{
"config": {
"test_path": "build/test/debug/linux/5.4/64/x86/gcc/4.8/default"
},
"runtime": {
"apps.LigandDockTest": 1280.11,
"basic.CitationManagerTests": 7.4947,
"basic.CmdlineOptionsOrderTests": 17.3148,
"basic.DatabaseResourceLocatorTests": 8.37033,
"basic.ExecuteTest": 0.37791,
"basic.FileSystemResourceLocatorTests": 6.65554,
"basic.HierarchicalDataMapTests": 0.234596,
"basic.OptionsSystemTests": 34.0408,
"basic.ResourceLoaderFactoryTests": 0.150718,
"basic.ResourceManagerTests": 87.9489,
"basic.SVDSolverTest": 0.104926,
"basic.StringResourceStreamTests": 0.0238554,
"core.AACompositionEnergyTests_10pctaro": 892.853,
"core.AACompositionEnergyTests_1W": 900.232,
"core.AACompositionEnergyTests_1W1Y": 871.528,
"core.AACompositionEnergyTests_20pctpro": 898.112,
"core.AACompositionEnergyTests_20pctprofract": 896.189,
"core.AACompositionEnergyTests_2WY": 872.371,
"core.AACompositionEnergyTests_2aro": 895.426,
"core.AACompositionEnergyTests_3ACPC": 878.866,
"core.AACompositionEnergyTests_aliphnotpro": 867.016,
"core.AACompositionEnergyTests_bools": 870.025,
"core.AACompositionEnergyTests_consttail": 811.503,
"core.AACompositionEnergyTests_interpolate_linear": 983.965,
"core.AACompositionEnergyTests_linconsttail": 811.197,
"core.AACompositionEnergyTests_packer": 900.611,
"core.AACompositionEnergyTests_quadratail": 811.287,
"core.AACompositionEnergyTests_quadratic_interpolation": 991.383,
"core.AARepeatEnergyTests": 993.782,
"core.ABEGOManagerTest": 859.47,
"core.AltCodesIOTests": 6.87232,
"core.AmberPeriodicFuncTests": 0.0247159,
"core.AmbiguousConstraintTests": 0.0247643,
"core.AmbiguousNMRConstraintTests": 0.0247579,
"core.AmbiguousNMRDistanceConstraintTests": 0.0249519,
"core.AndJumpSelectorTests": 1017.34,
"core.AndResidueSelectorTests": 945.229,
"core.AngleConstraintTests": 890.921,
"core.AnnotatedSequenceTests": 1131.65,
"core.ApproximateBuriedUnsatPenaltyTests": 6109.36,
"core.ArgCationPiEnergyTests": 881.247,
"core.AspartimidePenaltyEnergyTests": 815.931,
"core.AtomICoorTests": 885.254,
"core.AtomPairConstraintTests": 891.091,
"core.AtomTests": 10.4517,
"core.AtomTreeCollectionTests": 1785.49,
"core.AtomTreeDiffTests": 1769.37,
"core.AtomTreeTests": 872.029,
"core.AtomTypeDatabaseIOTests": 2242.69,
"core.AtomTypeSetTests": 7.35717,
"core.AtomicDepthTests": 22362.8,
"core.AutomorphismTest": 814.782,
"core.BBTorsionSRFDTest": 448.342,
"core.BackboneAATests": 1277.66,
"core.BackboneStubConstraintTests": 6.75685,
"core.BackboneStubLinearConstraintTests": 6.77783,
"core.BasicDesignTests": 879.04,
"core.BetaNov16WithAutoSetupMetalsTests": 2429.67,
"core.BigBinConstraintTests": 822.678,
"core.BinSelectorTests": 964.314,
"core.BinTransitionCalculatorTests": 918.813,
"core.BinarySilentMultiposeTests": 3036.72,
"core.BinarySilentTests": 3116.95,
"core.BlockSelectorTests": 868.851,
"core.BondLengthsTests": 7.43265,
"core.BondedSelectorTests": 814.161,
"core.BoundConstraintTests": 21.4712,
"core.BuriedUnsatPenaltyGraphSymmetricTests": 2317.9,
"core.BuriedUnsatPenaltyGraphTests": 2169.8,
"core.BuriedUnsatPenaltySymmetricTests": 4314.01,
"core.BuriedUnsatPenaltyTests": 4192.63,
"core.CCS_IMMSEnergyTests": 976.662,
"core.CHIEnergyFunctionTests": 15.4023,
"core.CachableDataTypeTests": 0.0781965,
"core.CacheableResidueTypeSetsTests": 809.761,
"core.CalculatorMetricsTests": 1655.5,
"core.CarbohydrateDatabaseIOTests": 18.1113,
"core.CarbohydrateInfoManagerTests": 7.32947,
"core.CarbohydrateInfoTests": 2527.66,
"core.CarbohydratePoseIOTests": 7.23836,
"core.CarbohydratePoseUtilityFunctionTests": 4267.86,
"core.CarbohydrateScoringDatabaseIOTests": 6.85856,
"core.CarbohydrateScoringUtilityFunctionTests": 1102.38,
"core.CarbohydrateStereochemTests": 3916.13,
"core.CarbonHBondEnergyTests": 57.1297,
"core.CartGridTest": 20.384,
"core.CartesianBondedEnergyBBDepTests": 1427.57,
"core.CartesianBondedEnergyTests": 960.521,
"core.CenRotModelEnergyTests": 1151.25,
"core.ChainSelectorTests": 1082,
"core.ChainbreakEnergyTests": 1280.99,
"core.Chains62Tests": 872.866,
"core.CharmmPeriodicFuncTests": 0.0252,
"core.ChemistryNamespaceUtilityFunctionTests": 1091.68,
"core.CircularGeneral1D_FuncTests": 0.0248431,
"core.CircularHarmonicFuncTests": 0.0248872,
"core.CircularPowerFuncTests": 0.0249523,
"core.CircularSigmoidalFuncTests": 0.0246963,
"core.CircularSplineFuncTests": 0.0247468,
"core.ClashBasedRepackShellTests": 2562.9,
"core.ClashBasedShellSelectorTests": 12236,
"core.CloseContactResidueSelectorTests": 882.253,
"core.ConfluentSelectorTests": 875.143,
"core.ConformationAtomTest": 28.2308,
"core.ConformationTests": 2443.49,
"core.ConformationUtilityFunctionTests": 1133.89,
"core.ConsensusSequenceParserTests": 10.5487,
"core.ConstantConstraintTests": 0.0246741,
"core.ConstantFuncTests": 0.0247917,
"core.ConstraintIOTests": 1693.18,
"core.ConstraintSetRemappingTests": 1421.26,
"core.ConstraintSetTests": 35.8266,
"core.ConstraintUtilTests": 1047.96,
"core.ConstraintsEnergyTests": 1057.9,
"core.ContactOrderEnergy_Tests": 13654.7,
"core.CoordinateConstraintTests": 0.0248509,
"core.CopyDofsTest": 1318.47,
"core.CoreKinematicsUtilTests": 10.8281,
"core.CountViolFuncTests": 0.025093,
"core.CtermAmidationTests": 851.402,
"core.CustomRealValueMetricTests": 980.685,
"core.CyclicGeometryTests": 2795.29,
"core.CyclicGeometryTests_nmethyl": 3001.46,
"core.CyclicGeometryTwoChainTests": 14631.6,
"core.CyclicGeometryTwoChain_nmethyl_Tests": 15497.9,
"core.CyclicGeometry_beta_peptoid_TwoChainTests": 20361.5,
"core.CyclicGeometry_betanov15_Tests": 2918.75,
"core.CyclicGeometry_betanov15_TwoChainTests": 16291.5,
"core.CyclicGeometry_betanov16_Tests": 3546.73,
"core.CyclicGeometry_betanov16_TwoChainTests": 22863.1,
"core.CyclicGeometry_nmethyl_beta_Tests": 4398.14,
"core.CyclicGeometry_nmethyl_beta_TwoChainTests_A": 15303,
"core.CyclicGeometry_nmethyl_beta_TwoChainTests_B": 15759.5,
"core.CyclicGeometry_nmethyl_betanov15_Tests": 3171.32,
"core.CyclicGeometry_nmethyl_betanov15_TwoChainTests": 19895.9,
"core.CyclicGeometry_peptoid_Tests": 13462,
"core.CyclicGeometry_peptoid_TwoChainTests": 27253.5,
"core.CyclicGeometry_peptoid_beta_Tests": 14656.7,
"core.DAminoAcidImportTests": 925.098,
"core.DEERDataCacheTest": 1321.76,
"core.DEERDataTest": 56.4535,
"core.DEEREnergyMethodTest": 1472.48,
"core.DEPC_MS_EnergyTests": 1177.82,
"core.DihedralConstraintTests": 1415.14,
"core.DihedralPairConstraintTests": 0.0250497,
"core.Dunbrack2002Test": 800.817,
"core.DunbrackEnergyTests": 1730.09,
"core.DunbrackEnergyTests_oligourea": 2828.18,
"core.DunbrackEnergyTests_peptoid": 1375.84,
"core.EPRSpinLabelTest": 1057.45,
"core.ElementsTests": 0.102972,
"core.EnergyGraphTests": 0.0252357,
"core.EnergyMapTest": 75.6235,
"core.EnvPairPotentialTest": 73.6667,
"core.EnvSmoothEnergyTests": 947.663,
"core.EnzymeDatabaseIOTests": 6.85223,
"core.EtableEnergyTests": 3631.03,
"core.EtableFuncTests": 0.0249736,
"core.EtableUnModifyPotTests": 1521.44,
"core.FASTERAnnealerTests": 857.299,
"core.FASTERInteractionGraphTests": 1689.79,
"core.FA_ElecEnergyTests": 1089.54,
"core.FA_ElecEnergyTests_pre_talaris": 38.2908,
"core.FaMPEnvTest": 1545.15,
"core.FaMPSolvTest": 2192.65,
"core.FaMbEnvTest": 1409.74,
"core.FaMbSolvTest": 2008,
"core.FabConstraintTests": 6.87884,
"core.FadeFuncTests": 0.025051,
"core.FiberDiffractionEnergyTest": 1261.33,
"core.FieldTests": 6.85558,
"core.FillAUTOTaskOperationTests": 902.607,
"core.FixHisTautomerTest": 75.0396,
"core.FlatHarmonicFuncTests": 0.025263,
"core.FoldTreeSketch": 15.1137,
"core.FoldTreeTest": 164.692,
"core.FractionSelectorTests": 880.342,
"core.FragmentConstantLengthTest": 1516.93,
"core.FullatomCustomPairDistanceEnergyTests": 1224.68,
"core.FullatomDisulfideEnergyTests": 1741.2,
"core.GasteigerAtomTypeSetTests": 11.1913,
"core.GasteigerAtomTyperTests": 935.227,
"core.GaussianChainDoubleFuncTests": 0.0248545,
"core.GaussianChainFuncTests": 18.0874,
"core.GaussianChainGeneralFuncTests": 10.6809,
"core.GaussianChainQuadrupleFuncTests": 0.0248396,
"core.GaussianChainSingleFuncTests": 0.0250166,
"core.GaussianChainTripleFuncTests": 0.0249442,
"core.GaussianFuncTests": 10.6126,
"core.GeometricSolEnergyTests": 6.8408,
"core.GlycanResidueSelectorTest": 2466.64,
"core.GlycanTreeSetTests": 11781.8,
"core.HBNetEnergyTests": 1168.67,
"core.HBPolyTest": 19.7824,
"core.HBondDatabaseTest": 13.3026,
"core.HBondDerivTest": 18.5758,
"core.HBondEnergyTests": 2070.03,
"core.HBondGraphTests": 2653.52,
"core.HBondGraphUtilTests": 1021.72,
"core.HBondsFadeEnergy": 10.4531,
"core.HBondsForDemos": 877.583,
"core.HBondsTest": 1700.75,
"core.HPatchInteractionGraphTests": 2056.88,
"core.HRFDynamicsEnergyTests": 1050.14,
"core.HarmonicFuncTests": 10.4136,
"core.HbondMetricTests": 2747.34,
"core.HeaderInformationTests": 7.4254,
"core.HullTest": 46.694,
"core.IdealParametersDatabaseTests": 804.941,
"core.IdentityFuncTests": 0.0250428,
"core.ImplicitLipidInfo": 5390.7,
"core.ImportPoseOptionsTests": 10.8374,
"core.IndependentBBTorsionSRFDTests": 24.3504,
"core.InterGroupInterfaceByVectorSelectorTests": 1490.2,
"core.InteractionGraphFactoryTests": 1024.26,
"core.InterchainJumpSelectorTests": 915.841,
"core.InverseJumpFromInternalCoordsTests": 2200.62,
"core.InverseJumpTests": 3940.14,
"core.IsopeptideBondTests": 1200.46,
"core.JumpDownstreamSelectorTests": 887.137,
"core.JumpForResidueTests": 808.365,
"core.JumpIndexSelectorTests": 920.901,
"core.JumpUpstreamSelectorTests": 881.222,
"core.KarplusFuncTests": 0.0248917,
"core.KofNConstraintTests": 0.0248329,
"core.LK_BallEnergyTests": 1903.24,
"core.LK_DomeEnergyTests": 4725.09,
"core.LinMemInteractionGraphTests": 1333.62,
"core.LinearChainbreakEnergyTests": 872.412,
"core.LinearPenaltyFunctionTests": 0.0249993,
"core.LocalCoordinateConstraintTests": 0.0249637,
"core.LogicResidueSelectorTests": 979.126,
"core.LoopGraphTest": 933.063,
"core.MHCEpitopeConstraintTests": 816.098,
"core.MHCEpitopeEnergySetupTests_initialization": 160.754,
"core.MHCEpitopeEnergyTests_Scoring": 1315.73,
"core.MHCEpitopePredictorExternalTests": 7.42537,
"core.MHCEpitopePredictorMatrixTests": 7.16834,
"core.MHCEpitopePredictorPreLoadedTests": 7.61491,
"core.MHCEpitopePredictorSVMTests": 84.7674,
"core.MMAtomTypeSetTests": 7.43703,
"core.MMBondAngleEnergyTests": 1401.42,
"core.MMBondAngleLibraryTests": 7.5604,
"core.MMBondAngleScoreTests": 7.28369,
"core.MMTorsionEnergyTests": 1151.97,
"core.MMTorsionLibraryTests": 7.53154,
"core.MMTorsionScoreTests": 7.1006,
"core.MPHelicalityTests": 3444.87,
"core.MPResidueLipophilicityTests": 3114.55,
"core.MPSpanAngleEnergyTests": 2594.17,
"core.MPSpanInsertionEnergyTests": 3008.26,
"core.MPasymEZTests": 1201.67,
"core.MembraneGeometryTest": 9606.72,
"core.MembraneInfoTest": 2956.82,
"core.MergeAndSplitBehaviorsIOTests": 10.6312,
"core.MetricValueIOTest": 0.318699,
"core.MinMultiHarmonicFuncTests": 0.0249277,
"core.MinimizerTests": 9712.02,
"core.MirrorSymmetricConformationTests": 2004.54,
"core.MixtureFuncTests": 6.76646,
"core.MolFileIODataTests": 9579.72,
"core.MolFileIOReaderTests": 209.516,
"core.MoveMapFactoryTests": 950.345,
"core.MoveMapTest": 1155.44,
"core.NCAACentroidResidueTypeTests": 827.527,
"core.NCAADunbrackTests": 2299.21,
"core.NCAADunbrackTests_betanov15": 2289.09,
"core.NMRDummySpinlabelEnsembleTests": 1452.48,
"core.NMRSpinlabelTests": 1875.31,
"core.NMerSVMEnergyTests": 896.008,
"core.NPDHBondEnergyTests": 9903.94,
"core.NPDHBondInteractionGraphTests": 1949.86,
"core.NVlookupTests": 7.7975,
"core.NVscoreTests": 1000.12,
"core.NamedAngleConstraintTests": 896.828,
"core.NamedAtomPairConstraintTests": 921.458,
"core.NeighborhoodResidueSelectorTests": 1856.75,
"core.NetChargeEnergyTests_packer": 946.514,
"core.NetChargeEnergyTests_packer_symm": 989.518,
"core.NetChargeEnergyTests_tailfxns": 955.934,
"core.NomenclatureManagerTestsWCL": 18.0111,
"core.NomenclatureManagerTestsWOCL": 7.01378,
"core.NonResidueTypeConstraintTests": 0.0250431,
"core.NotJumpSelectorTests": 941.595,
"core.NotResidueSelectorTests": 917.649,
"core.NumNeighborsSelectorTests": 887.288,
"core.OccludedHbondSolEnergyTests": 1144.6,
"core.OmegaPreferencesFunctionTests": 10.5373,
"core.OmegaTetherTests": 1088.01,
"core.OperateOnResidueSubsetTests": 1036.18,
"core.OrJumpSelectorTests": 1007.26,
"core.OrResidueSelectorTests": 948.037,
"core.OrbitalTests": 10.4608,
"core.OrbitalTypeSetTests": 6.95732,
"core.OrbitalsEnergyTests": 1433.71,
"core.OrderedFragSetTest": 1015.49,
"core.PCSDataSymmetryTests": 11448.3,
"core.PCSDataTests": 16286.6,
"core.PCSMultiSetTests": 5194.44,
"core.PCSSingleSetSymmetryTests": 11817.8,
"core.PCSSingleSetTests": 10492.1,
"core.PDBInfoTests": 1309.42,
"core.PDBPoseMapTests": 14.1093,
"core.PDBReaderTests": 36.7723,
"core.PDBSilentStruct_Tests": 1194.29,
"core.PDB_IO": 2625.59,
"core.PDB_w_glycans_IO": 14940.7,
"core.PREDataTests": 4113.96,
"core.PREMultiSetTests": 3522.1,
"core.P_AA_EnergyTests": 1087.23,
"core.P_AA_pp_EnergyTests": 1134.55,
"core.P_AA_pp_Energy_SymGlyTests": 899.028,
"core.PackerTaskTests": 1906.54,
"core.PairEnergyTests": 989.993,
"core.PartialAtomIDTests": 0.0599776,
"core.ParticleSwarmMinimizerTests": 35.0461,
"core.PeptoidDesignTests": 12477.1,
"core.PeptoidResidueTypeTests": 861.202,
"core.PeriodicFuncTests": 0.0250097,
"core.PhiSelectorTests": 944.964,
"core.PolyaramidBackboneMinimizeTests": 837.188,
"core.PolylinearInterpolationTests": 1164.44,
"core.PoseFromPDBLoaderTests": 1159.99,
"core.PoseFromSFRBuilderTests": 2049.49,
"core.PoseIteratorTests": 825.024,
"core.PoseRNAUtilTests": 6.80351,
"core.PoseResidueTypeSetTests": 2746.25,
"core.PoseTests": 1837.69,
"core.PoseToStructFileRepConverterTests": 2989.42,
"core.PoseUtilTests": 7980.49,
"core.ProClosureEnergyTests": 990.666,
"core.ProClosureEnergyTests_noringclose": 894.568,
"core.ProteinSilentTests": 3013.31,
"core.RDCDataSymmetryTests": 1111.93,
"core.RDCDataTests": 1080.29,
"core.RDCMultiSetSymmetryTests": 1282.59,
"core.RDCMultiSetTests": 1321.83,
"core.RDMolToRestypeTests": 16.7115,
"core.RG_Energy_Tests": 1007.78,
"core.RNA_FA_ElecEnergyTests": 1072.67,
"core.RNA_ScoreFunctionTest": 787.112,
"core.RTConstraintTests": 892.737,
"core.RamaPreProEnergyTests": 1519.07,
"core.RamaPreProTests": 1917.91,
"core.RamaPreProTests_oligourea": 4614.88,
"core.RamaPreProTests_symmgly": 1171.57,
"core.Ramachandran2BTests": 180.436,
"core.RamachandranEnergyTests": 1487.25,
"core.RamachandranEnergy_SymGlyTests": 889.308,
"core.RamachandranPowerTest": 891.991,
"core.RamachandranTest": 924.344,
"core.RandomResidueSelectorTests": 878.357,
"core.RecordDefIOTests": 6.94332,
"core.ReferencePoseTests": 1070.95,
"core.ResFilterFactoryTests": 19.7425,
"core.ResLvlTaskOperationFactoryTests": 23.3445,
"core.ResfileReaderTests": 1118.62,
"core.Resfile_Silent": 1108.08,
"core.ResidueGraphTypesTests": 1090.9,
"core.ResidueInSequenceMotifSelectorTest": 1231.57,
"core.ResidueIndexSelectorTests": 970.532,
"core.ResidueNameSelectorTests": 1004.39,
"core.ResiduePDBInfoHasLabelSelectorTests": 881.35,
"core.ResiduePropertiesTests": 17.1187,
"core.ResiduePropertySelectorTests": 4510.59,
"core.ResidueRangesTests": 6.89661,
"core.ResidueSelectorFactoryTests": 212.371,
"core.ResidueTest": 5664.2,
"core.ResidueTypeBloatTests": 818.819,
"core.ResidueTypeConstraintTests": 0.0249777,
"core.ResidueTypeFinderTests": 998.801,
"core.ResidueTypeLinkingConstraintTests": 1643.94,
"core.ResidueTypeSetCacheConcurrencyTests": 54.1049,
"core.ResidueTypeSetTests": 1624.74,
"core.ResidueTypeTests": 1666.12,
"core.RestypeToRDMolTests": 837.893,
"core.RingClosureEnergyTests": 996.009,
"core.RingConformerIOTests": 6.87896,
"core.RingConformerSetTests": 14.7109,
"core.RingUtilityFunctionTests": 1121.48,
"core.RmsUtilTest": 2400.31,
"core.RotamerBuildingFunctionsTests": 846.461,
"core.RotamerConstraintDun2002Tests": 188.15,
"core.RotamerDotsTests": 1035.49,
"core.RotamerSetsTests": 19035,
"core.RotamerSubsetsTest": 1686.98,
"core.RotamerTrials": 1553.66,
"core.RotamerUtils": 7206.48,
"core.SCMinMinimizerMapTests": 1705.39,
"core.SCMinMultifuncTests": 1700.22,
"core.SOGFuncTests": 10.4067,
"core.SapConstraintEnergyTests": 13362.9,
"core.SasaTests": 1117.9,
"core.ScTests": 5267.9,
"core.ScalarWeightedFuncTests": 11.2424,
"core.ScoreFunctionFactoryTest": 1579.71,
"core.ScoreFunctionTest": 1443.67,
"core.ScoreFunctionUtilityTest": 6.87767,
"core.ScoreTest": 2941.25,
"core.ScoringSchemeTests": 10.4445,
"core.ScoringUtilTests": 3261.89,
"core.SecondaryStructureSelectorTests": 973.73,
"core.SelectedResidueCountMetricTests": 1117.84,
"core.SelectorLogicParserTests": 1038.99,
"core.SequenceAlignmentTests": 36.9105,
"core.SequenceMappingTests": 2292.42,
"core.SequenceMetricTests": 817.017,
"core.SequenceMotifUtilTests": 6.87767,
"core.SequenceProfileConstraintTests": 6.79575,
"core.SequenceProfile_Tests": 35.4003,
"core.SequenceSimilarityMetricTests": 987.306,
"core.SequenceSymmetricAnnealerTests": 16127.8,
"core.SequenceUtilTests": 21.6931,
"core.SigmoidFuncTests": 0.024772,
"core.SimpleInteractionGraphTests": 1871.34,
"core.SimpleMetricSelectorTests": 3345.28,
"core.SimpleMetricTests": 11248.1,
"core.SingleLigandRotamerLibraryTests": 807.706,
"core.SingleNCAARotamerLibraryTests": 10808.3,
"core.SingleNCAARotamerLibraryTests_Dun02": 4425.24,
"core.SingleNCAARotamerLibraryTests_Dun02_no_voronoi": 3898.7,
"core.SingleNCAARotamerLibraryTests_equivalency_no_voronoi": 3920.64,
"core.SingleNCAARotamerLibraryTests_equivalency_voronoi": 1560.84,
"core.SingleNCAARotamerLibraryTests_oligourea": 2787.78,
"core.SingleResidueRotamerLibraryTests": 810.777,
"core.SiteConstraintTests": 371.246,
"core.SkipViolFuncTests": 0.0249786,
"core.SliceResidueSelectorTests": 806.019,
"core.SoedingFuncTests": 0.0251679,
"core.SpanTest": 6.83647,
"core.SpanningTopologyTest": 4146.73,
"core.SplineFuncTests": 10.6774,
"core.SplitUnfoldedReferenceEnergyTests": 816.641,
"core.SplitUnfoldedTwoBodyPotentialTests": 806.64,
"core.SquareWell2FuncTests": 0.0252696,
"core.SquareWellFuncTests": 0.0252452,
"core.StoredRotamerLibrarySpecificationTests": 805.889,
"core.StructFileReaderOptionsTests": 10.8145,
"core.StructFileRepOptionsTests": 10.8255,
"core.StructFileRepTests": 1374.75,
"core.SugarBackboneEnergyTests": 1320.82,
"core.SumFuncTests": 0.0249593,
"core.SurfaceInteractionGraphTests": 1547.72,
"core.SurfacePotentialTests": 2031.17,
"core.SymmB3GBTests": 2456.11,
"core.SymmB3GTests": 2147.28,
"core.SymmDLBetasTests": 3162.88,
"core.SymmDLBetasTests_beta": 3601.69,
"core.SymmDLMinTests": 2763.37,
"core.SymmDLMin_NCAATests": 2827.49,
"core.SymmDLMin_NCAA_betaTests": 3337.66,
"core.SymmDLMin_beta_Tests": 3397.08,
"core.SymmDLMin_nmethyl_Tests": 2847.32,
"core.SymmDLMin_nmethyl_beta_Tests": 3588.44,
"core.SymmDLMin_peptoid_Tests": 11552.1,
"core.SymmDLMin_peptoid_beta_Tests": 12006.2,
"core.SymmDLTests": 2638.93,
"core.SymmDL_NCAATests": 2699.58,
"core.SymmDL_NCAA_betaTests": 3213.9,
"core.SymmDL_beta_Tests": 3266.81,
"core.SymmDL_nmethyl_Tests": 2721,
"core.SymmDL_peptoid_Tests": 11479.2,
"core.SymmDataLoaderTests": 8.00768,
"core.SymmGlyMinTests": 4121.38,
"core.SymmGlyMin_betanov15_Tests": 4442.36,
"core.SymmGlyTests": 5781.32,
"core.SymmGly_betanov15_Tests": 6481.87,
"core.SymmLinMemInteractionGraphTests": 2320.97,
"core.SymmMinimalistInteractionGraphTests": 1408.98,
"core.SymmetricConformationTests": 1127.78,
"core.SymmetricMinimizerTests": 2486.51,
"core.SymmetricRotamerTrials": 1409.03,
"core.SymmetricScoreTest": 2166.02,
"core.Symmetric_Binary_Protein_Silent_File_Tests": 1454.56,
"core.SymmetryUtilTests": 952.76,
"core.TableVsAnalyticEtableTests": 1738.45,
"core.TaskOperationFactoryTests": 616.319,
"core.TaskOperationsTests": 1301.29,
"core.TaskUtilTests": 14.5333,
"core.TestAsymmetricUnitSelector": 896.934,
"core.TestAutoDetectGlycanConnections": 13282.9,
"core.TestCyclicCoordinateDescentMath": 835.626,
"core.ThreeLetterCodeAmbiguityTests": 2161.97,
"core.TopOutFuncTests": 0.0250631,
"core.USOGFuncTests": 0.0250677,
"core.UltraLightResidueTests": 1862.46,
"core.UnfoldedStateEnergyTests": 817.545,
"core.UnfoldedStatePotentialTests": 813.385,
"core.UseBicubicInterpolationTest": 183.36,
"core.UtilTest": 453.592,
"core.VDW_EnergyTests": 948.81,
"core.ValidateBetaBinariesTests": 12449.1,
"core.ValidateDefaultBinariesTests": 12462,
"core.ValidateDun02BinariesTests": 1776.58,
"core.ValidateDun02CorrectBinariesTests": 1815.73,
"core.ValidateTalarisBinariesTests": 11648.2,
"core.VallTests": 14.4059,
"core.VariantTypeTests": 1001.33,
"core.VirtualResidueScoreTest": 1694.67,
"core.VirtualSelectorTests": 882.011,
"core.VoidsPenaltyEnergyTests": 2278.21,
"core.VoidsPenaltyEnergyTests_symm": 2227.77,
"core.VoidsPenaltyVoxelGridTests": 1049.9,
"core.VoidsPenaltyVoxelGridTests_rotamer_setup": 1542.19,
"core.VoidsPenaltyVoxelGridTests_rotamer_setup_2": 1990.24,
"core.WaterMediatedHbondMetricTests": 6663.25,
"core.YHHPlanarityEnergyTests": 957.887,
"core.atomtype_support_Tests": 821.237,
"core.bond_support_Tests": 815.832,
"core.component_reading_Tests": 2471.62,
"core.conformation_stored_restypes_tests": 1867.69,
"core.geometric_rename_Tests": 1380.77,
"core.glycan_PDBs_IO": 1219.04,
"core.lipid_PDBs_IO": 852.89,
"core.metalloprotein_import": 1221.83,
"core.min_pack_Tests": 7.64849,
"core.mmcif_IO": 2536.26,
"core.mmtf_IO": 8773.46,
"core.mmtf_util": 0.496375,
"core.residue_io_Tests": 785.748,
"core.residue_support_Tests": 931.921,
"core.rtmin_setup_Tests": 1849.44,
"core.single_mol_loading_Tests": 19.7782,
"devel.BackwardsDevelFilterCreatorTests": 0.0329727,
"devel.BackwardsDevelMoverCreatorTests": 0.0412492,
"devel.BuildSheetTests": 2104.19,
"devel.CoreResiduesPerElementFilterTests": 1415.28,
"devel.FoldabilityFilterTests": 2001.57,
"devel.MMTDriverTests": 1707.24,
"devel.MMTMinPackingJobTests": 2039.12,
"devel.MMTReceiverTests": 7.06762,
"devel.ZnHashTests": 3322.09,
"numeric.AngleFunctionTests": 0.0509822,
"numeric.BicubicSpline_tests": 0.454982,
"numeric.BoundingBoxTests": 0.039569,
"numeric.CalculatorTest": 1.06354,
"numeric.ClusteringTreeNodeTest": 0.0543765,
"numeric.ColorUtilTests": 0.0400399,
"numeric.ConversionsTests": 0.0278891,
"numeric.CubicSpline_tests": 0.0568755,
"numeric.DiscreteIntervalEncodingTreeTests": 42.1364,
"numeric.DistributionSamplerTest": 19.9304,
"numeric.EulerAnglesTests": 0.107599,
"numeric.FFTTests": 99.9003,
"numeric.GeneralizedEigenSolverTests": 0.373907,
"numeric.HistogramTests": 0.162932,
"numeric.HomogenousTransformTests": 0.176398,
"numeric.InterpolateTest": 0.0274938,
"numeric.KDTreeTests": 0.392157,
"numeric.MathMatrix_serialization": 6.64538,
"numeric.MathNTensorIOTests": 11.2171,
"numeric.MathNTensorTests": 0.0510387,
"numeric.MinimalClashHashTest": 956.659,
"numeric.MultiDimensionalHistogramTests": 0.0792376,
"numeric.NumericFunctionsTests": 0.0430817,
"numeric.NumericUtilTests": 0.0886883,
"numeric.OneDHistogramTests": 0.0590699,
"numeric.PCATests": 0.113448,
"numeric.PolycubicSplineTests": 135.213,
"numeric.ProbUtil": 0.110257,
"numeric.ProjectionAreaTests": 6.70746,
"numeric.QuaternionTests": 0.0473392,
"numeric.RandomSystemTests": 38.5375,
"numeric.ReservoirSamplingTests": 1.03998,
"numeric.RingPlaneFunctionsTests": 17.5447,
"numeric.SphericalVectorTests": 0.033454,
"numeric.StatisticsFunctionsTests": 0.102223,
"numeric.TricubicSplineTests": 0.191617,
"numeric.TwoDHistogramTests": 0.0604069,
"numeric.VoxelArrayTest": 0.10392,
"numeric.VoxelGridTests": 10.0825,
"numeric.WeightedReservoirSamplerTest": 0.714523,
"numeric.WeightedSamplerTests": 0.0632712,
"numeric.WrapAnglesTest": 0.0292869,
"numeric.XYZFunctionsTests": 0.320771,
"numeric.XYZMatrixTests": 0.099383,
"numeric.XYZTransformTests": 0.0668975,
"numeric.XYZTripleTests": 0.0561274,
"numeric.XYZVectorTests": 0.414858,
"numeric.agglomerative_hierarchical_clusteringTest": 0.175363,
"numeric.bicubic_interpolation_function_tests": 0.03469,
"numeric.bridgeObjectsTests": 926.726,
"numeric.minimum_bounding_ellipse": 10.5242,
"numeric.polycubic_catmull_rom_Tests": 18.1377,
"numeric.random_functionsTests": 0.041898,
"numeric.random_xyzTests": 6.71348,
"protocols.APClusterTest": 1845.2,
"protocols.AcceptToBestMoverTests": 10.3026,
"protocols.AchiralResidueTypeTests": 2191.25,
"protocols.AchiralResidueTypeTests_betanov15": 2185.64,
"protocols.AchiralResidueTypeTests_betanov16": 2294.07,
"protocols.AddChainBreakTests": 826.708,
"protocols.AddConstraintsToCurrentConformationMoverTests": 953.945,
"protocols.AddFlankingVirtualResiduesMoverTests": 902.659,
"protocols.AddHelixSequenceConstraintsMoverTests": 1507.33,
"protocols.AddMHCEpitopeConstraintMoverTests": 827.1,
"protocols.AddMPLigandMoverTest": 1838.41,
"protocols.AddMembraneMoverTest": 22743.1,
"protocols.AlignByResidueSelectorMoverTests": 984.082,
"protocols.AlignPDBInfoToSequencesTests": 13858.9,
"protocols.AlignPDBInfoToSequencesUtilTests": 6.95616,
"protocols.AlignResiduesMoverTests": 1056.07,
"protocols.AlignmentEnergyTests": 1606.98,
"protocols.AntibodyCDRGrafterTests": 3230.69,
"protocols.AntibodyConstraintTests": 1157.98,
"protocols.AntibodyDatabase": 2497.41,
"protocols.AntibodyDesignOptions": 2185.48,
"protocols.AntibodyInfoTests": 6560.97,
"protocols.AntibodyResidueSelectorsTest": 2447.47,
"protocols.AntibodySeqDesign": 6339.83,
"protocols.AntibodyTaskOps": 7377.31,
"protocols.ApplyChemistryMoverTests": 1135.23,
"protocols.ArithmeticTests": 1.15627,
"protocols.AtomCoordinateCstMoverTests": 2216.1,
"protocols.AtomPairConstraintGeneratorTests": 1877.34,
"protocols.AtomicDistanceFilterTests": 885.011,
"protocols.BackrubMoverTest": 1012.13,
"protocols.BackrubProtocolTests": 849.848,
"protocols.BackwardsProtocolsFeaturesReporterCreatorTests": 0.0638235,
"protocols.BackwardsProtocolsFilterCreatorTests": 0.133635,
"protocols.BasePairConstraintTests": 2069.01,
"protocols.BetaAlphaDisulfideTests": 1458.24,
"protocols.BetaAlphaDisulfide_betanov15_Tests": 1464.78,
"protocols.BetaAlphaDisulfide_betanov16_Tests": 1571.52,
"protocols.BetaSheetArchitectTests": 8.38383,
"protocols.BetaTurnDetectionFeaturesTest": 10.509,
"protocols.BlockwiseAnalysisMoverTests": 6.74769,
"protocols.BlockwisePoseCompMotifMetricTests": 924.539,
"protocols.BlockwiseShapeCompMetricTests": 1498.59,
"protocols.BluePrintTests": 6.92177,
"protocols.BranchAngleOptimizerTest": 1159.52,
"protocols.BridgeChainsMoverTests": 2399.92,
"protocols.BridgeTests": 857.591,
"protocols.BuildManagerTests": 832.603,
"protocols.BumpGridTests": 1418.04,
"protocols.CalculatorFilterTests": 876.201,
"protocols.ChromophoreDataReaderTests": 0.788608,
"protocols.ChunkTest": 14.7769,
"protocols.ClaimTests": 841.887,
"protocols.ClassicGridTests": 1260.44,
"protocols.ClearConstraintsMoverTests": 7.0701,
"protocols.ClusterTests": 1444.08,
"protocols.CoMTrack": 844.019,
"protocols.CompoundArchitectTests": 938.623,
"protocols.ConcatenatePosesTests": 952.654,
"protocols.ConnectRightTests": 829.652,
"protocols.ConnectionArchitectTests": 972.489,
"protocols.ConsensusLoopDesignOperationTests": 1024,
"protocols.ConservativeDesignOperationTests": 1430.21,
"protocols.ConstraintGeneratorFactoryTests": 0.680721,
"protocols.ConstraintScoreCutoffFilterTests": 7.78132,
"protocols.ConstraintsManagerTests": 894.673,
"protocols.ConstraintsMetricTests": 896.068,
"protocols.ContactMapTests": 1571.8,
"protocols.ContainerMoversTest": 14.2531,
"protocols.CoordSerializationTests": 1952.84,
"protocols.CoordinateConstraintGeneratorTests": 2285.18,
"protocols.CopyRotamerMoverTests": 875.554,
"protocols.CoreScorerTests": 929.487,
"protocols.CoupledMovesProtocolTests": 3852.9,
"protocols.CreateSequenceMotifOperationTests": 1368.73,
"protocols.CrosslinkerMoverTests": 829.023,
"protocols.CstInfoMoverTests": 7.27994,
"protocols.CycpepRigidBodyPermutationMoverTests": 1266.23,
"protocols.CycpepSymmetryFilterTests": 993.583,
"protocols.DDGBindOptEDataTests": 3127.91,
"protocols.DataLoaderTests": 1575.27,
"protocols.DdGScan": 1731.28,
"protocols.DdgFilter": 1709.77,
"protocols.DeNovoArchitectTests": 14.6581,
"protocols.DeNovoMotifArchitectTests": 13.871,
"protocols.DesignAroundOperationTests": 987.222,
"protocols.DihedralConstraintGeneratorTests": 1152.65,
"protocols.DirectSegmentLookupTests": 2315.57,
"protocols.DisulfideInsertionMoverTests": 2338.6,
"protocols.DisulfidizeMoverTests": 3932.8,
"protocols.DivideAndConquerorTests": 73.1839,
"protocols.DockingTest": 7761.05,
"protocols.DsspDesignOperationTests": 1041.13,
"protocols.DsspDisulfideLabelerMoverTests": 6.72415,
"protocols.DsspTests": 1146.98,
"protocols.DynamicAggregateFunctionTests": 3064.21,
"protocols.EmbeddingDefTest": 995.595,
"protocols.EmbeddingTest": 979.184,
"protocols.EnergyBasedClusteringTests": 842.813,
"protocols.EnergyBasedClusteringTests_alpha_aa": 3483.42,
"protocols.EnergyBasedClusteringTests_oligourea": 8716.13,
"protocols.EnergyJobSummaryTests": 2129.99,
"protocols.EnsureExclusivelySharedJumpMoverTests": 904.155,
"protocols.EntityCorrespondenceTests": 1098.9,
"protocols.EntityTests": 0.154731,
"protocols.EnvironmentJump": 865.303,
"protocols.EnvironmentTorsion": 884.475,
"protocols.EnzScoreFilterTests": 1311.66,
"protocols.EnzdesTaskOperations_Tests": 6.77344,
"protocols.ExtendChainMoverTests": 2183.72,
"protocols.ExtendedPoseBuilderTests": 2973.35,
"protocols.ExternalGeomSamplerTests": 0.12926,
"protocols.ExtraThreadingMover_Tests": 2006.61,
"protocols.FAVirtMoverTests": 2750.2,
"protocols.FastRelaxTests": 2508.47,
"protocols.FavorSequenceProfileTests": 1819.75,
"protocols.FeaturesReporterTests": 4810.86,
"protocols.FilterFactoryTests": 2588.54,
"protocols.FilterReportAsPoseExtraScoresMoverTests": 881.065,
"protocols.FilterValueMetricTests": 6.9923,
"protocols.FindConsensusSequenceTest": 2751.73,
"protocols.FitnessFilterTest": 1704.81,
"protocols.FlipChiralityMover": 909.991,
"protocols.FlipMoverTest": 2057.81,
"protocols.FoldArchitectMoverTests": 2201.29,
"protocols.FoldGraphTests": 19.4851,
"protocols.FoldTreeFromMotifTests": 3897.36,
"protocols.ForceDisulfidesMoverTests": 2091.72,
"protocols.FragmentCMTest": 844.218,
"protocols.FragmentCandidatesTests": 3464.32,
"protocols.FragmentLookupTests": 936.331,
"protocols.FragmentMoverTest": 1473.63,
"protocols.GeneralizedKIC_Tests": 1811.83,
"protocols.GeneralizedKIC_Tests_ramaprepro": 5527.73,
"protocols.GeneralizedKIC_Tests_ramaprepro_NCAA": 6845.58,
"protocols.GenerateMainchainPotentialTests": 7348.53,
"protocols.GenericSimulatedAnnealerTests": 2223.62,
"protocols.GlycosyltransferaseMoverTests": 1144.69,
"protocols.GraftSwitchMoverTests": 2292.77,
"protocols.GraftingTest": 3673.07,
"protocols.GreedyOptMutationMoverTests": 1719.69,
"protocols.GreenPackerTests": 1708.8,
"protocols.GrowLeftTests": 843.908,
"protocols.GrowRightTests": 846.758,
"protocols.GunnCostTest": 1048.04,
"protocols.HBNetMoverTests": 2176.87,
"protocols.HBPHelixAssignmentsTests": 7.16901,
"protocols.HBondCalculatorsTest": 2649.85,
"protocols.HBondSelectorTests": 9.20384,
"protocols.HasDisulfideFilterTests": 932.273,
"protocols.HasherTests": 0.623971,
"protocols.HelicalBundlePDBInfoTests": 1030.41,
"protocols.HelixPairingFilterTests": 1007.38,
"protocols.HighResEnsembleTests": 11.1835,
"protocols.HotspotHashingTests": 1060.64,
"protocols.HybridizeProtocolTests": 1594.6,
"protocols.HydrogenBondConstraintGeneratorTests": 1106.97,
"protocols.IfThenFilterTests": 935.872,
"protocols.InteractionGraphSummaryMetricTests": 1724.37,
"protocols.InterchainEnvEnergy": 272.42,
"protocols.InterchainPairEnergy": 280.283,
"protocols.InterfaceBuilderLoaderTests": 8.10547,
"protocols.InterfaceDdGMoverTests": 3200.49,
"protocols.InterfaceFeaturesTests": 19911.4,
"protocols.InterfaceHbondsFilterTests": 1667.2,
"protocols.InterfaceHydrophobicResidueContactsFilterTests": 3592.79,
"protocols.InterfaceInfoTests": 2592.31,
"protocols.InterfaceTest": 283.049,
"protocols.InvrotTreeTest": 1600.88,
"protocols.JD3NodeManagersTests": 35.4292,
"protocols.JD3PDBPoseInputterTests": 22.8949,
"protocols.JacobiLoopClosureMoverTests": 1571.64,
"protocols.JobGenealogistTests": 35.8506,
"protocols.JobOutputterTests": 18.8555,
"protocols.Json_based_cdr_detection_tests": 6.94785,
"protocols.JumpingTest": 2003.56,
"protocols.LabelPoseFromResidueSelectorMoverTests": 927.495,
"protocols.LigInterfaceConstraintsTest": 1204.96,
"protocols.LigandAreaLoaderTests": 8.97791,
"protocols.LigandConformerTests": 873.496,
"protocols.LigandMetalContactSelectorTests": 2820.4,
"protocols.LigandScoresUtilTests": 957.343,
"protocols.LimitAromaChi2OperationTests": 1911.05,
"protocols.LocalBackboneMoverTests": 2200.11,
"protocols.LongestContinuousApolarSegmentFilterTests": 935.138,
"protocols.LongestContinuousPolarSegmentFilterTests": 996.795,
"protocols.LoopAnalyzerMoverTests": 1238.57,
"protocols.LoopLengthChangeTests": 814.881,
"protocols.LoopModelerTests": 3503.13,
"protocols.LoopTest": 0.0302467,
"protocols.LoophashTest": 935.548,
"protocols.LoopsFileIOTest": 1037.66,
"protocols.LoopsFileLoaderTest": 7.35343,
"protocols.LoopsFoldTreeTest": 2281.34,
"protocols.LoopsTest": 1387.5,
"protocols.LoopsUtilTest": 1415.02,
"protocols.MPDockingSetupMoverTest": 1245.69,
"protocols.MPFastRelaxFoldTreeTest": 2620.31,
"protocols.MPIWorkPoolJobDistributorTests": 126.809,
"protocols.MPLipidAccessibilityTest": 8390.48,
"protocols.MPRangeRelaxMover": 2095.88,
"protocols.MRSClusteringTests": 13.8597,
"protocols.MRSJobQueenTests": 16062.7,
"protocols.MSDMoverTest": 1949.43,
"protocols.MakeCanonicalHelixTest": 826.785,
"protocols.MatchConsolidatorTests": 0.103011,
"protocols.MatchConstraintFileInfoTest": 876.068,
"protocols.MembraneEnergyLandscapeSamplerTest": 1447.94,
"protocols.MembranePositionFromTopologyMoverTest": 1210.66,
"protocols.MembraneUtil": 22938.5,
"protocols.MetalContactsConstraintGeneratorTests": 2779.17,
"protocols.MinimumInterAlphaDistanceMetricTests": 932.672,
"protocols.MonteCarloTests": 4253.3,
"protocols.MotifGraftMoverTests": 6969.19,
"protocols.MoveMapBuilderLoaderTests": 8.21933,
"protocols.MoverFactoryTests": 19186.9,
"protocols.MoverJobTests": 3393.71,
"protocols.MoversTest": 1285.76,
"protocols.MultiThreadedJobDistributorTests": 10.3982,
"protocols.MultiplePoseMoverTests": 2523.19,
"protocols.MultistateFitnessFunctionTest": 10.5628,
"protocols.MutateResidueTests": 1722.21,
"protocols.NMethylationTests": 1971.71,
"protocols.NMethylationTests_betanov15": 1963.45,
"protocols.NMethylationTests_betanov16": 2187.59,
"protocols.NativeSelectorTests": 997.581,
"protocols.Neighbor_CalculatorsTests": 1265.63,
"protocols.NewSEWINGHasherTests": 47.5042,
"protocols.NonlocalUtilTest": 1174.63,
"protocols.NubInitioLoopClosureMoverTests": 1954.8,
"protocols.NubInitioMoverTests": 8746.92,
"protocols.OccupiedSpaceHashTests": 0.267518,
"protocols.OmnibusDisulfideAnalysisLabelerMoverTests": 940.504,
"protocols.OopPuckMoverTest": 4515.3,
"protocols.OptimizeMembranePositionMoverTest": 4309.66,
"protocols.OptimizeProteinEmbeddingMoverTest": 1029.83,
"protocols.OversaturatedHbondAcceptorFilterTests": 1659.75,
"protocols.OversaturatedHbondAcceptorFilter_betanov15_Tests": 1691.01,
"protocols.OversaturatedHbondAcceptorFilter_betanov16_Tests": 1749.85,
"protocols.PCSEnergyTests": 2271.71,
"protocols.PCSMultiGridTest": 1269.39,
"protocols.PCSSingleGridTest": 1286.62,
"protocols.PCSTensorOptimizerTests": 1354.02,
"protocols.PDBPoseOutputterTests": 1933.31,
"protocols.PREEnergyTests": 2529.65,
"protocols.PREMoverTests": 2566,
"protocols.PackDaemonTest": 898.743,
"protocols.PairedSheetResidueSelectorTests": 963.031,
"protocols.ParamsDataStorageTests": 1592.65,
"protocols.ParsedProtocolTests": 824.665,
