"
},
"antibody_H3": {
"log": "",
"state": "passed"
},
"antibody_H3_camelid": {
"log": "",
"state": "passed"
},
"antibody_cc": {
"log": "",
"state": "passed"
},
"antibody_designer": {
"log": "",
"state": "passed"
},
"antibody_designer_camelid": {
"log": "",
"state": "passed"
},
"antibody_designer_xml": {
"log": "",
"state": "passed"
},
"antibody_graft": {
"log": "",
"state": "passed"
},
"antibody_numbering_converter": {
"log": "",
"state": "passed"
},
"app_exception_handling": {
"log": "",
"state": "passed"
},
"assemble_domains_jd2": {
"log": "",
"state": "passed"
},
"auto-drrafter_final_results": {
"log": "",
"state": "passed"
},
"auto-drrafter_setup_run_R1": {
"log": "",
"state": "passed"
},
"auto-drrafter_setup_run_R2": {
"log": "",
"state": "passed"
},
"auto-drrafter_setup_run_R3": {
"log": "",
"state": "passed"
},
"autoNOE_rosetta": {
"log": "",
"state": "passed"
},
"autosetup_metals_centroid": {
"log": "",
"state": "passed"
},
"backbonegridsampler": {
"log": "",
"state": "passed"
},
"backbonegridsampler_multiresidue": {
"log": "",
"state": "passed"
},
"backbonegridsampler_nstruct_mode": {
"log": "",
"state": "passed"
},
"backrub": {
"log": "",
"state": "passed"
},
"backrub_interface_ddG": {
"log": "",
"state": "passed"
},
"backrub_pilot": {
"log": "",
"state": "passed"
},
"balancedKIC": {
"log": "",
"state": "passed"
},
"basic_gcn_tensorflow_test": {
"log": "",
"state": "passed"
},
"batch_relax": {
"log": "",
"state": "passed"
},
"beta_strand_homodimer": {
"log": "",
"state": "passed"
},
"bin_initialization": {
"log": "",
"state": "passed"
},
"bin_perturbation": {
"log": "",
"state": "passed"
},
"binselector": {
"log": "",
"state": "passed"
},
"binselector_probins": {
"log": "",
"state": "passed"
},
"broker": {
"log": "",
"state": "passed"
},
"broker_membrane": {
"log": "",
"state": "passed"
},
"bundlegridsampler": {
"log": "",
"state": "passed"
},
"bundlegridsampler_composition_energy": {
"log": "",
"state": "passed"
},
"bundlegridsampler_composition_energy_fract_range": {
"log": "",
"state": "passed"
},
"bundlegridsampler_copy_pitch": {
"log": "",
"state": "passed"
},
"bundlegridsampler_design": {
"log": "",
"state": "passed"
},
"bundlegridsampler_design_nstruct_mode": {
"log": "",
"state": "passed"
},
"bundlegridsampler_epsilon": {
"log": "",
"state": "passed"
},
"bundlegridsampler_multirepeat": {
"log": "",
"state": "passed"
},
"bundlegridsampler_z0_offset": {
"log": "",
"state": "passed"
},
"bundlegridsampler_z1_offset": {
"log": "",
"state": "passed"
},
"bundlereporter_filter": {
"log": "",
"state": "passed"
},
"burial_measure_centroid": {
"log": "",
"state": "passed"
},
"buried_area_filter": {
"log": "",
"state": "passed"
},
"buried_unsat_kinemage": {
"log": "",
"state": "passed"
},
"buried_unsat_voids_hbnet_design": {
"log": "",
"state": "passed"
},
"buried_unsat_voids_hbnet_design_symm": {
"log": "",
"state": "passed"
},
"c-term_conjugation": {
"log": "",
"state": "passed"
},
"calculate_sasa": {
"log": "",
"state": "passed"
},
"carbohydrates": {
"log": "",
"state": "passed"
},
"cart_min_glycans": {
"log": "",
"state": "passed"
},
"cartesianddg": {
"log": "",
"state": "passed"
},
"case_sensitive_filenames": {
"log": "",
"state": "passed"
},
"ccd_ends_graft_mover_rs": {
"log": "",
"state": "passed"
},
"central_class_modification": {
"log": "",
"state": "passed"
},
"centroid_disulfide_scores": {
"log": "",
"state": "passed"
},
"centroid_from_fullatom": {
"log": "",
"state": "passed"
},
"cl_complex_rescore": {
"log": "",
"state": "passed"
},
"classic_relax_1a19": {
"log": "",
"state": "passed"
},
"cleanAlignment": {
"log": "",
"state": "passed"
},
"cluster": {
"log": "",
"state": "passed"
},
"cluster_alns": {
"log": "",
"state": "passed"
},
"cluster_calibur": {
"log": "",
"state": "passed"
},
"cluster_filter": {
"log": "",
"state": "passed"
},
"cmaes_minimizer": {
"log": "",
"state": "passed"
},
"coarse_rna_scoring": {
"log": "",
"state": "passed"
},
"code_template_tests_app": {
"log": "",
"state": "passed"
},
"code_template_tests_citations": {
"log": "",
"state": "passed"
},
"code_template_tests_src": {
"log": "",
"state": "passed"
},
"code_template_tests_unit": {
"log": "",
"state": "passed"
},
"coenzymes": {
"log": "",
"state": "passed"
},
"combine_silent": {
"log": "",
"state": "passed"
},
"composition_energy_layers": {
"log": "",
"state": "passed"
},
"constel": {
"log": "",
"state": "passed"
},
"constraints_metric": {
"log": "",
"state": "passed"
},
"contactMap": {
"log": "",
"state": "passed"
},
"control_flow_rs": {
"log": "",
"state": "passed"
},
"copy_rotamer_mover": {
"log": "",
"state": "passed"
},
"count_cycpep_sequences": {
"log": "",
"state": "passed"
},
"coupled_moves": {
"log": "",
"state": "passed"
},
"crankshaft_flip": {
"log": "",
"state": "passed"
},
"create_clash-based_repack_shell": {
"log": "",
"state": "passed"
},
"create_sequence_motif": {
"log": "",
"state": "passed"
},
"crossaln": {
"log": "",
"state": "passed"
},
"crosslinkermover_1_4_bbmb_asymm": {
"log": "",
"state": "passed"
},
"crosslinkermover_1_4_bbmb_c2_symmetry": {
"log": "",
"state": "passed"
},
"crosslinkermover_1_4_bbmb_s2_symm": {
"log": "",
"state": "passed"
},
"crosslinkermover_octahedral": {
"log": "",
"state": "passed"
},
"crosslinkermover_octahedral_s2_symm": {
"log": "",
"state": "passed"
},
"crosslinkermover_square_planar": {
"log": "",
"state": "passed"
},
"crosslinkermover_square_planar_d2_symm": {
"log": "",
"state": "passed"
},
"crosslinkermover_square_pyramidal": {
"log": "",
"state": "passed"
},
"crosslinkermover_tetrahedral_metal": {
"log": "",
"state": "passed"
},
"crosslinkermover_tetrahedral_metal_asp": {
"log": "",
"state": "passed"
},
"crosslinkermover_tetrahedral_metal_c2_symmetry": {
"log": "",
"state": "passed"
},
"crosslinkermover_tetrahedral_metal_d2_symmetry": {
"log": "",
"state": "passed"
},
"crosslinkermover_thioether": {
"log": "",
"state": "passed"
},
"crosslinkermover_tma": {
"log": "",
"state": "passed"
},
"crosslinkermover_tma_symm": {
"log": "",
"state": "passed"
},
"crosslinkermover_trigonal_planar": {
"log": "",
"state": "passed"
},
"crosslinkermover_trigonal_planar_c3_symm": {
"log": "",
"state": "passed"
},
"crosslinkermover_trigonal_pyramidal": {
"log": "",
"state": "passed"
},
"crosslinkermover_trigonal_pyramidal_c3_symm": {
"log": "",
"state": "passed"
},
"cs_rosetta_rna": {
"log": "",
"state": "passed"
},
"cst_info": {
"log": "",
"state": "passed"
},
"cstfile_to_theozyme_pdb": {
"log": "",
"state": "passed"
},
"custom_basetype_packer_palette": {
"log": "",
"state": "passed"
},
"cyclization": {
"log": "",
"state": "passed"
},
"cycpep_design_pipeline": {
"log": "",
"state": "passed"
},
"cycpep_rdkit_metric": {
"log": "",
"state": "passed"
},
"cycpep_rigid_body_permutation_mover": {
"log": "",
"state": "passed"
},
"cycpep_symmetry_filter": {
"log": "",
"state": "passed"
},
"d_workflow": {
"log": "",
"state": "passed"
},
"database_jd2_compact_io": {
"log": "",
"state": "passed"
},
"database_jd2_io": {
"log": "",
"state": "passed"
},
"database_md5": {
"log": "",
"state": "passed"
},
"database_session_resource": {
"log": "",
"state": "passed"
},
"ddG_ensemble": {
"log": "",
"state": "passed"
},
"ddG_of_mutation": {
"log": "",
"state": "passed"
},
"ddG_scan": {
"log": "",
"state": "passed"
},
"ddG_sym": {
"log": "",
"state": "passed"
},
"density_denovo": {
"log": "",
"state": "passed"
},
"density_refine": {
"log": "",
"state": "passed"
},
"density_refine_symm": {
"log": "",
"state": "passed"
},
"density_tools": {
"log": "",
"state": "passed"
},
"design_glycans": {
"log": "",
"state": "passed"
},
"design_w_custom_palette-CAAs": {
"log": "",
"state": "passed"
},
"design_w_custom_palette-NCAAs": {
"log": "",
"state": "passed"
},
"design_w_custom_palette-RNA": {
"log": "",
"state": "passed"
},
"dgdp_aio": {
"log": "",
"state": "passed"
},
"dgdp_script": {
"log": "",
"state": "passed"
},
"distances": {
"log": "",
"state": "passed"
},
"disulfidize_beta_cys": {
"log": "",
"state": "passed"
},
"dna_interface_design": {
"log": "",
"state": "passed"
},
"dock_glycans": {
"log": "",
"state": "passed"
},
"dock_with_hotspot_place_simultaneously": {
"log": "",
"state": "passed"
},
"docking_distance_constraints": {
"log": "",
"state": "passed"
},
"docking_ensemble": {
"log": "",
"state": "passed"
},
"docking_ensemble_prepack": {
