{
"compared_with_test": {
"full_name": "linux.gcc.mpi.serialization.integration.mpi",
"name": "integration.mpi",
"platform": {
"compiler": "gcc",
"extras": [
"mpi",
"serialization"
],
"os": "linux"
},
"platform_as_string": "linux.gcc.mpi.serialization",
"revision": {
"branch": "master",
"revision_id": 61975
},
"state": "failed",
"test_id": 788260
},
"summary": {
"failed": 1,
"failed_tests": [
"replica_docking"
],
"total": 27
},
"tests": {
"backbonegridsampler_nstruct_mode": {
"log": "",
"state": "passed"
},
"database_md5": {
"log": "",
"state": "passed"
},
"features_pdb_mpi": {
"log": "",
"state": "passed"
},
"helical_bundle_predict": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_psipred": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_psipred_with_helix_globals": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_sequence": {
"log": "",
"state": "passed"
},
"helical_bundle_predict_skipping_residues": {
"log": "",
"state": "passed"
},
"mpi_simple_cycpep_predict": {
"log": "",
"state": "passed"
},
"mpi_simple_cycpep_predict_4level": {
"log": "",
"state": "passed"
},
"mpi_simple_cycpep_predict_computing_pnear_to_all": {
"log": "",
"state": "passed"
},
"recon_design_mpi": {
"log": "",
"state": "passed"
},
"replica_docking": {
"log": "Brief Diff:\nFiles /home/benchmark/working_dir/master:61975/replica_docking/log and /home/benchmark/working_dir/master:61976/replica_docking/log differ\r\nFiles /home/benchmark/working_dir/master:61975/replica_docking/logs/log_2 and /home/benchmark/working_dir/master:61976/replica_docking/logs/log_2 differ\r\nFiles /home/benchmark/working_dir/master:61975/replica_docking/logs/log_3 and /home/benchmark/working_dir/master:61976/replica_docking/logs/log_3 differ\r\nFiles /home/benchmark/working_dir/master:61975/replica_docking/.test_got_timeout_kill.log and /home/benchmark/working_dir/master:61976/replica_docking/.test_got_timeout_kill.log differ\r\n\n\nFull Diff:\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/master:61975/replica_docking/log /home/benchmark/working_dir/master:61976/replica_docking/log\r\n2c2\r\n< mpirun noticed that process rank 5 with PID 2323496 on node nobu-5 exited on signal 9 (Killed).\r\n---\r\n> mpirun noticed that process rank 3 with PID 10592 on node takeshi exited on signal 9 (Killed).\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/master:61975/replica_docking/logs/log_2 /home/benchmark/working_dir/master:61976/replica_docking/logs/log_2\r\n1c1\r\n< core.init: (2) Rosetta version: 2023.03.post.dev+5.HEAD.a800cb7 a800cb78f0ac3bfbbe15a3e5334afc7d440ab143 git@github.com:CyrusBiotechnology/rosetta-main.git 2023-01-23T10:16:42\r\n---\r\n> core.init: (2) Rosetta version: 2023.03.post.dev+8.HEAD.2c586ea 2c586ea176bef82aa012b77dcf6907e26e49a49e git@github.com:CyrusBiotechnology/rosetta-main.git 2023-01-25T12:55:36\r\n9c9\r\n< core.chemical.GlobalResidueTypeSet: (2) Total time to initialize 3.91 seconds.\r\n---\r\n> core.chemical.GlobalResidueTypeSet: (2) Total time to initialize 8.16 seconds.\r\n44c44\r\n< core.pack.dunbrack.RotamerLibrary: (2) Dunbrack 2010 library took 0.33 seconds to load from binary\r\n---\r\n> core.pack.dunbrack.RotamerLibrary: (2) Dunbrack 2010 library took 0.66 seconds to load from binary\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/master:61975/replica_docking/logs/log_3 /home/benchmark/working_dir/master:61976/replica_docking/logs/log_3\r\n1c1\r\n< core.init: (3) Rosetta version: 2023.03.post.dev+5.HEAD.a800cb7 a800cb78f0ac3bfbbe15a3e5334afc7d440ab143 git@github.com:CyrusBiotechnology/rosetta-main.git 2023-01-23T10:16:42\r\n---\r\n> core.init: (3) Rosetta version: 2023.03.post.dev+8.HEAD.2c586ea 2c586ea176bef82aa012b77dcf6907e26e49a49e git@github.com:CyrusBiotechnology/rosetta-main.git 2023-01-25T12:55:36\r\n9c9\r\n< core.chemical.GlobalResidueTypeSet: (3) Total time to initialize 3.95 seconds.\r\n---\r\n> core.chemical.GlobalResidueTypeSet: (3) Total time to initialize 7.51 seconds.\r\n44c44\r\n< core.pack.dunbrack.RotamerLibrary: (3) Dunbrack 2010 library took 0.32 seconds to load from binary\r\n---\r\n> core.pack.dunbrack.RotamerLibrary: (3) Dunbrack 2010 library took 0.67 seconds to load from binary\r\ndiff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/master:61975/replica_docking/.test_got_timeout_kill.log /home/benchmark/working_dir/master:61976/replica_docking/.test_got_timeout_kill.log\r\n1c1\r\n< *** Test replica_docking exceeded the timeout=3600 and will be killed! [2023-01-23 13:10:28.058995]\r\n---\r\n> *** Test replica_docking exceeded the timeout=3600 and will be killed! [2023-01-25 23:12:18.408205]\r\n\nCompare(...): Marking as \"Script failed\" due to presense of .test_did_not_run.log or .test_got_timeout_kill.log file!\n",
"state": "script failed"
},
"simple_cycpep_predict_beta_thioether_lariat": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_bondangle_bondlength": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_cterm_isopeptide_lariat": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_cterm_isopeptide_lariat_tailless": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_design": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_nterm_isopeptide_lariat": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_nterm_isopeptide_lariat_tailless": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_sidechain_isopeptide": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_sidechain_isopeptide_reverse": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_terminal_disulfide": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_terminal_disulfide_tails": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_terminal_disulfide_tails_2": {
"log": "",
"state": "passed"
},
"simple_cycpep_predict_thioether_lariat": {
"log": "",
"state": "passed"
},
"threefold_symm_peptide_design": {
"log": "",
"state": "passed"
}
}
}