"protocols.PatchChemistryTests": 824.551,
"protocols.PeptideDeriverFilterTests": 7364.79,
"protocols.PeptideInternalHbondsMetricTests": 1741.52,
"protocols.PeptideStubMoverTests": 2390.86,
"protocols.PerturbBundleTests": 923.309,
"protocols.PlainSilentFileJobDistributorTest": 6.90245,
"protocols.PointMutScanDriverTests": 2179.01,
"protocols.PoseFromSequenceMoverTests": 1058.71,
"protocols.PoseManipulationTests": 1811.5,
"protocols.PreProlineFilterTests": 1522.77,
"protocols.PredockRotCenterTest": 1009.67,
"protocols.ProtLigEnsembleTests": 10.343,
"protocols.ProtectedConf": 832.884,
"protocols.ProteinInterfaceDesignOperationTests": 2113.46,
"protocols.ProteinInterfaceDesignTests": 1355.43,
"protocols.ProteinProteinInterfaceUpweighterTests": 1010.43,
"protocols.ProteinSCSamplerTests": 979.758,
"protocols.ProteinSilentReportTests": 1801.74,
"protocols.ProteinUpstreamBuilderTests": 239.356,
"protocols.PruneBuriedUnsatsOperationTests": 1613.24,
"protocols.PseudocontactShiftTests": 4292.63,
"protocols.PyMOLMoverTest": 25.8532,
"protocols.QueryDatabaseTests": 933.796,
"protocols.RDCEnergyTests": 1096.87,
"protocols.RNA_DeNovoOptimizerTest": 6247.35,
"protocols.RNA_DeNovoProtocolTest": 1216,
"protocols.RRComparerTests": 195.09,
"protocols.RRReporterSQLiteTests": 2038.53,
"protocols.RRReporterTests": 976.547,
"protocols.RamaMutationSelectorTests": 1264.45,
"protocols.RandomizeBBByRamaPreProTests": 1552.32,
"protocols.ReadPoseExtraScoreFilter": 0.352589,
"protocols.ReadResidueCoordinatesFromPDBTests": 22.7924,
"protocols.RegExManager_tests": 6.76287,
"protocols.Regex_based_cdr_detection_tests": 6.87411,
"protocols.RegionTest": 0.0290088,
"protocols.RelativeConnectRightTests": 843.025,
"protocols.RemodelConstraintGeneratorTest": 1583.46,
"protocols.RemoveMetalConnectionsMoverTests": 2231.23,
"protocols.RepackingRefinerTests": 1553.47,
"protocols.ReplicateFilterTests": 886.628,
"protocols.ResfileAutoRemapTest": 1744.55,
"protocols.ResidueCountFilterTests": 893.874,
"protocols.ResidueProbDesignOperationTests": 1514.18,
"protocols.ResidueTorsionRestraintsTest": 1968.96,
"protocols.ResidueTypeConstraintGeneratorTests": 2113.55,
"protocols.ResidueTypeConstraintMoverTests": 890.37,
"protocols.RestrictNonSurfaceToRepackingOperationTests": 1062.4,
"protocols.RestrictOperationsTests": 1136.95,
"protocols.RestrictToCDRH3LoopTest": 1057.62,
"protocols.RestrictToLoopsTests": 910.922,
"protocols.RigidBodyMoverTests": 4349.89,
"protocols.RigidChunkTest": 1048.66,
"protocols.RigidLigandBuilderTests": 1411.96,
"protocols.RingPlaneFlipMoverTests": 1144.98,
"protocols.RmsdFromResidueSelectorFilterTests": 955.264,
"protocols.RosettaScriptsJobQueenTests": 3319.35,
"protocols.RosettaScriptsParserTests": 3248.37,
"protocols.RotamerBoltzmannWeight2Tests": 1974.8,
"protocols.RotamerRecoveryTests": 10036.8,
"protocols.RotateJumpAxisMoverTests": 890.673,
"protocols.SandwichFeaturesTests": 1828.21,
"protocols.ScaffoldBuildPointTests": 892.003,
"protocols.ScoreFileOutputterTests": 53.7309,
"protocols.ScoreNormalizationTest": 838.972,
"protocols.ScoreTest": 874.206,
"protocols.ScoringGridLoaderTests": 14.6722,
"protocols.Scs_functor_filtering_tests": 35.2623,
"protocols.SecondaryStructureFilterTests": 909.445,
"protocols.SegmentInsertTests": 909.819,
"protocols.SegmentPairingTests": 18.0177,
"protocols.SegmentRebuildTests": 1005.69,
"protocols.SegmentSequenceProfileTests": 1000.99,
"protocols.SegmentSwapTests": 871.229,
"protocols.SegmentTests": 17.5432,
"protocols.SegmentedAtomPairConstraintGeneratorTests": 955.355,
"protocols.SequenceRecoveryMetricTests": 990.513,
"protocols.SetMembranePositionTest": 1800.74,
"protocols.SetSecStructEnergiesMoverTests": 1045.13,
"protocols.SetupDockingFoldTree": 2013.42,
"protocols.SetupMetalsMoverTests": 3395.05,
"protocols.SewAnythingTests": 2033.19,
"protocols.SewingHasherTests": 22.5803,
"protocols.ShearMoverTest": 2179.91,
"protocols.SheetConstraintGeneratorTests": 924.513,
"protocols.SheetTopologyFilterTest": 1063.46,
"protocols.ShowConstraintsFilterTests": 10.7758,
"protocols.SilentFilePoseInputterTests": 830.282,
"protocols.SilentFilePoseOutputterTests": 43.0202,
"protocols.SimpleCycpepPredictApplicationTests": 2396.44,
"protocols.SimpleCycpepPredictApplication_betanov15_Tests": 2373.6,
"protocols.SimpleCycpepPredictApplication_design_Tests": 2443.13,
"protocols.SimpleCycpepPredictApplication_design_betanov15_Tests": 2443.7,
"protocols.SimpleMetricProtocolsTests": 8651.37,
"protocols.SimpleThreadingMoverTests": 3695.79,
"protocols.SiteGridTests": 1087.02,
"protocols.SixDoFGridDockMoverTests": 17.9625,
"protocols.SmallMoverTest": 1986.23,
"protocols.SmallMoverTests": 911.914,
"protocols.SmartAssemblyTests": 2164.17,
"protocols.SnugDockProtocol_setup_ab_ag_foldtree_tests": 2330.04,
"protocols.SpartaTest": 2572.35,
"protocols.SpinAroundPartnerMoverTest": 4452.69,
"protocols.StandardJobQueenOverrideInputterTests": 219.927,
"protocols.StandardJobQueenOverrideOutputterTests": 956.927,
"protocols.StandardJobQueenTests": 249.859,
"protocols.StandardPoseJobSummaryTests": 2127.29,
"protocols.StartFromTests": 4556.96,
"protocols.StepWiseMinimizerTest": 1423.24,
"protocols.StepWiseMonteCarloTest": 1680.8,
"protocols.StepWiseMoveSelectorTest": 1049.36,
"protocols.StepWisePoseAlignerTest": 1889.37,
"protocols.StochasticFilterTests": 894.962,
"protocols.StoredResidueSubsetSelectorTests": 907.557,
"protocols.StructureDataFactoryTests": 1125.74,
"protocols.StructureDataObserverTests": 927.695,
"protocols.StructureDataTests": 1088.94,
"protocols.StructureStoreTests": 1026.36,
"protocols.SurfaceVectorLoaderTest": 6.83215,
"protocols.SwitchChainOrderMoverTests": 3328.21,
"protocols.SymmetricAddMembraneMoverTest": 1166.85,
"protocols.SymmetricCycpepAlignTests": 1222.86,
"protocols.TCRmodelGraftingTests": 2432.8,
"protocols.TCRmodelSeqParserTests": 6.85104,
"protocols.TaskAwareMinMoverTests": 1696.93,
"protocols.TaskSelectorTests": 941.684,
"protocols.TautomerizeAnomerMoverTests": 1237.65,
"protocols.TestCCDLoopClosureMover": 1414.3,
"protocols.Thioether_Helper_Tests": 4157.63,
"protocols.ThreadingMover_Tests": 2198.07,
"protocols.TiltMoverTest": 4171.8,
"protocols.TorsionBinIOTests": 6.83873,
"protocols.TorsionSamplingKinematicPerturberTests": 983.466,
"protocols.TotalSasaFilterTests": 1219.09,
"protocols.TransformIntoMembraneMoverTest": 2622.33,
"protocols.TransformTests": 2068.44,
"protocols.TranslationRotationMoverTest": 1267.11,
"protocols.TypesetMoversTests": 891.515,
"protocols.UniformRigidBody": 826.355,
"protocols.VarSolDRotamerDotsTest": 960.955,
"protocols.VicinitySamplingKinematicPerturberTests": 980.917,
"protocols.VoxelSetIteratorTests": 0.123254,
"protocols.WindowPoseCompMotifMetricTests": 932.824,
"protocols.WobbleMoverTest": 1511.4,
"protocols.XmlObjectsTests": 3101.22,
"protocols.cout_io": 1802.4,
"protocols.ddG": 1730.58,
"protocols.fold_tree_functions_Tests": 6.95483,
"protocols.hybridization_TMalign_Tests": 1688.38,
"protocols.orphan_restypes_tests": 1472.14,
"protocols.pHVariantTaskOperationTest": 910.989,
"protocols.packer_palette_compatibility_global_tests": 934.792,
"protocols.packer_palette_compatibility_tests": 1178.87,
"protocols.stepwise_modeler_rna_util_test": 947.537,
"utility.ArrayPoolTests": 0.0969021,
"utility.AutoKeyTests": 0.0282558,
"utility.BinaryUtilTests": 6.66595,
"utility.BitSetTests": 0.130884,
"utility.BitVectorTests": 0.0956904,
"utility.BufferedSignalHubTests": 0.0849631,
"utility.DatabaseSessionManagerTests": 1.18627,
"utility.DatingUtilitiesTests": 0.0597865,
"utility.DeepCopyOPTests": 0.0820419,
"utility.DeepCopyVector1Tests": 0.101695,
"utility.DenseBoolMapTests": 0.0503595,
"utility.DisjointSetsTests": 6.81873,
"utility.FactoryTests": 0.0490797,
"utility.FileContentsMapTests": 0.236483,
"utility.FileNameTests": 0.0449092,
"utility.FileSysUtilTests": 0.0327773,
"utility.GraphTests": 0.134416,
"utility.IZStreamTests": 0.11676,
"utility.IterUtilTest": 0.0741811,
"utility.Key4TupleTests": 0.0313397,
"utility.Key4VectorTests": 0.0326753,
"utility.KeyMapTests": 0.0779244,
"utility.KeyVectorTests": 0.0800781,
"utility.LexicographicalIteratorTests": 0.117523,
"utility.LowMemGraphTests": 0.253864,
"utility.MinMaxTest": 0.0494905,
"utility.OptionCollectionTests": 0.160741,
"utility.OrderedTupleTests": 0.0735547,
"utility.PathNameTests": 0.0585534,
"utility.PausableSignalHubTests": 0.0330532,
"utility.ReadWriteMutexTests": 0.0242485,
"utility.RecentHistoryQueueTests": 0.0496332,
"utility.RingDetectionTests": 24.8692,
"utility.SignalHubTests": 11.3527,
"utility.SimulateMPITests": 0.328204,
"utility.SmallKeyMapTests": 0.0806997,
"utility.SmallKeyVectorTests": 0.0774136,
"utility.SmallVector1_Tests": 0.0733916,
"utility.SortFunctionsTest": 0.0650895,
"utility.StringUtilTests": 0.467727,
"utility.TagTests": 1.69282,
"utility.TokenHubTests": 0.105245,
"utility.UToolsTests": 0.145968,
"utility.UTracerTests": 0.126991,
"utility.UserKeyTests": 0.0278446,
"utility.UtilityNumbersTests": 0.0256711,
"utility.Vector0Tests": 0.225048,
"utility.Vector1BoolTests": 0.0896479,
"utility.Vector1FunctionsTests": 0.0966865,
"utility.Vector1_Tests": 0.225057,
"utility.VectorLTests": 0.115523,
"utility.XMLSchemaGenerationTests": 2.89752,
"utility.XMLSchemaValidationTests": 0.642125,
"utility.ZipStreamTests": 0.0239936,
"utility.heapTests": 0.079702,
"utility.in_place_listTests": 0.0718582,
"utility.integer_mappingTests": 0.167633,
"utility.json_utilitiesTests": 21.3723,
"utility.make_shared_Tests": 0.0238001,
"utility.type_traits_Tests": 0.0255174
},
"summary": {
"failed": 9,
"failed_tests": [
"core:InverseJumpFromInternalCoordsTests:test_angles_with_zero_torsion3",
"core:InverseJumpFromInternalCoordsTests:test_angles_w_torsion",
"core:InverseJumpFromInternalCoordsTests:test_smooth_angle_sampling",
"core:InverseJumpFromInternalCoordsTests:test_angles_with_zero_torsion2",
"core:InverseJumpFromInternalCoordsTests:test_bind_to_CO",
"core:InverseJumpFromInternalCoordsTests:test_agreement_between_forwards_and_backwards_calculations",
"core:InverseJumpFromInternalCoordsTests:test_angles_with_zero_torsion",
"core:InverseJumpFromInternalCoordsTests:test_alignment_to_known_position",
"core:InverseJumpFromInternalCoordsTests:test_angles_w_torsion2"
],
"total": 4614
},
"tests": {
"apps:LigandDockTest:test_select_best_poses": {
"log": "",
"state": "passed"
},
"basic:CitationManagerTests:test_database_load": {
"log": "",
"state": "passed"
},
"basic:CmdlineOptionsOrderTests:test_options_order_just_cmdline": {
"log": "",
"state": "passed"
},
"basic:CmdlineOptionsOrderTests:test_options_order_just_flagsfiles": {
"log": "",
"state": "passed"
},
"basic:CmdlineOptionsOrderTests:test_options_order_just_one_file": {
"log": "",
"state": "passed"
},
"basic:CmdlineOptionsOrderTests:test_options_order_mixed": {
"log": "",
"state": "passed"
},
"basic:DatabaseResourceLocatorTests:test_DatabaseResourceLocator_query_sqlite_database": {
"log": "",
"state": "passed"
},
"basic:ExecuteTest:test_shell": {
"log": "",
"state": "passed"
},
"basic:FileSystemResourceLocatorTests:test_FileSystemResourceLocator_locate_file": {
"log": "",
"state": "passed"
},
"basic:HierarchicalDataMapTests:test_failed_lookups": {
"log": "",
"state": "passed"
},
"basic:HierarchicalDataMapTests:test_hierarchical_lookups": {
"log": "",
"state": "passed"
},
"basic:HierarchicalDataMapTests:test_optional_name_lookups": {
"log": "",
"state": "passed"
},
"basic:HierarchicalDataMapTests:test_successful_lookups": {
"log": "",
"state": "passed"
},
"basic:OptionsSystemTests:test_find_key_cl_error": {
"log": "",
"state": "passed"
},
"basic:OptionsSystemTests:test_find_key_cl_good": {
"log": "",
"state": "passed"
},
"basic:OptionsSystemTests:test_initialize_local_option_collection_from_global": {
"log": "",
"state": "passed"
},
"basic:OptionsSystemTests:test_set_value": {
"log": "",
"state": "passed"
},
"basic:ResourceLoaderFactoryTests:test_register_one_creator_twice_with_ResourceLoaderFactory": {
"log": "",
"state": "passed"
},
"basic:ResourceLoaderFactoryTests:test_register_one_creator_with_ResourceLoaderFactory": {
"log": "",
"state": "passed"
},
"basic:ResourceManagerTests:test_parse_resource_definition_file": {
"log": "",
"state": "passed"
},
"basic:ResourceManagerTests:test_parse_resource_definition_file_w_circular_dependencies": {
"log": "",
"state": "passed"
},
"basic:ResourceManagerTests:test_parse_resource_definition_file_w_multiple_dependencies": {
"log": "",
"state": "passed"
},
"basic:ResourceManagerTests:test_parse_resource_definition_w_dependency": {
"log": "",
"state": "passed"
},
"basic:ResourceManagerTests:test_schema_structure": {
"log": "",
"state": "passed"
},
"basic:SVDSolverTest:test_Solv_SLE_no_unique_solution": {
"log": "",
"state": "passed"
},
"basic:SVDSolverTest:test_Solv_SLE_with_unique_solution": {
"log": "",
"state": "passed"
},
"basic:StringResourceStreamTests:test_null": {
"log": "",
"state": "passed"
},
"core:AACompositionEnergyTests_10pctaro:test_energy_eval_ten_percent_aromatic": {
"log": "",
"state": "passed"
},
"core:AACompositionEnergyTests_1W1Y:test_energy_eval_one_trp_one_tyr": {
"log": "",
"state": "passed"
},
"core:AACompositionEnergyTests_1W:test_energy_eval_exactly_one_trp": {
"log": "",
"state": "passed"
},
"core:AACompositionEnergyTests_20pctpro:test_energy_eval_twenty_percent_pro": {
"log": "",
"state": "passed"
},
"core:AACompositionEnergyTests_20pctprofract:test_energy_eval_twenty_percent_pro_fract_ranges": {
"log": "",
"state": "passed"
},
"core:AACompositionEnergyTests_2WY:test_energy_eval_exactly_two_trportyr": {
"log": "",
"state": "passed"
},
"core:AACompositionEnergyTests_2aro:test_energy_eval_two_aromatics": {
"log": "",
"state": "passed"
},
"core:AACompositionEnergyTests_3ACPC:test_energy_eval_exactly_three_transACPC": {
"log": "",
"state": "passed"
},
"core:AACompositionEnergyTests_aliphnotpro:test_energy_eval_aliphatic_not_pro": {
"log": "",
"state": "passed"
},
"core:AACompositionEnergyTests_bools:test_energy_eval_complex_boolean_logic": {
"log": "",
"state": "passed"
},
"core:AACompositionEnergyTests_consttail:test_tailfunctions_const_lin": {
"log": "",
"state": "passed"
},
"core:AACompositionEnergyTests_interpolate_linear:test_interpolation_linear_tails": {
"log": "",
"state": "passed"
},
"core:AACompositionEnergyTests_linconsttail:test_tailfunctions_lin_const": {
"log": "",
"state": "passed"
},
"core:AACompositionEnergyTests_packer:test_energy_annealing": {
"log": "",
"state": "passed"
},
"core:AACompositionEnergyTests_quadratail:test_tailfunctions_quadratic": {
"log": "",
"state": "passed"
},
"core:AACompositionEnergyTests_quadratic_interpolation:test_interpolation_quadratic_tails": {
"log": "",
"state": "passed"
},
"core:AARepeatEnergyTests:test_energy_annealing": {
"log": "",
"state": "passed"
},
"core:AARepeatEnergyTests:test_energy_cases": {
"log": "",
"state": "passed"
},
"core:AARepeatEnergyTests:test_energy_eval": {
"log": "",
"state": "passed"
},
"core:ABEGOManagerTest:test_abego": {
"log": "",
"state": "passed"
},
"core:AltCodesIOTests:test_read_alternative_3_letter_codes_from_database_file": {
"log": "",
"state": "passed"
},
"core:AmberPeriodicFuncTests:test_serialize_AmberPeriodicFunc": {
"log": "",
"state": "passed"
},
"core:AmbiguousConstraintTests:test_serialize_AmbiguousConstraint": {
"log": "",
"state": "passed"
},
"core:AmbiguousNMRConstraintTests:test_serialize_AmbiguousNMRConstraint": {
"log": "",
"state": "passed"
},
"core:AmbiguousNMRDistanceConstraintTests:test_serialize_AmbiguousNMRDistanceConstraint": {
"log": "",
"state": "passed"
},
"core:AndJumpSelectorTests:test_AndJumpSelector_fail_parse_subtag": {
"log": "",
"state": "passed"
},
"core:AndJumpSelectorTests:test_AndJumpSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:AndJumpSelectorTests:test_AndJumpSelector_parse_my_tag_no_provided_selectors": {
"log": "",
"state": "passed"
},
"core:AndJumpSelectorTests:test_AndJumpSelector_parse_my_tag_selectors_not_in_datamap": {
"log": "",
"state": "passed"
},
"core:AndJumpSelectorTests:test_AndJumpSelector_parse_subtag_v1": {
"log": "",
"state": "passed"
},
"core:AndJumpSelectorTests:test_AndJumpSelector_parse_subtag_v2": {
"log": "",
"state": "passed"
},
"core:AndJumpSelectorTests:test_and_jump_selector_odd_1mod5_lots_of_jumps": {
"log": "",
"state": "passed"
},
"core:AndJumpSelectorTests:test_and_jump_selector_odd_1mod5_no_jumps": {
"log": "",
"state": "passed"
},
"core:AndResidueSelectorTests:test_AndResidueSelector_fail_parse_subtag": {
"log": "",
"state": "passed"
},
"core:AndResidueSelectorTests:test_AndResidueSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:AndResidueSelectorTests:test_AndResidueSelector_parse_my_tag_no_provided_selectors": {
"log": "",
"state": "passed"
},
"core:AndResidueSelectorTests:test_AndResidueSelector_parse_my_tag_selectors_not_in_datamap": {
"log": "",
"state": "passed"
},
"core:AndResidueSelectorTests:test_AndResidueSelector_parse_subtag": {
"log": "",
"state": "passed"
},
"core:AndResidueSelectorTests:test_and_residue_selector_odd_1mod5": {
"log": "",
"state": "passed"
},
"core:AngleConstraintTests:test_angle_constraint_clone": {
"log": "",
"state": "passed"
},
"core:AngleConstraintTests:test_angle_constraint_equality_operator": {
"log": "",
"state": "passed"
},
"core:AngleConstraintTests:test_angle_derivatives": {
"log": "",
"state": "passed"
},
"core:AngleConstraintTests:test_angle_score": {
"log": "",
"state": "passed"
},
"core:AngleConstraintTests:test_serialize_AngleConstraint": {
"log": "",
"state": "passed"
},
"core:AnnotatedSequenceTests:test_make_pose_from_saccharide_sequence": {
"log": "",
"state": "passed"
},
"core:AnnotatedSequenceTests:test_residue_types_from_saccharide_sequence": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_burial_sanity_check": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_packing_1ARG": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_packing_1ARG_bbMET": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_packing_4SER": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_packing_APA": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_NN": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_asn": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_super_NN": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_packing_IGReweight": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_packing_natural_corrections1_cross_chain_test": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_packing_proline_nh_test": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_packing_thr_ser_to_bb_test": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG_bbMET": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG_bbMET_O": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_scoring_4SER": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_scoring_APA": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_NN": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_asn": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_super_NN": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_scoring_natural_corrections1_test": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_scoring_proline_nh_test": {
"log": "",
"state": "passed"
},
"core:ApproximateBuriedUnsatPenaltyTests:test_scoring_thr_ser_to_bb_test": {
"log": "",
"state": "passed"
},
"core:ArgCationPiEnergyTests:test_arg_cation_pi": {
"log": "",
"state": "passed"
},
"core:AspartimidePenaltyEnergyTests:test_D_scoring": {
"log": "",
"state": "passed"
},
"core:AspartimidePenaltyEnergyTests:test_L_scoring": {
"log": "",
"state": "passed"
},
"core:AspartimidePenaltyEnergyTests:test_cyclic_geometry_scoring": {
"log": "",
"state": "passed"
},
"core:AtomICoorTests:test_atom_icoord_build": {
"log": "",
"state": "passed"
},
"core:AtomICoorTests:test_id_nonpoly": {
"log": "",
"state": "passed"
},
"core:AtomICoorTests:test_id_poly": {
"log": "",
"state": "passed"
},
"core:AtomPairConstraintTests:test_PDBno_readin": {
"log": "",
"state": "passed"
},
"core:AtomPairConstraintTests:test_atom_pair_constraint_clone": {
"log": "",
"state": "passed"
},
"core:AtomPairConstraintTests:test_atom_pair_constraint_equality_operator": {
"log": "",
"state": "passed"
},
"core:AtomPairConstraintTests:test_atom_pair_derivatives": {
"log": "",
"state": "passed"
},
"core:AtomPairConstraintTests:test_atom_pair_score": {
"log": "",
"state": "passed"
},
"core:AtomPairConstraintTests:test_atom_to_axis": {
"log": "",
"state": "passed"
},
"core:AtomPairConstraintTests:test_serialize_AtomPairConstraint": {
"log": "",
"state": "passed"
},
"core:AtomTests:test_atom_initialization": {
"log": "",
"state": "passed"
},
"core:AtomTests:test_atom_setters": {
"log": "",
"state": "passed"
},
"core:AtomTreeCollectionTests:test_atom_tree_collection_from_rotamer_set_ctor": {
"log": "",
"state": "passed"
},
"core:AtomTreeCollectionTests:test_atom_tree_collection_from_rotamer_sets_ctor": {
"log": "",
"state": "passed"
},
"core:AtomTreeCollectionTests:test_construct_residue_atom_tree_collection": {
"log": "",
"state": "passed"
},
"core:AtomTreeDiffTests:test_save_and_restore": {
"log": "",
"state": "passed"
},
"core:AtomTreeTests:test_atom_tree_assignment_operator": {
"log": "",
"state": "passed"
},
"core:AtomTreeTests:test_serialize_atom_tree": {
"log": "",
"state": "passed"
},
"core:AtomTypeDatabaseIOTests:test_atom_type_set_name": {
"log": "",
"state": "passed"
},
"core:AtomTypeSetTests:test_add_atom_types_from_command_line": {
"log": "",
"state": "passed"
},
"core:AtomTypeSetTests:test_atom_type_index": {
"log": "",
"state": "passed"
},
"core:AtomTypeSetTests:test_atom_type_set_name": {
"log": "",
"state": "passed"
},
"core:AtomTypeSetTests:test_n_atomtypes": {
"log": "",
"state": "passed"
},
"core:AtomTypeSetTests:test_operator_brackets": {
"log": "",
"state": "passed"
},
"core:AtomicDepthTests:test_AtomicDepth_depth_test_14": {
"log": "",
"state": "passed"
},
"core:AtomicDepthTests:test_AtomicDepth_depth_test_40": {
"log": "",
"state": "passed"
},
"core:AtomicDepthTests:test_AtomicDepth_depth_test_oob": {
"log": "",
"state": "passed"
},
"core:AtomicDepthTests:test_AtomicDepth_depth_test_polyleu_40": {
"log": "",
"state": "passed"
},
"core:AtomicDepthTests:test_AtomicDepth_depth_test_util_40": {
"log": "",
"state": "passed"
},
"core:AutomorphismTest:test_automorphism_counts": {
"log": "",
"state": "passed"
},
"core:BBTorsionSRFDTest:test_cartesian_coordinates": {
"log": "",
"state": "passed"
},
"core:BBTorsionSRFDTest:test_cartesian_coordinates_iter": {
"log": "",
"state": "passed"
},
"core:BackboneAATests:test_backbone_aa_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:BackboneAATests:test_backbone_aa_rama": {
"log": "",
"state": "passed"
},
"core:BackboneAATests:test_backbone_aa_rama_prepro": {
"log": "",
"state": "passed"
},
"core:BackboneStubConstraintTests:test_serialize_BackboneStubConstraint": {
"log": "",
"state": "passed"
},
"core:BackboneStubLinearConstraintTests:test_serialize_BackboneStubLinearConstraint": {
"log": "",
"state": "passed"
},
"core:BasicDesignTests:test_design_custom": {
"log": "",
"state": "passed"
},
"core:BasicDesignTests:test_design_custom_TF": {
"log": "",
"state": "passed"
},
"core:BasicDesignTests:test_design_rotamers": {
"log": "",
"state": "passed"
},
"core:BasicDesignTests:test_design_rotamers_TF": {
"log": "",
"state": "passed"
},
"core:BetaNov16WithAutoSetupMetalsTests:test_auto_setup_metals_with_ser_mn": {
"log": "",
"state": "passed"
},
"core:BigBinConstraintTests:test_read_def": {
"log": "",
"state": "passed"
},
"core:BigBinConstraintTests:test_serialize_BigBinConstraint": {
"log": "",
"state": "passed"
},
"core:BinSelectorTests:test_binselector_abin": {
"log": "",
"state": "passed"
},
"core:BinTransitionCalculatorTests:test_BinTransitionCalculator_p_iplus1_given_i": {
"log": "",
"state": "passed"
},
"core:BinTransitionCalculatorTests:test_BinTransitionCalculator_read": {
"log": "",
"state": "passed"
},
"core:BinTransitionCalculatorTests:test_BinTransitionData_trim_subbin_edges_and_rescale_subbin": {
"log": "",
"state": "passed"
},
"core:BinarySilentMultiposeTests:test_save_multiple_poses_and_restore": {
"log": "",
"state": "passed"
},
"core:BinarySilentMultiposeTests:test_save_multiple_poses_with_resize_and_restore": {
"log": "",
"state": "passed"
},
"core:BinarySilentTests:test_read_badly_formatted_silent_file": {
"log": "",
"state": "passed"
},
"core:BinarySilentTests:test_read_silent_file_with_rna_remark": {
"log": "",
"state": "passed"
},
"core:BinarySilentTests:test_save_and_restore": {
"log": "",
"state": "passed"
},
"core:BinarySilentTests:test_save_and_restore_centroid": {
"log": "",
"state": "passed"
},
"core:BinarySilentTests:test_save_and_restore_inserting_residues": {
"log": "",
"state": "passed"
},
"core:BlockSelectorTests:test_blockselector": {
"log": "",
"state": "passed"
},
"core:BondLengthsTests:test_bond_lengthsl": {
"log": "",
"state": "passed"
},
"core:BondedSelectorTests:test_BondedResidueSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:BondedSelectorTests:test_detects_adjacent_residues": {
"log": "",
"state": "passed"
},
"core:BondedSelectorTests:test_detects_declared_chemical_bonds": {
"log": "",
"state": "passed"
},
"core:BoundConstraintTests:test_bound_func": {
"log": "",
"state": "passed"
},
"core:BoundConstraintTests:test_serialize_BoundFunc": {
"log": "",
"state": "passed"
},
"core:BoundConstraintTests:test_serialize_OffsetPeriodicBoundFunc": {
"log": "",
"state": "passed"
},
"core:BoundConstraintTests:test_serialize_PeriodicBoundFunc": {
"log": "",
"state": "passed"
},
"core:BoundConstraintTests:test_show_definition": {
"log": "",
"state": "passed"
},
"core:BuriedUnsatPenaltyGraphSymmetricTests:test_graph_setup": {
"log": "",
"state": "passed"
},
"core:BuriedUnsatPenaltyGraphSymmetricTests:test_smallpose_graph_setup": {
"log": "",
"state": "passed"
},
"core:BuriedUnsatPenaltyGraphTests:test_graph_setup": {
"log": "",
"state": "passed"
},
"core:BuriedUnsatPenaltyGraphTests:test_smallpose_graph_setup": {
"log": "",
"state": "passed"
},
"core:BuriedUnsatPenaltySymmetricTests:test_simple_symmetric_scoring": {
"log": "",
"state": "passed"
},
"core:BuriedUnsatPenaltySymmetricTests:test_simple_symmetric_scoring2": {
"log": "",
"state": "passed"
},
"core:BuriedUnsatPenaltySymmetricTests:test_symmetric_packing": {
"log": "",
"state": "passed"
},
"core:BuriedUnsatPenaltySymmetricTests:test_symmetric_setup_for_packing": {
"log": "",
"state": "passed"
},
"core:BuriedUnsatPenaltyTests:test_packing": {
"log": "",
"state": "passed"
},
"core:BuriedUnsatPenaltyTests:test_packing_steps": {
"log": "",
"state": "passed"
},
"core:BuriedUnsatPenaltyTests:test_setup_for_packing": {
"log": "",
"state": "passed"
},
"core:BuriedUnsatPenaltyTests:test_simple_scoring": {
"log": "",
"state": "passed"
},
"core:CCS_IMMSEnergyTests:test_ccs_imms": {
"log": "",
"state": "passed"
},
"core:CHIEnergyFunctionTests:test_CHI_energy_derivatives": {
"log": "",
"state": "passed"
},
"core:CHIEnergyFunctionTests:test_CHI_energy_function": {
"log": "",
"state": "passed"
},
"core:CHIEnergyFunctionTests:test_CHI_sampling_data": {
"log": "",
"state": "passed"
},
"core:CachableDataTypeTests:test_get_name": {
"log": "",
"state": "passed"
},
"core:CacheableResidueTypeSetsTests:test_setting": {
"log": "",
"state": "passed"
},
"core:CalculatorMetricsTests:test_calculatormetric": {
"log": "",
"state": "passed"
},
"core:CalculatorMetricsTests:test_parsing": {
"log": "",
"state": "passed"
},
"core:CalculatorMetricsTests:test_schema": {
"log": "",
"state": "passed"
},
"core:CarbohydrateDatabaseIOTests:test_read_codes_and_roots_from_database_file": {
"log": "",
"state": "passed"
},
"core:CarbohydrateDatabaseIOTests:test_read_linkage_conformers_from_database_file": {
"log": "",
"state": "passed"
},
"core:CarbohydrateDatabaseIOTests:test_read_nomenclature_table_from_database_file": {
"log": "",
"state": "passed"
},
"core:CarbohydrateDatabaseIOTests:test_read_ring_sizes_and_morphemes_from_database_file": {
"log": "",
"state": "passed"
},
"core:CarbohydrateInfoManagerTests:test_linkage_conformer_data_access": {
"log": "",
"state": "passed"
},
"core:CarbohydrateInfoTests:test_CarbohydrateInfo_branch_point": {
"log": "",
"state": "passed"
},
"core:CarbohydrateInfoTests:test_CarbohydrateInfo_last_carbon_in_ring": {
"log": "",
"state": "passed"
},
"core:CarbohydrateInfoTests:test_Pose_chain_sequence_w_polysaccharide": {
"log": "",
"state": "passed"
},
"core:CarbohydrateInfoTests:test_Pose_chi_w_polysaccharide": {
"log": "",
"state": "passed"
},
"core:CarbohydrateInfoTests:test_Pose_phi_psi_omega_w_polysaccharide": {
"log": "",
"state": "passed"
},
"core:CarbohydratePoseIOTests:test_sugar_modifications_from_suffix": {
"log": "",
"state": "passed"
},
"core:CarbohydratePoseUtilityFunctionTests:test_TorsionID_query_functions": {
"log": "",
"state": "passed"
},
"core:CarbohydratePoseUtilityFunctionTests:test_exocyclic_detection": {
"log": "",
"state": "passed"
},
"core:CarbohydratePoseUtilityFunctionTests:test_find_seqpos_of_saccharides_relatives": {
"log": "",
"state": "passed"
},
"core:CarbohydratePoseUtilityFunctionTests:test_get_downstream_residue_that_this_torsion_moves": {
"log": "",
"state": "passed"
},
"core:CarbohydratePoseUtilityFunctionTests:test_get_glycosidic_TorsionIDs": {
"log": "",
"state": "passed"
},
"core:CarbohydratePoseUtilityFunctionTests:test_get_glycosidic_bond_residues": {
"log": "",
"state": "passed"
},
"core:CarbohydratePoseUtilityFunctionTests:test_get_linkage_position_of_saccharide_residue": {
"log": "",
"state": "passed"
},
"core:CarbohydratePoseUtilityFunctionTests:test_get_non_NU_TorsionID_from_AtomIDs": {
"log": "",
"state": "passed"
},
"core:CarbohydratePoseUtilityFunctionTests:test_get_reference_atoms": {
"log": "",
"state": "passed"
},
"core:CarbohydratePoseUtilityFunctionTests:test_glycan_branch": {
"log": "",
"state": "passed"
},
"core:CarbohydratePoseUtilityFunctionTests:test_glycan_iupac_movemap_setup": {
"log": "",
"state": "passed"
},
"core:CarbohydratePoseUtilityFunctionTests:test_glycan_leafs": {
"log": "",
"state": "passed"
},
"core:CarbohydratePoseUtilityFunctionTests:test_glycan_movemap_setup": {
"log": "",
"state": "passed"
},
"core:CarbohydratePoseUtilityFunctionTests:test_glycan_trimming": {
"log": "",
"state": "passed"
},
"core:CarbohydratePoseUtilityFunctionTests:test_glycosylate_pose": {
"log": "",
"state": "passed"
},
"core:CarbohydrateScoringDatabaseIOTests:test_read_Gaussian_parameters_from_database_file": {
"log": "",
"state": "passed"
},
"core:CarbohydrateScoringUtilityFunctionTests:test_function_assignment_based_on_type_of_linakge": {
"log": "",
"state": "passed"
},
"core:CarbohydrateStereochemTests:test_rings_and_stereochemistries": {
"log": "",
"state": "passed"
},
"core:CarbohydrateStereochemTests:test_virtual_atom_placement": {
"log": "",
"state": "passed"
},
"core:CarbonHBondEnergyTests:test_chbonds_deriv_check_matches_trunk_r38117": {
"log": "",
"state": "passed"
},
"core:CarbonHBondEnergyTests:test_chbonds_deriv_check_w_full_torsional_flexibility": {
"log": "",
"state": "passed"
},
"core:CartGridTest:test_grid_basics": {
"log": "",
"state": "passed"
},
"core:CartGridTest:test_grid_json_serialization": {
"log": "",
"state": "passed"
},
"core:CartesianBondedEnergyBBDepTests:test_cartbonded_deriv_check_w_total_flexibility": {
"log": "",
"state": "passed"
},
"core:CartesianBondedEnergyBBDepTests:test_cartbonded_start_score_start_func_match_w_total_flexibility": {
"log": "",
"state": "passed"
},
"core:CartesianBondedEnergyBBDepTests:test_eval_energy": {
"log": "",
"state": "passed"
},
"core:CartesianBondedEnergyTests:test_cartbonded_deriv_check_w_total_flexibility": {
"log": "",
"state": "passed"
},
"core:CartesianBondedEnergyTests:test_cartbonded_start_score_start_func_match_w_total_flexibility": {
"log": "",
"state": "passed"
},
"core:CartesianBondedEnergyTests:test_eval_energy": {
"log": "",
"state": "passed"
},
"core:CenRotModelEnergyTests:test_cen_rot_atomtree_min": {
"log": "",
"state": "passed"
},
"core:CenRotModelEnergyTests:test_cen_rot_cart_min": {
"log": "",
"state": "passed"
},
"core:CenRotModelEnergyTests:test_cen_rot_dun": {
"log": "",
"state": "passed"
},
"core:CenRotModelEnergyTests:test_cen_rot_pair_env_energy": {
"log": "",
"state": "passed"
},
"core:CenRotModelEnergyTests:test_cen_rot_repack": {
"log": "",
"state": "passed"
},
"core:CenRotModelEnergyTests:test_cen_rot_vdw": {
"log": "",
"state": "passed"
},
"core:ChainSelectorTests:test_ChainSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:ChainSelectorTests:test_ChainSelector_parse_my_tag_no_provided_chains": {
"log": "",
"state": "passed"
},
"core:ChainSelectorTests:test_ChainSelector_parse_my_tag_w_two_chains": {
"log": "",
"state": "passed"
},
"core:ChainSelectorTests:test_chain_selector_chain_1_select_all": {
"log": "",
"state": "passed"
},
"core:ChainSelectorTests:test_chain_selector_chain_1_select_half": {
"log": "",
"state": "passed"
},
"core:ChainSelectorTests:test_chain_selector_chain_1and2_select_all": {
"log": "",
"state": "passed"
},
"core:ChainSelectorTests:test_chain_selector_chain_A_select_all": {
"log": "",
"state": "passed"
},
"core:ChainSelectorTests:test_chain_selector_chain_A_select_half": {
"log": "",
"state": "passed"
},
"core:ChainSelectorTests:test_chain_selector_chain_AandB_select_all": {
"log": "",
"state": "passed"
},
"core:ChainbreakEnergyTests:test_chainbreak_cyclic_geometry_deriv_check": {
"log": "",
"state": "passed"
},
"core:ChainbreakEnergyTests:test_chainbreak_deriv_check": {
"log": "",
"state": "passed"
},
"core:ChainbreakEnergyTests:test_chainbreak_deriv_check_with_sugars": {
"log": "",
"state": "passed"
},
"core:ChainbreakEnergyTests:test_chainbreak_n_methylation_cyclic_geometry_deriv_check": {
"log": "",
"state": "passed"
},
"core:ChainbreakEnergyTests:test_chainbreak_peptoid_cyclic_geometry_deriv_check": {
"log": "",
"state": "passed"
},
"core:ChainbreakEnergyTests:test_chainbreak_proline_cyclic_geometry_deriv_check": {
"log": "",
"state": "passed"
},
"core:Chains62Tests:test_read_62_chain_pdb": {
"log": "",
"state": "passed"
},
"core:CharmmPeriodicFuncTests:test_serialize_CharmmPeriodicFunc": {
"log": "",
"state": "passed"
},
"core:ChemistryNamespaceUtilityFunctionTests:test_is_mainchain_torsion_also_ring_torsion": {
"log": "",
"state": "passed"
},
"core:CircularGeneral1D_FuncTests:test_serialize_CircularGeneral1D_Func": {
"log": "",
"state": "passed"
},
"core:CircularHarmonicFuncTests:test_serialize_CircularHarmonicFunc": {
"log": "",
"state": "passed"
},
"core:CircularPowerFuncTests:test_serialize_CircularPowerFunc": {
"log": "",
"state": "passed"
},
"core:CircularSigmoidalFuncTests:test_serialize_CircularSigmoidalFunc": {
"log": "",
"state": "passed"
},
"core:CircularSplineFuncTests:test_serialize_CircularSplineFunc": {
"log": "",
"state": "passed"
},
"core:ClashBasedRepackShellTests:test_xml_tag": {
"log": "",
"state": "passed"
},
"core:ClashBasedShellSelectorTests:test_add_clashes_to_shell": {
"log": "",
"state": "passed"
},
"core:ClashBasedShellSelectorTests:test_bool_mask_from_resnums": {
"log": "",
"state": "passed"
},
"core:ClashBasedShellSelectorTests:test_bool_mask_from_task": {
"log": "",
"state": "passed"
},
"core:ClashBasedShellSelectorTests:test_is_sc_xx_clash": {
"log": "",
"state": "passed"
},
"core:ClashBasedShellSelectorTests:test_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:ClashBasedShellSelectorTests:test_resnums_from_bool_mask": {