"log": "",
"state": "passed"
},
"docking_full_protocol": {
"log": "",
"state": "passed"
},
"docking_local_refine": {
"log": "",
"state": "passed"
},
"docking_local_refine_min": {
"log": "",
"state": "passed"
},
"docking_low_res": {
"log": "",
"state": "passed"
},
"docking_prepack": {
"log": "",
"state": "passed"
},
"docking_site_constraints": {
"log": "",
"state": "passed"
},
"doug_dock_design_min_mod2_cal_cal": {
"log": "",
"state": "passed"
},
"drrafter_error_estimation": {
"log": "",
"state": "passed"
},
"drrafter_run": {
"log": "",
"state": "passed"
},
"drrafter_setup": {
"log": "",
"state": "passed"
},
"drrafter_setup_build_missing": {
"log": "",
"state": "passed"
},
"drrafter_setup_protein_dock": {
"log": "",
"state": "passed"
},
"drrafter_setup_real_test_H": {
"log": "",
"state": "passed"
},
"drrafter_setup_real_test_H_no_init": {
"log": "",
"state": "passed"
},
"drrafter_setup_ribosome_test": {
"log": "",
"state": "passed"
},
"drrafter_setup_simple": {
"log": "",
"state": "passed"
},
"duplicate_header_guards": {
"log": "",
"state": "passed"
},
"energy_based_clustering_alpha_aa": {
"log": "",
"state": "passed"
},
"energy_based_clustering_alpha_aa_bin_analysis": {
"log": "",
"state": "passed"
},
"energy_based_clustering_alpha_aa_dihedral": {
"log": "",
"state": "passed"
},
"energy_based_clustering_alpha_aa_scorefile": {
"log": "",
"state": "script failed"
},
"entropy_correction": {
"log": "",
"state": "passed"
},
"enumerative_sampling": {
"log": "",
"state": "passed"
},
"enzdes": {
"log": "",
"state": "passed"
},
"enzscore_filter_dimetal": {
"log": "",
"state": "passed"
},
"enzscore_filter_dimetal_sym": {
"log": "",
"state": "passed"
},
"enzscore_filter_ligand": {
"log": "",
"state": "passed"
},
"enzscore_filter_metal": {
"log": "",
"state": "passed"
},
"enzscore_filter_metal_sym": {
"log": "",
"state": "passed"
},
"erraser_minimize": {
"log": "",
"state": "passed"
},
"esm_model_perplexity": {
"log": "",
"state": "passed"
},
"evolution": {
"log": "",
"state": "passed"
},
"exclusively_shared_jumps": {
"log": "",
"state": "passed"
},
"explicit_membrane": {
"log": "",
"state": "passed"
},
"extract_atomtree_diffs": {
"log": "",
"state": "passed"
},
"extract_pdbs": {
"log": "",
"state": "passed"
},
"farfar_mrna": {
"log": "",
"state": "passed"
},
"farnesyl": {
"log": "",
"state": "passed"
},
"fast_relax": {
"log": "",
"state": "passed"
},
"fast_relax_scripts": {
"log": "",
"state": "passed"
},
"favor_coupling_tensor": {
"log": "",
"state": "passed"
},
"favor_native_residue": {
"log": "",
"state": "passed"
},
"features": {
"log": "",
"state": "passed"
},
"features_database_schema": {
"log": "",
"state": "passed"
},
"features_parallel": {
"log": "",
"state": "passed"
},
"features_pdb": {
"log": "",
"state": "passed"
},
"features_pdb_mpi": {
"log": "",
"state": "passed"
},
"features_postgres": {
"log": "",
"state": "passed"
},
"features_scientific_benchmark": {
"log": "",
"state": "passed"
},
"fiber_diffraction": {
"log": "",
"state": "passed"
},
"fiber_diffraction_fad": {
"log": "",
"state": "passed"
},
"fit_helixparams": {
"log": "",
"state": "passed"
},
"fit_helixparams_a3b": {
"log": "",
"state": "passed"
},
"fit_helixparams_rms": {
"log": "",
"state": "passed"
},
"fix_alignment_to_match_pdb": {
"log": "",
"state": "passed"
},
"fixbb": {
"log": "",
"state": "passed"
},
"flexpepdock": {
"log": "",
"state": "passed"
},
"flexpepdock_abinitio": {
"log": "",
"state": "passed"
},
"fold_and_dock": {
"log": "",
"state": "passed"
},
"fold_cst_new": {
"log": "",
"state": "passed"
},
"fold_from_loops": {
"log": "",
"state": "passed"
},
"fragment_picker": {
"log": "",
"state": "passed"
},
"fragmentpicker_integration_demo": {
"log": "",
"state": "passed"
},
"fuzzy": {
"log": "",
"state": "passed"
},
"ga_ligand_dock": {
"log": "",
"state": "passed"
},
"ga_ligand_dock_amino_acid": {
"log": "\n\nLogFile log\ncore.init.score_function_corrections: [ WARNING ] Flag -beta_nov16 is set but either -weights are also specified or this is being used with the genpot score function. Not changing input weights file!\ncore.init: command: ROSETTA/source/bin/rosetta_scripts.default.linuxgccubsan -in:path:database_cache_dir ROSETTA/.database-binaries/ubuntugccubsan @flags -database ROSETTA/database -testing:INTEGRATION_TEST -parser:script_vars SAMPLE_RING_CONFORMERS=false\nbasic.random.init_random_generator: Constant seed mode, seed=1111111 seed_offset=0 real_seed=1111111\nbasic.random.init_random_generator: RandomGenerator:init: Normal mode, seed=1111111 RG_type=mt19937\nprotocols.jd2.PDBJobInputter: Instantiate PDBJobInputter\nprotocols.jd2.PDBJobInputter: PDBJobInputter::fill_jobs\nprotocols.jd2.PDBJobInputter: pushed inputs/holo.pdb nstruct index 1\nprotocols.evaluation.ChiWellRmsdEvaluatorCreator: Evaluation Creator active ... \nprotocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job\nprotocols.jd2.PDBJobInputter: filling pose from PDB inputs/holo.pdb\ncore.import_pose.import_pose: File 'inputs/holo.pdb' automatically determined to be of type PDB\ncore.io.util: Found 0 glycan linkages in the structure based on atomic distances\ncore.io.util: Automatic glycan connection is activated.\ncore.io.util: Start reordering residues.\ncore.io.util: Corrected glycan residue order (internal numbering): []\ncore.io.util: \ncore.io.util: Found 0 glycan linkages in the structure based on atomic distances\nprotocols.rosetta_scripts.RosettaScriptsParser: dock_design_filename=ga_ligdock.xml\nprotocols.rosetta_scripts.RosettaScriptsParser: Variable substitution will occur with the following values: '%%SAMPLE_RING_CONFORMERS%%'='false'; \nprotocols.rosetta_scripts.RosettaScriptsParser: Substituted script:\n<ROSETTASCRIPTS>\n <SCOREFXNS>\n <ScoreFunction name=\"dockscore\" weights=\"beta_cart\">\n <Reweight scoretype=\"fa_rep\" weight=\"0.2\"/>\n </ScoreFunction>\n <ScoreFunction name=\"relaxscore\" weights=\"beta_cart\"/>\n </SCOREFXNS>\n\n <TASKOPERATIONS>\n </TASKOPERATIONS>\n\n <FILTERS>\n </FILTERS>\n\n <RESIDUE_SELECTORS>\n <Index name=\"select_phe\" resnums=\"132\" />\n </RESIDUE_SELECTORS>\n\n <MOVERS>\n <ModifyVariantType name=\"add_ACE\" add_type=\"N_ACETYLATION\" residue_selector=\"select_phe\" />\n <ModifyVariantType name=\"add_NME\" add_type=\"C_METHYLAMIDATION\" residue_selector=\"select_phe\" />\n <GALigandDock name=\"dock\" scorefxn=\"dockscore\" scorefxn_relax=\"relaxscore\" runmode=\"dockflex\" sample_ring_conformers=\"false\" final_exact_minimize=\"none\" >\n <Stage repeats=\"4\" npool=\"4\" pmut=\"0.2\" smoothing=\"0.375\" rmsdthreshold=\"1.5\" maxiter=\"50\" pack_cycles=\"100\" ramp_schedule=\"0.1,1.0\"/>\n </GALigandDock>\n </MOVERS>\n\n <PROTOCOLS>\n <Add mover=\"add_ACE\"/>\n <Add mover=\"add_NME\"/>\n <Add mover=\"dock\"/>\n </PROTOCOLS>\n <OUTPUT scorefxn=\"relaxscore\"/>\n</ROSETTASCRIPTS>\nprotocols.rosetta_scripts.RosettaScriptsParser: Validating input script...\nprotocols.rosetta_scripts.RosettaScriptsSchemaValidator: Generating XML Schema for rosetta_scripts...\nprotocols.rosetta_scripts.RosettaScriptsSchemaValidator: ...done\nprotocols.rosetta_scripts.RosettaScriptsSchemaValidator: Initializing schema validator...\nprotocols.rosetta_scripts.RosettaScriptsSchemaValidator: ...done\nprotocols.rosetta_scripts.RosettaScriptsParser: ...done\nprotocols.rosetta_scripts.RosettaScriptsParser: Parsed script:\n<ROSETTASCRIPTS>\n\t<SCOREFXNS>\n\t\t<ScoreFunction name=\"dockscore\" weights=\"beta_cart\">\n\t\t\t<Reweight scoretype=\"fa_rep\" weight=\"0.2\"/>\n\t\t</ScoreFunction>\n\t\t<ScoreFunction name=\"relaxscore\" weights=\"beta_cart\"/>\n\t</SCOREFXNS>\n\t<TASKOPERATIONS/>\n\t<FILTERS/>\n\t<RESIDUE_SELECTORS>\n\t\t<Index name=\"select_phe\" resnums=\"132\"/>\n\t</RESIDUE_SELECTORS>\n\t<MOVERS>\n\t\t<ModifyVariantType add_type=\"N_ACETYLATION\" name=\"add_ACE\" residue_selector=\"select_phe\"/>\n\t\t<ModifyVariantType add_type=\"C_METHYLAMIDATION\" name=\"add_NME\" residue_selector=\"select_phe\"/>\n\t\t<GALigandDock final_exact_minimize=\"none\" name=\"dock\" runmode=\"dockflex\" sample_ring_conformers=\"false\" scorefxn=\"dockscore\" scorefxn_relax=\"relaxscore\">\n\t\t\t<Stage maxiter=\"50\" npool=\"4\" pack_cycles=\"100\" pmut=\"0.2\" ramp_schedule=\"0.1,1.0\" repeats=\"4\" rmsdthreshold=\"1.5\" smoothing=\"0.375\"/>\n\t\t</GALigandDock>\n\t</MOVERS>\n\t<PROTOCOLS>\n\t\t<Add mover=\"add_ACE\"/>\n\t\t<Add mover=\"add_NME\"/>\n\t\t<Add mover=\"dock\"/>\n\t</PROTOCOLS>\n\t<OUTPUT scorefxn=\"relaxscore\"/>\n</ROSETTASCRIPTS>\ncore.scoring.ScoreFunctionFactory: SCOREFUNCTION: beta_genpot.wts\ncore.scoring.etable: Starting energy table calculation\ncore.