"log": "",
"state": "passed"
},
"core:ClashBasedShellSelectorTests:test_resnums_from_task": {
"log": "",
"state": "passed"
},
"core:ClashBasedShellSelectorTests:test_selections": {
"log": "",
"state": "passed"
},
"core:ClashBasedShellSelectorTests:test_task_from_bool_mask": {
"log": "",
"state": "passed"
},
"core:ClashBasedShellSelectorTests:test_task_from_resnums": {
"log": "",
"state": "passed"
},
"core:CloseContactResidueSelectorTests:test_CloseContactResidueSelector_parse_my_tag_selector": {
"log": "",
"state": "passed"
},
"core:ConfluentSelectorTests:test_confluentselector": {
"log": "",
"state": "passed"
},
"core:ConformationAtomTest:test_ConformationAtom_atomtype_constructor": {
"log": "",
"state": "passed"
},
"core:ConformationAtomTest:test_ConformationAtom_copy_constructor": {
"log": "",
"state": "passed"
},
"core:ConformationAtomTest:test_ConformationAtom_default_constructor": {
"log": "",
"state": "passed"
},
"core:ConformationAtomTest:test_ConformationAtom_type_getter": {
"log": "",
"state": "passed"
},
"core:ConformationAtomTest:test_ConformationAtom_type_setter": {
"log": "",
"state": "passed"
},
"core:ConformationAtomTest:test_ConformationAtom_xyz_getter": {
"log": "",
"state": "passed"
},
"core:ConformationAtomTest:test_ConformationAtom_xyz_setter": {
"log": "",
"state": "passed"
},
"core:ConformationTests:test_Conformation_ResidueTypeSet_clone": {
"log": "",
"state": "passed"
},
"core:ConformationTests:test_Conformation_backbone_torsion_angle_atoms_cutpoint": {
"log": "",
"state": "passed"
},
"core:ConformationTests:test_Conformation_backbone_torsion_angle_atoms_oligourea": {
"log": "",
"state": "passed"
},
"core:ConformationTests:test_Conformation_observer": {
"log": "",
"state": "passed"
},
"core:ConformationTests:test_Conformation_resolve_partial_atom_id_dslf": {
"log": "",
"state": "passed"
},
"core:ConformationTests:test_Conformation_resolve_partial_atom_id_peptide": {
"log": "",
"state": "passed"
},
"core:ConformationTests:test_inter_residue_connection_partner": {
"log": "",
"state": "passed"
},
"core:ConformationTests:test_is_bonded": {
"log": "",
"state": "passed"
},
"core:ConformationTests:test_simple_conformation": {
"log": "",
"state": "passed"
},
"core:ConformationUtilityFunctionTests:test_find_bond_torsion_with_nearest_orientation": {
"log": "",
"state": "passed"
},
"core:ConformationUtilityFunctionTests:test_position_of_atom_on_ring": {
"log": "",
"state": "passed"
},
"core:ConformationUtilityFunctionTests:test_residue_from_name": {
"log": "",
"state": "passed"
},
"core:ConsensusSequenceParserTests:test_get_3_letter_codes_from_NA_consensus_sequence": {
"log": "",
"state": "passed"
},
"core:ConsensusSequenceParserTests:test_get_3_letter_codes_from_peptide_consensus_sequence": {
"log": "",
"state": "passed"
},
"core:ConstantConstraintTests:test_serialize_ConstantConstraint": {
"log": "",
"state": "passed"
},
"core:ConstantFuncTests:test_serialize_ConstantFunc": {
"log": "",
"state": "passed"
},
"core:ConstraintIOTests:test_constraint_read_in": {
"log": "",
"state": "passed"
},
"core:ConstraintSetRemappingTests:test_constraint_set_remapping": {
"log": "",
"state": "passed"
},
"core:ConstraintSetTests:test_constraints_deep_clone": {
"log": "",
"state": "passed"
},
"core:ConstraintSetTests:test_constraints_shallow_copy_in_assignment_op": {
"log": "",
"state": "passed"
},
"core:ConstraintSetTests:test_constraints_shallow_copy_in_copy_ctor": {
"log": "",
"state": "passed"
},
"core:ConstraintSetTests:test_constraintset_assignment_operator_1": {
"log": "",
"state": "passed"
},
"core:ConstraintSetTests:test_constraintset_assignment_operator_2": {
"log": "",
"state": "passed"
},
"core:ConstraintSetTests:test_constraintset_assignment_operator_3": {
"log": "",
"state": "passed"
},
"core:ConstraintSetTests:test_constraintset_assignment_operator_4": {
"log": "",
"state": "passed"
},
"core:ConstraintSetTests:test_constraintset_assignment_operator_5": {
"log": "",
"state": "passed"
},
"core:ConstraintSetTests:test_serialize_constraint_set": {
"log": "",
"state": "passed"
},
"core:ConstraintUtilTests:test_add_constraints_from_cmdline": {
"log": "",
"state": "passed"
},
"core:ConstraintUtilTests:test_add_constraints_from_cmdline_to_pose": {
"log": "",
"state": "passed"
},
"core:ConstraintUtilTests:test_add_constraints_from_cmdline_to_scorefxn": {
"log": "",
"state": "passed"
},
"core:ConstraintUtilTests:test_add_fa_constraints_from_cmdline": {
"log": "",
"state": "passed"
},
"core:ConstraintUtilTests:test_add_fa_constraints_from_cmdline_to_pose": {
"log": "",
"state": "passed"
},
"core:ConstraintUtilTests:test_add_fa_constraints_from_cmdline_to_scorefxn": {
"log": "",
"state": "passed"
},
"core:ConstraintUtilTests:test_exponential_functions": {
"log": "",
"state": "passed"
},
"core:ConstraintUtilTests:test_gaussian_functions": {
"log": "",
"state": "passed"
},
"core:ConstraintUtilTests:test_get_cst_fa_file_option": {
"log": "",
"state": "passed"
},
"core:ConstraintUtilTests:test_get_cst_file_option": {
"log": "",
"state": "passed"
},
"core:ConstraintUtilTests:test_merge_constraints_from_cmdline": {
"log": "",
"state": "passed"
},
"core:ConstraintUtilTests:test_merge_constraints_from_cmdline_to_pose": {
"log": "",
"state": "passed"
},
"core:ConstraintUtilTests:test_merge_constraints_from_cmdline_to_scorefxn": {
"log": "",
"state": "passed"
},
"core:ConstraintUtilTests:test_merge_fa_constraints_from_cmdline": {
"log": "",
"state": "passed"
},
"core:ConstraintUtilTests:test_merge_fa_constraints_from_cmdline_to_pose": {
"log": "",
"state": "passed"
},
"core:ConstraintUtilTests:test_merge_fa_constraints_from_cmdline_to_scorefxn": {
"log": "",
"state": "passed"
},
"core:ConstraintsEnergyTests:test_atom_tree_minimize_with_dist_cst": {
"log": "",
"state": "passed"
},
"core:ConstraintsEnergyTests:test_atom_tree_minimize_with_dist_cst_in_fixed_domain": {
"log": "",
"state": "passed"
},
"core:ConstraintsEnergyTests:test_atom_tree_minimize_with_interresidue_angle_cst": {
"log": "",
"state": "passed"
},
"core:ConstraintsEnergyTests:test_atom_tree_minimize_with_intraresidue_dist_cst": {
"log": "",
"state": "passed"
},
"core:ConstraintsEnergyTests:test_atom_tree_minimize_with_threebody_angle_cst": {
"log": "",
"state": "passed"
},
"core:ContactOrderEnergy_Tests:test_eval_energy": {
"log": "",
"state": "passed"
},
"core:CoordinateConstraintTests:test_serialize_CoordinateConstraint": {
"log": "",
"state": "passed"
},
"core:CopyDofsTest:test_copy_dofs_into_extended": {
"log": "",
"state": "passed"
},
"core:CoreKinematicsUtilTests:test_get_foldtree_which_partitions": {
"log": "",
"state": "passed"
},
"core:CoreKinematicsUtilTests:test_jump_which_partitions": {
"log": "",
"state": "passed"
},
"core:CountViolFuncTests:test_serialize_CountViolFunc": {
"log": "",
"state": "passed"
},
"core:CtermAmidationTests:test_cterm_amidation_on_each_aa": {
"log": "",
"state": "passed"
},
"core:CtermAmidationTests:test_cterm_amidation_on_each_aa_notermini": {
"log": "",
"state": "passed"
},
"core:CustomRealValueMetricTests:test_custom_real_value_metric": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests:test_cyclic_permutation_cart_bonded": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests:test_cyclic_permutation_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests:test_cyclic_permutation_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests:test_cyclic_permutation_fa_atr": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests:test_cyclic_permutation_fa_dun": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests:test_cyclic_permutation_fa_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests:test_cyclic_permutation_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests:test_cyclic_permutation_fa_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests:test_cyclic_permutation_fa_sol": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests:test_cyclic_permutation_hbonds": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests:test_cyclic_permutation_omega": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests:test_cyclic_permutation_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests:test_cyclic_permutation_pro_close": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests:test_cyclic_permutation_rama": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests:test_cyclic_permutation_rama_prepro": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests:test_cyclic_permutation_talaris2014": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests:test_cyclic_permutation_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_cart_bonded": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_fa_atr": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_fa_dun": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_fa_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_fa_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_fa_sol": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_hbonds": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_omega": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_pro_close": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_rama": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_rama_prepro": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_talaris2014": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChainTests:test_cyclic_permutation_cart_bonded": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChainTests:test_cyclic_permutation_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChainTests:test_cyclic_permutation_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_atr": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_dun": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_sol": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChainTests:test_cyclic_permutation_hbonds": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChainTests:test_cyclic_permutation_omega": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChainTests:test_cyclic_permutation_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChainTests:test_cyclic_permutation_pro_close": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChainTests:test_cyclic_permutation_rama": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChainTests:test_cyclic_permutation_rama_prepro": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChainTests:test_cyclic_permutation_talaris2014": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChainTests:test_cyclic_permutation_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_cart_bonded": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_atr": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_dun": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_sol": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_hbonds": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_omega": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_pro_close": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_rama": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_rama_prepro": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_talaris2014": {
"log": "",
"state": "passed"
},
"core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_beta_nov16": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_cart_bonded": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_atr": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_dun": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_dun_dev": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_dun_rot": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_dun_semi": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_atr_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_rep_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_fa_sol": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_hbonds": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_hxl_tors": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_lk_ball": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_lk_ball_bridge": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_lk_ball_bridge_uncpl": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_lk_ball_iso": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_omega": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_pro_close": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_rama": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_beta_peptoid_TwoChainTests:test_cyclic_permutation_rama_prepro": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_beta_nov15": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_cart_bonded": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_fa_atr": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_fa_dun": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_fa_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_fa_intra_sol_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_fa_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_fa_sol": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_hbonds": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_lk_ball_wtd": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_omega": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_pro_close": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_rama": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_rama_prepro": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_beta_nov15": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_cart_bonded": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_atr": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_dun": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_sol": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_hbonds": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_lk_ball_wtd": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_omega": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_pro_close": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_rama": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_rama_prepro": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_beta_nov16": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_cart_bonded": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_atr": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_dun_dev": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_dun_rot": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_dun_semi": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_intra_atr_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_intra_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_intra_rep_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_intra_sol_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_sol": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_hbonds": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_hxl_tors": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_lk_ball": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_lk_ball_bridge": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_lk_ball_bridge_uncpl": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_lk_ball_iso": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_omega": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_pro_close": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_rama": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_rama_prepro": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_beta_nov16": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_cart_bonded": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_atr": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_dun_dev": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_dun_rot": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_dun_semi": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_atr_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_rep_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_sol": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_hbonds": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_hxl_tors": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_lk_ball": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_lk_ball_bridge": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_lk_ball_bridge_uncpl": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_lk_ball_iso": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_omega": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_pro_close": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_rama": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_rama_prepro": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_beta": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_cart_bonded": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_atr": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_dun_dev": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_dun_rot": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_dun_semi": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_intra_atr_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_intra_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_intra_rep_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_intra_sol_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_sol": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_hbonds": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_hxl_tors": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_lk_ball": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_lk_ball_bridge": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_lk_ball_bridge_uncpl": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_lk_ball_iso": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_omega": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_pro_close": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_rama": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_rama_prepro": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_dun_dev": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_dun_semi": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_atr_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_rep_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_lk_ball_bridge": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_lk_ball_bridge_uncpl": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_pro_close": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_rama_prepro": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_beta": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_cart_bonded": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_atr": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_dun_rot": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_intra_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_intra_sol_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_sol": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_hbonds": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_hxl_tors": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_lk_ball": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_lk_ball_iso": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_omega": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_rama": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_beta_nov15": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_cart_bonded": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_fa_atr": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_fa_dun": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_fa_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_fa_intra_sol_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_fa_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_fa_sol": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_hbonds": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_lk_ball_wtd": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_omega": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_pro_close": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_rama": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_rama_prepro": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_beta_nov15": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_cart_bonded": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_atr": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_dun": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_sol": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_hbonds": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_lk_ball_wtd": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_omega": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_pro_close": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_rama": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_rama_prepro": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_beta_nov15": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_cart_bonded": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_atr": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_dun": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_intra_sol_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_sol": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_hbonds": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_lk_ball_wtd": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_omega": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_pro_close": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_rama": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_rama_prepro": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_beta_nov15": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_cart_bonded": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_atr": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_dun": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_fa_sol": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_hbonds": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_lk_ball_wtd": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_omega": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_pro_close": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_rama": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_rama_prepro": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_TwoChainTests:test_cyclic_permutation_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_beta_nov16": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_cart_bonded": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_atr": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_dun_dev": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_dun_rot": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_dun_semi": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_atr_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_elec": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_rep_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_sol_xover4": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_rep": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_sol": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_hbonds": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_hxl_tors": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_lk_ball": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_lk_ball_bridge": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_lk_ball_bridge_uncpl": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_lk_ball_iso": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_omega": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_pro_close": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_rama": {
"log": "",
"state": "passed"
},
"core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_rama_prepro": {
"log": "",
"state": "passed"
},
"core:DAminoAcidImportTests:test_import_ddpp_cycpep": {
"log": "",
"state": "passed"
},
"core:DAminoAcidImportTests:test_import_ddpp_ldpp_cycpep": {
"log": "",
"state": "passed"
},
"core:DEERDataCacheTest:test_sorted_data_direct": {
"log": "",
"state": "passed"
},
"core:DEERDataCacheTest:test_sorted_data_from_options": {
"log": "",
"state": "passed"
},
"core:DEERDataTest:test_base_fxns": {
"log": "",
"state": "passed"
},
"core:DEERDataTest:test_cross_entropy": {
"log": "",
"state": "passed"
},
"core:DEERDataTest:test_derived_bounds_fxns": {
"log": "",
"state": "passed"
},
"core:DEERDataTest:test_derived_decay_fxns": {
"log": "",
"state": "passed"
},
"core:DEERDataTest:test_derived_distance_fxns": {
"log": "",
"state": "passed"
},
"core:DEERDataTest:test_methods": {
"log": "",
"state": "passed"
},
"core:DEEREnergyMethodTest:test_energy_method_big": {
"log": "",
"state": "passed"
},
"core:DEEREnergyMethodTest:test_energy_method_details": {
"log": "",
"state": "passed"
},
"core:DEPC_MS_EnergyTests:test_depc_ms": {
"log": "",
"state": "passed"
},
"core:DihedralConstraintTests:test_dihe_constraints": {
"log": "",
"state": "passed"
},
"core:DihedralConstraintTests:test_dihe_score": {
"log": "",
"state": "passed"
},
"core:DihedralConstraintTests:test_dihedral_constraint_clone": {
"log": "",
"state": "passed"
},
"core:DihedralConstraintTests:test_dihedral_derivatives": {
"log": "",
"state": "passed"
},
"core:DihedralConstraintTests:test_serialize_DihedralConstraint": {
"log": "",
"state": "passed"
},
"core:DihedralPairConstraintTests:test_serialize_DihedralPairConstraint": {
"log": "",
"state": "passed"
},
"core:Dunbrack2002Test:test_chi_derivatives_w_dunE": {
"log": "",
"state": "passed"
},
"core:Dunbrack2002Test:test_d_equiv": {
"log": "",
"state": "passed"
},
"core:Dunbrack2002Test:test_d_equiv_NEUTRALS": {
"log": "",
"state": "passed"
},
"core:Dunbrack2002Test:test_dunbrack_best_rotamer_energy": {
"log": "",
"state": "passed"
},
"core:Dunbrack2002Test:test_dunbrack_get_rotamer_probability": {
"log": "",
"state": "passed"
},
"core:Dunbrack2002Test:test_dunbrack_rotamers": {
"log": "",
"state": "passed"
},
"core:Dunbrack2002Test:test_phipsi_derivatives_w_dunE": {
"log": "",
"state": "passed"
},
"core:DunbrackEnergyTests:test_dunbrack_cart_deriv_check_partial_flexibility": {
"log": "",
"state": "passed"
},
"core:DunbrackEnergyTests:test_dunbrack_deriv_check_full_flexibility": {
"log": "",
"state": "passed"
},
"core:DunbrackEnergyTests:test_dunbrack_deriv_check_partial_flexibility": {
"log": "",
"state": "passed"
},
"core:DunbrackEnergyTests:test_dunbrack_symm_cart_deriv_check_partial_flexibility": {
"log": "",
"state": "passed"
},
"core:DunbrackEnergyTests:test_get_bb_bins_range": {
"log": "",
"state": "passed"
},
"core:DunbrackEnergyTests:test_get_dof_deriv_atoms": {
"log": "",
"state": "passed"
},
"core:DunbrackEnergyTests:test_peptoid_energy_snap": {
"log": "",
"state": "passed"
},
"core:DunbrackEnergyTests_oligourea:test_beta_aa_dunbrack_scoring": {
"log": "",
"state": "passed"
},
"core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_derivs": {
"log": "",
"state": "passed"
},
"core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_derivs2": {
"log": "",
"state": "passed"
},
"core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_scoring": {
"log": "",
"state": "passed"
},
"core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_scoring2": {
"log": "",
"state": "passed"
},
"core:DunbrackEnergyTests_oligourea:test_oligourea_proline_pack": {
"log": "",
"state": "passed"
},
"core:DunbrackEnergyTests_oligourea:test_oligourea_proline_score": {
"log": "",
"state": "passed"
},
"core:DunbrackEnergyTests_peptoid:test_peptoid_IV_reporting": {
"log": "",
"state": "passed"
},
"core:DunbrackEnergyTests_peptoid:test_peptoid_dunbrack_derivs": {
"log": "",
"state": "passed"
},
"core:DunbrackEnergyTests_peptoid:test_peptoid_dunbrack_scoring": {
"log": "",
"state": "passed"
},
"core:EPRSpinLabelTest:test_histograms": {
"log": "",
"state": "passed"
},
"core:EPRSpinLabelTest:test_read_db": {
"log": "",
"state": "passed"
},
"core:ElementsTests:test_elements_to_name": {
"log": "",
"state": "passed"
},
"core:ElementsTests:test_name_to_elements": {
"log": "",
"state": "passed"
},
"core:EnergyGraphTests:test_serialize_energy_graph": {
"log": "",
"state": "passed"
},
"core:EnergyGraphTests:test_serialize_energy_graph_from_graph_op": {
"log": "",
"state": "passed"
},
"core:EnergyMapTest:test_EnergyMap_AssignmentOperator": {
"log": "",
"state": "passed"
},
"core:EnergyMapTest:test_EnergyMap_Constructor": {
"log": "",
"state": "passed"
},
"core:EnergyMapTest:test_EnergyMap_accumulate": {
"log": "",
"state": "passed"
},
"core:EnergyMapTest:test_EnergyMap_accumulate_with_weight_factor": {
"log": "",
"state": "passed"
},
"core:EnergyMapTest:test_EnergyMap_begin": {
"log": "",
"state": "passed"
},
"core:EnergyMapTest:test_EnergyMap_clear": {
"log": "",
"state": "passed"
},
"core:EnergyMapTest:test_EnergyMap_constbegin": {
"log": "",
"state": "passed"
},
"core:EnergyMapTest:test_EnergyMap_constend": {
"log": "",
"state": "passed"
},
"core:EnergyMapTest:test_EnergyMap_dot": {
"log": "",
"state": "passed"
},
"core:EnergyMapTest:test_EnergyMap_end": {
"log": "",
"state": "passed"
},
"core:EnergyMapTest:test_EnergyMap_get": {
"log": "",
"state": "passed"
},
"core:EnergyMapTest:test_EnergyMap_minus_equals_operator": {
"log": "",
"state": "passed"
},
"core:EnergyMapTest:test_EnergyMap_norm_squared": {
"log": "",
"state": "passed"
},
"core:EnergyMapTest:test_EnergyMap_operator_square_brackets_const": {
"log": "",
"state": "passed"
},
"core:EnergyMapTest:test_EnergyMap_operator_square_brackets_nonconst": {
"log": "",
"state": "passed"
},
"core:EnergyMapTest:test_EnergyMap_plus_equals_operator": {
"log": "",
"state": "passed"
},
"core:EnergyMapTest:test_EnergyMap_set": {
"log": "",
"state": "passed"
},
"core:EnergyMapTest:test_EnergyMap_times_equals_operator": {
"log": "",
"state": "passed"
},
"core:EnergyMapTest:test_EnergyMap_zero": {
"log": "",
"state": "passed"
},
"core:EnergyMapTest:test_EnergyMap_zero_with_params": {
"log": "",
"state": "passed"
},
"core:EnvPairPotentialTest:test_compute_centroid_environment": {
"log": "",
"state": "passed"
},
"core:EnvSmoothEnergyTests:test_envsmooth_deriv_check_w_full_bb_flexibility": {
"log": "",
"state": "passed"
},
"core:EnvSmoothEnergyTests:test_setup_for_minimizing_with_envsmooth_and_partial_bbflex": {
"log": "",
"state": "passed"
},
"core:EnvSmoothEnergyTests:test_setup_for_minimizing_with_envsmooth_partial_bb_flex_and_full_sc_flex": {
"log": "",
"state": "passed"
},
"core:EnzymeDatabaseIOTests:test_read_enzyme_data_from_file": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_default_enmethopts_signal_analytic_etable": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_etab_numeric_deriv_check_analytic_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_etab_numeric_deriv_check_table_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_etable_cart_derivatives_w_autoupdate_intraresidue_terms_and_partial_bb_flex_analytic_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_etable_derivatives_w_autoupdate_intraresidue_terms_and_full_bb_flex_analytic_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_etable_derivatives_w_autoupdate_intraresidue_terms_and_full_bb_flex_table_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_etable_derivatives_w_autoupdate_intraresidue_terms_and_partial_bb_flex_analytic_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_etable_derivatives_w_autoupdate_intraresidue_terms_and_partial_bb_flex_table_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_etable_symm_cart_derivatives_w_intraresidue_terms_and_partial_bb_flex_analytic_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_etrable_trie_vs_trie": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_eval_intra_residue_energy_w_minimization_data_analytic_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_eval_intra_residue_energy_w_minimization_data_table_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_eval_residue_pair_energy_analytic_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_eval_residue_pair_energy_table_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_eval_residue_pair_energy_w_minimization_data": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_retrieve_etables_from_scoring_manager": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_serialize_etable_trie": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_setup_for_minimizing_with_autoupdate2_analytic_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_setup_for_minimizing_with_autoupdate2_table_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_setup_for_minimizing_with_autoupdate_w_full_bb_flexibility_analytic_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_setup_for_minimizing_with_autoupdate_w_full_bb_flexibility_table_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_setup_for_minimizing_with_autoupdate_w_partial_bb_flexibility_analytic_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_setup_for_minimizing_with_autoupdate_w_partial_bb_flexibility_table_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_start_func_matches_start_score_w_full_bbflex_analytic_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_start_func_matches_start_score_w_full_bbflex_and_intraresidue_analytic_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_start_func_matches_start_score_w_full_bbflex_and_intraresidue_table_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_start_func_matches_start_score_w_full_bbflex_table_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_start_func_matches_start_score_w_partial_bbflex_analytic_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_start_func_matches_start_score_w_partial_bbflex_and_intraresidue_analytic_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_start_func_matches_start_score_w_partial_bbflex_and_intraresidue_table_version": {
"log": "",
"state": "passed"
},
"core:EtableEnergyTests:test_start_func_matches_start_score_w_partial_bbflex_table_version": {
"log": "",
"state": "passed"
},
"core:EtableFuncTests:test_serialize_EtableFunc": {
"log": "",
"state": "passed"
},
"core:EtableUnModifyPotTests:test_etable_analytic_derivatives": {
"log": "",
"state": "passed"
},
"core:FASTERAnnealerTests:test_instantiate_FASTER_annealer": {
"log": "",
"state": "passed"
},
"core:FASTERInteractionGraphTests:test_instantiate_FASTER_ig": {
"log": "",
"state": "passed"
},
"core:FASTERInteractionGraphTests:test_repeated_multithreaded_FASTER_ig_calculation": {
"log": "",
"state": "passed"
},
"core:FA_ElecEnergyTests:test_elec_default_settings": {
"log": "",
"state": "passed"
},
"core:FA_ElecEnergyTests:test_elec_deriv_check_w_full_torsional_flexibility": {
"log": "",
"state": "passed"
},
"core:FA_ElecEnergyTests:test_elec_deriv_check_w_full_torsional_flexibility_smoothed": {
"log": "",
"state": "passed"
},
"core:FA_ElecEnergyTests:test_elec_deriv_check_w_full_torsional_flexibility_smoothed_wo_ddd": {
"log": "",
"state": "passed"
},
"core:FA_ElecEnergyTests:test_elec_die": {
"log": "",
"state": "passed"
},
"core:FA_ElecEnergyTests:test_elec_max_dis": {
"log": "",
"state": "passed"
},
"core:FA_ElecEnergyTests:test_elec_min_dis": {
"log": "",
"state": "passed"
},
"core:FA_ElecEnergyTests:test_elec_nblist_autoupdate_no_smoothing": {
"log": "",
"state": "passed"
},
"core:FA_ElecEnergyTests:test_elec_nblist_autoupdate_with_smoothing": {
"log": "",
"state": "passed"
},
"core:FA_ElecEnergyTests:test_elec_no_dis_dep_die": {
"log": "",
"state": "passed"
},
"core:FA_ElecEnergyTests:test_elec_w_intra_nblist_autoupdate_no_smoothing": {
"log": "",
"state": "passed"
},
"core:FA_ElecEnergyTests:test_elec_w_intra_nblist_autoupdate_with_smoothing": {
"log": "",
"state": "passed"
},
"core:FA_ElecEnergyTests_pre_talaris:test_elec_pre_talaris_2013_settings": {
"log": "",
"state": "passed"
},
"core:FaMPEnvTest:test_fampenvenergy_deriv": {
"log": "",
"state": "passed"
},
"core:FaMPSolvTest:test_fampsolvenergy_deriv": {
"log": "",
"state": "passed"
},
"core:FaMbEnvTest:test_fambenvenergy_deriv": {
"log": "",
"state": "passed"
},
"core:FaMbSolvTest:test_fambsolvenergy_deriv": {
"log": "",
"state": "passed"
},
"core:FabConstraintTests:test_serialize_FabConstraint": {
"log": "",
"state": "passed"
},
"core:FadeFuncTests:test_serialize_FadeFunc": {
"log": "",
"state": "passed"
},
"core:FiberDiffractionEnergyTest:test_FiberDiffractionEnergy": {
"log": "",
"state": "passed"
},
"core:FieldTests:test_field_basic": {
"log": "",
"state": "passed"
},
"core:FillAUTOTaskOperationTests:test_FillAUTO": {
"log": "",
"state": "passed"
},
"core:FillAUTOTaskOperationTests:test_noAUTO": {
"log": "",
"state": "passed"
},
"core:FixHisTautomerTest:test_fix_his_tautomer": {
"log": "",
"state": "passed"
},
"core:FlatHarmonicFuncTests:test_serialize_FlatHarmonicFunc": {
"log": "",
"state": "passed"
},
"core:FoldTreeSketch:test_cycle_removal": {
"log": "",
"state": "passed"
},
"core:FoldTreeSketch:test_one_jump_res_sketch": {
"log": "",
"state": "passed"
},
"core:FoldTreeSketch:test_simple_res_sketch": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_add_prepend_and_delete_edge_methods": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_add_vertex": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_append_residue": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_append_residue_by_chemical_bond": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_boundary_left": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_boundary_right": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_connected": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_cut_edge": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_cutpoint_by_jump": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_cutpoints": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_delete_extra_vertices": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_delete_jump": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_delete_jump_and_intervening_cutpoint": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_delete_jump_seqpos": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_delete_segment": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_delete_self_edges": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_delete_seqpos": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_downstream_and_upstream_jump_residue_methods": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_edge_label": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_fold_tree_construction": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_fold_tree_serialization": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_get_chemical_edges": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_get_jump_that_builds_residue": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_get_outgoing_edges": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_get_parent_residue": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_get_polymer_residue_direction": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_get_residue_edge": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_hash_value_modified": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_hash_value_unmodified": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_insert_fold_tree_by_jump": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_insert_polymer_residue": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_insert_residue_by_chemical_bond": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_insert_residue_by_jump": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_last_residue_is_cutpoint": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_new_chemical_bond": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_new_jump": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_partition_by_jump": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_partition_by_residue": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_renumber_jumps": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_reorder": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_slide_cutpoint": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_slide_jump": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_update_edge_label": {
"log": "",
"state": "passed"
},
"core:FoldTreeTest:test_utility_function_remodel_fold_tree_to_account_for_insertion": {
"log": "",
"state": "passed"
},
"core:FractionSelectorTests:test_fractionselector": {
"log": "",
"state": "passed"
},
"core:FragmentConstantLengthTest:test_frag_cache": {
"log": "",
"state": "passed"
},
"core:FragmentConstantLengthTest:test_frag_iterator": {
"log": "",
"state": "passed"
},
"core:FragmentConstantLengthTest:test_fragment_stealing_insertion": {
"log": "",
"state": "passed"
},
"core:FragmentConstantLengthTest:test_insertmap": {
"log": "",
"state": "passed"
},
"core:FullatomCustomPairDistanceEnergyTests:test_custom_pairdist_deriv_check_w_full_torsional_flexibility": {
"log": "",
"state": "passed"
},
"core:FullatomDisulfideEnergyTests:test_disulfE_deriv_check_w_partial_flexibility": {
"log": "",
"state": "passed"
},
"core:FullatomDisulfideEnergyTests:test_disulfE_deriv_check_w_total_flexibility": {
"log": "",
"state": "passed"
},
"core:GasteigerAtomTypeSetTests:test_atom_type_retreval": {
"log": "",
"state": "passed"
},
"core:GasteigerAtomTypeSetTests:test_element_association": {
"log": "",
"state": "passed"
},
"core:GasteigerAtomTyperTests:test_cannonicals": {
"log": "",
"state": "passed"
},
"core:GasteigerAtomTyperTests:test_charge_states": {
"log": "",
"state": "passed"
},
"core:GasteigerAtomTyperTests:test_implicit_hydrogens": {
"log": "",
"state": "passed"
},
"core:GasteigerAtomTyperTests:test_oxides": {
"log": "",
"state": "passed"
},
"core:GasteigerAtomTyperTests:test_safety": {
"log": "",
"state": "passed"
},
"core:GasteigerAtomTyperTests:test_virtuals": {
"log": "",
"state": "passed"
},
"core:GaussianChainDoubleFuncTests:test_serialize_GaussianChainDoubleFunc": {
"log": "",
"state": "passed"
},
"core:GaussianChainFuncTests:test_GaussianDoubleChainFunc": {
"log": "",
"state": "passed"
},
"core:GaussianChainFuncTests:test_GaussianQuadrupleChainFunc": {
"log": "",
"state": "passed"
},
"core:GaussianChainFuncTests:test_GaussianTripleChainFunc": {
"log": "",
"state": "passed"
},
"core:GaussianChainFuncTests:test_serialize_GaussianChainFunc": {
"log": "",
"state": "passed"
},
"core:GaussianChainGeneralFuncTests:test_GaussianChainGeneralFunc": {
"log": "",
"state": "passed"
},
"core:GaussianChainGeneralFuncTests:test_serialize_GaussianChainGeneralFunc": {
"log": "",
"state": "passed"
},
"core:GaussianChainQuadrupleFuncTests:test_serialize_GaussianChainQuadrupleFunc": {
"log": "",
"state": "passed"
},
"core:GaussianChainSingleFuncTests:test_serialize_GaussianChainSingleFunc": {
"log": "",
"state": "passed"
},
"core:GaussianChainTripleFuncTests:test_serialize_GaussianChainTripleFunc": {
"log": "",
"state": "passed"
},
"core:GaussianFuncTests:test_gaussian_func": {
"log": "",
"state": "passed"
},
"core:GaussianFuncTests:test_serialize_GaussianFunc": {
"log": "",
"state": "passed"
},
"core:GeometricSolEnergyTests:test_empty_geomsol_test": {
"log": "",
"state": "passed"
},
"core:GlycanResidueSelectorTest:test_residue_selectors": {
"log": "",
"state": "passed"
},
"core:GlycanTreeSetTests:test_glycan_end_residue_deletion": {
"log": "",
"state": "passed"
},
"core:GlycanTreeSetTests:test_glycan_tree_sequence": {
"log": "",
"state": "passed"
},
"core:GlycanTreeSetTests:test_glycan_tree_set": {
"log": "",
"state": "passed"
},
"core:GlycanTreeSetTests:test_glycosylations": {
"log": "",
"state": "passed"
},
"core:GlycanTreeSetTests:test_non_glycan_pose": {
"log": "",
"state": "passed"
},
"core:GlycanTreeSetTests:test_residue_deletions_and_additions": {
"log": "",
"state": "passed"
},
"core:GlycanTreeSetTests:test_serialization_and_clone": {
"log": "",
"state": "passed"
},
"core:GlycanTreeSetTests:test_serialization_observation": {
"log": "",
"state": "passed"
},
"core:HBNetEnergyTests:test_basic_and_symmetric_scoring": {
"log": "",
"state": "passed"
},
"core:HBNetEnergyTests:test_linear_scoring": {
"log": "",
"state": "passed"
},
"core:HBNetEnergyTests:test_log_scoring": {
"log": "",
"state": "passed"
},
"core:HBNetEnergyTests:test_max_network_size": {
"log": "",
"state": "passed"
},
"core:HBNetEnergyTests:test_quadratic_scoring": {
"log": "",
"state": "passed"
},
"core:HBNetEnergyTests:test_sqrt_scoring": {
"log": "",
"state": "passed"
},
"core:HBPolyTest:test_Polynomial_1d_model": {
"log": "",
"state": "passed"
},
"core:HBPolyTest:test_read_polynomials_from_database": {
"log": "",
"state": "passed"
},
"core:HBondDatabaseTest:test_validate_score12_hbond_database": {
"log": "",
"state": "passed"
},
"core:HBondDerivTest:test_dummy_test": {
"log": "",
"state": "passed"
},
"core:HBondDerivTest:test_hbond_sp2_deriv_no_fade_energy": {
"log": "",
"state": "passed"
},
"core:HBondDerivTest:test_hbond_sp3acc_deriv_no_fade_energy": {
"log": "",
"state": "passed"
},
"core:HBondEnergyTests:test_hbond_shift_hbond_energy_functionality": {
"log": "",
"state": "passed"
},
"core:HBondEnergyTests:test_hbonds_deriv_check_w_full_torsional_flexibility": {
"log": "",
"state": "passed"
},
"core:HBondEnergyTests:test_hbonds_deriv_check_w_partial_torsional_flexibility": {
"log": "",
"state": "passed"
},
"core:HBondEnergyTests:test_hbonds_trie_vs_trie_no_bbsc_exclusion": {
"log": "",
"state": "passed"
},
"core:HBondEnergyTests:test_hbonds_trie_vs_trie_sp2": {
"log": "",
"state": "passed"
},
"core:HBondEnergyTests:test_hbonds_trie_vs_trie_standard": {
"log": "",
"state": "passed"
},
"core:HBondEnergyTests:test_hbonds_w_excluded_bb_sc_interactions": {
"log": "",
"state": "passed"
},
"core:HBondEnergyTests:test_hbonds_w_sp2term_deriv_check_w_full_torsional_flexibility": {
"log": "",
"state": "passed"
},
"core:HBondEnergyTests:test_hbonds_w_sp2term_deriv_check_w_partial_torsional_flexibility": {
"log": "",
"state": "passed"
},
"core:HBondGraphTests:test_AtomInfo": {
"log": "",
"state": "passed"
},
"core:HBondGraphTests:test_hbond_graph": {
"log": "",
"state": "passed"
},
"core:HBondGraphUtilTests:test_graph_completeness": {
"log": "",
"state": "passed"
},
"core:HBondsFadeEnergy:test_fade_energy": {
"log": "",
"state": "passed"
},
"core:HBondsFadeEnergy:test_fade_energy_derivs": {
"log": "",
"state": "passed"
},
"core:HBondsForDemos:test_easy_construction_printing_hbond_set": {
"log": "",
"state": "passed"
},
"core:HBondsTest:test_hbond_compute_energy2": {
"log": "",
"state": "passed"
},
"core:HBondsTest:test_hbond_compute_energy_sp2": {
"log": "",
"state": "passed"
},
"core:HBondsTest:test_hbond_set": {
"log": "",
"state": "passed"
},
"core:HBondsTest:test_hbond_type_manager": {
"log": "",
"state": "passed"
},
"core:HBondsTest:test_specific_instance": {
"log": "",
"state": "passed"
},
"core:HPatchInteractionGraphTests:test_bg_node_2_resid": {
"log": "",
"state": "passed"
},
"core:HPatchInteractionGraphTests:test_calculate_alt_state_hpatch_score": {
"log": "",
"state": "passed"
},
"core:HPatchInteractionGraphTests:test_commit_substitution": {
"log": "",
"state": "passed"
},
"core:HPatchInteractionGraphTests:test_consider_substitution": {
"log": "",
"state": "passed"
},
"core:HPatchInteractionGraphTests:test_curr_state_exp_hphobes": {
"log": "",
"state": "passed"
},
"core:HPatchInteractionGraphTests:test_curr_state_hphobes": {
"log": "",
"state": "passed"
},
"core:HPatchInteractionGraphTests:test_get_energy_current_state_assignment": {
"log": "",
"state": "passed"
},
"core:HPatchInteractionGraphTests:test_graph_initialization": {
"log": "",
"state": "passed"
},
"core:HPatchInteractionGraphTests:test_partial_redesign_using_linmem_ig": {
"log": "",
"state": "passed"
},
"core:HPatchInteractionGraphTests:test_partial_redesign_using_pd_ig": {
"log": "",
"state": "passed"
},
"core:HRFDynamicsEnergyTests:test_hrf_dynam": {
"log": "",
"state": "passed"
},
"core:HarmonicFuncTests:test_harmonic_func": {
"log": "",
"state": "passed"
},
"core:HarmonicFuncTests:test_serialize_HarmonicFunc": {
"log": "",
"state": "passed"
},
"core:HbondMetricTests:test_default": {
"log": "",
"state": "passed"
},
"core:HbondMetricTests:test_include_self": {
"log": "",
"state": "passed"
},
"core:HeaderInformationTests:test_header_information_basic": {
"log": "",
"state": "passed"
},
"core:HullTest:test_clockwise": {
"log": "",
"state": "passed"
},
"core:HullTest:test_distance": {
"log": "",
"state": "passed"
},
"core:HullTest:test_enclosing_angles": {
"log": "",
"state": "passed"
},
"core:HullTest:test_find_closest": {
"log": "",
"state": "passed"
},
"core:HullTest:test_find_farthest": {
"log": "",
"state": "passed"
},
"core:HullTest:test_get_angles": {
"log": "",
"state": "passed"
},
"core:HullTest:test_get_distances": {
"log": "",
"state": "passed"
},
"core:HullTest:test_inside_polygon": {
"log": "",
"state": "passed"
},
"core:HullTest:test_intersect": {
"log": "",
"state": "passed"
},
"core:HullTest:test_on_segment": {
"log": "",
"state": "passed"
},
"core:HullTest:test_points_in_triangle": {
"log": "",
"state": "passed"
},
"core:HullTest:test_to_left": {
"log": "",
"state": "passed"
},
"core:IdealParametersDatabaseTests:test_torsion_generation": {
"log": "",
"state": "passed"
},
"core:IdentityFuncTests:test_serialize_IdentityFunc": {
"log": "",
"state": "passed"
},
"core:ImplicitLipidInfo:test_df_cavity": {
"log": "",
"state": "passed"
},
"core:ImplicitLipidInfo:test_f_cavity": {
"log": "",
"state": "passed"
},
"core:ImplicitLipidInfo:test_f_cavity_gradient": {
"log": "",
"state": "passed"
},
"core:ImplicitLipidInfo:test_f_depth": {
"log": "",
"state": "passed"
},
"core:ImplicitLipidInfo:test_f_depth_gradient": {
"log": "",
"state": "passed"
},
"core:ImplicitLipidInfo:test_f_hydration": {
"log": "",
"state": "passed"
},
"core:ImplicitLipidInfo:test_f_hydration_gradient": {
"log": "",
"state": "passed"
},
"core:ImplicitLipidInfo:test_g_radius": {
"log": "",
"state": "passed"
},
"core:ImplicitLipidInfo:test_implicit_lipid_info_initialization": {
"log": "",
"state": "passed"
},
"core:ImportPoseOptionsTests:test_options_actually_reads_option_collection": {
"log": "",
"state": "passed"
},
"core:ImportPoseOptionsTests:test_options_and_options_list_in_sync": {
"log": "",
"state": "passed"
},
"core:IndependentBBTorsionSRFDTests:test_apply": {
"log": "",
"state": "passed"
},
"core:InterGroupInterfaceByVectorSelectorTests:test_InterGroupInterfaceByVectorSelector_order_independence": {
"log": "",
"state": "passed"
},
"core:InterGroupInterfaceByVectorSelectorTests:test_InterGroupInterfaceByVectorSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:InterGroupInterfaceByVectorSelectorTests:test_InterGroupInterfaceByVectorSelector_parse_my_tag_fail_only_one_subselector": {
"log": "",
"state": "passed"
},
"core:InterGroupInterfaceByVectorSelectorTests:test_InterGroupInterfaceByVectorSelector_parse_my_tag_no_provided_grp1_data": {
"log": "",
"state": "passed"
},
"core:InterGroupInterfaceByVectorSelectorTests:test_InterGroupInterfaceByVectorSelector_parse_my_tag_no_provided_grp2_data": {
"log": "",
"state": "passed"
},
"core:InterGroupInterfaceByVectorSelectorTests:test_InterGroupInterfaceByVectorSelector_parse_my_tag_selectors_not_in_datamap": {
"log": "",
"state": "passed"
},
"core:InterGroupInterfaceByVectorSelectorTests:test_interface_vector_selector_from_resselector_on_test_in_pdb": {
"log": "",
"state": "passed"
},
"core:InterGroupInterfaceByVectorSelectorTests:test_interface_vector_selector_from_std_set_on_test_in_pdb": {
"log": "",
"state": "passed"
},
"core:InteractionGraphFactoryTests:test_DensePDInteractionGraph": {
"log": "",
"state": "passed"
},
"core:InteractionGraphFactoryTests:test_DoubleLazyInteractionGraph": {
"log": "",
"state": "passed"
},
"core:InteractionGraphFactoryTests:test_LazyInteractionGraph": {
"log": "",
"state": "passed"
},
"core:InteractionGraphFactoryTests:test_LinearMemoryInteractionGraph": {
"log": "",
"state": "passed"
},
"core:InteractionGraphFactoryTests:test_LinearMemorySurfaceInteractionGraph": {
"log": "",
"state": "passed"
},
"core:InteractionGraphFactoryTests:test_PDInteractionGraph": {
"log": "",
"state": "passed"
},
"core:InteractionGraphFactoryTests:test_PDSurfaceInteractionGraph": {
"log": "",
"state": "passed"
},
"core:InterchainJumpSelectorTests:test_InterchainJumpSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:InterchainJumpSelectorTests:test_interchain_jump_selector": {
"log": "",
"state": "passed"
},
"core:InverseJumpFromInternalCoordsTests:test_agreement_between_forwards_and_backwards_calculations": {
"log": "cd build/test/debug/linux/5.4/64/x86/gcc/4.8/default && /usr/bin/python /home/benchmark/rosetta/source/test/timelimit.py 4320.0 /usr/bin/valgrind ./core.test InverseJumpFromInternalCoordsTests --database /home/benchmark/rosetta/database -mute all -no_fconfig 1>&2\nRunning core.test:InverseJumpFromInternalCoordsTests unit tests...\n==147616== Memcheck, a memory error detector\n==147616== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.\n==147616== Using Valgrind-3.15.0 and LibVEX; rerun with -h for copyright info\n==147616== Command: ./core.test InverseJumpFromInternalCoordsTests --database /home/benchmark/rosetta/database -mute all -no_fconfig\n==147616== \nRunning one suite: InverseJumpFromInternalCoordsTests\nTest suite: InverseJumpFromInternalCoordsTests (test/core/kinematics/inverse/jump_from_internal_coords.cxxtest.hh)\n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303A8698: sqrt (in /usr/lib64/libm-2.17.so)\n==147616== by 0xCF45EE: numeric::xyzVector<double>::length() const (xyzVector.hh:1384)\n==147616== by 0x290E94C9: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:200)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0xF6E52E: test_calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cxxtest.hh:75)\n==147616== by 0xF6ED62: InverseJumpFromInternalCoordsTests::test_angles_with_zero_torsion() (jump_from_internal_coords.cxxtest.hh:113)\n==147616== by 0xF733A9: TestDescription_InverseJumpFromInternalCoordsTests_test_angles_with_zero_torsion::runTest() (jump_from_internal_coords.cxxtest.cpp:26)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== by 0x15C358A: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:87)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x290E9512: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:203)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0xF6E52E: test_calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cxxtest.hh:75)\n==147616== by 0xF6ED62: InverseJumpFromInternalCoordsTests::test_angles_with_zero_torsion() (jump_from_internal_coords.cxxtest.hh:113)\n==147616== by 0xF733A9: TestDescription_InverseJumpFromInternalCoordsTests_test_angles_with_zero_torsion::runTest() (jump_from_internal_coords.cxxtest.cpp:26)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n...truncated...\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Use of uninitialised value of size 8\n==147616== at 0x303E886E: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Use of uninitialised value of size 8\n==147616== at 0x303E889B: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8918: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8F7B: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8940: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8946: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8954: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== \n==147616== HEAP SUMMARY:\n==147616== in use at exit: 59,251 bytes in 1,299 blocks\n==147616== total heap usage: 26,406,203 allocs, 26,404,904 frees, 2,382,740,513 bytes allocated\n==147616== \n==147616== LEAK SUMMARY:\n==147616== definitely lost: 0 bytes in 0 blocks\n==147616== indirectly lost: 0 bytes in 0 blocks\n==147616== possibly lost: 0 bytes in 0 blocks\n==147616== still reachable: 59,251 bytes in 1,299 blocks\n==147616== of which reachable via heuristic:\n==147616== stdstring : 34,807 bytes in 860 blocks\n==147616== suppressed: 0 bytes in 0 blocks\n==147616== Rerun with --leak-check=full to see details of leaked memory\n==147616== \n==147616== Use --track-origins=yes to see where uninitialised values come from\n==147616== For lists of detected and suppressed errors, rerun with: -s\n==147616== ERROR SUMMARY: 101931 errors from 614 contexts (suppressed: 0 from 0)\n",
"state": "failed"
},
"core:InverseJumpFromInternalCoordsTests:test_alignment_to_known_position": {
"log": "cd build/test/debug/linux/5.4/64/x86/gcc/4.8/default && /usr/bin/python /home/benchmark/rosetta/source/test/timelimit.py 4320.0 /usr/bin/valgrind ./core.test InverseJumpFromInternalCoordsTests --database /home/benchmark/rosetta/database -mute all -no_fconfig 1>&2\nRunning core.test:InverseJumpFromInternalCoordsTests unit tests...\n==147616== Memcheck, a memory error detector\n==147616== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.\n==147616== Using Valgrind-3.15.0 and LibVEX; rerun with -h for copyright info\n==147616== Command: ./core.test InverseJumpFromInternalCoordsTests --database /home/benchmark/rosetta/database -mute all -no_fconfig\n==147616== \nRunning one suite: InverseJumpFromInternalCoordsTests\nTest suite: InverseJumpFromInternalCoordsTests (test/core/kinematics/inverse/jump_from_internal_coords.cxxtest.hh)\n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303A8698: sqrt (in /usr/lib64/libm-2.17.so)\n==147616== by 0xCF45EE: numeric::xyzVector<double>::length() const (xyzVector.hh:1384)\n==147616== by 0x290E94C9: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:200)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0xF6E52E: test_calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cxxtest.hh:75)\n==147616== by 0xF6ED62: InverseJumpFromInternalCoordsTests::test_angles_with_zero_torsion() (jump_from_internal_coords.cxxtest.hh:113)\n==147616== by 0xF733A9: TestDescription_InverseJumpFromInternalCoordsTests_test_angles_with_zero_torsion::runTest() (jump_from_internal_coords.cxxtest.cpp:26)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== by 0x15C358A: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:87)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x290E9512: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:203)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0xF6E52E: test_calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cxxtest.hh:75)\n==147616== by 0xF6ED62: InverseJumpFromInternalCoordsTests::test_angles_with_zero_torsion() (jump_from_internal_coords.cxxtest.hh:113)\n==147616== by 0xF733A9: TestDescription_InverseJumpFromInternalCoordsTests_test_angles_with_zero_torsion::runTest() (jump_from_internal_coords.cxxtest.cpp:26)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n...truncated...\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Use of uninitialised value of size 8\n==147616== at 0x303E886E: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Use of uninitialised value of size 8\n==147616== at 0x303E889B: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8918: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8F7B: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8940: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8946: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8954: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== \n==147616== HEAP SUMMARY:\n==147616== in use at exit: 59,251 bytes in 1,299 blocks\n==147616== total heap usage: 26,406,203 allocs, 26,404,904 frees, 2,382,740,513 bytes allocated\n==147616== \n==147616== LEAK SUMMARY:\n==147616== definitely lost: 0 bytes in 0 blocks\n==147616== indirectly lost: 0 bytes in 0 blocks\n==147616== possibly lost: 0 bytes in 0 blocks\n==147616== still reachable: 59,251 bytes in 1,299 blocks\n==147616== of which reachable via heuristic:\n==147616== stdstring : 34,807 bytes in 860 blocks\n==147616== suppressed: 0 bytes in 0 blocks\n==147616== Rerun with --leak-check=full to see details of leaked memory\n==147616== \n==147616== Use --track-origins=yes to see where uninitialised values come from\n==147616== For lists of detected and suppressed errors, rerun with: -s\n==147616== ERROR SUMMARY: 101931 errors from 614 contexts (suppressed: 0 from 0)\n",
"state": "failed"
},
"core:InverseJumpFromInternalCoordsTests:test_angles_w_torsion": {
"log": "cd build/test/debug/linux/5.4/64/x86/gcc/4.8/default && /usr/bin/python /home/benchmark/rosetta/source/test/timelimit.py 4320.0 /usr/bin/valgrind ./core.test InverseJumpFromInternalCoordsTests --database /home/benchmark/rosetta/database -mute all -no_fconfig 1>&2\nRunning core.test:InverseJumpFromInternalCoordsTests unit tests...\n==147616== Memcheck, a memory error detector\n==147616== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.\n==147616== Using Valgrind-3.15.0 and LibVEX; rerun with -h for copyright info\n==147616== Command: ./core.test InverseJumpFromInternalCoordsTests --database /home/benchmark/rosetta/database -mute all -no_fconfig\n==147616== \nRunning one suite: InverseJumpFromInternalCoordsTests\nTest suite: InverseJumpFromInternalCoordsTests (test/core/kinematics/inverse/jump_from_internal_coords.cxxtest.hh)\n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303A8698: sqrt (in /usr/lib64/libm-2.17.so)\n==147616== by 0xCF45EE: numeric::xyzVector<double>::length() const (xyzVector.hh:1384)\n==147616== by 0x290E94C9: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:200)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0xF6E52E: test_calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cxxtest.hh:75)\n==147616== by 0xF6ED62: InverseJumpFromInternalCoordsTests::test_angles_with_zero_torsion() (jump_from_internal_coords.cxxtest.hh:113)\n==147616== by 0xF733A9: TestDescription_InverseJumpFromInternalCoordsTests_test_angles_with_zero_torsion::runTest() (jump_from_internal_coords.cxxtest.cpp:26)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== by 0x15C358A: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:87)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x290E9512: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:203)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0xF6E52E: test_calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cxxtest.hh:75)\n==147616== by 0xF6ED62: InverseJumpFromInternalCoordsTests::test_angles_with_zero_torsion() (jump_from_internal_coords.cxxtest.hh:113)\n==147616== by 0xF733A9: TestDescription_InverseJumpFromInternalCoordsTests_test_angles_with_zero_torsion::runTest() (jump_from_internal_coords.cxxtest.cpp:26)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n...truncated...\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Use of uninitialised value of size 8\n==147616== at 0x303E886E: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Use of uninitialised value of size 8\n==147616== at 0x303E889B: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8918: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8F7B: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8940: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8946: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8954: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== \n==147616== HEAP SUMMARY:\n==147616== in use at exit: 59,251 bytes in 1,299 blocks\n==147616== total heap usage: 26,406,203 allocs, 26,404,904 frees, 2,382,740,513 bytes allocated\n==147616== \n==147616== LEAK SUMMARY:\n==147616== definitely lost: 0 bytes in 0 blocks\n==147616== indirectly lost: 0 bytes in 0 blocks\n==147616== possibly lost: 0 bytes in 0 blocks\n==147616== still reachable: 59,251 bytes in 1,299 blocks\n==147616== of which reachable via heuristic:\n==147616== stdstring : 34,807 bytes in 860 blocks\n==147616== suppressed: 0 bytes in 0 blocks\n==147616== Rerun with --leak-check=full to see details of leaked memory\n==147616== \n==147616== Use --track-origins=yes to see where uninitialised values come from\n==147616== For lists of detected and suppressed errors, rerun with: -s\n==147616== ERROR SUMMARY: 101931 errors from 614 contexts (suppressed: 0 from 0)\n",
"state": "failed"
},
"core:InverseJumpFromInternalCoordsTests:test_angles_w_torsion2": {
"log": "cd build/test/debug/linux/5.4/64/x86/gcc/4.8/default && /usr/bin/python /home/benchmark/rosetta/source/test/timelimit.py 4320.0 /usr/bin/valgrind ./core.test InverseJumpFromInternalCoordsTests --database /home/benchmark/rosetta/database -mute all -no_fconfig 1>&2\nRunning core.test:InverseJumpFromInternalCoordsTests unit tests...\n==147616== Memcheck, a memory error detector\n==147616== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.\n==147616== Using Valgrind-3.15.0 and LibVEX; rerun with -h for copyright info\n==147616== Command: ./core.test InverseJumpFromInternalCoordsTests --database /home/benchmark/rosetta/database -mute all -no_fconfig\n==147616== \nRunning one suite: InverseJumpFromInternalCoordsTests\nTest suite: InverseJumpFromInternalCoordsTests (test/core/kinematics/inverse/jump_from_internal_coords.cxxtest.hh)\n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303A8698: sqrt (in /usr/lib64/libm-2.17.so)\n==147616== by 0xCF45EE: numeric::xyzVector<double>::length() const (xyzVector.hh:1384)\n==147616== by 0x290E94C9: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:200)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0xF6E52E: test_calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cxxtest.hh:75)\n==147616== by 0xF6ED62: InverseJumpFromInternalCoordsTests::test_angles_with_zero_torsion() (jump_from_internal_coords.cxxtest.hh:113)\n==147616== by 0xF733A9: TestDescription_InverseJumpFromInternalCoordsTests_test_angles_with_zero_torsion::runTest() (jump_from_internal_coords.cxxtest.cpp:26)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== by 0x15C358A: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:87)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x290E9512: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:203)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0xF6E52E: test_calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cxxtest.hh:75)\n==147616== by 0xF6ED62: InverseJumpFromInternalCoordsTests::test_angles_with_zero_torsion() (jump_from_internal_coords.cxxtest.hh:113)\n==147616== by 0xF733A9: TestDescription_InverseJumpFromInternalCoordsTests_test_angles_with_zero_torsion::runTest() (jump_from_internal_coords.cxxtest.cpp:26)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n...truncated...\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Use of uninitialised value of size 8\n==147616== at 0x303E886E: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Use of uninitialised value of size 8\n==147616== at 0x303E889B: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8918: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8F7B: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8940: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8946: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8954: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== \n==147616== HEAP SUMMARY:\n==147616== in use at exit: 59,251 bytes in 1,299 blocks\n==147616== total heap usage: 26,406,203 allocs, 26,404,904 frees, 2,382,740,513 bytes allocated\n==147616== \n==147616== LEAK SUMMARY:\n==147616== definitely lost: 0 bytes in 0 blocks\n==147616== indirectly lost: 0 bytes in 0 blocks\n==147616== possibly lost: 0 bytes in 0 blocks\n==147616== still reachable: 59,251 bytes in 1,299 blocks\n==147616== of which reachable via heuristic:\n==147616== stdstring : 34,807 bytes in 860 blocks\n==147616== suppressed: 0 bytes in 0 blocks\n==147616== Rerun with --leak-check=full to see details of leaked memory\n==147616== \n==147616== Use --track-origins=yes to see where uninitialised values come from\n==147616== For lists of detected and suppressed errors, rerun with: -s\n==147616== ERROR SUMMARY: 101931 errors from 614 contexts (suppressed: 0 from 0)\n",
"state": "failed"
},
"core:InverseJumpFromInternalCoordsTests:test_angles_with_zero_torsion": {
"log": "cd build/test/debug/linux/5.4/64/x86/gcc/4.8/default && /usr/bin/python /home/benchmark/rosetta/source/test/timelimit.py 4320.0 /usr/bin/valgrind ./core.test InverseJumpFromInternalCoordsTests --database /home/benchmark/rosetta/database -mute all -no_fconfig 1>&2\nRunning core.test:InverseJumpFromInternalCoordsTests unit tests...\n==147616== Memcheck, a memory error detector\n==147616== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.\n==147616== Using Valgrind-3.15.0 and LibVEX; rerun with -h for copyright info\n==147616== Command: ./core.test InverseJumpFromInternalCoordsTests --database /home/benchmark/rosetta/database -mute all -no_fconfig\n==147616== \nRunning one suite: InverseJumpFromInternalCoordsTests\nTest suite: InverseJumpFromInternalCoordsTests (test/core/kinematics/inverse/jump_from_internal_coords.cxxtest.hh)\n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303A8698: sqrt (in /usr/lib64/libm-2.17.so)\n==147616== by 0xCF45EE: numeric::xyzVector<double>::length() const (xyzVector.hh:1384)\n==147616== by 0x290E94C9: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:200)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0xF6E52E: test_calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cxxtest.hh:75)\n==147616== by 0xF6ED62: InverseJumpFromInternalCoordsTests::test_angles_with_zero_torsion() (jump_from_internal_coords.cxxtest.hh:113)\n==147616== by 0xF733A9: TestDescription_InverseJumpFromInternalCoordsTests_test_angles_with_zero_torsion::runTest() (jump_from_internal_coords.cxxtest.cpp:26)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== by 0x15C358A: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:87)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x290E9512: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:203)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0xF6E52E: test_calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cxxtest.hh:75)\n==147616== by 0xF6ED62: InverseJumpFromInternalCoordsTests::test_angles_with_zero_torsion() (jump_from_internal_coords.cxxtest.hh:113)\n==147616== by 0xF733A9: TestDescription_InverseJumpFromInternalCoordsTests_test_angles_with_zero_torsion::runTest() (jump_from_internal_coords.cxxtest.cpp:26)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n...truncated...\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Use of uninitialised value of size 8\n==147616== at 0x303E886E: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Use of uninitialised value of size 8\n==147616== at 0x303E889B: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8918: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8F7B: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8940: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8946: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8954: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== \n==147616== HEAP SUMMARY:\n==147616== in use at exit: 59,251 bytes in 1,299 blocks\n==147616== total heap usage: 26,406,203 allocs, 26,404,904 frees, 2,382,740,513 bytes allocated\n==147616== \n==147616== LEAK SUMMARY:\n==147616== definitely lost: 0 bytes in 0 blocks\n==147616== indirectly lost: 0 bytes in 0 blocks\n==147616== possibly lost: 0 bytes in 0 blocks\n==147616== still reachable: 59,251 bytes in 1,299 blocks\n==147616== of which reachable via heuristic:\n==147616== stdstring : 34,807 bytes in 860 blocks\n==147616== suppressed: 0 bytes in 0 blocks\n==147616== Rerun with --leak-check=full to see details of leaked memory\n==147616== \n==147616== Use --track-origins=yes to see where uninitialised values come from\n==147616== For lists of detected and suppressed errors, rerun with: -s\n==147616== ERROR SUMMARY: 101931 errors from 614 contexts (suppressed: 0 from 0)\n",