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well\ncore.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6)\ncore.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6)\ncore.scoring.etable: Finished calculating energy tables.\nbasic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBPoly1D.csv\nbasic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBFadeIntervals.csv\nbasic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBEval.csv\nbasic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/DonStrength.csv\nbasic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/AccStrength.csv\nbasic.io.database: Database file opened: scoring/score_functions/rama/fd_beta_nov2016/all.ramaProb\nbasic.io.database: Database file opened: scoring/score_functions/rama/fd_beta_nov2016/prepro.ramaProb\nbasic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.all.txt\nbasic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.gly.txt\nbasic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.pro.txt\nbasic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.valile.txt\nbasic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA\nbasic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_n\ncore.scoring.P_AA: shapovalov_lib::shap_p_aa_pp_smooth_level of 1( aka low_smooth ) got activated.\nbasic.io.database: Database file opened: scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa131/a20.prop\nbasic.io.database: Database file opened: scoring/score_functions/bondlength_bondangle/hydroxyl_torsion_preference.txt\nbasic.io.database: Database file opened: scoring/score_functions/generic_potential/generic_bonded.round6p.txt\ncore.scoring.GenericBondedPotential: Added total 0 bond parameters corresponding to 0 unique bonds.\ncore.scoring.GenericBondedPotential: Added total 0 angle parameters corresponding to 0 unique angles.\ncore.scoring.GenericBondedPotential: Added total 264 torsion parameters corresponding to 1124576 unique torsions.\ncore.scoring.GenericBondedPotential: Added total 50 improper parameters corresponding to 437 unique impropers.\ncore.scoring.ScoreFunctionFactory: The -include_sugars flag was used with no sugar_bb weight set in the weights file. Setting sugar_bb weight to 0.5 by default.\ncore.scoring.ScoringManager: Creating CHI Energy Function.\ncore.scoring.carbohydrates.CHIEnergyFunction: Setting up chi sampling\ncore.scoring.ScoringManager: Creating carbohydrate omega preferences function.\ncore.scoring.carbohydrates.OmegaPreferencesFunction: Setting up omega preference sampling\ncore.scoring.etable: Starting energy table calculation\ncore.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well\ncore.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6)\ncore.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6)\ncore.scoring.etable: Finished calculating energy tables.\nbasic.io.database: Database file opened: scoring/score_functions/PairEPotential/pdb_pair_stats_fine\nbasic.io.database: Database file opened: scoring/score_functions/InterchainPotential/interchain_env_log.txt\nbasic.io.database: Database file opened: scoring/score_functions/InterchainPotential/interchain_pair_log.txt\nbasic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt\nbasic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt\nbasic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt\nbasic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt\ncore.scoring.ramachandran: shapovalov_lib::shap_rama_smooth_level of 4( aka highest_smooth ) got activated.\nbasic.io.database: Database file opened: scoring/score_functions/rama/shapovalov/kappa25/all.ramaProb\ncore.energy_methods.CartesianBondedEnergy: Initializing IdealParametersDatabase with default Ks=300 , 80 , 80 , 10 , 80\nbasic.io.database: Database file opened: scoring/score_functions/bondlength_bondangle/default-lengths.txt\ncore.energy_methods.CartesianBondedEnergy: Read 759 bb-independent lengths.\nbasic.io.database: Database file opened: scoring/score_functions/bondlength_bondangle/default-angles.txt\ncore.energy_methods.CartesianBondedEnergy: Read 1434 bb-independent angles.\nbasic.io.database: Database file opened: scoring/score_functions/bondlength_bondangle/default-torsions.txt\ncore.energy_methods.CartesianBondedEnergy: Read 1 bb-independent torsions.\nbasic.io.database: Database file opened: scoring/score_functions/bondlength_bondangle/default-improper.txt\ncore.energy_methods.CartesianBondedEnergy: Read 529 bb-independent improper tors.\nprotocols.jd2.parser.ScoreFunctionLoader: defined score function \"dockscore\" with weights \"beta_cart\"\nprotocols.jd2.parser.ScoreFunctionLoader: setting dockscore weight fa_rep to 0.2\nprotocols.jd2.parser.ScoreFunctionLoader: defined score function \"relaxscore\" with weights \"beta_cart\"\nprotocols.rosetta_scripts.RosettaScriptsParser: Defined mover named \"add_ACE\" of type ModifyVariantType\nprotocols.rosetta_scripts.RosettaScriptsParser: Defined mover named \"add_NME\" of type ModifyVariantType\ncore.scoring.ScoreFunctionFactory: SCOREFUNCTION: beta_genpot.wts\ncore.scoring.ScoreFunctionFactory: The -include_sugars flag was used with no sugar_bb weight set in the weights file. Setting sugar_bb weight to 0.5 by default.\ncore.scoring.ScoreFunctionFactory: SCOREFUNCTION: beta_genpot.wts\ncore.scoring.ScoreFunctionFactory: The -include_sugars flag was used with no sugar_bb weight set in the weights file. Setting sugar_bb weight to 0.5 by default.\nprotocols.ligand_docking.GALigandDock.GALigandDock: Using custom 1-stage protocol.\nprotocols.rosetta_scripts.RosettaScriptsParser: Defined mover named \"dock\" of type GALigandDock\nprotocols.rosetta_scripts.ParsedProtocol: ParsedProtocol mover with the following settings\nprotocols.rosetta_scripts.ParsedProtocol: Added mover \"add_ACE\"\nprotocols.rosetta_scripts.ParsedProtocol: Added mover \"add_NME\"\nprotocols.rosetta_scripts.ParsedProtocol: Added mover \"dock\"\nprotocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job\nprotocols.jd2.PDBJobInputter: filling pose from saved copy inputs/holo.pdb\nprotocols.rosetta_scripts.ParsedProtocol: =======================BEGIN MOVER ModifyVariantType - add_ACE=======================\nprotocols.rosetta_scripts.ParsedProtocol: =======================BEGIN MOVER ModifyVariantType - add_NME=======================\nprotocols.rosetta_scripts.ParsedProtocol: =======================BEGIN MOVER GALigandDock - dock=======================\ncore.scoring.electron_density.ElectronDensity: Loading Density Map\ncore.scoring.electron_density.ElectronDensity: [ WARNING ] No density map specified\nprotocols.ligand_docking.GALigandDock.GALigandDock: Preparing grid using input pose \nprotocols.ligand_docking.GALigandDock.GridScorer: ... built grid with 6 + 4 A radius; 0.25 A grid spacing\nprotocols.ligand_docking.GALigandDock.GridScorer: Initial dimension: 80 x 80 x 80\nprotocols.ligand_docking.GALigandDock.GridScorer: Initial origin = ( 29.9706,-8.90209,-6.97469 )\nprotocols.ligand_docking.GALigandDock.GALigandDock: Detect flexible sidechains with mode: aniso, edge_buffer = 0\nprotocols.ligand_docking.GALigandDock.GALigandDock: idx: 0,1,2\nprotocols.ligand_docking.GALigandDock.GALigandDock: eigenvals = [ 1,0.347865,0.123475 ]\nprotocols.ligand_docking.GALigandDock.GridScorer: Received 1 residues for grid calculation: PHE:NtermTruncation:CtermTruncation:N_acetylated:C_methylamidated\nprotocols.ligand_docking.GALigandDock.GALigandDock: Build grid for 1 ligand residues and for 0 sidechain residues\nprotocols.ligand_docking.GALigandDock.GALigandDock: Mobile sidechains: 132\ncore.energy_methods.CartesianBondedEnergy: Creating new peptide-bonded energy container (132)\ncore.energy_methods.GenericBondedEnergy: Creating new peptide-bonded energy container (132)\nbasic.io.database: Database file opened: scoring/score_functions/elec_cp_reps.dat\ncore.scoring.elec.util: Read 40 countpair representative atoms\ncore.pack.dunbrack.RotamerLibrary: shapovalov_lib_fixes_enable option is true.