"state": "failed"
},
"core:InverseJumpFromInternalCoordsTests:test_angles_with_zero_torsion2": {
"log": "cd build/test/debug/linux/5.4/64/x86/gcc/4.8/default && /usr/bin/python /home/benchmark/rosetta/source/test/timelimit.py 4320.0 /usr/bin/valgrind ./core.test InverseJumpFromInternalCoordsTests --database /home/benchmark/rosetta/database -mute all -no_fconfig 1>&2\nRunning core.test:InverseJumpFromInternalCoordsTests unit tests...\n==147616== Memcheck, a memory error detector\n==147616== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.\n==147616== Using Valgrind-3.15.0 and LibVEX; rerun with -h for copyright info\n==147616== Command: ./core.test InverseJumpFromInternalCoordsTests --database /home/benchmark/rosetta/database -mute all -no_fconfig\n==147616== \nRunning one suite: InverseJumpFromInternalCoordsTests\nTest suite: InverseJumpFromInternalCoordsTests (test/core/kinematics/inverse/jump_from_internal_coords.cxxtest.hh)\n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303A8698: sqrt (in /usr/lib64/libm-2.17.so)\n==147616== by 0xCF45EE: numeric::xyzVector<double>::length() const (xyzVector.hh:1384)\n==147616== by 0x290E94C9: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:200)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0xF6E52E: test_calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cxxtest.hh:75)\n==147616== by 0xF6ED62: InverseJumpFromInternalCoordsTests::test_angles_with_zero_torsion() (jump_from_internal_coords.cxxtest.hh:113)\n==147616== by 0xF733A9: TestDescription_InverseJumpFromInternalCoordsTests_test_angles_with_zero_torsion::runTest() (jump_from_internal_coords.cxxtest.cpp:26)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== by 0x15C358A: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:87)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x290E9512: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:203)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0xF6E52E: test_calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cxxtest.hh:75)\n==147616== by 0xF6ED62: InverseJumpFromInternalCoordsTests::test_angles_with_zero_torsion() (jump_from_internal_coords.cxxtest.hh:113)\n==147616== by 0xF733A9: TestDescription_InverseJumpFromInternalCoordsTests_test_angles_with_zero_torsion::runTest() (jump_from_internal_coords.cxxtest.cpp:26)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n...truncated...\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Use of uninitialised value of size 8\n==147616== at 0x303E886E: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Use of uninitialised value of size 8\n==147616== at 0x303E889B: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8918: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8F7B: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8940: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8946: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8954: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== \n==147616== HEAP SUMMARY:\n==147616== in use at exit: 59,251 bytes in 1,299 blocks\n==147616== total heap usage: 26,406,203 allocs, 26,404,904 frees, 2,382,740,513 bytes allocated\n==147616== \n==147616== LEAK SUMMARY:\n==147616== definitely lost: 0 bytes in 0 blocks\n==147616== indirectly lost: 0 bytes in 0 blocks\n==147616== possibly lost: 0 bytes in 0 blocks\n==147616== still reachable: 59,251 bytes in 1,299 blocks\n==147616== of which reachable via heuristic:\n==147616== stdstring : 34,807 bytes in 860 blocks\n==147616== suppressed: 0 bytes in 0 blocks\n==147616== Rerun with --leak-check=full to see details of leaked memory\n==147616== \n==147616== Use --track-origins=yes to see where uninitialised values come from\n==147616== For lists of detected and suppressed errors, rerun with: -s\n==147616== ERROR SUMMARY: 101931 errors from 614 contexts (suppressed: 0 from 0)\n",
"state": "failed"
},
"core:InverseJumpFromInternalCoordsTests:test_angles_with_zero_torsion3": {
"log": "cd build/test/debug/linux/5.4/64/x86/gcc/4.8/default && /usr/bin/python /home/benchmark/rosetta/source/test/timelimit.py 4320.0 /usr/bin/valgrind ./core.test InverseJumpFromInternalCoordsTests --database /home/benchmark/rosetta/database -mute all -no_fconfig 1>&2\nRunning core.test:InverseJumpFromInternalCoordsTests unit tests...\n==147616== Memcheck, a memory error detector\n==147616== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.\n==147616== Using Valgrind-3.15.0 and LibVEX; rerun with -h for copyright info\n==147616== Command: ./core.test InverseJumpFromInternalCoordsTests --database /home/benchmark/rosetta/database -mute all -no_fconfig\n==147616== \nRunning one suite: InverseJumpFromInternalCoordsTests\nTest suite: InverseJumpFromInternalCoordsTests (test/core/kinematics/inverse/jump_from_internal_coords.cxxtest.hh)\n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303A8698: sqrt (in /usr/lib64/libm-2.17.so)\n==147616== by 0xCF45EE: numeric::xyzVector<double>::length() const (xyzVector.hh:1384)\n==147616== by 0x290E94C9: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:200)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0xF6E52E: test_calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cxxtest.hh:75)\n==147616== by 0xF6ED62: InverseJumpFromInternalCoordsTests::test_angles_with_zero_torsion() (jump_from_internal_coords.cxxtest.hh:113)\n==147616== by 0xF733A9: TestDescription_InverseJumpFromInternalCoordsTests_test_angles_with_zero_torsion::runTest() (jump_from_internal_coords.cxxtest.cpp:26)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== by 0x15C358A: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:87)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x290E9512: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:203)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0xF6E52E: test_calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cxxtest.hh:75)\n==147616== by 0xF6ED62: InverseJumpFromInternalCoordsTests::test_angles_with_zero_torsion() (jump_from_internal_coords.cxxtest.hh:113)\n==147616== by 0xF733A9: TestDescription_InverseJumpFromInternalCoordsTests_test_angles_with_zero_torsion::runTest() (jump_from_internal_coords.cxxtest.cpp:26)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n...truncated...\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Use of uninitialised value of size 8\n==147616== at 0x303E886E: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Use of uninitialised value of size 8\n==147616== at 0x303E889B: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8918: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8F7B: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8940: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8946: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8954: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== \n==147616== HEAP SUMMARY:\n==147616== in use at exit: 59,251 bytes in 1,299 blocks\n==147616== total heap usage: 26,406,203 allocs, 26,404,904 frees, 2,382,740,513 bytes allocated\n==147616== \n==147616== LEAK SUMMARY:\n==147616== definitely lost: 0 bytes in 0 blocks\n==147616== indirectly lost: 0 bytes in 0 blocks\n==147616== possibly lost: 0 bytes in 0 blocks\n==147616== still reachable: 59,251 bytes in 1,299 blocks\n==147616== of which reachable via heuristic:\n==147616== stdstring : 34,807 bytes in 860 blocks\n==147616== suppressed: 0 bytes in 0 blocks\n==147616== Rerun with --leak-check=full to see details of leaked memory\n==147616== \n==147616== Use --track-origins=yes to see where uninitialised values come from\n==147616== For lists of detected and suppressed errors, rerun with: -s\n==147616== ERROR SUMMARY: 101931 errors from 614 contexts (suppressed: 0 from 0)\n",
"state": "failed"
},
"core:InverseJumpFromInternalCoordsTests:test_bind_to_CO": {
"log": "cd build/test/debug/linux/5.4/64/x86/gcc/4.8/default && /usr/bin/python /home/benchmark/rosetta/source/test/timelimit.py 4320.0 /usr/bin/valgrind ./core.test InverseJumpFromInternalCoordsTests --database /home/benchmark/rosetta/database -mute all -no_fconfig 1>&2\nRunning core.test:InverseJumpFromInternalCoordsTests unit tests...\n==147616== Memcheck, a memory error detector\n==147616== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.\n==147616== Using Valgrind-3.15.0 and LibVEX; rerun with -h for copyright info\n==147616== Command: ./core.test InverseJumpFromInternalCoordsTests --database /home/benchmark/rosetta/database -mute all -no_fconfig\n==147616== \nRunning one suite: InverseJumpFromInternalCoordsTests\nTest suite: InverseJumpFromInternalCoordsTests (test/core/kinematics/inverse/jump_from_internal_coords.cxxtest.hh)\n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303A8698: sqrt (in /usr/lib64/libm-2.17.so)\n==147616== by 0xCF45EE: numeric::xyzVector<double>::length() const (xyzVector.hh:1384)\n==147616== by 0x290E94C9: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:200)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0xF6E52E: test_calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cxxtest.hh:75)\n==147616== by 0xF6ED62: InverseJumpFromInternalCoordsTests::test_angles_with_zero_torsion() (jump_from_internal_coords.cxxtest.hh:113)\n==147616== by 0xF733A9: TestDescription_InverseJumpFromInternalCoordsTests_test_angles_with_zero_torsion::runTest() (jump_from_internal_coords.cxxtest.cpp:26)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== by 0x15C358A: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:87)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x290E9512: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:203)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0xF6E52E: test_calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cxxtest.hh:75)\n==147616== by 0xF6ED62: InverseJumpFromInternalCoordsTests::test_angles_with_zero_torsion() (jump_from_internal_coords.cxxtest.hh:113)\n==147616== by 0xF733A9: TestDescription_InverseJumpFromInternalCoordsTests_test_angles_with_zero_torsion::runTest() (jump_from_internal_coords.cxxtest.cpp:26)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n...truncated...\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Use of uninitialised value of size 8\n==147616== at 0x303E886E: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Use of uninitialised value of size 8\n==147616== at 0x303E889B: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8918: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8F7B: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8940: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8946: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8954: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== \n==147616== HEAP SUMMARY:\n==147616== in use at exit: 59,251 bytes in 1,299 blocks\n==147616== total heap usage: 26,406,203 allocs, 26,404,904 frees, 2,382,740,513 bytes allocated\n==147616== \n==147616== LEAK SUMMARY:\n==147616== definitely lost: 0 bytes in 0 blocks\n==147616== indirectly lost: 0 bytes in 0 blocks\n==147616== possibly lost: 0 bytes in 0 blocks\n==147616== still reachable: 59,251 bytes in 1,299 blocks\n==147616== of which reachable via heuristic:\n==147616== stdstring : 34,807 bytes in 860 blocks\n==147616== suppressed: 0 bytes in 0 blocks\n==147616== Rerun with --leak-check=full to see details of leaked memory\n==147616== \n==147616== Use --track-origins=yes to see where uninitialised values come from\n==147616== For lists of detected and suppressed errors, rerun with: -s\n==147616== ERROR SUMMARY: 101931 errors from 614 contexts (suppressed: 0 from 0)\n",
"state": "failed"
},
"core:InverseJumpFromInternalCoordsTests:test_smooth_angle_sampling": {
"log": "cd build/test/debug/linux/5.4/64/x86/gcc/4.8/default && /usr/bin/python /home/benchmark/rosetta/source/test/timelimit.py 4320.0 /usr/bin/valgrind ./core.test InverseJumpFromInternalCoordsTests --database /home/benchmark/rosetta/database -mute all -no_fconfig 1>&2\nRunning core.test:InverseJumpFromInternalCoordsTests unit tests...\n==147616== Memcheck, a memory error detector\n==147616== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.\n==147616== Using Valgrind-3.15.0 and LibVEX; rerun with -h for copyright info\n==147616== Command: ./core.test InverseJumpFromInternalCoordsTests --database /home/benchmark/rosetta/database -mute all -no_fconfig\n==147616== \nRunning one suite: InverseJumpFromInternalCoordsTests\nTest suite: InverseJumpFromInternalCoordsTests (test/core/kinematics/inverse/jump_from_internal_coords.cxxtest.hh)\n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303A8698: sqrt (in /usr/lib64/libm-2.17.so)\n==147616== by 0xCF45EE: numeric::xyzVector<double>::length() const (xyzVector.hh:1384)\n==147616== by 0x290E94C9: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:200)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0xF6E52E: test_calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cxxtest.hh:75)\n==147616== by 0xF6ED62: InverseJumpFromInternalCoordsTests::test_angles_with_zero_torsion() (jump_from_internal_coords.cxxtest.hh:113)\n==147616== by 0xF733A9: TestDescription_InverseJumpFromInternalCoordsTests_test_angles_with_zero_torsion::runTest() (jump_from_internal_coords.cxxtest.cpp:26)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== by 0x15C358A: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:87)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x290E9512: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:203)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0xF6E52E: test_calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cxxtest.hh:75)\n==147616== by 0xF6ED62: InverseJumpFromInternalCoordsTests::test_angles_with_zero_torsion() (jump_from_internal_coords.cxxtest.hh:113)\n==147616== by 0xF733A9: TestDescription_InverseJumpFromInternalCoordsTests_test_angles_with_zero_torsion::runTest() (jump_from_internal_coords.cxxtest.cpp:26)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n...truncated...\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Use of uninitialised value of size 8\n==147616== at 0x303E886E: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Use of uninitialised value of size 8\n==147616== at 0x303E889B: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8918: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8F7B: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8940: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8946: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== Conditional jump or move depends on uninitialised value(s)\n==147616== at 0x303E8954: __sin_avx (in /usr/lib64/libm-2.17.so)\n==147616== by 0xE14BCF: numeric::xyzMatrix<double> numeric::x_rotation_matrix<double>(double const&) (xyz.functions.hh:671)\n==147616== by 0x8C95500: numeric::xyzMatrix<double> numeric::x_rotation_matrix_radians<double>(double const&) (xyz.functions.hh:690)\n==147616== by 0x290E9801: core::kinematics::tree::BondedAtom::update_internal_coords(std::__debug::deque<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*>, std::allocator<std::pair<core::kinematics::tree::Atom*, core::kinematics::Stub*> > >*, std::__debug::deque<core::kinematics::Stub, std::allocator<core::kinematics::Stub> >*, core::kinematics::Stub&) (BondedAtom.cc:248)\n==147616== by 0x290D886A: core::kinematics::tree::Atom_::update_internal_coords(core::kinematics::Stub&, bool) (Atom_.cc:122)\n==147616== by 0x290D85DC: core::kinematics::tree::Atom_::update_internal_coords(bool) (Atom_.cc:78)\n==147616== by 0x290D6BD8: core::kinematics::inverse::calc_new_atom_location(numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, numeric::xyzVector<double> const&, double, double, double) (jump_from_internal_coords.cc:230)\n==147616== by 0x290D6568: core::kinematics::inverse::jump_from_internal_coords(core::conformation::Conformation const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordAtoms const&, core::kinematics::inverse::InternalCoordGeometry, unsigned long) (jump_from_internal_coords.cc:181)\n==147616== by 0xF72519: InverseJumpFromInternalCoordsTests::test_smooth_angle_sampling() (jump_from_internal_coords.cxxtest.hh:469)\n==147616== by 0xF735E7: TestDescription_InverseJumpFromInternalCoordsTests_test_smooth_angle_sampling::runTest() (jump_from_internal_coords.cxxtest.cpp:68)\n==147616== by 0x15BEDAC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)\n==147616== by 0x15C3809: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:109)\n==147616== \n==147616== \n==147616== HEAP SUMMARY:\n==147616== in use at exit: 59,251 bytes in 1,299 blocks\n==147616== total heap usage: 26,406,203 allocs, 26,404,904 frees, 2,382,740,513 bytes allocated\n==147616== \n==147616== LEAK SUMMARY:\n==147616== definitely lost: 0 bytes in 0 blocks\n==147616== indirectly lost: 0 bytes in 0 blocks\n==147616== possibly lost: 0 bytes in 0 blocks\n==147616== still reachable: 59,251 bytes in 1,299 blocks\n==147616== of which reachable via heuristic:\n==147616== stdstring : 34,807 bytes in 860 blocks\n==147616== suppressed: 0 bytes in 0 blocks\n==147616== Rerun with --leak-check=full to see details of leaked memory\n==147616== \n==147616== Use --track-origins=yes to see where uninitialised values come from\n==147616== For lists of detected and suppressed errors, rerun with: -s\n==147616== ERROR SUMMARY: 101931 errors from 614 contexts (suppressed: 0 from 0)\n",
"state": "failed"
},
"core:InverseJumpTests:test_known_solution": {
"log": "",
"state": "passed"
},
"core:InverseJumpTests:test_throw_upon_bad_input": {
"log": "",
"state": "passed"
},
"core:IsopeptideBondTests:test_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:IsopeptideBondTests:test_rama_prepro": {
"log": "",
"state": "passed"
},
"core:JumpDownstreamSelectorTests:test_JumpDownstreamSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:JumpDownstreamSelectorTests:test_JumpDownstreamSelector_simple_two_chains": {
"log": "",
"state": "passed"
},
"core:JumpDownstreamSelectorTests:test_NeighbohoodResidueSelector_fail_no_resnums": {
"log": "",
"state": "passed"
},
"core:JumpForResidueTests:test_on_ala_chains": {
"log": "",
"state": "passed"
},
"core:JumpIndexSelectorTests:test_JumpIndexSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:JumpIndexSelectorTests:test_jump_index_jump_selector": {
"log": "",
"state": "passed"
},
"core:JumpUpstreamSelectorTests:test_JumpUpstreamSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:JumpUpstreamSelectorTests:test_NeighbohoodResidueSelector_fail_no_resnums": {
"log": "",
"state": "passed"
},
"core:KarplusFuncTests:test_serialize_KarplusFunc": {
"log": "",
"state": "passed"
},
"core:KofNConstraintTests:test_serialize_KofNConstraint": {
"log": "",
"state": "passed"
},
"core:LK_BallEnergyTests:test_lk_ball_bridge_rpe_matches_bbbb_bbsc_scscE": {
"log": "",
"state": "passed"
},
"core:LK_BallEnergyTests:test_lk_ball_rpe_matches_bbbb_bbsc_scscE": {
"log": "",
"state": "passed"
},
"core:LK_BallEnergyTests:test_lk_ball_setup_for_scoring": {
"log": "",
"state": "passed"
},
"core:LK_BallEnergyTests:test_lkball_numeric_deriv_check": {
"log": "",
"state": "passed"
},
"core:LK_BallEnergyTests:test_nblist_auto_update_derivatives_w_full_bb_flex": {
"log": "",
"state": "passed"
},
"core:LK_BallEnergyTests:test_nblist_auto_update_derivatives_w_partial_bb_flex": {
"log": "",
"state": "passed"
},
"core:LK_BallEnergyTests:test_start_func_matches_start_score_w_full_bbflex": {
"log": "",
"state": "passed"
},
"core:LK_BallEnergyTests:test_start_func_matches_start_score_w_partial_bbflex": {
"log": "",
"state": "passed"
},
"core:LK_DomeEnergyTests:test_actual_packing": {
"log": "",
"state": "passed"
},
"core:LK_DomeEnergyTests:test_bit_functions": {
"log": "",
"state": "passed"
},
"core:LK_DomeEnergyTests:test_derivative_finder": {
"log": "",
"state": "passed"
},
"core:LK_DomeEnergyTests:test_dlk_dome_E_dR": {
"log": "",
"state": "passed"
},
"core:LK_DomeEnergyTests:test_dr_datom": {
"log": "",
"state": "passed"
},
"core:LK_DomeEnergyTests:test_helper_setup": {
"log": "",
"state": "passed"
},
"core:LK_DomeEnergyTests:test_interaction_range": {
"log": "",
"state": "passed"
},
"core:LK_DomeEnergyTests:test_lkball_numeric_deriv_check": {
"log": "",
"state": "passed"
},
"core:LK_DomeEnergyTests:test_packing": {
"log": "",
"state": "passed"
},
"core:LK_DomeEnergyTests:test_simple": {
"log": "",
"state": "passed"
},
"core:LK_DomeEnergyTests:test_simple_derivs": {
"log": "",
"state": "passed"
},
"core:LinMemInteractionGraphTests:test_linmem_ig": {
"log": "",
"state": "passed"
},
"core:LinearChainbreakEnergyTests:test_linear_chainbreak_deriv_check": {
"log": "",
"state": "passed"
},
"core:LinearPenaltyFunctionTests:test_serialize_LinearPenaltyFunction": {
"log": "",
"state": "passed"
},
"core:LocalCoordinateConstraintTests:test_serialize_LocalCoordinateConstraint": {
"log": "",
"state": "passed"
},
"core:LogicResidueSelectorTests:test_logic_selector_parse_my_tag_comma_in_selectors": {
"log": "",
"state": "passed"
},
"core:LogicResidueSelectorTests:test_logic_selector_parse_my_tag_more_than_one_provided_selectors": {
"log": "",
"state": "passed"
},
"core:LogicResidueSelectorTests:test_logic_selector_parse_my_tag_no_name_option": {
"log": "",
"state": "passed"
},
"core:LogicResidueSelectorTests:test_logic_selector_parse_my_tag_no_provided_selectors": {
"log": "",
"state": "passed"
},
"core:LogicResidueSelectorTests:test_logic_selector_parse_my_tag_residue_selector": {
"log": "",
"state": "passed"
},
"core:LogicResidueSelectorTests:test_logic_selector_parse_my_tag_residue_selectors": {
"log": "",
"state": "passed"
},
"core:LogicResidueSelectorTests:test_logic_selector_parse_my_tag_selector": {
"log": "",
"state": "passed"
},
"core:LogicResidueSelectorTests:test_logic_selector_parse_my_tag_selectors": {
"log": "",
"state": "passed"
},
"core:LoopGraphTest:test_loop_cycles": {
"log": "",
"state": "passed"
},
"core:MHCEpitopeConstraintTests:test_mhc_constraints": {
"log": "",
"state": "passed"
},
"core:MHCEpitopeEnergySetupTests_initialization:test_iedb_database_integrity": {
"log": "",
"state": "passed"
},
"core:MHCEpitopeEnergySetupTests_initialization:test_mhc_init_csv": {
"log": "",
"state": "passed"
},
"core:MHCEpitopeEnergySetupTests_initialization:test_mhc_init_database": {
"log": "",
"state": "passed"
},
"core:MHCEpitopeEnergySetupTests_initialization:test_mhc_init_matrix": {
"log": "",
"state": "passed"
},
"core:MHCEpitopeEnergySetupTests_initialization:test_mhc_init_svm": {
"log": "",
"state": "passed"
},
"core:MHCEpitopeEnergySetupTests_initialization:test_mhc_xformed_raw": {
"log": "",
"state": "passed"
},
"core:MHCEpitopeEnergySetupTests_initialization:test_mhc_xformed_relative_additive": {
"log": "",
"state": "passed"
},
"core:MHCEpitopeEnergySetupTests_initialization:test_mhc_xformed_relative_multiplicative": {
"log": "",
"state": "passed"
},
"core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_caching": {
"log": "",
"state": "passed"
},
"core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_chainbreak": {
"log": "",
"state": "passed"
},
"core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_external": {
"log": "",
"state": "passed"
},
"core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_matrix_scoring": {
"log": "",
"state": "passed"
},
"core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_overhangs": {
"log": "",
"state": "passed"
},
"core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_overhangs_multichain": {
"log": "",
"state": "passed"
},
"core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_packer": {
"log": "",
"state": "passed"
},
"core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_sym": {
"log": "",
"state": "passed"
},
"core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_uaa": {
"log": "",
"state": "passed"
},
"core:MHCEpitopePredictorExternalTests:test_mhc_predictor_external": {
"log": "",
"state": "passed"
},
"core:MHCEpitopePredictorMatrixTests:test_mhc_predictor_matrix": {
"log": "",
"state": "passed"
},
"core:MHCEpitopePredictorPreLoadedTests:test_mhc_predictor_preloaded": {
"log": "",
"state": "passed"
},
"core:MHCEpitopePredictorSVMTests:test_mhc_predictor_svm": {
"log": "",
"state": "passed"
},
"core:MMAtomTypeSetTests:test_add_mm_atom_type_set_parameters_from_the_commandline": {
"log": "",
"state": "passed"
},
"core:MMAtomTypeSetTests:test_atom_type_index": {
"log": "",
"state": "passed"
},
"core:MMAtomTypeSetTests:test_contains_atom_type": {
"log": "",
"state": "passed"
},
"core:MMAtomTypeSetTests:test_n_atomtypes": {
"log": "",
"state": "passed"
},
"core:MMAtomTypeSetTests:test_operator_brackets": {
"log": "",
"state": "passed"
},
"core:MMBondAngleEnergyTests:test_energy": {
"log": "",
"state": "passed"
},
"core:MMBondAngleEnergyTests:test_energy_original": {
"log": "",
"state": "passed"
},
"core:MMBondAngleEnergyTests:test_mmbond_angle_energy_start_score_start_func_match_w_total_flexibility": {
"log": "",
"state": "passed"
},
"core:MMBondAngleLibraryTests:test_extra_bond_angles": {
"log": "",
"state": "passed"
},
"core:MMBondAngleLibraryTests:test_lookup": {
"log": "",
"state": "passed"
},
"core:MMBondAngleScoreTests:test_score": {
"log": "",
"state": "passed"
},
"core:MMTorsionEnergyTests:test_eval_intrares_energy": {
"log": "",
"state": "passed"
},
"core:MMTorsionEnergyTests:test_residue_pair_energy": {
"log": "",
"state": "passed"
},
"core:MMTorsionLibraryTests:test_extra_torsions": {
"log": "",
"state": "passed"
},
"core:MMTorsionLibraryTests:test_lookup": {
"log": "",
"state": "passed"
},
"core:MMTorsionScoreTests:test_score": {
"log": "",
"state": "passed"
},
"core:MPHelicalityTests:test_burial_sigmoid": {
"log": "",
"state": "passed"
},
"core:MPHelicalityTests:test_calc_energy": {
"log": "",
"state": "passed"
},
"core:MPHelicalityTests:test_calc_residue_burial": {
"log": "",
"state": "passed"
},
"core:MPHelicalityTests:test_cen_neighbors": {
"log": "",
"state": "passed"
},
"core:MPHelicalityTests:test_fa_neighbors": {
"log": "",
"state": "passed"
},
"core:MPHelicalityTests:test_residue_energy": {
"log": "",
"state": "passed"
},
"core:MPResidueLipophilicityTests:test_burial_sigmoid": {
"log": "",
"state": "passed"
},
"core:MPResidueLipophilicityTests:test_calc_energy": {
"log": "",
"state": "passed"
},
"core:MPResidueLipophilicityTests:test_calc_residue_burial": {
"log": "",
"state": "passed"
},
"core:MPResidueLipophilicityTests:test_cen_neighbors": {
"log": "",
"state": "passed"
},
"core:MPResidueLipophilicityTests:test_fa_neighbors": {
"log": "",
"state": "passed"
},
"core:MPSpanAngleEnergyTests:test_calc_span_score": {
"log": "",
"state": "passed"
},
"core:MPSpanAngleEnergyTests:test_compute": {
"log": "",
"state": "passed"
},
"core:MPSpanAngleEnergyTests:test_finalize_total_energy": {
"log": "",
"state": "passed"
},
"core:MPSpanAngleEnergyTests:test_find_helix_vector": {
"log": "",
"state": "passed"
},
"core:MPSpanInsertionEnergyTests:test_calc_span_score": {
"log": "",
"state": "passed"
},
"core:MPSpanInsertionEnergyTests:test_compute": {
"log": "",
"state": "passed"
},
"core:MPSpanInsertionEnergyTests:test_create_updated_spans": {
"log": "",
"state": "passed"
},
"core:MPSpanInsertionEnergyTests:test_finalize_total_energy": {
"log": "",
"state": "passed"
},
"core:MPSpanInsertionEnergyTests:test_spline_by_z": {
"log": "",
"state": "passed"
},
"core:MPasymEZTests:test_residue_energy": {
"log": "",
"state": "passed"
},
"core:MembraneGeometryTest:test_1py6_bicelle_transition_values": {
"log": "",
"state": "passed"
},
"core:MembraneGeometryTest:test_1py6_slab_transition_values": {
"log": "",
"state": "passed"
},
"core:MembraneGeometryTest:test_bicelle_initialization": {
"log": "",
"state": "passed"
},
"core:MembraneGeometryTest:test_bicelle_radius_cmd_line": {
"log": "",
"state": "passed"
},
"core:MembraneGeometryTest:test_bicelle_radius_from_protein_diameter": {
"log": "",
"state": "passed"
},
"core:MembraneGeometryTest:test_default_slab_initialization": {
"log": "",
"state": "passed"
},
"core:MembraneGeometryTest:test_doublevesicle_initialization": {
"log": "",
"state": "passed"
},
"core:MembraneGeometryTest:test_fampenvenergy_bicelle_deriv": {
"log": "",
"state": "passed"
},
"core:MembraneGeometryTest:test_fampenvenergy_bicelle_deriv_barrel": {
"log": "",
"state": "passed"
},
"core:MembraneGeometryTest:test_fampenvenergy_doublevesicle_deriv": {
"log": "",
"state": "passed"
},
"core:MembraneGeometryTest:test_fampenvenergy_vesicle_deriv": {
"log": "",
"state": "passed"
},
"core:MembraneGeometryTest:test_fampsolvenergy_bicelle_deriv": {
"log": "",
"state": "passed"
},
"core:MembraneGeometryTest:test_vesicle_initialization": {
"log": "",
"state": "passed"
},
"core:MembraneInfoTest:test_atom_z_position": {
"log": "",
"state": "passed"
},
"core:MembraneInfoTest:test_conformation_invariant": {
"log": "",
"state": "passed"
},
"core:MembraneInfoTest:test_normal_center": {
"log": "",
"state": "passed"
},
"core:MembraneInfoTest:test_reasonable_foldtree": {
"log": "",
"state": "passed"
},
"core:MembraneInfoTest:test_reasonable_setup": {
"log": "",
"state": "passed"
},
"core:MembraneInfoTest:test_residue_z_position": {
"log": "",
"state": "passed"
},
"core:MembraneInfoTest:test_unreasonable_foldtree": {
"log": "",
"state": "passed"
},
"core:MergeAndSplitBehaviorsIOTests:test_read_merge_behaviors_from_database_file": {
"log": "",
"state": "passed"
},
"core:MergeAndSplitBehaviorsIOTests:test_read_split_behaviors_from_database_file": {
"log": "",
"state": "passed"
},
"core:MetricValueIOTest:test_bad_formatting": {
"log": "",
"state": "passed"
},
"core:MetricValueIOTest:test_bool": {
"log": "",
"state": "passed"
},
"core:MetricValueIOTest:test_int": {
"log": "",
"state": "passed"
},
"core:MetricValueIOTest:test_real": {
"log": "",
"state": "passed"
},
"core:MetricValueIOTest:test_size": {
"log": "",
"state": "passed"
},
"core:MetricValueIOTest:test_unsupported_value": {
"log": "",
"state": "passed"
},
"core:MetricValueIOTest:test_vector1_bool": {
"log": "",
"state": "passed"
},
"core:MetricValueIOTest:test_vector1_int": {
"log": "",
"state": "passed"
},
"core:MetricValueIOTest:test_vector1_real": {
"log": "",
"state": "passed"
},
"core:MetricValueIOTest:test_vector1_real_empty": {
"log": "",
"state": "passed"
},
"core:MetricValueIOTest:test_vector1_size": {
"log": "",
"state": "passed"
},
"core:MinMultiHarmonicFuncTests:test_serialize_MinMultiHarmonicFunc": {
"log": "",
"state": "passed"
},
"core:MinimizerTests:test_cmaes": {
"log": "",
"state": "passed"
},
"core:MinimizerTests:test_dfpmin": {
"log": "",
"state": "passed"
},
"core:MinimizerTests:test_dfpmin_armijo": {
"log": "",
"state": "passed"
},
"core:MinimizerTests:test_dfpmin_armijo_nonmonotone": {
"log": "",
"state": "passed"
},
"core:MinimizerTests:test_lbfgs_armijo": {
"log": "",
"state": "passed"
},
"core:MinimizerTests:test_lbfgs_armijo_nonmonotone": {
"log": "",
"state": "passed"
},
"core:MinimizerTests:test_linmin_iterated": {
"log": "",
"state": "passed"
},
"core:MinimizerTests:test_linmin_iterated_atol": {
"log": "",
"state": "passed"
},
"core:MinimizerTests:test_simple_min": {
"log": "",
"state": "passed"
},
"core:MirrorSymmetricConformationTests:test_aacomp": {
"log": "",
"state": "passed"
},
"core:MirrorSymmetricConformationTests:test_aacomp_design_subset": {
"log": "",
"state": "passed"
},
"core:MirrorSymmetricConformationTests:test_symmetric_conformation": {
"log": "",
"state": "passed"
},
"core:MixtureFuncTests:test_serialize_MixtureFunc": {
"log": "",
"state": "passed"
},
"core:MolFileIODataTests:test_extra_data": {
"log": "",
"state": "passed"
},
"core:MolFileIODataTests:test_sdfreader": {
"log": "",
"state": "passed"
},
"core:MolFileIODataTests:test_sdfreader_v3000": {
"log": "",
"state": "passed"
},
"core:MolFileIOReaderTests:test_build_rotamers": {
"log": "",
"state": "passed"
},
"core:MolFileIOReaderTests:test_read_rotamers": {
"log": "",
"state": "passed"
},
"core:MoveMapFactoryTests:test_MoveMapFactory_parse_my_tag_v1": {
"log": "",
"state": "passed"
},
"core:MoveMapFactoryTests:test_MoveMapFactory_parse_my_tag_v2": {
"log": "",
"state": "passed"
},
"core:MoveMapFactoryTests:test_MoveMapFactory_parse_my_tag_v3": {
"log": "",
"state": "passed"
},
"core:MoveMapTest:test_backbone_range_protection": {
"log": "",
"state": "passed"
},
"core:MoveMapTest:test_show": {
"log": "",
"state": "passed"
},
"core:NCAACentroidResidueTypeTests:test_centroid_aib_orn_dab_dap": {
"log": "",
"state": "passed"
},
"core:NCAADunbrackTests:test_score_with_ncaa": {
"log": "",
"state": "passed"
},
"core:NCAADunbrackTests_betanov15:test_score_with_ncaa": {
"log": "",
"state": "passed"
},
"core:NMRDummySpinlabelEnsembleTests:test_elaborate_clash_filter": {
"log": "",
"state": "passed"
},
"core:NMRDummySpinlabelEnsembleTests:test_instantiation_and_access": {
"log": "",
"state": "passed"
},
"core:NMRDummySpinlabelEnsembleTests:test_quick_clash_filter": {
"log": "",
"state": "passed"
},
"core:NMRSpinlabelTests:test_creation_and_access": {
"log": "",
"state": "passed"
},
"core:NMRSpinlabelTests:test_filter_spinlabel_ensemble_by_distance_check": {
"log": "",
"state": "passed"
},
"core:NMRSpinlabelTests:test_filter_spinlabel_ensemble_by_distance_check_and_clustering": {
"log": "",
"state": "passed"
},
"core:NMRSpinlabelTests:test_filter_spinlabel_ensemble_by_mask": {
"log": "",
"state": "passed"
},
"core:NMRSpinlabelTests:test_filter_spinlabel_ensemble_by_mask_and_clustering": {
"log": "",
"state": "passed"
},
"core:NMerSVMEnergyTests:test_eval_energy": {
"log": "",
"state": "passed"
},
"core:NPDHBondEnergyTests:test_hbonds_deriv_check_w_partial_torsional_flexibility": {
"log": "",
"state": "passed"
},
"core:NPDHBondEnergyTests:test_hbonds_w_sp2term_deriv_check_w_partial_torsional_flexibility": {
"log": "",
"state": "passed"
},
"core:NPDHBondEnergyTests:test_npd_hbond_symmetric_score_function_bad_symm_hbond_derivs": {
"log": "",
"state": "passed"
},
"core:NPDHBondEnergyTests:test_npd_hbonds_deriv_check_w_full_torsional_flexibility": {
"log": "",
"state": "passed"
},
"core:NPDHBondEnergyTests:test_npd_hbonds_deriv_check_w_full_torsional_flexibility_cyc_pep": {
"log": "",
"state": "passed"
},
"core:NPDHBondInteractionGraphTests:test_create_overcommitted_hbond_networks_dense_npdhb_ig": {
"log": "",
"state": "passed"
},
"core:NPDHBondInteractionGraphTests:test_create_overcommitted_hbond_networks_linmem_npdhb_ig": {
"log": "",
"state": "passed"
},