\ncore.energy_methods.CartesianBondedEnergy: Adding undefined angle PHE: CA,N,CP to DB with theta0 = 2.02807 , Ktheta = 80\ncore.energy_methods.CartesianBondedEnergy: Adding undefined angle PHE: CP,N,H to DB with theta0 = 2.17555 , Ktheta = 80\ncore.energy_methods.CartesianBondedEnergy: Adding undefined angle PHE: CA,C,NR to DB with theta0 = 2.02807 , Ktheta = 80\ncore.energy_methods.CartesianBondedEnergy: Adding undefined angle PHE: O,C,NR to DB with theta0 = 2.16072 , Ktheta = 80\ncore.energy_methods.CartesianBondedEnergy: Adding undefined angle PHE: N,CP,CQ to DB with theta0 = 2.07467 , Ktheta = 80\ncore.energy_methods.CartesianBondedEnergy: Adding undefined angle PHE: N,CP,OCP to DB with theta0 = 2.07363 , Ktheta = 80\ncore.energy_methods.CartesianBondedEnergy: Adding undefined angle PHE: CQ,CP,OCP to DB with theta0 = 2.13489 , Ktheta = 80\ncore.energy_methods.CartesianBondedEnergy: Adding undefined angle PHE: C,NR,CS to DB with theta0 = 2.12407 , Ktheta = 80\ncore.energy_methods.CartesianBondedEnergy: Adding undefined angle PHE: C,NR,HR to DB with theta0 = 2.07956 , Ktheta = 80\ncore.energy_methods.CartesianBondedEnergy: Adding undefined angle PHE: CS,NR,HR to DB with theta0 = 2.07956 , Ktheta = 80\ncore.energy_methods.CartesianBondedEnergy: Adding undefined length PHE: N,CP, to DB with d0 = 1.32869 , Kd = 300\ncore.energy_methods.CartesianBondedEnergy: Adding undefined length PHE: C,NR, to DB with d0 = 1.32869 , Kd = 300\ncore.energy_methods.CartesianBondedEnergy: Adding undefined length PHE: CP,CQ, to DB with d0 = 1.511 , Kd = 300\ncore.energy_methods.CartesianBondedEnergy: Adding undefined length PHE: CP,OCP, to DB with d0 = 1.23 , Kd = 300\ncore.energy_methods.CartesianBondedEnergy: Adding undefined length PHE: NR,CS, to DB with d0 = 1.458 , Kd = 300\ncore.energy_methods.CartesianBondedEnergy: Adding undefined length PHE: NR,HR, to DB with d0 = 1.01 , Kd = 300\nprotocols.ligand_docking.GALigandDock.GridScorer: Building 80 x 80 x 80 grid; origin = ( 29.9706,-8.90209,-6.97469 )\nprotocols.ligand_docking.GALigandDock.GridScorer: maxdis = 7.51668\nprotocols.ligand_docking.GALigandDock.GridScorer: subhash_buffer = 0.433013\nprotocols.ligand_docking.GALigandDock.GridScorer: hash_grid = 8\nprotocols.ligand_docking.GALigandDock.GridScorer: Calculating gridded energies for 15 unique atom types\nprotocols.ligand_docking.GALigandDock.GridScorer: and lkb virtual parameters for 4 unique polar atom types\ncore.energy_methods.CartesianBonsrc/protocols/ligand_docking/GALigandDock/LigandAligner.hh:335:7: runtime error: load of value 132, which is not a valid value for type 'bool'\n #0 0x7fd83534e84d in protocols::ligand_docking::ga_ligand_dock::LigandAligner::operator=(protocols::ligand_docking::ga_ligand_dock::LigandAligner&&) src/protocols/ligand_docking/GALigandDock/LigandAligner.hh:335\n #1 0x7fd83534e84d in protocols::ligand_docking::ga_ligand_dock::GALigandDock::apply(core::pose::Pose&) src/protocols/ligand_docking/GALigandDock/GALigandDock.cc:528\n #2 0x7fd84c9b8849 in protocols::rosetta_scripts::ParsedProtocol::apply_mover(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&) src/protocols/rosetta_scripts/ParsedProtocol.cc:686\n #3 0x7fd84c9b9372 in protocols::rosetta_scripts::ParsedProtocol::apply_step(core::pose::Pose&, protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const&, bool) src/protocols/rosetta_scripts/ParsedProtocol.cc:647\n #4 0x7fd84c9baa51 in protocols::rosetta_scripts::ParsedProtocol::sequence_protocol(core::pose::Pose&, __gnu_cxx::__normal_iterator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep const*, std::vector<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep, std::allocator<protocols::rosetta_scripts::ParsedProtocol::ParsedProtocolStep> > >) src/protocols/rosetta_scripts/ParsedProtocol.cc:798\n #5 0x7fd84c9bbe1d in protocols::rosetta_scripts::ParsedProtocol::apply(core::pose::Pose&) src/protocols/rosetta_scripts/ParsedProtocol.cc:190\n #6 0x7fd84be3a16a in protocols::jd2::JobDistributor::run_one_job(std::shared_ptr<protocols::moves::Mover>&, long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned long&, unsigned long&, bool) src/protocols/jd2/JobDistributor.cc:723\n #7 0x7fd84be3d0ce in protocols::jd2::JobDistributor::go_main(std::shared_ptr<protocols::moves::Mover>) src/protocols/jd2/JobDistributor.cc:302\n #8 0x7fd84bdeee36 in protocols::jd2::FileSystemJobDistributor::go(std::shared_ptr<protocols::moves::Mover>) src/protocols/jd2/FileSystemJobDistributor.cc:225\n #9 0x5630b2f6013a in main src/apps/public/rosetta_scripts/rosetta_scripts.cc:110\n #10 0x7fd84666abf6 in __libc_start_main (/lib/x86_64-linux-gnu/libc.so.6+0x21bf6)\n #11 0x5630b2f5e2f9 in _start (ROSETTA/source/build/src/ubsan/linux/3.10/64/x86/gcc/7/default/rosetta_scripts.default.linuxgccubsan+0xc2f9)\n\n",
"state": "script failed"
},
"ga_ligand_dock_macrocycle": {
"log": "",
"state": "passed"
},
"gen_apo_grids": {
"log": "",
"state": "passed"
},
"gen_lig_grids": {
"log": "",
"state": "passed"
},
"generate_6Dloopclose": {
"log": "",
"state": "passed"
},
"genkic_bin_perturbing": {
"log": "",
"state": "passed"
},
"genkic_bin_sampling": {
"log": "",
"state": "passed"
},
"genkic_bin_setting": {
"log": "",
"state": "passed"
},
"genkic_dihedral_copying": {
"log": "",
"state": "passed"
},
"genkic_lowmemory_mode": {
"log": "",
"state": "passed"
},
"genkic_rama_filter": {
"log": "",
"state": "passed"
},
"genkic_ramaprepro_sampling": {
"log": "",
"state": "passed"
},
"genkic_sugars": {
"log": "",
"state": "passed"
},
"geometric_solvation": {
"log": "",
"state": "passed"
},
"glycan_anomers": {
"log": "",
"state": "passed"
},
"glycan_clash_check": {
"log": "",
"state": "passed"
},
"glycan_refinment": {
"log": "",
"state": "passed"
},
"glycan_relax": {
"log": "",
"state": "passed"
},
"glycan_sequon_scanner": {
"log": "",
"state": "passed"
},
"glycan_tree_relax": {
"log": "",
"state": "passed"
},
"glycomutagenesis": {
"log": "",
"state": "passed"
},
"glycopeptidedocking": {
"log": "",
"state": "passed"
},
"glycopeptidedocking_diglyco_long": {
"log": "",
"state": "passed"
},
"glycosylation": {
"log": "",
"state": "passed"
},
"grid_scores_features": {
"log": "",
"state": "passed"
},
"hbnet": {
"log": "",
"state": "passed"
},
"hbnet_asymm": {
"log": "",
"state": "passed"
},
"hbnet_energy": {
"log": "",
"state": "passed"
},
"hbnet_energy_rosettascripts_linear": {
"log": "",
"state": "passed"
},
"hbnet_energy_symm": {
"log": "",
"state": "passed"
},
"hbnet_use_input_rot": {
"log": "",
"state": "passed"
},
"hbonds": {
"log": "",
"state": "passed"
},
"hbonds_sp2": {
"log": "",
"state": "passed"
},
"hbondstoresidue_selector": {
"log": "",
"state": "passed"
},
"hbs_design": {
"log": "",
"state": "passed"
},
"header_using_check": {
"log": "",
"state": "passed"
},
"helical_bundle": {
"log": "",
"state": "passed"
},
"helical_bundle_nonideal": {
"log": "",
"state": "passed"
},
"helical_bundle_predict": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_psipred": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_psipred_with_helix_globals": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_sequence": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_skipping_residues": {
"log": "",
"state": "passed"
},
"helix_from_sequence": {
"log": "",
"state": "passed"
},
"hierarchical_clustering": {
"log": "",
"state": "passed"
},
"homodimer_fnd_ref2015_memb": {
"log": "",
"state": "passed"
},
"hotspot_graft": {
"log": "",
"state": "passed"
},
"hotspot_hashing": {
"log": "",
"state": "passed"
},
"hotspot_stub_constraints": {
"log": "",
"state": "passed"
},
"hshash_utils": {
"log": "",
"state": "passed"
},
"hts_io": {
"log": "",
"state": "passed"
},
"hybridization": {
"log": "",
"state": "passed"
},
"hydrate": {
"log": "",
"state": "passed"
},
"hydrate_relax": {
"log": "",
"state": "passed"
},
"identify_cdr_clusters": {
"log": "",
"state": "passed"
},
"ig_dump": {
"log": "",
"state": "passed"
},
"include_cc_check": {
"log": "",
"state": "passed"
},
"interaction_graph_summary_metric": {
"log": "",
"state": "passed"
},
"interface_energy": {
"log": "",
"state": "passed"
},
"inv_kin_lig_loop_design": {
"log": "",
"state": "passed"
},
"iphold": {
"log": "",
"state": "passed"
},
"jd2test_PDBIO": {
"log": "",
"state": "passed"
},