"core:NPDHBondInteractionGraphTests:test_create_overcommitted_hbond_networks_standard_npdhb_ig": {
"log": "",
"state": "passed"
},
"core:NPDHBondInteractionGraphTests:test_create_overcommitted_hbond_networks_w_bgnode_linmem_npdhb_ig_acc_network": {
"log": "",
"state": "passed"
},
"core:NPDHBondInteractionGraphTests:test_create_overcommitted_hbond_networks_w_bgnode_linmem_npdhb_ig_don_network": {
"log": "",
"state": "passed"
},
"core:NVlookupTests:test_lookup_values": {
"log": "",
"state": "passed"
},
"core:NVscoreTests:test_eval_energy": {
"log": "",
"state": "passed"
},
"core:NamedAngleConstraintTests:test_angle_score": {
"log": "",
"state": "passed"
},
"core:NamedAngleConstraintTests:test_named_angle_constraint_clone": {
"log": "",
"state": "passed"
},
"core:NamedAngleConstraintTests:test_serialize_NamedAngleConstraint": {
"log": "",
"state": "passed"
},
"core:NamedAtomPairConstraintTests:test_atom_pair_score": {
"log": "",
"state": "passed"
},
"core:NamedAtomPairConstraintTests:test_named_atom_pair_constraint_clone": {
"log": "",
"state": "passed"
},
"core:NamedAtomPairConstraintTests:test_serialize_NamedAtomPairConstraint": {
"log": "",
"state": "passed"
},
"core:NeighborhoodResidueSelectorTests:test_NeighbohoodResidueSelector_fail_no_focus": {
"log": "",
"state": "passed"
},
"core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_code_level_acces": {
"log": "",
"state": "passed"
},
"core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_dont_include_focus_close": {
"log": "",
"state": "passed"
},
"core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_dont_include_focus_far": {
"log": "",
"state": "passed"
},
"core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_parse_my_tag_selector": {
"log": "",
"state": "passed"
},
"core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_parse_my_tag_str": {
"log": "",
"state": "passed"
},
"core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_uninitialized_pose": {
"log": "",
"state": "passed"
},
"core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_use_last_provided_source_of_focus": {
"log": "",
"state": "passed"
},
"core:NetChargeEnergyTests_packer:test_energy_annealing": {
"log": "",
"state": "passed"
},
"core:NetChargeEnergyTests_packer_symm:test_energy_annealing_symmetric": {
"log": "",
"state": "passed"
},
"core:NetChargeEnergyTests_tailfxns:test_constant_tailfxns": {
"log": "",
"state": "passed"
},
"core:NetChargeEnergyTests_tailfxns:test_linear_tailfxns": {
"log": "",
"state": "passed"
},
"core:NetChargeEnergyTests_tailfxns:test_quadratic_tailfxns": {
"log": "",
"state": "passed"
},
"core:NomenclatureManagerTestsWCL:test_default_mainchain_connectivity_from_pdb_code": {
"log": "",
"state": "passed"
},
"core:NomenclatureManagerTestsWCL:test_nomenclature_manager_test_w_command_line_alt_codes": {
"log": "",
"state": "passed"
},
"core:NomenclatureManagerTestsWCL:test_nomenclature_manager_three_name_conflicts": {
"log": "",
"state": "passed"
},
"core:NomenclatureManagerTestsWCL:test_pdb_code_from_rosetta_name": {
"log": "",
"state": "passed"
},
"core:NomenclatureManagerTestsWOCL:test_rosetta_names_from_pdb_code": {
"log": "",
"state": "passed"
},
"core:NonResidueTypeConstraintTests:test_serialize_NonResidueTypeConstraint": {
"log": "",
"state": "passed"
},
"core:NotJumpSelectorTests:test_NotJumpSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:NotJumpSelectorTests:test_NotJumpSelector_parse_my_tag_no_provided_selectors": {
"log": "",
"state": "passed"
},
"core:NotJumpSelectorTests:test_NotJumpSelector_parse_my_tag_selectors_not_in_datamap": {
"log": "",
"state": "passed"
},
"core:NotJumpSelectorTests:test_not_jump_selector_odd_lots_of_jumps": {
"log": "",
"state": "passed"
},
"core:NotJumpSelectorTests:test_not_jump_selector_odd_no_jumps": {
"log": "",
"state": "passed"
},
"core:NotResidueSelectorTests:test_NotResidueSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:NotResidueSelectorTests:test_NotResidueSelector_parse_my_tag_no_provided_selectors": {
"log": "",
"state": "passed"
},
"core:NotResidueSelectorTests:test_NotResidueSelector_parse_my_tag_selectors_not_in_datamap": {
"log": "",
"state": "passed"
},
"core:NotResidueSelectorTests:test_not_residue_selector_odd": {
"log": "",
"state": "passed"
},
"core:NumNeighborsSelectorTests:test_num_neighbors_selector_1": {
"log": "",
"state": "passed"
},
"core:NumNeighborsSelectorTests:test_num_neighbors_selector_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:NumNeighborsSelectorTests:test_num_neighbors_selector_parse_my_tag_w_defaults": {
"log": "",
"state": "passed"
},
"core:OccludedHbondSolEnergyTests:test_occ_sol_fitted_deriv_check_w_partial_flexibility": {
"log": "",
"state": "passed"
},
"core:OccludedHbondSolEnergyTests:test_occ_sol_fitted_deriv_check_w_total_flexibility": {
"log": "",
"state": "passed"
},
"core:OccludedHbondSolEnergyTests:test_occ_sol_fitted_start_score_start_func_match_w_partial_flexibility": {
"log": "",
"state": "passed"
},
"core:OccludedHbondSolEnergyTests:test_occ_sol_fitted_start_score_start_func_match_w_total_flexibility": {
"log": "",
"state": "passed"
},
"core:OmegaPreferencesFunctionTests:test_omega_preferences_derivatives": {
"log": "",
"state": "passed"
},
"core:OmegaPreferencesFunctionTests:test_omega_preferences_function": {
"log": "",
"state": "passed"
},
"core:OmegaTetherTests:test_alpha_aa_omega": {
"log": "",
"state": "passed"
},
"core:OmegaTetherTests:test_beta_aa_omega_min": {
"log": "",
"state": "passed"
},
"core:OmegaTetherTests:test_oligourea_omega": {
"log": "",
"state": "passed"
},
"core:OmegaTetherTests:test_oligourea_omega_min": {
"log": "",
"state": "passed"
},
"core:OperateOnResidueSubsetTests:test_disable_odd_residues_init_by_ctor": {
"log": "",
"state": "passed"
},
"core:OperateOnResidueSubsetTests:test_disable_odd_residues_init_w_functions": {
"log": "",
"state": "passed"
},
"core:OperateOnResidueSubsetTests:test_oors_parse_tag_1": {
"log": "",
"state": "passed"
},
"core:OperateOnResidueSubsetTests:test_oors_parse_tag_2": {
"log": "",
"state": "passed"
},
"core:OrJumpSelectorTests:test_OrJumpSelector_fail_parse_subtag": {
"log": "",
"state": "passed"
},
"core:OrJumpSelectorTests:test_OrJumpSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:OrJumpSelectorTests:test_OrJumpSelector_parse_my_tag_no_provided_selectors": {
"log": "",
"state": "passed"
},
"core:OrJumpSelectorTests:test_OrJumpSelector_parse_my_tag_selectors_not_in_datamap": {
"log": "",
"state": "passed"
},
"core:OrJumpSelectorTests:test_OrJumpSelector_parse_subtag_v1": {
"log": "",
"state": "passed"
},
"core:OrJumpSelectorTests:test_OrJumpSelector_parse_subtag_v2": {
"log": "",
"state": "passed"
},
"core:OrJumpSelectorTests:test_and_jump_selector_odd_1mod5_lots_of_jumps": {
"log": "",
"state": "passed"
},
"core:OrJumpSelectorTests:test_and_jump_selector_odd_1mod5_no_jumps": {
"log": "",
"state": "passed"
},
"core:OrResidueSelectorTests:test_AndResidueSelector_parse_my_tag_selectors_not_in_datamap": {
"log": "",
"state": "passed"
},
"core:OrResidueSelectorTests:test_OrResidueSelector_fail_parse_subtag": {
"log": "",
"state": "passed"
},
"core:OrResidueSelectorTests:test_OrResidueSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:OrResidueSelectorTests:test_OrResidueSelector_parse_my_tag_no_provided_selectors": {
"log": "",
"state": "passed"
},
"core:OrResidueSelectorTests:test_OrResidueSelector_parse_subtag": {
"log": "",
"state": "passed"
},
"core:OrResidueSelectorTests:test_or_residue_selector_odd_1mod5": {
"log": "",
"state": "passed"
},
"core:OrbitalTests:test_orbital_initialization": {
"log": "",
"state": "passed"
},
"core:OrbitalTests:test_orbital_setters": {
"log": "",
"state": "passed"
},
"core:OrbitalTypeSetTests:test_operator_brackets": {
"log": "",
"state": "passed"
},
"core:OrbitalTypeSetTests:test_orbital_type_index": {
"log": "",
"state": "passed"
},
"core:OrbitalsEnergyTests:test_make_compiler_happy": {
"log": "",
"state": "passed"
},
"core:OrbitalsEnergyTests:test_orbital_deriv_check_w_partial_flexibility": {
"log": "",
"state": "passed"
},
"core:OrbitalsEnergyTests:test_orbital_deriv_check_w_total_flexibility_all": {
"log": "",
"state": "passed"
},
"core:OrbitalsEnergyTests:test_orbital_deriv_check_w_total_flexibility_orbitals_hpol_bb": {
"log": "",
"state": "passed"
},
"core:OrbitalsEnergyTests:test_orbital_deriv_check_w_total_flexibility_pci_cation_pi": {
"log": "",
"state": "passed"
},
"core:OrbitalsEnergyTests:test_orbital_deriv_check_w_total_flexibility_pci_hbond": {
"log": "",
"state": "passed"
},
"core:OrbitalsEnergyTests:test_orbital_deriv_check_w_total_flexibility_pci_pi_pi": {
"log": "",
"state": "passed"
},
"core:OrbitalsEnergyTests:test_orbital_deriv_check_w_total_flexibility_pci_salt_bridge": {
"log": "",
"state": "passed"
},
"core:OrbitalsEnergyTests:test_orbital_scoring_function_values": {
"log": "",
"state": "passed"
},
"core:OrbitalsEnergyTests:test_orbital_start_score_start_func_match_w_total_flexibility": {
"log": "",
"state": "passed"
},
"core:OrderedFragSetTest:test_frag_iterator": {
"log": "",
"state": "passed"
},
"core:PCSDataSymmetryTests:test_PCSData_score_calculation_all_tags_automatic_symmetry_deduction": {
"log": "",
"state": "passed"
},
"core:PCSDataSymmetryTests:test_PCSData_score_calculation_all_tags_manual_symmetry_handling": {
"log": "",
"state": "passed"
},
"core:PCSDataTests:test_PCSData_creation_by_NMRDataFactory": {
"log": "",
"state": "passed"
},
"core:PCSDataTests:test_PCSData_instantiation": {
"log": "",
"state": "passed"
},
"core:PCSDataTests:test_PCSData_score_calculation_with_gridsearch": {
"log": "",
"state": "passed"
},
"core:PCSDataTests:test_PCSData_score_calculation_with_spinlabel": {
"log": "",
"state": "passed"
},
"core:PCSDataTests:test_scaled_PCSData_score_calculation": {
"log": "",
"state": "passed"
},
"core:PCSMultiSetTests:test_PCSMultiSet_instantiation_and_getters": {
"log": "",
"state": "passed"
},
"core:PCSMultiSetTests:test_PCSMultiSet_score_calculation_from_fixed_tensor": {
"log": "",
"state": "passed"
},
"core:PCSMultiSetTests:test_PCSMultiSet_score_calculation_with_gridsearch": {
"log": "",
"state": "passed"
},
"core:PCSMultiSetTests:test_PCSMultiSet_score_calculation_with_spinlabel": {
"log": "",
"state": "passed"
},
"core:PCSSingleSetSymmetryTests:test_calc_tensor_and_score_nls_automatic_symmetry_deduction": {
"log": "",
"state": "passed"
},
"core:PCSSingleSetSymmetryTests:test_calc_tensor_and_score_nls_manual_symmetry_handling": {
"log": "",
"state": "passed"
},
"core:PCSSingleSetSymmetryTests:test_calc_tensor_and_score_svd_automatic_symmetry_deduction": {
"log": "",
"state": "passed"
},
"core:PCSSingleSetSymmetryTests:test_calc_tensor_and_score_svd_manual_symmetry_handling": {
"log": "",
"state": "passed"
},
"core:PCSSingleSetTests:test_PCSSingleSet_instantiation_and_getters": {
"log": "",
"state": "passed"
},
"core:PCSSingleSetTests:test_PCSSingleSet_instantiation_and_scaling": {
"log": "",
"state": "passed"
},
"core:PCSSingleSetTests:test_calc_tensor_and_score_nls": {
"log": "",
"state": "passed"
},
"core:PCSSingleSetTests:test_calc_tensor_and_score_nls_fixed_XaxXrh": {
"log": "",
"state": "passed"
},
"core:PCSSingleSetTests:test_calc_tensor_and_score_nls_svd_different_weightings": {
"log": "",
"state": "passed"
},
"core:PCSSingleSetTests:test_calc_tensor_and_score_svd": {
"log": "",
"state": "passed"
},
"core:PCSSingleSetTests:test_calc_tensor_and_score_svd_on_scaled_data": {
"log": "",
"state": "passed"
},
"core:PDBInfoTests:test_PDBInfo_append_residue": {
"log": "",
"state": "passed"
},
"core:PDBInfoTests:test_PDBInfo_chain_sequences": {
"log": "",
"state": "passed"
},
"core:PDBInfoTests:test_PDBInfo_delete_residue": {
"log": "",
"state": "passed"
},
"core:PDBInfoTests:test_PDBInfo_detach_on_destroy": {
"log": "",
"state": "passed"
},
"core:PDBInfoTests:test_PDBInfo_en_masse_residue_mutators": {
"log": "",
"state": "passed"
},
"core:PDBInfoTests:test_PDBInfo_from_input_pdb": {
"log": "",
"state": "passed"
},
"core:PDBInfoTests:test_PDBInfo_from_input_pdb_PDBPoseMap": {
"log": "",
"state": "passed"
},
"core:PDBInfoTests:test_PDBInfo_observe_append": {
"log": "",
"state": "passed"
},
"core:PDBInfoTests:test_PDBInfo_observe_attach_detach": {
"log": "",
"state": "passed"
},
"core:PDBInfoTests:test_PDBInfo_observe_delete": {
"log": "",
"state": "passed"
},
"core:PDBInfoTests:test_PDBInfo_observe_prepend": {
"log": "",
"state": "passed"
},
"core:PDBInfoTests:test_PDBInfo_observe_replace": {
"log": "",
"state": "passed"
},
"core:PDBInfoTests:test_PDBInfo_prepend_residue": {
"log": "",
"state": "passed"
},
"core:PDBInfoTests:test_PDBInfo_resize": {
"log": "",
"state": "passed"
},
"core:PDBInfoTests:test_PDBInfo_silent_files": {
"log": "",
"state": "passed"
},
"core:PDBInfoTests:test_PDBInfo_single_residue_chain_mutator": {
"log": "",
"state": "passed"
},
"core:PDBInfoTests:test_PDBInfo_single_residue_icode_mutator": {
"log": "",
"state": "passed"
},
"core:PDBInfoTests:test_PDBInfo_single_residue_number_mutator": {
"log": "",
"state": "passed"
},
"core:PDBInfoTests:test_PDBInfo_single_residue_resinfo_mutator": {
"log": "",
"state": "passed"
},
"core:PDBPoseMapTests:test_PDBPoseMap_erase": {
"log": "",
"state": "passed"
},
"core:PDBPoseMapTests:test_PDBPoseMap_find": {
"log": "",
"state": "passed"
},
"core:PDBPoseMapTests:test_PDBPoseMap_insert": {
"log": "",
"state": "passed"
},
"core:PDBReaderTests:test_store_chain_sequence_record_in_sfr": {
"log": "",
"state": "passed"
},
"core:PDBReaderTests:test_store_cis_peptide_record_in_sfr": {
"log": "",
"state": "passed"
},
"core:PDBReaderTests:test_store_formula_record_in_sfr": {
"log": "",
"state": "passed"
},
"core:PDBReaderTests:test_store_heterogen_name_record_in_sfr_and_store_base_residue_type_name_in_sfr": {
"log": "",
"state": "passed"
},
"core:PDBReaderTests:test_store_heterogen_synonym_record_in_sfr": {
"log": "",
"state": "passed"
},
"core:PDBReaderTests:test_store_link_record_in_sfr": {
"log": "",
"state": "passed"
},
"core:PDBReaderTests:test_store_mod_res_record_in_sfr": {
"log": "",
"state": "passed"
},
"core:PDBReaderTests:test_store_ssbond_record_in_sfr": {
"log": "",
"state": "passed"
},
"core:PDBReaderTests:test_store_unknown_records_in_sfr": {
"log": "",
"state": "passed"
},
"core:PDBSilentStruct_Tests:test_pdb_silent_disulfide": {
"log": "",
"state": "passed"
},
"core:PDBSilentStruct_Tests:test_save_and_restore": {
"log": "",
"state": "passed"
},
"core:PDB_IO:test_pdb_io": {
"log": "",
"state": "passed"
},
"core:PDB_IO:test_pdb_io_seqres": {
"log": "",
"state": "passed"
},
"core:PDB_IO:test_pdb_read_d_aa": {
"log": "",
"state": "passed"
},
"core:PDB_IO:test_pdb_read_partial_residues": {
"log": "",
"state": "passed"
},
"core:PDB_w_glycans_IO:test_glycan_fragment": {
"log": "",
"state": "passed"
},
"core:PDB_w_glycans_IO:test_pdb_io": {
"log": "",
"state": "passed"
},
"core:PREDataTests:test_PREData_creation_by_NMRFactory": {
"log": "",
"state": "passed"
},
"core:PREDataTests:test_PREData_instantiation": {
"log": "",
"state": "passed"
},
"core:PREDataTests:test_pre_score_calculation_with_explicit_spinlabel_coordinates": {
"log": "",
"state": "passed"
},
"core:PREDataTests:test_pre_score_calculation_with_implicit_spinlabel_ensemble": {
"log": "",
"state": "passed"
},
"core:PREDataTests:test_pre_score_calculation_with_metal_ion_gridsearch": {
"log": "",
"state": "passed"
},
"core:PREMultiSetTests:test_PREMultiSet_instantiation_and_data_scaling": {
"log": "",
"state": "passed"
},
"core:PREMultiSetTests:test_PREMultiSet_instantiation_and_getters_and_setters": {
"log": "",
"state": "passed"
},
"core:PREMultiSetTests:test_find_spinlabel_position_and_pre_score_calculation": {
"log": "",
"state": "passed"
},
"core:PREMultiSetTests:test_pre_r2_score_calculation_with_spinlabel": {
"log": "",
"state": "passed"
},
"core:PREMultiSetTests:test_pre_score_calculation_with_gridsearch": {
"log": "",
"state": "passed"
},
"core:P_AA_EnergyTests:test_eval_energy": {
"log": "",
"state": "passed"
},
"core:P_AA_pp_EnergyTests:test_paapp_deriv_check": {
"log": "",
"state": "passed"
},
"core:P_AA_pp_Energy_SymGlyTests:test_eval_symm_energy": {
"log": "",
"state": "passed"
},
"core:PackerTaskTests:test_PackerTask_init_from_options_actually_reads_option_collection": {
"log": "",
"state": "passed"
},
"core:PackerTaskTests:test_PackerTask_initialize_from_options_and_list_options_read_are_in_sync": {
"log": "",
"state": "passed"
},
"core:PackerTaskTests:test_ResidueLevelTask_init_from_options_actually_reads_option_collection": {
"log": "",
"state": "passed"
},
"core:PackerTaskTests:test_ResidueLevelTask_initialize_from_options_and_list_options_read_are_in_sync": {
"log": "",
"state": "passed"
},
"core:PackerTaskTests:test_packer_task_and_extrachi_cutoff": {
"log": "",
"state": "passed"
},
"core:PackerTaskTests:test_packer_task_default_behavior_design_all_positions": {
"log": "",
"state": "passed"
},
"core:PackerTaskTests:test_packer_task_fix_his_tautomer": {
"log": "",
"state": "passed"
},
"core:PackerTaskTests:test_packer_task_name3_decision_making": {
"log": "",
"state": "passed"
},
"core:PackerTaskTests:test_packer_task_or_ex1_commutativity": {
"log": "",
"state": "passed"
},
"core:PackerTaskTests:test_packer_task_or_ex1aro_commutativity": {
"log": "",
"state": "passed"
},
"core:PackerTaskTests:test_packer_task_or_ex2_commutativity": {
"log": "",
"state": "passed"
},
"core:PackerTaskTests:test_packer_task_or_ex2aro_commutativity": {
"log": "",
"state": "passed"
},
"core:PackerTaskTests:test_packer_task_or_ex3_commutativity": {
"log": "",
"state": "passed"
},
"core:PackerTaskTests:test_packer_task_or_ex4_commutativity": {
"log": "",
"state": "passed"
},
"core:PackerTaskTests:test_packer_task_restrict_to_repacking": {
"log": "",
"state": "passed"
},
"core:PackerTaskTests:test_packer_task_update_commutative_restrict_to_repacking1": {
"log": "",
"state": "passed"
},
"core:PackerTaskTests:test_packer_task_update_commutative_restrict_to_repacking2": {
"log": "",
"state": "passed"
},
"core:PairEnergyTests:test_pairE_deriv_check_w_partial_flexibility": {
"log": "",
"state": "passed"
},
"core:PairEnergyTests:test_pairE_deriv_check_w_total_flexibility": {
"log": "",
"state": "passed"
},
"core:PairEnergyTests:test_pairE_start_score_start_func_match_w_partial_flexibility": {
"log": "",
"state": "passed"
},
"core:PairEnergyTests:test_pairE_start_score_start_func_match_w_total_flexibility": {
"log": "",
"state": "passed"
},
"core:PartialAtomIDTests:test_construct_fully_resolved_partial_atom_id": {
"log": "",
"state": "passed"
},
"core:PartialAtomIDTests:test_construct_partially_resolved_partial_atom_id": {
"log": "",
"state": "passed"
},
"core:PartialAtomIDTests:test_partial_atom_id_default_constructor": {
"log": "",
"state": "passed"
},
"core:PartialAtomIDTests:test_partial_atom_id_invalid_from_full_ctor": {
"log": "",
"state": "passed"
},
"core:PartialAtomIDTests:test_partial_atom_id_invalid_from_partial_ctor": {
"log": "",
"state": "passed"
},
"core:PartialAtomIDTests:test_partial_atom_id_ordering": {
"log": "",
"state": "passed"
},
"core:PartialAtomIDTests:test_partial_atom_id_set_complete": {
"log": "",
"state": "passed"
},
"core:PartialAtomIDTests:test_partial_atom_id_set_partial": {
"log": "",
"state": "passed"
},
"core:PartialAtomIDTests:test_partial_atom_id_stream_output": {
"log": "",
"state": "passed"
},
"core:ParticleSwarmMinimizerTests:test_simple_multifunc": {
"log": "",
"state": "passed"
},
"core:PeptoidDesignTests:test_design_001_601_602": {
"log": "",
"state": "passed"
},
"core:PeptoidDesignTests:test_design_hydrophobic_aa_001_601_602": {
"log": "",
"state": "passed"
},
"core:PeptoidResidueTypeTests:test_lower_connect_dependence": {
"log": "",
"state": "passed"
},
"core:PeriodicFuncTests:test_serialize_PeriodicFunc": {
"log": "",
"state": "passed"
},
"core:PhiSelectorTests:test_phiselector_negativephi": {
"log": "",
"state": "passed"
},
"core:PhiSelectorTests:test_phiselector_negativephi_no_ignore_unconnected_upper": {
"log": "",
"state": "passed"
},
"core:PhiSelectorTests:test_phiselector_positivephi": {
"log": "",
"state": "passed"
},
"core:PolyaramidBackboneMinimizeTests:test_min_phi_succeeds_meta_ala": {
"log": "",
"state": "passed"
},
"core:PolyaramidBackboneMinimizeTests:test_min_phi_succeeds_ortho_ala": {
"log": "",
"state": "passed"
},
"core:PolyaramidBackboneMinimizeTests:test_min_phi_succeeds_para_ala": {
"log": "",
"state": "passed"
},
"core:PolyaramidBackboneMinimizeTests:test_min_psi_succeeds_meta_ala": {
"log": "",
"state": "passed"
},
"core:PolyaramidBackboneMinimizeTests:test_min_psi_succeeds_ortho_ala": {
"log": "",
"state": "passed"
},
"core:PolyaramidBackboneMinimizeTests:test_min_psi_succeeds_para_ala": {
"log": "",
"state": "passed"
},
"core:PolylinearInterpolationTests:test_1D": {
"log": "",
"state": "passed"
},
"core:PolylinearInterpolationTests:test_1D_wraparound": {
"log": "",
"state": "passed"
},
"core:PolylinearInterpolationTests:test_polylinear_interpolation_2D_derivs": {
"log": "",
"state": "passed"
},
"core:PolylinearInterpolationTests:test_polylinear_interpolation_3D_derivs": {
"log": "",
"state": "passed"
},
"core:PolylinearInterpolationTests:test_polylinear_interpolation_3D_derivs_wraparound": {
"log": "",
"state": "passed"
},
"core:PolylinearInterpolationTests:test_polylinear_interpolation_lysine_derivs": {
"log": "",
"state": "passed"
},
"core:PoseFromPDBLoaderTests:test_PoseFromPDBLoader": {
"log": "",
"state": "passed"
},
"core:PoseFromSFRBuilderTests:test_1rgr": {
"log": "",
"state": "passed"
},
"core:PoseFromSFRBuilderTests:test_build_trpcage_pdb": {
"log": "",
"state": "passed"
},
"core:PoseFromSFRBuilderTests:test_read_cyclic_peptide_with_link_record": {
"log": "",
"state": "passed"
},
"core:PoseFromSFRBuilderTests:test_read_in_acylated_nterm_residue": {
"log": "",
"state": "passed"
},
"core:PoseFromSFRBuilderTests:test_read_in_res_both_acetylated_and_cterm": {
"log": "",
"state": "passed"
},
"core:PoseFromSFRBuilderTests:test_read_pose_without_terminal_variant_types": {
"log": "",
"state": "passed"
},
"core:PoseFromSFRBuilderTests:test_splitting_of_residues": {
"log": "",
"state": "passed"
},
"core:PoseIteratorTests:test_enumerate1": {
"log": "",
"state": "passed"
},
"core:PoseIteratorTests:test_iterators": {
"log": "",
"state": "passed"
},
"core:PoseIteratorTests:test_iterators_with_selectors": {
"log": "",
"state": "passed"
},
"core:PoseRNAUtilTests:test_remove_nonnaturals": {
"log": "",
"state": "passed"
},
"core:PoseResidueTypeSetTests:test_addition": {
"log": "",
"state": "passed"
},
"core:PoseResidueTypeSetTests:test_get_all_types_with_variants_aa": {
"log": "",
"state": "passed"
},
"core:PoseResidueTypeSetTests:test_local_vs_default": {
"log": "",
"state": "passed"
},
"core:PoseTests:test_Pose_mainchain_torsions": {
"log": "",
"state": "passed"
},
"core:PoseTests:test_Pose_observer": {
"log": "",
"state": "passed"
},
"core:PoseTests:test_append_pose_by_jump": {
"log": "",
"state": "passed"
},
"core:PoseTests:test_cutpoint_bond_rotation": {
"log": "",
"state": "passed"
},
"core:PoseTests:test_serialize_pose": {
"log": "",
"state": "passed"
},
"core:PoseTests:test_update_cutpoint_virtual_atoms_if_connected": {
"log": "",
"state": "passed"
},
"core:PoseTests:test_update_cutpoint_virtual_atoms_when_bond_declared": {
"log": "",
"state": "passed"
},
"core:PoseTests:test_update_cutpoint_virtual_atoms_when_cutpoint_variant_added": {
"log": "",
"state": "passed"
},
"core:PoseTests:test_update_residue_neighbors": {
"log": "",
"state": "passed"
},
"core:PoseToStructFileRepConverterTests:test_assignment_of_new_chainIDs_for_ligands": {
"log": "",
"state": "passed"
},
"core:PoseToStructFileRepConverterTests:test_conect_records": {
"log": "",
"state": "passed"
},
"core:PoseToStructFileRepConverterTests:test_foldtree_records": {
"log": "",
"state": "passed"
},
"core:PoseToStructFileRepConverterTests:test_membrane_hetatm": {
"log": "",
"state": "passed"
},
"core:PoseToStructFileRepConverterTests:test_title_section_records": {
"log": "",
"state": "passed"
},
"core:PoseToStructFileRepConverterTests:test_torsion_records": {
"log": "",
"state": "passed"
},
"core:PoseUtilTests:test_chain_designations": {
"log": "",
"state": "passed"
},
"core:PoseUtilTests:test_chainid_functions": {
"log": "",
"state": "passed"
},
"core:PoseUtilTests:test_chainletter_functions": {
"log": "",
"state": "passed"
},
"core:PoseUtilTests:test_compare_atom_coordinates": {
"log": "",
"state": "passed"
},
"core:PoseUtilTests:test_conformation_sha1": {
"log": "",
"state": "passed"
},
"core:PoseUtilTests:test_fix_pdbinfo_damaged_by_insertion": {
"log": "",
"state": "passed"
},
"core:PoseUtilTests:test_jump_functions": {
"log": "",
"state": "passed"
},
"core:PoseUtilTests:test_pose_float_map": {
"log": "",
"state": "passed"
},
"core:PoseUtilTests:test_pose_string_map": {
"log": "",
"state": "passed"
},
"core:PoseUtilTests:test_reasonable_foldtree": {
"log": "",
"state": "passed"
},
"core:PoseUtilTests:test_renumber_pdbinfo_based_on_conf_chains": {
"log": "",
"state": "passed"
},
"core:PoseUtilTests:test_unique_chains": {
"log": "",
"state": "passed"
},
"core:PoseUtilTests:test_xyzVector_HashOperations": {
"log": "",
"state": "passed"
},
"core:ProClosureEnergyTests:test_eval_energy": {
"log": "",
"state": "passed"
},
"core:ProClosureEnergyTests:test_eval_energy_noring": {
"log": "",
"state": "passed"
},
"core:ProClosureEnergyTests:test_proclose_D_oligourea": {
"log": "",
"state": "passed"
},
"core:ProClosureEnergyTests:test_proclose_L_oligourea": {
"log": "",
"state": "passed"
},
"core:ProClosureEnergyTests:test_proclose_deriv_check_w_total_flexibility": {
"log": "",
"state": "passed"
},
"core:ProClosureEnergyTests:test_proclose_start_score_start_func_match_w_total_flexibility": {
"log": "",
"state": "passed"
},
"core:ProClosureEnergyTests_noringclose:test_proclose_deriv_check_w_total_flexibility_noring": {
"log": "",
"state": "passed"
},
"core:ProteinSilentTests:test_arbitrary_energies": {
"log": "",
"state": "passed"
},
"core:ProteinSilentTests:test_redundant_tags": {
"log": "",
"state": "passed"
},
"core:ProteinSilentTests:test_reverse_score_cut": {
"log": "",
"state": "passed"
},
"core:ProteinSilentTests:test_save_and_restore": {
"log": "",
"state": "passed"
},
"core:ProteinSilentTests:test_save_and_restore_centroid": {
"log": "",
"state": "passed"
},
"core:ProteinSilentTests:test_score_cut": {
"log": "",
"state": "passed"
},
"core:ProteinSilentTests:test_strict_column_mode": {
"log": "",
"state": "passed"
},
"core:ProteinSilentTests:test_string_from_pose": {
"log": "",
"state": "passed"
},
"core:ProteinSilentTests:test_string_into_pose": {
"log": "",
"state": "passed"
},
"core:RDCDataSymmetryTests:test_RDCData_score_calculation_all_media_automatic_symmetry_deduction": {
"log": "",
"state": "passed"
},
"core:RDCDataSymmetryTests:test_RDCData_score_calculation_all_media_manual_symmetry_handling": {
"log": "",
"state": "passed"
},
"core:RDCDataTests:test_RDCData_creation_by_NMRDataFactory": {
"log": "",
"state": "passed"
},
"core:RDCDataTests:test_RDCData_instantiation": {
"log": "",
"state": "passed"
},
"core:RDCDataTests:test_RDCData_score_calculation_all_media": {
"log": "",
"state": "passed"
},
"core:RDCMultiSetSymmetryTests:test_score_calculation_by_nls_automatic_symmetry_deduction": {
"log": "",
"state": "passed"
},
"core:RDCMultiSetSymmetryTests:test_score_calculation_by_nls_manual_symmetry_handling": {
"log": "",
"state": "passed"
},
"core:RDCMultiSetSymmetryTests:test_score_calculation_by_svd_automatic_symmetry_deduction": {
"log": "",
"state": "passed"
},
"core:RDCMultiSetSymmetryTests:test_score_calculation_by_svd_manual_symmetry_handling": {
"log": "",
"state": "passed"
},
"core:RDCMultiSetTests:test_RDCMultiSet_instantiation": {
"log": "",
"state": "passed"
},
"core:RDCMultiSetTests:test_score_calculation_by_nls": {
"log": "",
"state": "passed"
},
"core:RDCMultiSetTests:test_score_calculation_by_nls_da": {
"log": "",
"state": "passed"
},
"core:RDCMultiSetTests:test_score_calculation_by_nls_r": {
"log": "",
"state": "passed"
},
"core:RDCMultiSetTests:test_score_calculation_by_svd": {
"log": "",
"state": "passed"
},
"core:RDCMultiSetTests:test_score_calculation_with_normalized_data": {
"log": "",
"state": "passed"
},
"core:RDMolToRestypeTests:test_convert": {
"log": "",
"state": "passed"
},
"core:RG_Energy_Tests:test_eval_energy": {
"log": "",
"state": "passed"
},
"core:RNA_FA_ElecEnergyTests:test_rnaelec_deriv_check_w_full_torsional_flexibility_smoothed_wo_ddd": {
"log": "",
"state": "passed"
},
"core:RNA_FA_ElecEnergyTests:test_rnaelec_nblist_autoupdate_no_smoothing": {
"log": "",
"state": "passed"
},
"core:RNA_FA_ElecEnergyTests:test_score_rna_pdb": {
"log": "",
"state": "passed"
},
"core:RNA_ScoreFunctionTest:test_no_full_model_info_scoring": {
"log": "",
"state": "passed"
},
"core:RTConstraintTests:test_rt_constraint_clone": {
"log": "",
"state": "passed"
},
"core:RTConstraintTests:test_rt_constraint_equality_operator": {
"log": "",
"state": "passed"
},
"core:RTConstraintTests:test_rt_constraint_score": {
"log": "",
"state": "passed"
},
"core:RTConstraintTests:test_rt_constraint_serialize": {
"log": "",
"state": "passed"
},
"core:RTConstraintTests:test_rt_constraint_zero_score": {
"log": "",
"state": "passed"
},
"core:RamaPreProEnergyTests:test_atoms_w_dof_deriv": {
"log": "",
"state": "passed"
},
"core:RamaPreProEnergyTests:test_rama_cart_deriv_check_partial_flexibility": {
"log": "",
"state": "passed"
},
"core:RamaPreProEnergyTests:test_rama_deriv_check_full_flexibility": {
"log": "",
"state": "passed"
},
"core:RamaPreProEnergyTests:test_rama_deriv_check_partial_flexibility": {
"log": "",
"state": "passed"
},
"core:RamaPreProEnergyTests:test_setup_for_minimizing_with_rama_and_full_bb_flex": {
"log": "",
"state": "passed"
},
"core:RamaPreProEnergyTests:test_setup_for_minimizing_with_rama_and_partial_bbflex": {
"log": "",
"state": "passed"
},
"core:RamaPreProEnergyTests:test_symm_rama_cart_deriv_check_partial_flexibility": {
"log": "",
"state": "passed"
},
"core:RamaPreProTests:test_correct_score_stored": {
"log": "",
"state": "passed"
},
"core:RamaPreProTests:test_get_atoms_w_dof_derivatives": {
"log": "",
"state": "passed"
},
"core:RamaPreProTests:test_get_mainchain_torsions_covered_bb_aa": {
"log": "",
"state": "passed"
},
"core:RamaPreProTests:test_random_phipsi_canonical": {
"log": "",
"state": "passed"
},
"core:RamaPreProTests:test_random_phipsi_canonical_d_aa": {
"log": "",
"state": "passed"
},
"core:RamaPreProTests:test_random_phipsi_canonical_d_aa_prepro": {
"log": "",
"state": "passed"
},
"core:RamaPreProTests:test_random_phipsi_canonical_prepro": {
"log": "",
"state": "passed"
},
"core:RamaPreProTests:test_random_phipsi_noncanonical": {
"log": "",
"state": "passed"
},
"core:RamaPreProTests:test_random_phipsi_noncanonical_d_aa": {
"log": "",
"state": "passed"
},
"core:RamaPreProTests:test_random_phipsi_noncanonical_d_aa_prepro": {
"log": "",
"state": "passed"
},
"core:RamaPreProTests:test_random_phipsi_noncanonical_prepro": {
"log": "",
"state": "passed"
},
"core:RamaPreProTests_oligourea:test_random_tors_canonical": {
"log": "",
"state": "passed"
},
"core:RamaPreProTests_oligourea:test_random_tors_canonical_d_aa": {
"log": "",
"state": "passed"
},
"core:RamaPreProTests_oligourea:test_random_tors_canonical_d_aa_prepro": {
"log": "",
"state": "passed"
},
"core:RamaPreProTests_oligourea:test_random_tors_canonical_prepro": {
"log": "",
"state": "passed"
},
"core:RamaPreProTests_symmgly:test_random_phipsi_gly": {
"log": "",
"state": "passed"
},
"core:RamaPreProTests_symmgly:test_random_phipsi_gly_invert": {
"log": "",
"state": "passed"
},
"core:RamaPreProTests_symmgly:test_random_phipsi_gly_prepro": {
"log": "",
"state": "passed"
},
"core:RamaPreProTests_symmgly:test_random_phipsi_gly_prepro_invert": {
"log": "",
"state": "passed"
},
"core:Ramachandran2BTests:test_rama2b_left_cdf_creation": {
"log": "",
"state": "passed"
},
"core:Ramachandran2BTests:test_rama2b_left_cdf_creation_for_ppo_torbin_A": {
"log": "",
"state": "passed"
},
"core:Ramachandran2BTests:test_rama2b_right_cdf_creation": {
"log": "",
"state": "passed"
},
"core:Ramachandran2BTests:test_rama2b_right_cdf_creation_for_ppo_torbin_A": {
"log": "",
"state": "passed"
},
"core:Ramachandran2BTests:test_random_phipsi_from_rama_by_torsion_bin_left": {
"log": "",
"state": "passed"
},
"core:Ramachandran2BTests:test_random_phipsi_from_rama_by_torsion_bin_right": {
"log": "",
"state": "passed"
},
"core:RamachandranEnergyTests:test_rama_deriv_check": {
"log": "",
"state": "passed"
},
"core:RamachandranEnergyTests:test_setup_for_minimizing_with_rama_and_full_bb_flex": {
"log": "",
"state": "passed"
},
"core:RamachandranEnergyTests:test_setup_for_minimizing_with_rama_and_partial_bbflex": {
"log": "",
"state": "passed"
},
"core:RamachandranEnergy_SymGlyTests:test_eval_symm_energy": {
"log": "",
"state": "passed"
},
"core:RamachandranPowerTest:test_eval_rama_score_residue": {
"log": "",
"state": "passed"
},
"core:RamachandranTest:test_eval_rama_score_residue": {
"log": "",
"state": "passed"
},
"core:RamachandranTest:test_phipsi_in_allowed_rama": {
"log": "",
"state": "passed"
},
"core:RamachandranTest:test_rama_cdf_creation": {
"log": "",
"state": "passed"
},
"core:RamachandranTest:test_rama_cdf_creation_for_ppo_torbin_A": {
"log": "",
"state": "passed"
},
"core:RamachandranTest:test_random_phipsi_from_rama": {
"log": "",
"state": "passed"
},
"core:RamachandranTest:test_random_phipsi_from_rama_by_torsion_bin": {
"log": "",
"state": "passed"
},
"core:RamachandranTest:test_uniform_phipsi_from_allowed_rama": {
"log": "",
"state": "passed"
},
"core:RandomResidueSelectorTests:test_RandomResidueSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:RecordDefIOTests:test_read_record_definitions_from_file": {
"log": "",
"state": "passed"
},
"core:ReferencePoseTests:test_ReferencePoseSet_deleting": {
"log": "",
"state": "passed"
},
"core:ReferencePoseTests:test_ReferencePoseSet_setup": {
"log": "",
"state": "passed"
},
"core:ReferencePoseTests:test_ReferencePose_string_parsing": {
"log": "",
"state": "passed"
},
"core:ResFilterFactoryTests:test_all_res_filters_define_valid_xsds": {
"log": "",
"state": "passed"
},
"core:ResFilterFactoryTests:test_res_filter_factory_w_bad_xsd": {
"log": "",
"state": "passed"
},
"core:ResFilterFactoryTests:test_res_filter_factory_xsd_creation": {
"log": "",
"state": "passed"
},
"core:ResLvlTaskOperationFactoryTests:test_all_res_lvl_task_ops_define_valid_xsds": {
"log": "",
"state": "passed"
},
"core:ResLvlTaskOperationFactoryTests:test_res_lvl_task_op_factory_w_bad_xsd": {
"log": "",
"state": "passed"
},
"core:ResLvlTaskOperationFactoryTests:test_res_lvl_task_op_factory_xsd_creation": {
"log": "",
"state": "passed"
},
"core:ResfileReaderTests:test_resfile_EX_commands": {
"log": "",
"state": "passed"
},
"core:ResfileReaderTests:test_resfile_primary_modes": {
"log": "",
"state": "passed"
},
"core:ResfileReaderTests:test_resid_parsing": {
"log": "",
"state": "passed"
},
"core:Resfile_Silent:test_silent_resfile_io": {
"log": "",
"state": "passed"
},
"core:ResidueGraphTypesTests:test_acceptor_atom_filter": {
"log": "",
"state": "passed"
},
"core:ResidueGraphTypesTests:test_apolar_hydrogen_atom_filter": {
"log": "",
"state": "passed"
},
"core:ResidueGraphTypesTests:test_aromatic_hydrogen_filter": {
"log": "",
"state": "passed"
},
"core:ResidueGraphTypesTests:test_heavy_atom_filter": {
"log": "",
"state": "passed"
},
"core:ResidueGraphTypesTests:test_heavy_atom_with_hydrogens_filter": {
"log": "",
"state": "passed"
},
"core:ResidueGraphTypesTests:test_heavy_atom_with_polar_hydrogen_filter": {
"log": "",
"state": "passed"
},
"core:ResidueGraphTypesTests:test_hydrogen_atom_filter": {
"log": "",
"state": "passed"
},
"core:ResidueGraphTypesTests:test_polar_hydrogen_atom_filter": {
"log": "",
"state": "passed"
},
"core:ResidueInSequenceMotifSelectorTest:test_residue_selectors": {
"log": "",
"state": "passed"
},
"core:ResidueIndexSelectorTests:test_NeighbohoodResidueSelector_fail_no_resnums": {
"log": "",
"state": "passed"
},
"core:ResidueIndexSelectorTests:test_ResidueIndexSelector_fail_index_out_of_range": {
"log": "",
"state": "passed"
},
"core:ResidueIndexSelectorTests:test_ResidueIndexSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:ResidueIndexSelectorTests:test_ResidueIndexSelector_parse_my_tag_mixed_str": {
"log": "",
"state": "passed"
},
"core:ResidueIndexSelectorTests:test_ResidueIndexSelector_pdb_numbered_ranges": {
"log": "",
"state": "passed"
},
"core:ResidueNameSelectorTests:test_NeighbohoodResidueSelector_fail_no_resnums": {
"log": "",
"state": "passed"
},
"core:ResidueNameSelectorTests:test_ResidueNameSelector_fail_bad_name": {
"log": "",
"state": "passed"
},
"core:ResidueNameSelectorTests:test_ResidueNameSelector_fail_bad_variant": {
"log": "",
"state": "passed"
},
"core:ResidueNameSelectorTests:test_ResidueNameSelector_name3": {
"log": "",
"state": "passed"
},
"core:ResidueNameSelectorTests:test_ResidueNameSelector_name_and_name3": {
"log": "",
"state": "passed"
},
"core:ResidueNameSelectorTests:test_ResidueNameSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:ResiduePDBInfoHasLabelSelectorTests:test_NeighbohoodResidueSelector_fail_no_label": {
"log": "",
"state": "passed"
},
"core:ResiduePDBInfoHasLabelSelectorTests:test_ResiduePDBInfoHasLabelSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:ResiduePropertiesTests:test_properties": {
"log": "",
"state": "passed"
},
"core:ResiduePropertiesTests:test_property_enums": {
"log": "",
"state": "passed"
},
"core:ResiduePropertiesTests:test_variant_types": {
"log": "",
"state": "passed"
},
"core:ResiduePropertySelectorTests:test_selector": {
"log": "",
"state": "passed"
},
"core:ResiduePropertySelectorTests:test_xml_interface": {
"log": "",
"state": "passed"
},
"core:ResidueRangesTests:test_ResidueRanges_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:ResidueSelectorFactoryTests:test_ResidueSelectorFactory_all_ResidueSelector_all_attributes_have_descriptions": {
"log": "",
"state": "passed"
},
"core:ResidueSelectorFactoryTests:test_ResidueSelectorFactory_all_ResidueSelector_complexTypes_have_descriptions": {
"log": "",
"state": "passed"
},
"core:ResidueSelectorFactoryTests:test_all_residue_selectors_define_valid_xsds": {
"log": "",
"state": "passed"
},
"core:ResidueSelectorFactoryTests:test_output_residue_selector_xsds": {
"log": "",
"state": "passed"
},
"core:ResidueSelectorFactoryTests:test_register_one_creator_twice_with_ResidueSelectorFactory": {
"log": "",
"state": "passed"
},
"core:ResidueSelectorFactoryTests:test_register_one_creator_with_ResidueSelectorFactory": {
"log": "",
"state": "passed"
},
"core:ResidueSelectorFactoryTests:test_throw_on_unregistered_selector_name_ResidueSelectorFactory": {
"log": "",
"state": "passed"
},
"core:ResidueTest:test_Residue_resolve_partial_atom_id_dslf": {
"log": "",
"state": "passed"
},
"core:ResidueTest:test_Residue_resolve_partial_atom_id_peptide": {
"log": "",
"state": "passed"
},
"core:ResidueTest:test_fill_missing_atoms": {
"log": "",
"state": "passed"
},
"core:ResidueTest:test_fill_missing_atoms_polymer": {
"log": "",
"state": "passed"
},
"core:ResidueTest:test_insert_partial_atom_ids_for_mainchain_torsion": {
"log": "",
"state": "passed"
},
"core:ResidueTest:test_isDNA": {
"log": "",
"state": "passed"
},
"core:ResidueTest:test_isLigand": {
"log": "",
"state": "passed"
},
"core:ResidueTest:test_recursive_identification_of_connection_dependencies": {
"log": "",
"state": "passed"
},
"core:ResidueTest:test_recursive_identification_of_connection_dependencies_peptoid": {
"log": "",
"state": "passed"
},
"core:ResidueTest:test_residue_serialization": {
"log": "",
"state": "passed"
},
"core:ResidueTypeBloatTests:test_number_of_residue_types": {
"log": "",
"state": "passed"
},
"core:ResidueTypeConstraintTests:test_serialize_ResidueTypeConstraint": {
"log": "",
"state": "passed"
},
"core:ResidueTypeFinderTests:test_base_overlapping_name3": {
"log": "",
"state": "passed"
},
"core:ResidueTypeFinderTests:test_base_overlapping_name3_no_CCD": {
"log": "",
"state": "passed"
},
"core:ResidueTypeFinderTests:test_get_best_atom_names": {
"log": "",
"state": "passed"
},
"core:ResidueTypeFinderTests:test_get_best_atom_names_no_CCD": {
"log": "",
"state": "passed"
},
"core:ResidueTypeFinderTests:test_get_by_aa": {
"log": "",
"state": "passed"
},
"core:ResidueTypeFinderTests:test_get_by_all_possible": {
"log": "",
"state": "passed"
},
"core:ResidueTypeFinderTests:test_get_by_all_possible_no_CCD": {
"log": "",
"state": "passed"
},
"core:ResidueTypeFinderTests:test_get_by_odd_name3": {
"log": "",
"state": "passed"
},
"core:ResidueTypeFinderTests:test_get_by_std_name3": {
"log": "",
"state": "passed"
},
"core:ResidueTypeLinkingConstraintTests:test_constraints": {
"log": "",
"state": "passed"
},
"core:ResidueTypeLinkingConstraintTests:test_linked_identity_constraints": {
"log": "",
"state": "passed"
},
"core:ResidueTypeLinkingConstraintTests:test_map_constraints": {
"log": "",
"state": "passed"
},
"core:ResidueTypeLinkingConstraintTests:test_residue_type_linking_constraints_mod_bonus_map": {
"log": "",
"state": "passed"
},
"core:ResidueTypeLinkingConstraintTests:test_residue_type_linking_constraints_setters": {
"log": "",
"state": "passed"
},
"core:ResidueTypeLinkingConstraintTests:test_serialize_ResidueTypeLinkingConstraint": {
"log": "",
"state": "passed"
},
"core:ResidueTypeSetCacheConcurrencyTests:test_cys_to_scy_query_after_read_lock_released_two_threads": {
"log": "",
"state": "passed"
},
"core:ResidueTypeSetCacheConcurrencyTests:test_five_treads_read_from_RTS_restypefinder": {
"log": "",
"state": "passed"
},
"core:ResidueTypeSetCacheConcurrencyTests:test_load_new_restype_after_read_lock_released_five_threads_restypefinder": {
"log": "",
"state": "passed"
},
"core:ResidueTypeSetCacheConcurrencyTests:test_load_new_restype_after_read_lock_released_two_threads_name_mapOP": {
"log": "",
"state": "passed"
},
"core:ResidueTypeSetCacheConcurrencyTests:test_load_new_restype_after_read_lock_released_two_threads_restypefinder": {
"log": "",
"state": "passed"
},
"core:ResidueTypeSetCacheConcurrencyTests:test_load_new_restype_after_write_lock_released_two_threads_name_mapOP": {
"log": "",
"state": "passed"
},
"core:ResidueTypeSetCacheConcurrencyTests:test_load_new_restype_after_write_lock_released_two_threads_restypefinder": {
"log": "",
"state": "passed"
},
"core:ResidueTypeSetCacheConcurrencyTests:test_load_new_restype_single_thread": {
"log": "",
"state": "passed"
},
"core:ResidueTypeSetCacheConcurrencyTests:test_restype_finder_loading_new_restypes_in_single_thread": {
"log": "",
"state": "passed"
},
"core:ResidueTypeSetCacheConcurrencyTests:test_ser_to_sep_query_after_read_lock_released_two_threads": {
"log": "",
"state": "passed"
},
"core:ResidueTypeSetCacheConcurrencyTests:test_two_treads_read_from_RTS_gen_patch_cys_to_scy": {
"log": "",
"state": "passed"
},
"core:ResidueTypeSetCacheConcurrencyTests:test_two_treads_read_from_RTS_gen_patch_ser_to_sep": {
"log": "",
"state": "passed"
},
"core:ResidueTypeSetCacheConcurrencyTests:test_two_treads_read_from_RTS_name_mapOP": {
"log": "",
"state": "passed"
},
"core:ResidueTypeSetCacheConcurrencyTests:test_two_treads_read_from_RTS_restypefinder": {
"log": "",
"state": "passed"
},
"core:ResidueTypeSetTests:test_get_mirror_type": {
"log": "",
"state": "passed"
},
"core:ResidueTypeSetTests:test_residue_type_sets": {
"log": "",
"state": "passed"
},
"core:ResidueTypeTests:test_atom_add": {
"log": "",
"state": "passed"
},
"core:ResidueTypeTests:test_chi_assignment": {
"log": "",
"state": "passed"
},
"core:ResidueTypeTests:test_icoor_reassignment": {
"log": "",
"state": "passed"
},
"core:ResidueTypeTests:test_odd_proline_ring_detection": {
"log": "",
"state": "passed"
},
"core:ResidueTypeTests:test_residue_type_initialization": {
"log": "",
"state": "passed"
},
"core:ResidueTypeTests:test_round_trip": {
"log": "",
"state": "passed"
},
"core:ResidueTypeTests:test_round_trip_cen": {
"log": "",
"state": "passed"
},
"core:ResidueTypeTests:test_variant_matching": {
"log": "",
"state": "passed"
},
"core:ResidueTypeTests:test_vd_has": {
"log": "",
"state": "passed"
},
"core:RestypeToRDMolTests:test_charge_states": {
"log": "",
"state": "passed"
},
"core:RestypeToRDMolTests:test_charged_reprotonation": {
"log": "",
"state": "passed"
},
"core:RestypeToRDMolTests:test_convert": {
"log": "",
"state": "passed"
},
"core:RingClosureEnergyTests:test_eval_energy_cisACHC": {
"log": "",
"state": "passed"
},
"core:RingClosureEnergyTests:test_eval_energy_cisACPC": {
"log": "",
"state": "passed"
},
"core:RingClosureEnergyTests:test_eval_energy_proline": {
"log": "",
"state": "passed"
},
"core:RingClosureEnergyTests:test_ringclose_deriv_check_w_total_flexibility": {
"log": "",
"state": "passed"
},
"core:RingConformerIOTests:test_conformers_from_database_file_for_ring_size": {
"log": "",
"state": "passed"
},
"core:RingConformerSetTests:test_get_all_nondegenerate_conformers": {
"log": "",
"state": "passed"
},
"core:RingConformerSetTests:test_get_conformer_methods": {
"log": "",
"state": "passed"
},
"core:RingConformerSetTests:test_get_ideal_conformer_by_descriptor_methods": {
"log": "",
"state": "passed"
},
"core:RingUtilityFunctionTests:test_is_atom_axial_or_equatorial": {
"log": "",
"state": "passed"
},
"core:RingUtilityFunctionTests:test_is_atom_axial_or_equatorial_to_ring": {
"log": "",
"state": "passed"
},
"core:RmsUtilTest:test_DLbundle_rmsd_aligned_unaligned": {
"log": "",
"state": "passed"
},
"core:RmsUtilTest:test_ca_rmsd_with_mapping": {
"log": "",
"state": "passed"
},
"core:RmsUtilTest:test_gdtsc": {
"log": "",
"state": "passed"
},
"core:RmsUtilTest:test_gdtsc_self": {
"log": "",
"state": "passed"
},
"core:RmsUtilTest:test_ligand_rms": {
"log": "",
"state": "passed"
},
"core:RmsUtilTest:test_mainchain_hevayatom_rmsd": {
"log": "",
"state": "passed"
},
"core:RmsUtilTest:test_superimpose_same": {
"log": "",
"state": "passed"
},
"core:RmsUtilTest:test_superimpose_self": {
"log": "",
"state": "passed"
},
"core:RotamerBuildingFunctionsTests:test_build_rotamers_from_rotamer_bins": {
"log": "",
"state": "passed"
},
"core:RotamerConstraintDun2002Tests:test_rescore_and_copy": {
"log": "",
"state": "passed"
},
"core:RotamerConstraintDun2002Tests:test_unbound_rot": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_dotsphere_construction": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_dotsphere_get_num_covered": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_dotsphere_get_total_dots": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_dotsphere_increment_count": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_dotsphere_operators": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_dotsphere_write_to_compact_array": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_invrotamerdots": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_invrotamerdots_overlap_is_buried": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_invrotamerdots_overlap_is_buried_1FKB": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_rotamerdots_construction": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_rotamerdots_increment_and_decrement_from_cached": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_rotamerdots_increment_and_decrement_from_cached_excl_hydrogens": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_rotamerdots_increment_and_decrement_from_cached_expanded_polars": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_rotamerdots_increment_both_and_cache": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_rotamerdots_increment_both_and_cache_excl_hydrogens": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_rotamerdots_increment_both_and_cache_expanded_polars": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_rotamerdots_increment_self_overlap": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_rotamerdots_increment_this_and_cache": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_rotamerdots_increment_this_and_cache_expanded_polars": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_rotamerdots_overlaps": {
"log": "",
"state": "passed"
},
"core:RotamerDotsTests:test_rotamerdotscache_construction": {
"log": "",
"state": "passed"
},
"core:RotamerSetsTests:test_rotamer_set_add_rotamer_into_existing_group1": {
"log": "",
"state": "passed"
},
"core:RotamerSetsTests:test_rotamer_set_add_rotamer_into_existing_group2": {
"log": "",
"state": "passed"
},
"core:RotamerSetsTests:test_rotamer_set_add_rotamer_into_existing_group3": {
"log": "",
"state": "passed"
},
"core:RotamerSetsTests:test_rotamer_set_add_rotamer_into_existing_group4": {
"log": "",
"state": "passed"
},
"core:RotamerSetsTests:test_rotamer_set_residue_type_offsets": {
"log": "",
"state": "passed"
},
"core:RotamerSetsTests:test_rotamer_sets": {
"log": "",
"state": "passed"
},
"core:RotamerSubsetsTest:test_rotamer_subset_constructor": {
"log": "",
"state": "passed"
},
"core:RotamerTrials:test_rotamer_trials": {
"log": "",
"state": "passed"
},
"core:RotamerUtils:test_residue_rotamer_recovery": {
"log": "",
"state": "passed"
},
"core:RotamerUtils:test_rotamer_recovery": {
"log": "",
"state": "passed"
},
"core:SCMinMinimizerMapTests:test_construct_SCMinMinimizerMap": {
"log": "",
"state": "passed"
},
"core:SCMinMultifuncTests:test_construct_SCMinMultifunc": {
"log": "",
"state": "passed"
},
"core:SOGFuncTests:test_func": {
"log": "",
"state": "passed"
},
"core:SOGFuncTests:test_serialize_SOGFunc": {
"log": "",
"state": "passed"
},
"core:SapConstraintEnergyTests:test_fast_partial_packing": {
"log": "",
"state": "passed"
},
"core:SapConstraintEnergyTests:test_helper_lightning": {
"log": "",
"state": "passed"
},
"core:SapConstraintEnergyTests:test_lightning_packing_partial": {
"log": "",
"state": "passed"
},
"core:SapConstraintEnergyTests:test_math_mover": {
"log": "",
"state": "passed"
},
"core:SapConstraintEnergyTests:test_mover": {
"log": "",
"state": "passed"
},
"core:SapConstraintEnergyTests:test_partial_packing": {
"log": "",
"state": "passed"
},
"core:SapConstraintEnergyTests:test_selectors": {
"log": "",
"state": "passed"
},
"core:SasaTests:test_calc_per_res_hydrophobic_sasa": {
"log": "",
"state": "passed"
},
"core:SasaTests:test_calc_total_sasa_glycine": {
"log": "",
"state": "passed"
},
"core:SasaTests:test_calc_total_sasa_smallprotein": {
"log": "",
"state": "passed"
},
"core:SasaTests:test_get_overlap": {
"log": "",
"state": "passed"
},
"core:ScTests:test_sc": {
"log": "",
"state": "passed"
},
"core:ScalarWeightedFuncTests:test_ScalarWeightedFunc": {
"log": "",
"state": "passed"
},
"core:ScalarWeightedFuncTests:test_serialize_ScalarWeightedFunc": {
"log": "",
"state": "passed"
},
"core:ScoreFunctionFactoryTest:test_beta_15_behavior": {
"log": "",
"state": "passed"
},
"core:ScoreFunctionFactoryTest:test_beta_15_behavior_noext": {
"log": "",
"state": "passed"
},
"core:ScoreFunctionFactoryTest:test_beta_15_returns": {
"log": "",
"state": "passed"
},
"core:ScoreFunctionFactoryTest:test_get_score_function_name": {
"log": "",
"state": "passed"
},
"core:ScoreFunctionFactoryTest:test_list_read_options_in_get_score_function_in_sync_w_get_score_function": {
"log": "",
"state": "passed"
},
"core:ScoreFunctionTest:test_ScoreFunction_ctor_actually_reads_option_collection": {
"log": "",
"state": "passed"
},
"core:ScoreFunctionTest:test_ScoreFunction_list_options_read_in_sync": {
"log": "",
"state": "passed"
},
"core:ScoreFunctionTest:test_add_weights_from_file": {
"log": "",
"state": "passed"
},
"core:ScoreFunctionTest:test_apply_patch_from_file": {
"log": "",
"state": "passed"
},
"core:ScoreFunctionTest:test_get_sub_score_exclude_res": {
"log": "",
"state": "passed"
},
"core:ScoreFunctionTest:test_get_sub_score_exclude_res_long_range_terms": {
"log": "",
"state": "passed"
},
"core:ScoreFunctionUtilityTest:test_find_weights_file": {
"log": "",
"state": "passed"
},
"core:ScoreTest:test_ScoreTest": {
"log": "",
"state": "passed"
},
"core:ScoringSchemeTests:test_pair_scoring_scheme": {
"log": "",
"state": "passed"
},
"core:ScoringSchemeTests:test_simple_scoring_scheme": {
"log": "",
"state": "passed"
},
"core:ScoringUtilTests:test_atomistic_energies": {
"log": "",
"state": "passed"
},
"core:SecondaryStructureSelectorTests:test_SecondaryStructureSelector_fail_bad_ss": {
"log": "",
"state": "passed"
},
"core:SecondaryStructureSelectorTests:test_SecondaryStructureSelector_fail_no_ss": {
"log": "",
"state": "passed"
},
"core:SecondaryStructureSelectorTests:test_SecondaryStructureSelector_fail_no_ss_C": {
"log": "",
"state": "passed"
},
"core:SecondaryStructureSelectorTests:test_SecondaryStructureSelector_overlap": {
"log": "",
"state": "passed"
},
"core:SecondaryStructureSelectorTests:test_SecondaryStructureSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"core:SelectedResidueCountMetricTests:test_with_selector": {
"log": "",
"state": "passed"
},
"core:SelectedResidueCountMetricTests:test_without_selector": {
"log": "",
"state": "passed"
},
"core:SelectorLogicParserTests:test_SelectorParser_and_combination": {
"log": "",
"state": "passed"
},
"core:SelectorLogicParserTests:test_SelectorParser_error_handling_with_illegal_varnames": {
"log": "",
"state": "passed"
},
"core:SelectorLogicParserTests:test_SelectorParser_missing_residue_selector": {
"log": "",
"state": "passed"
},
"core:SelectorLogicParserTests:test_SelectorParser_not_and_combination": {
"log": "",
"state": "passed"
},
"core:SelectorLogicParserTests:test_SelectorParser_not_or_combination": {
"log": "",
"state": "passed"
},
"core:SelectorLogicParserTests:test_SelectorParser_not_or_combination2": {
"log": "",
"state": "passed"
},
"core:SelectorLogicParserTests:test_SelectorParser_or_combination": {
"log": "",
"state": "passed"
},
"core:SelectorLogicParserTests:test_combine_logic_within_all_selections": {
"log": "",
"state": "passed"
},
"core:SequenceAlignmentTests:test_alignment_functions": {
"log": "",
"state": "passed"
},
"core:SequenceAlignmentTests:test_alignment_io": {
"log": "",
"state": "passed"
},
"core:SequenceAlignmentTests:test_alignment_mapping": {
"log": "",
"state": "passed"
},
"core:SequenceAlignmentTests:test_equality_operator": {
"log": "",
"state": "passed"
},
"core:SequenceAlignmentTests:test_general_aln_io": {
"log": "",
"state": "passed"
},
"core:SequenceAlignmentTests:test_grishin_align_io": {
"log": "",
"state": "passed"
},
"core:SequenceAlignmentTests:test_mapping_to_alignment": {
"log": "",
"state": "passed"
},
"core:SequenceAlignmentTests:test_per_residue_scores": {
"log": "",
"state": "passed"
},
"core:SequenceAlignmentTests:test_simple_aligner": {
"log": "",
"state": "passed"
},
"core:SequenceMappingTests:test_constructor": {
"log": "",
"state": "passed"
},
"core:SequenceMappingTests:test_lengthevent_append": {
"log": "",
"state": "passed"
},
"core:SequenceMappingTests:test_lengthevent_append_end": {
"log": "",
"state": "passed"
},
"core:SequenceMappingTests:test_lengthevent_delete": {
"log": "",
"state": "passed"
},
"core:SequenceMappingTests:test_lengthevent_delete_end": {
"log": "",
"state": "passed"
},
"core:SequenceMappingTests:test_lengthevent_prepend": {
"log": "",
"state": "passed"
},
"core:SequenceMappingTests:test_lengthevent_prepend_end": {
"log": "",
"state": "passed"
},
"core:SequenceMappingTests:test_reverse": {
"log": "",
"state": "passed"
},
"core:SequenceMappingTests:test_transitive_mapping": {
"log": "",
"state": "passed"
},
"core:SequenceMetricTests:test_base_name": {
"log": "",
"state": "passed"
},
"core:SequenceMetricTests:test_full_name": {
"log": "",
"state": "passed"
},
"core:SequenceMetricTests:test_oneletter_code": {
"log": "",
"state": "passed"
},
"core:SequenceMetricTests:test_threeletter_code": {
"log": "",
"state": "passed"
},
"core:SequenceMotifUtilTests:test_split_sequence_motif": {
"log": "",
"state": "passed"
},
"core:SequenceProfileConstraintTests:test_serialize_SequenceProfileConstraint": {
"log": "",
"state": "passed"
},
"core:SequenceProfile_Tests:test_generate_from_sequence": {
"log": "",
"state": "passed"
},
"core:SequenceProfile_Tests:test_global_auto_rescale": {
"log": "",
"state": "passed"
},
"core:SequenceProfile_Tests:test_input": {
"log": "",
"state": "passed"
},
"core:SequenceProfile_Tests:test_prob_temp": {
"log": "",
"state": "passed"
},
"core:SequenceProfile_Tests:test_probs": {
"log": "",
"state": "passed"
},
"core:SequenceProfile_Tests:test_rescale": {
"log": "",
"state": "passed"
},
"core:SequenceProfile_Tests:test_sequence_entropy": {
"log": "",
"state": "passed"
},
"core:SequenceProfile_Tests:test_sequence_manipulation": {
"log": "",
"state": "passed"
},
"core:SequenceSimilarityMetricTests:test_selector": {
"log": "",
"state": "passed"
},
"core:SequenceSimilarityMetricTests:test_simple_case": {
"log": "",
"state": "passed"
},
"core:SequenceSymmetricAnnealerTests:test_chain_similarity_after_packing": {
"log": "",
"state": "passed"
},
"core:SequenceSymmetricAnnealerTests:test_chain_similarity_after_packing_ncaa": {
"log": "",
"state": "passed"
},
"core:SequenceSymmetricAnnealerTests:test_chain_similarity_with_virtual_root": {
"log": "",
"state": "passed"
},
"core:SequenceSymmetricAnnealerTests:test_chain_similiarity_with_alternative_logic": {
"log": "",
"state": "passed"
},
"core:SequenceSymmetricAnnealerTests:test_different_accepted_restypes_for_linked_residues": {
"log": "",
"state": "passed"
},
"core:SequenceSymmetricAnnealerTests:test_fail_in_packing_from_no_common_res_types": {
"log": "",
"state": "passed"
},
"core:SequenceSymmetricAnnealerTests:test_fail_in_packing_from_no_common_res_types_L_and_D": {
"log": "",
"state": "passed"
},
"core:SequenceSymmetricAnnealerTests:test_index_residue_selectors": {
"log": "",
"state": "passed"
},
"core:SequenceSymmetricAnnealerTests:test_initialise_annealer_from_xml": {
"log": "",
"state": "passed"
},
"core:SequenceSymmetricAnnealerTests:test_overlapping_index_residue_selectors": {
"log": "",
"state": "passed"
},
"core:SequenceSymmetricAnnealerTests:test_recover_symmetry": {
"log": "",
"state": "passed"
},
"core:SequenceSymmetricAnnealerTests:test_xml_validation": {
"log": "",
"state": "passed"
},
"core:SequenceUtilTests:test_annotated_sequence": {
"log": "",
"state": "passed"
},
"core:SequenceUtilTests:test_mapping_into_sequence": {
"log": "",
"state": "passed"
},
"core:SequenceUtilTests:test_naive_alignment": {
"log": "",
"state": "passed"
},
"core:SequenceUtilTests:test_strip_spacers": {
"log": "",
"state": "passed"
},
"core:SigmoidFuncTests:test_serialize_SigmoidFunc": {
"log": "",
"state": "passed"
},
"core:SimpleInteractionGraphTests:test_instantiate_simple_ig": {
"log": "",
"state": "passed"
},
"core:SimpleInteractionGraphTests:test_simple_ig_neutral_compare": {
"log": "",
"state": "passed"
},
"core:SimpleMetricSelectorTests:test_selector": {
"log": "",
"state": "passed"
},
"core:SimpleMetricSelectorTests:test_xml": {
"log": "",
"state": "passed"
},
"core:SimpleMetricTests:test_composite_real_metric": {
"log": "",
"state": "passed"
},
"core:SimpleMetricTests:test_composite_string_metric": {
"log": "",
"state": "passed"
},
"core:SimpleMetricTests:test_glycan_layer_metric": {
"log": "",
"state": "passed"
},
"core:SimpleMetricTests:test_interaction_energy_metric": {
"log": "",
"state": "passed"
},
"core:SimpleMetricTests:test_per_residue_clash_metric": {
"log": "",
"state": "passed"
},
"core:SimpleMetricTests:test_per_residue_real_metric": {
"log": "",
"state": "passed"
},
"core:SimpleMetricTests:test_per_residue_string_metric": {
"log": "",
"state": "passed"
},
"core:SimpleMetricTests:test_real_metric": {
"log": "",
"state": "passed"
},
"core:SimpleMetricTests:test_residue_summary_metric": {
"log": "",
"state": "passed"
},
"core:SimpleMetricTests:test_sasa_metric": {
"log": "",
"state": "passed"
},
"core:SimpleMetricTests:test_seq_metric": {
"log": "",
"state": "passed"
},
"core:SimpleMetricTests:test_ss_metric": {
"log": "",
"state": "passed"
},
"core:SimpleMetricTests:test_string_metric": {
"log": "",
"state": "passed"
},
"core:SimpleMetricTests:test_utility_metrics": {
"log": "",
"state": "passed"
},
"core:SingleLigandRotamerLibraryTests:test_init_from_file_explicit_and_implicit": {
"log": "",
"state": "passed"
},
"core:SingleLigandRotamerLibraryTests:test_init_from_stream": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests:test_B3C_rotamer_well_scoring": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests:test_B3N_rotamer_well_scoring": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests:test_DAB_rotamer_well_scoring": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests:test_DPP_rotamer_well_scoring": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests:test_ORN_rotamer_well_scoring": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests:test_d_nme_trp_rotamer_well_scoring": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests:test_equivalence_independent_of_rotamer_order": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests:test_nme_trp_rotamer_well_scoring": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests:test_peptoid_001_off_rotamer_scoring": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests:test_peptoid_001_off_rotamer_scoring_2": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests:test_peptoid_001_rotamer_well_scoring": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests:test_peptoid_001_spikes_in_dunbrack_landscape": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests:test_peptoid_001_spikes_in_dunbrack_landscape_2": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests:test_peptoid_601_rotamer_well_scoring": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests:test_peptoid_602_rotamer_well_scoring": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests_Dun02:test_equivalent_derivatives_to_canonical": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests_Dun02:test_equivalent_rotlib_values_to_canonical": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests_Dun02:test_equivalent_scoring_to_canonical": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests_Dun02_no_voronoi:test_equivalent_derivatives_to_canonical": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests_Dun02_no_voronoi:test_equivalent_rotlib_values_to_canonical": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests_Dun02_no_voronoi:test_equivalent_scoring_to_canonical": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests_equivalency_no_voronoi:test_equivalent_derivatives_to_canonical": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests_equivalency_no_voronoi:test_equivalent_rotlib_values_to_canonical": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests_equivalency_no_voronoi:test_equivalent_scoring_to_canonical": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests_equivalency_voronoi:test_equivalent_derivatives_to_canonical": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests_equivalency_voronoi:test_equivalent_rotlib_values_to_canonical": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests_equivalency_voronoi:test_equivalent_scoring_to_canonical": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests_oligourea:test_OU3_PRO_rotamer_well_scoring": {
"log": "",
"state": "passed"
},
"core:SingleNCAARotamerLibraryTests_oligourea:test_OU3_VAL_rotamer_well_scoring": {
"log": "",
"state": "passed"
},
"core:SingleResidueRotamerLibraryTests:test_expand_proton_chis": {
"log": "",
"state": "passed"
},
"core:SingleResidueRotamerLibraryTests:test_extra_chi_expansion": {
"log": "",
"state": "passed"
},
"core:SiteConstraintTests:test_serialize_SiteConstraint": {
"log": "",
"state": "passed"
},
"core:SiteConstraintTests:test_site_constraint_far_from_interface": {
"log": "",
"state": "passed"
},
"core:SiteConstraintTests:test_site_constraint_near_interface": {
"log": "",
"state": "passed"
},
"core:SkipViolFuncTests:test_serialize_SkipViolFunc": {
"log": "",
"state": "passed"
},
"core:SliceResidueSelectorTests:test_SliceResidueSelector_constructors": {
"log": "",
"state": "passed"
},
"core:SoedingFuncTests:test_serialize_SoedingFunc": {
"log": "",
"state": "passed"
},
"core:SpanTest:test_is_valid": {
"log": "",
"state": "passed"
},
"core:SpanningTopologyTest:test_concatenate_topology": {
"log": "",
"state": "passed"
},
"core:SpanningTopologyTest:test_from_pdb1": {
"log": "",
"state": "passed"
},
"core:SpanningTopologyTest:test_from_pdb2": {
"log": "",
"state": "passed"
},
"core:SpanningTopologyTest:test_from_pdb3": {
"log": "",
"state": "passed"
},
"core:SpanningTopologyTest:test_from_pdb4": {
"log": "",
"state": "passed"
},
"core:SpanningTopologyTest:test_from_spanfile": {
"log": "",
"state": "passed"
},
"core:SpanningTopologyTest:test_is_valid": {
"log": "",
"state": "passed"
},
"core:SpanningTopologyTest:test_res_in_membrane": {
"log": "",
"state": "passed"
},
"core:SpanningTopologyTest:test_spanning_membrane": {
"log": "",
"state": "passed"
},
"core:SplineFuncTests:test_serialize_SplineFunc": {
"log": "",
"state": "passed"
},
"core:SplineFuncTests:test_spline_func": {
"log": "",
"state": "passed"
},
"core:SplitUnfoldedReferenceEnergyTests:test_residue_energy_default_file_weights": {
"log": "",
"state": "passed"
},
"core:SplitUnfoldedReferenceEnergyTests:test_residue_energy_emap_weights": {
"log": "",
"state": "passed"
},
"core:SplitUnfoldedReferenceEnergyTests:test_residue_energy_no_weights": {
"log": "",
"state": "passed"
},
"core:SplitUnfoldedTwoBodyPotentialTests:test_get_restype_emap": {
"log": "",
"state": "passed"
},
"core:SquareWell2FuncTests:test_serialize_SquareWell2Func": {
"log": "",
"state": "passed"
},
"core:SquareWellFuncTests:test_serialize_SquareWellFunc": {
"log": "",
"state": "passed"
},
"core:StoredRotamerLibrarySpecificationTests:test_add_conformers": {
"log": "",
"state": "passed"
},
"core:StoredRotamerLibrarySpecificationTests:test_add_rotamer": {
"log": "",
"state": "passed"
},
"core:StructFileReaderOptionsTests:test_options_actually_reads_option_collection": {
"log": "",
"state": "passed"
},
"core:StructFileReaderOptionsTests:test_options_and_options_list_in_sync": {
"log": "",
"state": "passed"
},
"core:StructFileRepOptionsTests:test_options_actually_reads_option_collection": {
"log": "",
"state": "passed"
},
"core:StructFileRepOptionsTests:test_options_and_options_list_in_sync": {
"log": "",
"state": "passed"
},
"core:StructFileRepTests:test_extra_res_fa_flag": {
"log": "",
"state": "passed"
},
"core:StructFileRepTests:test_generate_secondary_structure_informations": {
"log": "",
"state": "passed"
},
"core:StructFileRepTests:test_generate_secondary_structure_informations_twochains": {
"log": "",
"state": "passed"
},
"core:StructFileRepTests:test_get_connectivity_annotation_info": {
"log": "",
"state": "passed"
},
"core:SugarBackboneEnergyTests:test_atoms_w_dof_derivatives": {
"log": "",
"state": "passed"
},
"core:SumFuncTests:test_serialize_SumFunc": {
"log": "",
"state": "passed"
},
"core:SurfaceInteractionGraphTests:test_bg_node_2_resid": {
"log": "",
"state": "passed"
},
"core:SurfaceInteractionGraphTests:test_blanket_reset_alt_state_counts": {
"log": "",
"state": "passed"
},
"core:SurfaceInteractionGraphTests:test_commit_substitution": {
"log": "",
"state": "passed"
},
"core:SurfaceInteractionGraphTests:test_consider_substitution": {
"log": "",
"state": "passed"
},
"core:SurfaceInteractionGraphTests:test_get_energy_current_state_assignment": {
"log": "",
"state": "passed"
},
"core:SurfacePotentialTests:test_average_residue_hASA": {
"log": "",
"state": "passed"
},
"core:SurfacePotentialTests:test_compute_pose_hpatch_energy": {
"log": "",
"state": "passed"
},
"core:SurfacePotentialTests:test_compute_pose_surface_energy_fragment": {
"log": "",
"state": "passed"
},
"core:SurfacePotentialTests:test_compute_pose_surface_energy_smallprotein": {
"log": "",
"state": "passed"
},
"core:SurfacePotentialTests:test_compute_pose_with_HETATM_hpatch_energy": {
"log": "",
"state": "passed"
},
"core:SurfacePotentialTests:test_compute_residue_surface_energy": {
"log": "",
"state": "passed"
},
"core:SurfacePotentialTests:test_hASA_patch_energy": {
"log": "",
"state": "passed"
},
"core:SurfacePotentialTests:test_hpatch_score": {
"log": "",
"state": "passed"
},
"core:SymmB3GBTests:test_symm_B3G_beta_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmB3GBTests:test_symm_B3G_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmB3GBTests:test_symm_B3G_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmB3GBTests:test_symm_B3G_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmB3GBTests:test_symm_B3G_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmB3GBTests:test_symm_B3G_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmB3GBTests:test_symm_B3G_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmB3GBTests:test_symm_B3G_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmB3GBTests:test_symm_B3G_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmB3GBTests:test_symm_B3G_omega": {
"log": "",
"state": "passed"
},
"core:SymmB3GBTests:test_symm_B3G_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmB3GBTests:test_symm_B3G_rama": {
"log": "",
"state": "passed"
},
"core:SymmB3GBTests:test_symm_B3G_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmB3GTests:test_symm_B3G_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmB3GTests:test_symm_B3G_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmB3GTests:test_symm_B3G_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmB3GTests:test_symm_B3G_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmB3GTests:test_symm_B3G_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmB3GTests:test_symm_B3G_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmB3GTests:test_symm_B3G_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmB3GTests:test_symm_B3G_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmB3GTests:test_symm_B3G_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmB3GTests:test_symm_B3G_omega": {
"log": "",
"state": "passed"
},
"core:SymmB3GTests:test_symm_B3G_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmB3GTests:test_symm_B3G_rama": {
"log": "",
"state": "passed"
},