"jd2test_PDBin_mmCIFout": {
"log": "",
"state": "passed"
},
"jd2test_PDBin_mmCIFout_extra_data_separate": {
"log": "",
"state": "passed"
},
"jd2test_mmCIFIO": {
"log": "",
"state": "passed"
},
"jd2test_mmCIFin_PDBout": {
"log": "",
"state": "passed"
},
"job_definition_script_vars": {
"log": "",
"state": "passed"
},
"jrelax": {
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},
"jscore": {
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},
"kinemage_grid_output": {
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},
"kinematic_looprelax": {
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},
"ld_converter": {
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},
"ligand_database_io": {
"log": "",
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},
"ligand_dock_7cpa": {
"log": "",
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},
"ligand_dock_cholesterol": {
"log": "",
"state": "passed"
},
"ligand_dock_ensemble": {
"log": "",
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},
"ligand_dock_grid": {
"log": "",
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},
"ligand_dock_script": {
"log": "",
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},
"ligand_motif_design": {
"log": "",
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},
"ligand_motif_discovery": {
"log": "",
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},
"ligand_motif_identification": {
"log": "",
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},
"ligand_water_docking": {
"log": "",
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},
"longest_continuous_polar_segment_filter": {
"log": "",
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},
"loop_creation": {
"log": "",
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},
"loop_grower_N_term_symm": {
"log": "",
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},
"loop_hash": {
"log": "",
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},
"loop_modeling": {
"log": "",
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},
"make_and_perturb_bundle_multirepeat": {
"log": "",
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},
"make_exemplar": {
"log": "",
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},
"make_mainchain_potential": {
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},
"make_mainchain_potential_symm": {
"log": "",
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},
"make_mainchain_potential_symm_preproline": {
"log": "",
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},
"make_rot_lib": {
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},
"make_symmdef_file": {
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},
"match_1c2t": {
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},
"match_1n9l": {
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},
"match_6cpa": {
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},
"match_xml": {
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"state": "passed"
},
"measure_lcaa_radii": {
"log": "",
"state": "passed"
},
"membrane_abinitio": {
"log": "",
"state": "passed"
},
"metal_setup": {
"log": "",
"state": "passed"
},
"metalloprotein_abrelax": {
"log": "",
"state": "passed"
},
"metalloprotein_broker": {
"log": "",
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},
"metropolis_hastings": {
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},
"mf_fixbb_des": {
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},
"mf_fixbb_sc": {
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},
"mf_flexbb_sc": {
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},
"mg_modeler": {
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},
"mg_modeler_lores": {
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},
"mhc_epitope": {
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},
"mhc_epitope_nmer_preload": {
"log": "",
"state": "passed"
},
"min_pack_min": {
"log": "",
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},
"minimize_6Dloopclose": {
"log": "",
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},
"minimize_with_elec_dens": {
"log": "",
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},
"mirror_symm": {
"log": "",
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},
"mixed_monte_carlo": {
"log": "",
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},
"mm_params": {
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},
"mmtfIO_score_test": {
"log": "",
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},
"molfile_to_params": {
"log": "",
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},
"molfile_to_params_polymer": {
"log": "",
"state": "passed"
},
"motif_dna_packer_design": {
"log": "",
"state": "passed"
},
"motif_extraction": {
"log": "",
"state": "passed"
},
"motif_score_filter": {
"log": "",
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},
"mp_dock": {
"log": "",
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},
"mp_dock_ensemble": {
"log": "",
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},
"mp_dock_prepack": {
"log": "",
"state": "passed"
},
"mp_dock_setup": {
"log": "",
"state": "passed"
},
"mp_domain_assembly": {
"log": "",
"state": "passed"
},
"mp_domain_assembly_FtsQ": {
"log": "",
"state": "passed"
},
"mp_find_interface": {
"log": "",
"state": "passed"
},
"mp_interface_statistics": {
"log": "",
"state": "passed"
},
"mp_ligand_interface": {
"log": "",
"state": "passed"
},
"mp_loadtime": {
"log": "",
"state": "passed"
},
"mp_mutate_relax": {
"log": "",
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},
"mp_mutate_repack": {
"log": "",
"state": "passed"
},
"mp_quick_relax": {
"log": "",
"state": "passed"
},
"mp_quick_relax_ref2015_memb": {
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},
"mp_range_relax": {
"log": "",
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},
"mp_relax": {
"log": "",
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},
"mp_score_jd2": {
"log": "",
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},
"mp_span_ang_ref2015_memb": {
"log": "",
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},
"mp_span_from_pdb": {
"log": "",
"state": "passed"
},
"mp_symdock": {
"log": "",
"state": "passed"
},
"mp_symmetry_load": {
"log": "",
"state": "passed"
},
"mp_transform": {
"log": "",
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},
"mp_transform_optimize": {
"log": "",
"state": "passed"
},
"mp_vis_emb": {
"log": "",
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},
"mpi_multistate_design": {
"log": "",
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},
"mpi_simple_cycpep_predict": {
"log": "",
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},
"mpi_simple_cycpep_predict_4level": {
"log": "",
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},
"mpi_simple_cycpep_predict_computing_pnear_to_all": {
"log": "",
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},
"mpil_find_pore_ahelical": {
"log": "",
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},
"mpil_find_pore_bbarrel": {
"log": "",
"state": "passed"
},
"mpil_load_implicit_lipids": {
"log": "",
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},
"mr_protocols": {
"log": "",
"state": "passed"
},
"multistage_rosetta_scripts": {
"log": "",
"state": "passed"
},
"multistage_rosetta_scripts_clustering": {
"log": "",
"state": "passed"
},
"multithreaded_fastdesign": {
"log": "",
"state": "passed"
},
"multithreaded_fixbb": {
"log": "",
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},
"multithreaded_interaction_graph_accuracy": {
"log": "",
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},
"multithreaded_interaction_graph_accuracy_symm": {
"log": "",
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},
"multithreaded_packrotamersmover": {
"log": "",
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},
"mutate": {
"log": "",
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},
"ncaa_fixbb": {
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},
"ncbb_packer_palette": {
"log": "",
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},
"netcharge_design": {
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},
"netcharge_design_symm": {
"log": "",
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},
"next_generation_KIC": {
"log": "",
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},
"noe_assignment": {
"log": "",
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},
"non-canonical_connectivities": {
"log": "",
"state": "passed"
},
"nonideal_rtmin": {
"log": "",
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},
"nucleobase_sample_around": {
"log": "",
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},
"number_of_residuetypes": {
"log": "",
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},
"oligourea_design": {
"log": "",
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},
"oligourea_predict": {
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},
"oop_create": {
"log": "",
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},
"oop_design": {
"log": "",
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},
"oop_dock_design": {
"log": "",
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},
"orbitals": {
"log": "",
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},
"output_schema": {
"log": "",
"state": "passed"
},
"pH_mode": {
"log": "",
"state": "passed"
},
"pepspec_anchor_dock": {
"log": "",
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},
"peptiderive": {
"log": "",
"state": "passed"
},
"per_residue_energies": {
"log": "",
"state": "passed"
},
"per_residue_sc_sasa": {
"log": "",
"state": "passed"
},
"per_residue_solvent_exposure": {
"log": "",
"state": "passed"
},
"pertmin": {
"log": "",
"state": "passed"
},
"perturb_helical_bundle": {
"log": "",
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},
"perturb_helical_bundle_copying_pitch": {
"log": "",
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},
"perturb_helical_bundle_epsilon": {
"log": "",
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},
"perturb_helical_bundle_setting": {
"log": "",
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},
"perturb_helical_bundle_z_offset": {
"log": "",
"state": "passed"
},
"phiselector": {
"log": "",
"state": "passed"
},
"phosphonate": {
"log": "",
"state": "passed"
},
"phosphorylation": {
"log": "",
"state": "passed"
},
"place_simultaneously": {
"log": "",
"state": "passed"
},
"pmut_scan": {
"log": "",
"state": "passed"
},
"pna": {
"log": "",
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},
"pna_base_pairs": {
"log": "",
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},
"pocket_measure": {
"log": "",
"state": "passed"
},
"pocket_relax": {
"log": "",
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},
"pocket_suggest_targets": {
"log": "",
"state": "passed"
},
"polyaramid_test_trivial": {
"log": "",
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},
"pose_sewing": {
"log": "",
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},
"posttranslationalmod_io": {
"log": "",
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},
"ppi_v3_suiteA": {
"log": "",
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},
"ppi_v3_suiteB": {
"log": "",
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},
"ppi_v3_suiteC": {
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},
"ppi_v3_suiteD": {
"log": "",
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},
"ppi_v3_suiteE": {
"log": "",
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},
"ppi_v3_suiteF": {
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},
"ppi_v3_suiteG": {
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},
"ppk": {
"log": "",
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},
"protocol_metric": {
"log": "",
"state": "passed"
},
"pwsho": {
"log": "",
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},
"pymol_cif": {
"log": "",
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},
"r_pdb2top": {
"log": "",
"state": "passed"
},
"r_rmsf": {
"log": "",
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},
"ralford_dump_rotamers": {
"log": "",
"state": "passed"
},
"rama_mutation_selector": {
"log": "",
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},
"range_relax_w_cst": {
"log": "",
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},
"rb_recces": {
"log": "",
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},
"rdkit_metrics": {
"log": "",
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},
"read_polymeric_components": {
"log": "",
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},
"readin_dna_rna_protein": {
"log": "",
"state": "passed"
},
"real_virt_mover": {
"log": "",
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},
"recces_turner": {
"log": "",
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},
"recon_design": {
"log": "",
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},
"recon_design_mpi": {
"log": "",
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},
"referencepose_mutateresidue": {
"log": "",
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},
"relax_w_allatom_cst": {
"log": "",
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},
"remodel_disulfides_rosettascripts": {
"log": "",
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},
"remodel_helical_repeat": {
"log": "",
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},
"repack_with_elec_dens": {
"log": "",
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},
"repeat_propagate": {
"log": "",
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},
"repeat_propagate_v2": {
"log": "",
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},
"repeat_propagate_v3": {
"log": "",
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},
"repeat_relax": {
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},
"replica_docking": {
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},
"report_hbonds_for_plugin": {
"log": "",
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},
"res_lipo_ref2015_memb": {
"log": "",
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},
"residue_energy_breakdown": {
"log": "",
"state": "passed"
},
"resource_database_locator": {
"log": "",
"state": "passed"
},
"restype_converter": {
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},
"rings": {
"log": "",
"state": "passed"
},
"rna_add_WC_stats": {
"log": "",
"state": "passed"
},
"rna_assemble": {
"log": "",
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},
"rna_cluster": {
"log": "",
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},
"rna_denovo": {
"log": "",
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},
"rna_denovo_RNP_low_res": {
"log": "",
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},
"rna_denovo_RNP_refine_native": {
"log": "",
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},
"rna_denovo_base_pair_constraints": {
"log": "",
"state": "passed"
},
"rna_denovo_base_pair_setup": {
"log": "",
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},
"rna_denovo_bps": {
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},
"rna_denovo_bps_fixed_ends": {
"log": "",
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},
"rna_denovo_bps_helix_ends": {
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},
"rna_denovo_dna_bridge": {
"log": "",
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},
"rna_denovo_fragment_homology_exclusion": {
"log": "",
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},
"rna_denovo_grid_vdw": {
"log": "",
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},
"rna_denovo_lariat": {
"log": "",
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},
"rna_denovo_new_FT_2in_dens": {
"log": "",
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},
"rna_denovo_new_FT_5P_j12_leadzyme": {
"log": "",
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},
"rna_denovo_new_FT_RNP_2prot_dens": {
"log": "",
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},
"rna_denovo_new_FT_rna_two_chains": {
"log": "",
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},
"rna_denovo_new_libs": {
"log": "",
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},
"rna_denovo_symm_hack": {
"log": "",
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},
"rna_design": {
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},
"rna_farfar_block_stack": {
"log": "",
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},
"rna_farfar_noncanonical_hairpin": {
"log": "",
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},
"rna_farfar_syn_chi_res": {
"log": "",
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},
"rna_helix": {
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},
"rna_minimize": {
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},
"rna_minimize_6D_loop_close": {
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},
"rna_motif": {
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},
"rna_predict_chem_map": {
"log": "",
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},
"rna_puzzle11_H2H3H4_run3_connectU40": {
"log": "",
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},
"rna_puzzle12_P5P6P7_DMS": {
"log": "",
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},
"rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation": {
"log": "",
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},
"rna_puzzle5_p2_GAAA_mini": {
"log": "",
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},
"rna_puzzle6_U75G76A77_on_thread1": {
"log": "",
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},
"rna_puzzle6_j67_into_p6p7rigidbody_thread1": {
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},
"rna_ribosome_tether": {
"log": "",
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},
"rna_score": {
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},
"rna_screen_phosphates": {
"log": "",
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},
"rna_suitename": {
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},
"rnp_ddg_calc_mut": {
"log": "",
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},
"rnp_ddg_calc_setup": {
"log": "",
"state": "passed"
},
"rnp_ddg_calc_wt": {
"log": "",
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},
"rnp_ddg_finalize": {
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},
"rnp_ddg_relax_command_1": {
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},
"rnp_ddg_relax_command_2": {
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},
"rnp_ddg_relax_finalize": {
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},
"rnp_ddg_relax_setup": {
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},
"rollmover": {
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},
"rosetta_scripts_hbond_options": {
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},
"rosetta_scripts_include": {
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},
"rosetta_scripts_info": {
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},
"rosetta_scripts_jd3": {
"log": "",
"state": "passed"
},
"rosetta_scripts_loops": {
"log": "",
"state": "passed"
},
"rosetta_scripts_setup": {
"log": "",
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},
"rosie_ligand_docking": {
"log": "",
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},
"rotamer_probability": {
"log": "",
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},
"rotamer_recovery": {
"log": "",
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},
"rotamer_recovery_compare_two_structures": {
"log": "",
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},
"rs_flexbbmoves": {
"log": "",
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},
"rs_loophash": {
"log": "",
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},
"sasa_metric_options": {
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},
"score12_docking": {
"log": "",
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},
"score_aln": {
"log": "",
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},
"score_jd2": {
"log": "",
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},
"score_only_silence": {
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},
"sdf_reader": {
"log": "",
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},
"secondary_structure_output": {
"log": "",
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},
"seed_ensemble_JD2_JI": {
"log": "",
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},
"select_best_unique_ligand_poses": {
"log": "",
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},
"selected_residue_count_metric": {
"log": "",
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},
"sequence_profile_constraints": {
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},
"sequence_recovery": {
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},
"sequence_tolerance": {
"log": "",
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},
"set_torsion": {
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},
"shobuns": {
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},
"silent2frag": {
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},
"simple_cycpep_predict": {
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},
"simple_cycpep_predict_1_4_bbmb": {
"log": "",
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},
"simple_cycpep_predict_angle": {
"log": "",
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},
"simple_cycpep_predict_anglelength": {
"log": "",
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},
"simple_cycpep_predict_beta_thioether_lariat": {
"log": "",
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},
"simple_cycpep_predict_bondangle_bondlength": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_cartesian": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_cispro": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_cterm_isopeptide_lariat": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_cterm_isopeptide_lariat_tailless": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_design": {
"log": "",
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},
"simple_cycpep_predict_nmethyl": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_nterm_isopeptide_lariat": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_nterm_isopeptide_lariat_tailless": {
"log": "",
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},
"simple_cycpep_predict_octahedral_metal": {
"log": "",
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},
"simple_cycpep_predict_peptoid": {
"log": "",
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},
"simple_cycpep_predict_setting": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_sidechain_isopeptide": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_sidechain_isopeptide_reverse": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_square_planar_metal": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_square_pyramidal_metal": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_symm_gly": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_symmetric_sampling": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_tbmb": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_terminal_disulfide": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_terminal_disulfide_internal_permutations": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_terminal_disulfide_tails": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_terminal_disulfide_tails_2": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_tetrahedral_metal": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_tetrahedral_metal_asp": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_thioether_cis_sampling": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_thioether_lariat": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_tma": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_trigonal_planar_metal": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_trigonal_pyramidal_metal": {
"log": "",
"state": "passed"
},
"simple_dna_test": {
"log": "",
"state": "passed"
},
"simple_glycosylation": {
"log": "",
"state": "passed"
},
"simple_glycosylation_alternate_AAs": {
"log": "",
"state": "passed"
},
"simple_grafting_movers": {
"log": "",
"state": "passed"
},
"simple_hbondstoatom": {
"log": "",
"state": "passed"
},
"simple_metric_cache": {
"log": "",
"state": "passed"
},
"simple_metric_features": {
"log": "",
"state": "passed"
},
"simple_metric_filter": {
"log": "",
"state": "passed"
},
"simple_metrics": {
"log": "",
"state": "passed"
},
"simple_metrics_in_protocols": {
"log": "",
"state": "passed"
},
"simple_metrics_per_residue": {
"log": "",
"state": "passed"
},
"site_constraint": {
"log": "",
"state": "passed"
},
"small_molecule_lattice_dock": {
"log": "",
"state": "passed"
},
"smallmover_resselector": {
"log": "",
"state": "passed"
},
"smart_annealer": {
"log": "",
"state": "passed"
},
"splice_in_4loops_longer": {
"log": "",
"state": "passed"
},
"splice_in_4loops_shorter": {
"log": "",
"state": "passed"
},
"splice_out_H1_H2_longer": {
"log": "",
"state": "passed"
},
"splice_out_H1_H2_same": {
"log": "",
"state": "passed"
},
"splice_out_H1_H2_shorter": {
"log": "",
"state": "passed"
},
"splice_out_H3_longer": {
"log": "",
"state": "passed"
},
"splice_out_H3_same": {
"log": "",
"state": "passed"
},
"splice_out_H3_shorter": {
"log": "",
"state": "passed"
},
"splice_out_L1_L2_longer": {
"log": "",
"state": "passed"
},
"splice_out_L1_L2_same": {
"log": "",
"state": "passed"
},
"splice_out_L1_L2_shorter": {
"log": "",
"state": "passed"
},
"splice_out_L3_longer": {
"log": "",
"state": "passed"
},
"splice_out_L3_same": {
"log": "",
"state": "passed"
},
"splice_out_L3_shorter": {
"log": "",
"state": "passed"
},
"startfrom_file": {
"log": "",
"state": "passed"
},
"stepwise_lores": {
"log": "",
"state": "passed"
},
"stored_residue_subset": {
"log": "",
"state": "passed"
},
"struc_set_fragment_picker": {
"log": "",
"state": "passed"
},
"super_aln": {
"log": "",
"state": "passed"
},
"supercharge": {
"log": "",
"state": "passed"
},
"surface_docking": {
"log": "",
"state": "passed"
},
"swa_protein_CCDclose": {
"log": "",
"state": "passed"
},
"swa_protein_build_at_Cterminus": {
"log": "",
"state": "passed"
},
"swa_protein_build_at_Nterminus": {
"log": "",
"state": "passed"
},
"swa_protein_cluster": {
"log": "",
"state": "passed"
},
"swa_protein_combine_loops": {
"log": "",
"state": "passed"
},
"swa_protein_loop_sampler": {
"log": "",
"state": "passed"
},
"swa_protein_prepack": {
"log": "",
"state": "passed"
},
"swa_rna_erraser": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_01_append": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_02_prepend": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_03_append_to_silent": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_04_clustering": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_05_prepend_to_5primeterminus": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_06_append_to_3primeterminus": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_07_prepend_dinucleotide": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_08_append_dinucleotide": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_09_sample_virtual_ribose": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_10_prepend_and_ccd_close": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_11_append_and_ccd_close": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_12_helix_addition": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_13_chunk_combination_and_closure": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_14_combine_long_loop_filtering": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_15_combine_long_loop_sampling": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_17_append_floating_base": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_18_rebuild_bulge": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_19_prepend_floating_base_by_jump": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_20_append_floating_base_by_jump": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_22_prepend_and_kic_close": {
"log": "",
"state": "passed"
},
"swa_rna_gagu_23_append_and_kic_close": {
"log": "",
"state": "passed"
},
"swa_rna_loop_clusterer": {
"log": "",
"state": "passed"
},
"swa_rna_loop_sampler": {
"log": "",
"state": "passed"
},
"sweep_respair_energies": {
"log": "",
"state": "passed"
},
"swm_add_rosettascripts": {
"log": "",
"state": "passed"
},
"swm_beta_peptide_loop": {
"log": "",
"state": "passed"
},
"swm_build_full_model": {
"log": "",
"state": "passed"
},
"swm_dna_bridge": {
"log": "",
"state": "passed"
},
"swm_dna_loop": {
"log": "",
"state": "passed"
},
"swm_general_polymer_sampler": {
"log": "",
"state": "passed"
},
"swm_l_rna": {
"log": "",
"state": "passed"
},
"swm_protein_CCDmove": {
"log": "",
"state": "passed"
},
"swm_protein_from_scratch": {
"log": "",
"state": "passed"
},
"swm_protein_loop_sampler": {
"log": "",
"state": "passed"
},
"swm_protein_move_inside_coiledcoil_by_bond": {
"log": "",
"state": "passed"
},
"swm_protein_move_inside_helix_by_bond": {
"log": "",
"state": "passed"
},
"swm_protein_preminimize": {
"log": "",
"state": "passed"
},
"swm_rna_base_pair_constraints": {
"log": "",
"state": "passed"
},
"swm_rna_checkpoint_partition": {
"log": "",
"state": "passed"
},
"swm_rna_fourwayjunction": {
"log": "",
"state": "passed"
},
"swm_rna_loop_design": {
"log": "",
"state": "passed"
},
"swm_rna_move_align_dock": {
"log": "",
"state": "passed"
},
"swm_rna_move_inside_helix_by_bond": {
"log": "",
"state": "passed"
},
"swm_rna_move_inside_helix_by_jump": {
"log": "",
"state": "passed"
},
"swm_rna_move_two_strands": {
"log": "",
"state": "passed"
},
"swm_rna_nickedhelix": {
"log": "",
"state": "passed"
},
"swm_rna_protonated_adenosine": {
"log": "",
"state": "passed"
},
"swm_rna_singleloop": {
"log": "",
"state": "passed"
},
"swm_rna_srl_triplet": {
"log": "",
"state": "passed"
},
"symm_disulfidize": {
"log": "",
"state": "passed"
},
"symm_rotamer_boltzmann": {
"log": "",
"state": "passed"
},
"symmetric_cycpep_align_and_symmetrize": {
"log": "",
"state": "passed"
},
"symmetric_docking": {
"log": "",
"state": "passed"
},
"symmetrical_residue_selector": {
"log": "",
"state": "passed"
},
"symmetry_data_resource": {
"log": "",
"state": "passed"
},
"symmetry_multicomponent": {
"log": "",
"state": "passed"
},
"target_clash": {
"log": "",
"state": "passed"
},
"task_selector": {
"log": "",
"state": "passed"
},
"tcrmodel": {
"log": "",
"state": "passed"
},
"template_features": {
"log": "",
"state": "passed"
},
"tensorflow_connection_test": {
"log": "",
"state": "passed"
},
"tensorflow_manager": {
"log": "",
"state": "passed"
},
"tensorflow_simple_model_load_and_evaluate": {
"log": "",
"state": "passed"
},
"test1_benchmark": {
"log": "",
"state": "passed"
},
"test_computed_saxs_spectrum": {
"log": "",
"state": "passed"
},
"test_d_l_readin": {
"log": "",
"state": "passed"
},
"test_degreaser": {
"log": "",
"state": "passed"
},
"test_energy_method_options": {
"log": "",
"state": "passed"
},
"test_idealize": {
"log": "",
"state": "passed"
},
"test_rosetta_thread_manager_advanced_API": {
"log": "",
"state": "passed"
},
"test_rosetta_thread_manager_basic_API": {
"log": "",
"state": "passed"
},
"thermal_sampler": {
"log": "",
"state": "passed"
},
"thread_local_tracers_check": {
"log": "",
"state": "passed"
},
"threefold_symm_peptide_design": {
"log": "",
"state": "passed"
},
"threefoldlinkermover_tbmb": {
"log": "",
"state": "passed"
},
"threefoldlinkermover_tbmb_symmetric": {
"log": "",
"state": "passed"
},
"tna_base_pairs": {
"log": "",
"state": "passed"
},
"torsion_restricted_sampling": {
"log": "",
"state": "passed"
},
"trRosetta": {
"log": "",
"state": "passed"
},
"trRosettaConstraintGenerator": {
"log": "",
"state": "passed"
},
"trRosettaConstraintGenerator_rosettascripts": {
"log": "",
"state": "passed"
},
"trRosettaProtocolMover": {
"log": "",
"state": "passed"
},
"trRosettaProtocolMover_rosettascripts": {
"log": "",
"state": "passed"
},
"trRosettaProtocolMover_rosettascripts_diskwrite": {
"log": "",
"state": "passed"
},
"trRosettaProtocolMover_rosettascripts_diskwrite_only": {
"log": "",
"state": "passed"
},
"trRosetta_test_predict": {
"log": "",
"state": "passed"
},
"trRosetta_test_predict_ubiquitin": {
"log": "",
"state": "passed"
},
"trRosetta_test_predict_ubiquitin_cst_file_write": {
"log": "",
"state": "passed"
},
"trRosetta_test_predict_ubiquitin_cst_file_write_only": {
"log": "",
"state": "passed"
},
"trRosetta_test_predict_ubiquitin_init_by_bins": {
"log": "",
"state": "passed"
},
"unfolded_state_energy_calc": {
"log": "",
"state": "passed"
},
"validate_database": {
"log": "",
"state": "passed"
},
"vancomycin": {
"log": "",
"state": "passed"
},
"vip": {
"log": "",
"state": "passed"
},
"voids_penalty_energy_design": {
"log": "",
"state": "passed"
},
"voids_penalty_energy_design_symmetry": {
"log": "",
"state": "passed"
},
"write_mol_file": {
"log": "",
"state": "passed"
},
"zinc_heterodimer": {
"log": "",
"state": "passed"
},
"zinc_homodimer_design": {
"log": "",
"state": "passed"
},
"zinc_homodimer_setup": {
"log": "",
"state": "passed"
}
}
}