"core:SymmB3GTests:test_symm_B3G_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests:test_symm_DLBetas_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests:test_symm_DLBetas_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests:test_symm_DLBetas_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests:test_symm_DLBetas_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests:test_symm_DLBetas_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests:test_symm_DLBetas_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests:test_symm_DLBetas_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests:test_symm_DLBetas_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests:test_symm_DLBetas_omega": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests:test_symm_DLBetas_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests:test_symm_DLBetas_rama": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests:test_symm_DLBetas_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests_beta:test_symm_DLBetas_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests_beta:test_symm_DLBetas_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests_beta:test_symm_DLBetas_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests_beta:test_symm_DLBetas_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests_beta:test_symm_DLBetas_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests_beta:test_symm_DLBetas_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests_beta:test_symm_DLBetas_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests_beta:test_symm_DLBetas_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests_beta:test_symm_DLBetas_omega": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests_beta:test_symm_DLBetas_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests_beta:test_symm_DLBetas_rama": {
"log": "",
"state": "passed"
},
"core:SymmDLBetasTests_beta:test_symm_DLBetas_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmDLMinTests:test_symm_DL_min_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmDLMinTests:test_symm_DL_min_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmDLMinTests:test_symm_DL_min_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:SymmDLMinTests:test_symm_DL_min_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmDLMinTests:test_symm_DL_min_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmDLMinTests:test_symm_DL_min_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmDLMinTests:test_symm_DL_min_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLMinTests:test_symm_DL_min_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLMinTests:test_symm_DL_min_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmDLMinTests:test_symm_DL_min_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmDLMinTests:test_symm_DL_min_omega": {
"log": "",
"state": "passed"
},
"core:SymmDLMinTests:test_symm_DL_min_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmDLMinTests:test_symm_DL_min_pro_close": {
"log": "",
"state": "passed"
},
"core:SymmDLMinTests:test_symm_DL_min_rama": {
"log": "",
"state": "passed"
},
"core:SymmDLMinTests:test_symm_DL_min_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmDLMinTests:test_symm_DL_min_rama_prepro2": {
"log": "",
"state": "passed"
},
"core:SymmDLMinTests:test_symm_DL_min_talaris2014": {
"log": "",
"state": "passed"
},
"core:SymmDLMinTests:test_symm_DL_min_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAATests:test_symm_DL_min_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAATests:test_symm_DL_min_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAATests:test_symm_DL_min_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAATests:test_symm_DL_min_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAATests:test_symm_DL_min_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAATests:test_symm_DL_min_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAATests:test_symm_DL_min_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAATests:test_symm_DL_min_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAATests:test_symm_DL_min_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAATests:test_symm_DL_min_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAATests:test_symm_DL_min_omega": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAATests:test_symm_DL_min_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAATests:test_symm_DL_min_pro_close": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAATests:test_symm_DL_min_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAATests:test_symm_DL_min_rama_prepro2": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAATests:test_symm_DL_min_ref2015": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAATests:test_symm_DL_min_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAA_betaTests:test_symm_DL_min_beta": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAA_betaTests:test_symm_DL_min_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAA_betaTests:test_symm_DL_min_current_beta_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAA_betaTests:test_symm_DL_min_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAA_betaTests:test_symm_DL_min_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAA_betaTests:test_symm_DL_min_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAA_betaTests:test_symm_DL_min_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAA_betaTests:test_symm_DL_min_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAA_betaTests:test_symm_DL_min_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAA_betaTests:test_symm_DL_min_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAA_betaTests:test_symm_DL_min_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAA_betaTests:test_symm_DL_min_omega": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAA_betaTests:test_symm_DL_min_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAA_betaTests:test_symm_DL_min_pro_close": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAA_betaTests:test_symm_DL_min_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAA_betaTests:test_symm_DL_min_rama_prepro2": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_NCAA_betaTests:test_symm_DL_min_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_beta_Tests:test_symm_DL_min_beta": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_beta_Tests:test_symm_DL_min_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_beta_Tests:test_symm_DL_min_current_beta_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_beta_Tests:test_symm_DL_min_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_beta_Tests:test_symm_DL_min_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_beta_Tests:test_symm_DL_min_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_beta_Tests:test_symm_DL_min_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_beta_Tests:test_symm_DL_min_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_beta_Tests:test_symm_DL_min_fa_intra_sol_xover4": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_beta_Tests:test_symm_DL_min_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_beta_Tests:test_symm_DL_min_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_beta_Tests:test_symm_DL_min_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_beta_Tests:test_symm_DL_min_lk_ball_wtd": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_beta_Tests:test_symm_DL_min_omega": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_beta_Tests:test_symm_DL_min_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_beta_Tests:test_symm_DL_min_pro_close": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_beta_Tests:test_symm_DL_min_rama": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_beta_Tests:test_symm_DL_min_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_beta_Tests:test_symm_DL_min_rama_prepro2": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_beta_Tests:test_symm_DL_min_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_Tests:test_symm_DL_min_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_Tests:test_symm_DL_min_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_Tests:test_symm_DL_min_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_Tests:test_symm_DL_min_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_Tests:test_symm_DL_min_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_Tests:test_symm_DL_min_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_Tests:test_symm_DL_min_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_Tests:test_symm_DL_min_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_Tests:test_symm_DL_min_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_Tests:test_symm_DL_min_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_Tests:test_symm_DL_min_omega": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_Tests:test_symm_DL_min_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_Tests:test_symm_DL_min_pro_close": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_Tests:test_symm_DL_min_rama": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_Tests:test_symm_DL_min_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_Tests:test_symm_DL_min_rama_prepro2": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_Tests:test_symm_DL_min_talaris2014": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_Tests:test_symm_DL_min_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_beta_sfxn": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_intra_sol_xover4": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_lk_ball_wtd": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_omega": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_pro_close": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_rama": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_rama_prepro2": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_Tests:test_symm_DL_min_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_Tests:test_symm_DL_min_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_Tests:test_symm_DL_min_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_Tests:test_symm_DL_min_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_Tests:test_symm_DL_min_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_Tests:test_symm_DL_min_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_Tests:test_symm_DL_min_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_Tests:test_symm_DL_min_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_Tests:test_symm_DL_min_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_Tests:test_symm_DL_min_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_Tests:test_symm_DL_min_omega": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_Tests:test_symm_DL_min_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_Tests:test_symm_DL_min_pro_close": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_Tests:test_symm_DL_min_rama": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_Tests:test_symm_DL_min_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_Tests:test_symm_DL_min_rama_prepro2": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_Tests:test_symm_DL_min_talaris2014": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_Tests:test_symm_DL_min_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_beta_sfxn": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_current_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_intra_sol_xover4": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_lk_ball_wtd": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_omega": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_pro_close": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_rama": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_rama_prepro2": {
"log": "",
"state": "passed"
},
"core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:SymmDLTests:test_symm_DL_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmDLTests:test_symm_DL_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmDLTests:test_symm_DL_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:SymmDLTests:test_symm_DL_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmDLTests:test_symm_DL_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmDLTests:test_symm_DL_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmDLTests:test_symm_DL_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLTests:test_symm_DL_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmDLTests:test_symm_DL_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmDLTests:test_symm_DL_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmDLTests:test_symm_DL_omega": {
"log": "",
"state": "passed"
},
"core:SymmDLTests:test_symm_DL_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmDLTests:test_symm_DL_pro_close": {
"log": "",
"state": "passed"
},
"core:SymmDLTests:test_symm_DL_rama": {
"log": "",
"state": "passed"
},
"core:SymmDLTests:test_symm_DL_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmDLTests:test_symm_DL_rama_prepro2": {
"log": "",
"state": "passed"
},
"core:SymmDLTests:test_symm_DL_talaris2014": {
"log": "",
"state": "passed"
},
"core:SymmDLTests:test_symm_DL_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAATests:test_symm_DL_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAATests:test_symm_DL_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAATests:test_symm_DL_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAATests:test_symm_DL_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAATests:test_symm_DL_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAATests:test_symm_DL_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAATests:test_symm_DL_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAATests:test_symm_DL_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAATests:test_symm_DL_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAATests:test_symm_DL_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAATests:test_symm_DL_omega": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAATests:test_symm_DL_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAATests:test_symm_DL_pro_close": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAATests:test_symm_DL_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAATests:test_symm_DL_rama_prepro2": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAATests:test_symm_DL_ref2015": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAATests:test_symm_DL_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAA_betaTests:test_symm_DL_beta": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAA_betaTests:test_symm_DL_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAA_betaTests:test_symm_DL_default_beta_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAA_betaTests:test_symm_DL_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAA_betaTests:test_symm_DL_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAA_betaTests:test_symm_DL_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAA_betaTests:test_symm_DL_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAA_betaTests:test_symm_DL_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAA_betaTests:test_symm_DL_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAA_betaTests:test_symm_DL_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAA_betaTests:test_symm_DL_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAA_betaTests:test_symm_DL_omega": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAA_betaTests:test_symm_DL_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAA_betaTests:test_symm_DL_pro_close": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAA_betaTests:test_symm_DL_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAA_betaTests:test_symm_DL_rama_prepro2": {
"log": "",
"state": "passed"
},
"core:SymmDL_NCAA_betaTests:test_symm_DL_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:SymmDL_beta_Tests:test_symm_DL_beta": {
"log": "",
"state": "passed"
},
"core:SymmDL_beta_Tests:test_symm_DL_beta_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmDL_beta_Tests:test_symm_DL_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmDL_beta_Tests:test_symm_DL_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:SymmDL_beta_Tests:test_symm_DL_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmDL_beta_Tests:test_symm_DL_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmDL_beta_Tests:test_symm_DL_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmDL_beta_Tests:test_symm_DL_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmDL_beta_Tests:test_symm_DL_fa_intra_sol_xover4": {
"log": "",
"state": "passed"
},
"core:SymmDL_beta_Tests:test_symm_DL_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmDL_beta_Tests:test_symm_DL_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmDL_beta_Tests:test_symm_DL_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmDL_beta_Tests:test_symm_DL_lk_ball_wtd": {
"log": "",
"state": "passed"
},
"core:SymmDL_beta_Tests:test_symm_DL_omega": {
"log": "",
"state": "passed"
},
"core:SymmDL_beta_Tests:test_symm_DL_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmDL_beta_Tests:test_symm_DL_pro_close": {
"log": "",
"state": "passed"
},
"core:SymmDL_beta_Tests:test_symm_DL_rama": {
"log": "",
"state": "passed"
},
"core:SymmDL_beta_Tests:test_symm_DL_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmDL_beta_Tests:test_symm_DL_rama_prepro2": {
"log": "",
"state": "passed"
},
"core:SymmDL_beta_Tests:test_symm_DL_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:SymmDL_nmethyl_Tests:test_symm_DL_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmDL_nmethyl_Tests:test_symm_DL_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmDL_nmethyl_Tests:test_symm_DL_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:SymmDL_nmethyl_Tests:test_symm_DL_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmDL_nmethyl_Tests:test_symm_DL_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmDL_nmethyl_Tests:test_symm_DL_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmDL_nmethyl_Tests:test_symm_DL_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmDL_nmethyl_Tests:test_symm_DL_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmDL_nmethyl_Tests:test_symm_DL_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmDL_nmethyl_Tests:test_symm_DL_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmDL_nmethyl_Tests:test_symm_DL_omega": {
"log": "",
"state": "passed"
},
"core:SymmDL_nmethyl_Tests:test_symm_DL_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmDL_nmethyl_Tests:test_symm_DL_pro_close": {
"log": "",
"state": "passed"
},
"core:SymmDL_nmethyl_Tests:test_symm_DL_rama": {
"log": "",
"state": "passed"
},
"core:SymmDL_nmethyl_Tests:test_symm_DL_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmDL_nmethyl_Tests:test_symm_DL_rama_prepro2": {
"log": "",
"state": "passed"
},
"core:SymmDL_nmethyl_Tests:test_symm_DL_talaris2014": {
"log": "",
"state": "passed"
},
"core:SymmDL_nmethyl_Tests:test_symm_DL_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:SymmDL_peptoid_Tests:test_peptoid_mirroring": {
"log": "",
"state": "passed"
},
"core:SymmDL_peptoid_Tests:test_symm_DL_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmDL_peptoid_Tests:test_symm_DL_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmDL_peptoid_Tests:test_symm_DL_dslf_fa13": {
"log": "",
"state": "passed"
},
"core:SymmDL_peptoid_Tests:test_symm_DL_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmDL_peptoid_Tests:test_symm_DL_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmDL_peptoid_Tests:test_symm_DL_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmDL_peptoid_Tests:test_symm_DL_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmDL_peptoid_Tests:test_symm_DL_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmDL_peptoid_Tests:test_symm_DL_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmDL_peptoid_Tests:test_symm_DL_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmDL_peptoid_Tests:test_symm_DL_omega": {
"log": "",
"state": "passed"
},
"core:SymmDL_peptoid_Tests:test_symm_DL_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmDL_peptoid_Tests:test_symm_DL_pro_close": {
"log": "",
"state": "passed"
},
"core:SymmDL_peptoid_Tests:test_symm_DL_rama": {
"log": "",
"state": "passed"
},
"core:SymmDL_peptoid_Tests:test_symm_DL_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmDL_peptoid_Tests:test_symm_DL_rama_prepro2": {
"log": "",
"state": "passed"
},
"core:SymmDL_peptoid_Tests:test_symm_DL_talaris2014": {
"log": "",
"state": "passed"
},
"core:SymmDL_peptoid_Tests:test_symm_DL_yhh_planarity": {
"log": "",
"state": "passed"
},
"core:SymmDataLoaderTests:test_SymmDataLoader": {
"log": "",
"state": "passed"
},
"core:SymmGlyMinTests:test_single_gly_min_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmGlyMinTests:test_symm_gly_min_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmGlyMinTests:test_symm_gly_min_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmGlyMinTests:test_symm_gly_min_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmGlyMinTests:test_symm_gly_min_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmGlyMinTests:test_symm_gly_min_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmGlyMinTests:test_symm_gly_min_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmGlyMinTests:test_symm_gly_min_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmGlyMinTests:test_symm_gly_min_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmGlyMinTests:test_symm_gly_min_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmGlyMinTests:test_symm_gly_min_omega": {
"log": "",
"state": "passed"
},
"core:SymmGlyMinTests:test_symm_gly_min_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmGlyMinTests:test_symm_gly_min_rama": {
"log": "",
"state": "passed"
},
"core:SymmGlyMinTests:test_symm_gly_min_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmGlyMinTests:test_symm_gly_min_talaris2014": {
"log": "",
"state": "passed"
},
"core:SymmGlyMinTests:test_symm_gly_min_talaris2014_cart": {
"log": "",
"state": "passed"
},
"core:SymmGlyMinTests:test_two_gly_min_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmGlyMin_betanov15_Tests:test_single_gly_min_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_beta_nov15": {
"log": "",
"state": "passed"
},
"core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_beta_nov15_cart": {
"log": "",
"state": "passed"
},
"core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_intra_sol_xover4": {
"log": "",
"state": "passed"
},
"core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_lk_ball_wtd": {
"log": "",
"state": "passed"
},
"core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_omega": {
"log": "",
"state": "passed"
},
"core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_rama": {
"log": "",
"state": "passed"
},
"core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmGlyMin_betanov15_Tests:test_two_gly_min_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmGlyTests:test_symm_gly_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmGlyTests:test_symm_gly_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmGlyTests:test_symm_gly_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmGlyTests:test_symm_gly_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmGlyTests:test_symm_gly_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmGlyTests:test_symm_gly_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmGlyTests:test_symm_gly_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmGlyTests:test_symm_gly_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmGlyTests:test_symm_gly_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmGlyTests:test_symm_gly_omega": {
"log": "",
"state": "passed"
},
"core:SymmGlyTests:test_symm_gly_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmGlyTests:test_symm_gly_rama": {
"log": "",
"state": "passed"
},
"core:SymmGlyTests:test_symm_gly_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmGlyTests:test_symm_gly_talaris2014": {
"log": "",
"state": "passed"
},
"core:SymmGly_betanov15_Tests:test_symm_gly_beta_nov15": {
"log": "",
"state": "passed"
},
"core:SymmGly_betanov15_Tests:test_symm_gly_cart_bonded": {
"log": "",
"state": "passed"
},
"core:SymmGly_betanov15_Tests:test_symm_gly_default_scorefxn": {
"log": "",
"state": "passed"
},
"core:SymmGly_betanov15_Tests:test_symm_gly_fa_atr": {
"log": "",
"state": "passed"
},
"core:SymmGly_betanov15_Tests:test_symm_gly_fa_dun": {
"log": "",
"state": "passed"
},
"core:SymmGly_betanov15_Tests:test_symm_gly_fa_elec": {
"log": "",
"state": "passed"
},
"core:SymmGly_betanov15_Tests:test_symm_gly_fa_intra_rep": {
"log": "",
"state": "passed"
},
"core:SymmGly_betanov15_Tests:test_symm_gly_fa_intra_sol_xover4": {
"log": "",
"state": "passed"
},
"core:SymmGly_betanov15_Tests:test_symm_gly_fa_rep": {
"log": "",
"state": "passed"
},
"core:SymmGly_betanov15_Tests:test_symm_gly_fa_sol": {
"log": "",
"state": "passed"
},
"core:SymmGly_betanov15_Tests:test_symm_gly_hbonds": {
"log": "",
"state": "passed"
},
"core:SymmGly_betanov15_Tests:test_symm_gly_lk_ball_wtd": {
"log": "",
"state": "passed"
},
"core:SymmGly_betanov15_Tests:test_symm_gly_omega": {
"log": "",
"state": "passed"
},
"core:SymmGly_betanov15_Tests:test_symm_gly_p_aa_pp": {
"log": "",
"state": "passed"
},
"core:SymmGly_betanov15_Tests:test_symm_gly_rama": {
"log": "",
"state": "passed"
},
"core:SymmGly_betanov15_Tests:test_symm_gly_rama_prepro": {
"log": "",
"state": "passed"
},
"core:SymmLinMemInteractionGraphTests:test_sym_linmem_ig_with_asu_in_middle": {
"log": "",
"state": "passed"
},
"core:SymmLinMemInteractionGraphTests:test_symm_minimalist_ig": {
"log": "",
"state": "passed"
},
"core:SymmMinimalistInteractionGraphTests:test_symm_minimalist_ig": {
"log": "",
"state": "passed"
},
"core:SymmetricConformationTests:test_symmetric_conformation": {
"log": "",
"state": "passed"
},
"core:SymmetricMinimizerTests:test_c2_symm_score": {
"log": "",
"state": "passed"
},
"core:SymmetricMinimizerTests:test_c3_symm_score": {
"log": "",
"state": "passed"
},
"core:SymmetricMinimizerTests:test_cs_symm_score": {
"log": "",
"state": "passed"
},
"core:SymmetricMinimizerTests:test_fibril_symm_score": {
"log": "",
"state": "passed"
},
"core:SymmetricRotamerTrials:test_symmetric_rotamer_trials": {
"log": "",
"state": "passed"
},
"core:SymmetricScoreTest:test_SymmetricScoreTest": {
"log": "",
"state": "passed"
},
"core:Symmetric_Binary_Protein_Silent_File_Tests:test_save_and_restore": {
"log": "",
"state": "passed"
},
"core:SymmetryUtilTests:test_make_score_function_consistent": {
"log": "",
"state": "passed"
},
"core:SymmetryUtilTests:test_symmetrize_fold_tree": {
"log": "",
"state": "passed"
},
"core:TableVsAnalyticEtableTests:test_etable_analytic_derivatives": {
"log": "",
"state": "passed"
},
"core:TableVsAnalyticEtableTests:test_etable_analytic_lk_individual": {
"log": "",
"state": "passed"
},
"core:TaskOperationFactoryTests:test_TaskOperationFactory_all_TaskOperation_all_attributes_have_descriptions": {
"log": "",
"state": "passed"
},
"core:TaskOperationFactoryTests:test_TaskOperationFactory_all_TaskOperation_complexTypes_have_descriptions": {
"log": "",
"state": "passed"
},
"core:TaskOperationFactoryTests:test_all_task_operations_define_valid_xsds": {
"log": "",
"state": "passed"
},
"core:TaskOperationFactoryTests:test_task_op_factory_w_bad_xsd": {
"log": "",
"state": "passed"
},
"core:TaskOperationFactoryTests:test_task_op_factory_xsd_creation": {
"log": "",
"state": "passed"
},
"core:TaskOperationsTests:test_DisallowIfNonnativeTaskOperation": {
"log": "",
"state": "passed"
},
"core:TaskOperationsTests:test_ProhibitResidueProperties": {
"log": "",
"state": "passed"
},
"core:TaskOperationsTests:test_ProhibitSpecifiedBaseResidueTypes": {
"log": "",
"state": "passed"
},
"core:TaskOperationsTests:test_ReplicateTaskTaskOperation": {
"log": "",
"state": "passed"
},
"core:TaskOperationsTests:test_RestrictToResidueProperties": {
"log": "",
"state": "passed"
},
"core:TaskOperationsTests:test_RestrictToSpecifiedBaseResidueTypes": {
"log": "",
"state": "passed"
},
"core:TaskUtilTests:test_linear_sequence_motif_parsing": {
"log": "",
"state": "passed"
},
"core:TaskUtilTests:test_res_agnostic_command_parsing": {
"log": "",
"state": "passed"
},
"core:TaskUtilTests:test_sequence_motif_parsing": {
"log": "",
"state": "passed"
},
"core:TestAsymmetricUnitSelector:test_select_master_subunit_selector": {
"log": "",
"state": "passed"
},
"core:TestAutoDetectGlycanConnections:test_auto_detect_mmtf_readwrite": {
"log": "",
"state": "passed"
},
"core:TestAutoDetectGlycanConnections:test_auto_detect_pdb_read": {
"log": "",
"state": "passed"
},
"core:TestCyclicCoordinateDescentMath:test_angle_backward": {
"log": "",
"state": "passed"
},
"core:TestCyclicCoordinateDescentMath:test_angle_forward": {
"log": "",
"state": "passed"
},
"core:TestCyclicCoordinateDescentMath:test_dev": {
"log": "",
"state": "passed"
},
"core:ThreeLetterCodeAmbiguityTests:test_resolution_of_linkage_information": {
"log": "",
"state": "passed"
},
"core:ThreeLetterCodeAmbiguityTests:test_resolution_of_shared_3_letter_codes": {
"log": "",
"state": "passed"
},
"core:TopOutFuncTests:test_serialize_TopOutFunc": {
"log": "",
"state": "passed"
},
"core:USOGFuncTests:test_serialize_USOGFunc": {
"log": "",
"state": "passed"
},
"core:UltraLightResidueTests:test_ultralight": {
"log": "",
"state": "passed"
},
"core:UnfoldedStateEnergyTests:test_residue_energy_default_file_weights": {
"log": "",
"state": "passed"
},
"core:UnfoldedStateEnergyTests:test_residue_energy_emap_weights": {
"log": "",
"state": "passed"
},
"core:UnfoldedStateEnergyTests:test_residue_energy_no_weights": {
"log": "",
"state": "passed"
},
"core:UnfoldedStatePotentialTests:test_pose_raw_unfolded_state_energymap": {
"log": "",
"state": "passed"
},
"core:UnfoldedStatePotentialTests:test_raw_unfolded_state_energymap": {
"log": "",
"state": "passed"
},
"core:UseBicubicInterpolationTest:test_rama_maps": {
"log": "",
"state": "passed"
},
"core:UseBicubicInterpolationTest:test_specific_parts_rama_map": {
"log": "",
"state": "passed"
},
"core:UtilTest:test_filter": {
"log": "",
"state": "passed"
},
"core:VDW_EnergyTests:test_vdw_trie_vs_trie": {
"log": "",
"state": "passed"
},
"core:ValidateBetaBinariesTests:test_beta_binaries": {
"log": "",
"state": "passed"
},
"core:ValidateDefaultBinariesTests:test_dun10_binaries": {
"log": "",
"state": "passed"
},
"core:ValidateDun02BinariesTests:test_dun02_binaries": {
"log": "",
"state": "passed"
},
"core:ValidateDun02CorrectBinariesTests:test_dun02_correct_binaries": {
"log": "",
"state": "passed"
},
"core:ValidateTalarisBinariesTests:test_talaris_binaries": {
"log": "",
"state": "passed"
},
"core:VallTests:test_SecStructGen": {
"log": "",
"state": "passed"
},
"core:VallTests:test_catalog": {
"log": "",
"state": "passed"
},
"core:VallTests:test_vall_library_from_file": {
"log": "",
"state": "passed"
},
"core:VariantTypeTests:test_general_residue_virtualization": {
"log": "",
"state": "passed"
},
"core:VirtualResidueScoreTest:test_centroid_vrt_scores": {
"log": "",
"state": "passed"
},
"core:VirtualResidueScoreTest:test_fa_vrt_scores": {
"log": "",
"state": "passed"
},
"core:VirtualSelectorTests:test_virtualselector": {
"log": "",
"state": "passed"
},
"core:VoidsPenaltyEnergyTests:test_packing_success": {
"log": "",
"state": "passed"
},
"core:VoidsPenaltyEnergyTests_symm:test_packing_success": {
"log": "",
"state": "passed"
},
"core:VoidsPenaltyVoxelGridTests:test_compute_bounding_box": {
"log": "",
"state": "passed"
},
"core:VoidsPenaltyVoxelGridTests:test_voxel_grid": {
"log": "",
"state": "passed"
},
"core:VoidsPenaltyVoxelGridTests_rotamer_setup:test_rotamer_setup": {
"log": "",
"state": "passed"
},
"core:VoidsPenaltyVoxelGridTests_rotamer_setup_2:test_rotamer_setup_2": {
"log": "",
"state": "passed"
},
"core:WaterMediatedHbondMetricTests:test_basic_functions": {
"log": "",
"state": "passed"
},
"core:WaterMediatedHbondMetricTests:test_depth_one": {
"log": "",
"state": "passed"
},
"core:WaterMediatedHbondMetricTests:test_depth_one_with_self": {
"log": "",
"state": "passed"
},
"core:WaterMediatedHbondMetricTests:test_depth_two": {
"log": "",
"state": "passed"
},
"core:WaterMediatedHbondMetricTests:test_only_depth_two": {
"log": "",
"state": "passed"
},
"core:WaterMediatedHbondMetricTests:test_sele1_to_sele2": {
"log": "",
"state": "passed"
},
"core:YHHPlanarityEnergyTests:test_yhh_planarity_deriv_check_w_total_flexibility": {
"log": "",
"state": "passed"
},
"core:YHHPlanarityEnergyTests:test_yhh_planarity_start_score_start_func_match_w_partial_flexibility": {
"log": "",
"state": "passed"
},
"core:YHHPlanarityEnergyTests:test_yhh_planarity_start_score_start_func_match_w_total_flexibility": {
"log": "",
"state": "passed"
},
"core:atomtype_support_Tests:test_fullatom_retyping": {
"log": "",
"state": "passed"
},
"core:bond_support_Tests:test_find_bonds_in_rings": {
"log": "",
"state": "passed"
},
"core:bond_support_Tests:test_find_bonds_in_rings2": {
"log": "",
"state": "passed"
},
"core:component_reading_Tests:test_load_components": {
"log": "",
"state": "passed"
},
"core:conformation_stored_restypes_tests:test_cartmin_restype_noset": {
"log": "",
"state": "passed"
},
"core:conformation_stored_restypes_tests:test_load_pdb": {
"log": "",
"state": "passed"
},
"core:conformation_stored_restypes_tests:test_load_pdb_with_pose_copy": {
"log": "",
"state": "passed"
},
"core:conformation_stored_restypes_tests:test_load_restype_conf": {
"log": "",
"state": "passed"
},
"core:conformation_stored_restypes_tests:test_min_restype_noset": {
"log": "",
"state": "passed"
},
"core:conformation_stored_restypes_tests:test_pack_restype_noset": {
"log": "",
"state": "passed"
},
"core:conformation_stored_restypes_tests:test_score_restype_noset": {
"log": "",
"state": "passed"
},
"core:conformation_stored_restypes_tests:test_serialization": {
"log": "",
"state": "passed"
},
"core:geometric_rename_Tests:test_all_mismatch_name_map": {
"log": "",
"state": "passed"
},
"core:geometric_rename_Tests:test_chirality_name_map": {
"log": "",
"state": "passed"
},
"core:geometric_rename_Tests:test_disconnnected_name_map": {
"log": "",
"state": "passed"
},
"core:geometric_rename_Tests:test_extra_atom_name_map": {
"log": "",
"state": "passed"
},
"core:geometric_rename_Tests:test_identity_name_map": {
"log": "",
"state": "passed"
},
"core:geometric_rename_Tests:test_no_element_name_map": {
"log": "",
"state": "passed"
},
"core:geometric_rename_Tests:test_no_hydro_name_map": {
"log": "",
"state": "passed"
},
"core:geometric_rename_Tests:test_scoring": {
"log": "",
"state": "passed"
},
"core:geometric_rename_Tests:test_sym_one_name_map": {
"log": "",
"state": "passed"
},
"core:geometric_rename_Tests:test_too_many_atoms_name_map": {
"log": "",
"state": "passed"
},
"core:geometric_rename_Tests:test_two_letter_atoms": {
"log": "",
"state": "passed"
},
"core:glycan_PDBs_IO:test_branched": {
"log": "",
"state": "passed"
},
"core:lipid_PDBs_IO:test_branched": {
"log": "",
"state": "passed"
},
"core:metalloprotein_import:test_metalloprotein_import": {
"log": "",
"state": "passed"
},
"core:min_pack_Tests:test_min_pack": {
"log": "",
"state": "passed"
},
"core:mmcif_IO:test_mmcif_input": {
"log": "",
"state": "passed"
},
"core:mmcif_IO:test_mmcif_output": {
"log": "",
"state": "passed"
},
"core:mmcif_IO:test_mmcif_vs_pdb_input": {
"log": "",
"state": "passed"
},
"core:mmcif_IO:test_multimodel_cif": {
"log": "",
"state": "passed"
},
"core:mmtf_IO:test_add_link_and_ss_information": {
"log": "",
"state": "passed"
},
"core:mmtf_IO:test_add_or_read_extra_data": {
"log": "",
"state": "passed"
},
"core:mmtf_IO:test_aiPose_from_sfr": {
"log": "",
"state": "passed"
},
"core:mmtf_IO:test_bond_info_io": {
"log": "",
"state": "passed"
},
"core:mmtf_IO:test_mmtf_model_io": {
"log": "",
"state": "passed"
},
"core:mmtf_IO:test_mmtf_noncanonicals": {
"log": "",
"state": "passed"
},
"core:mmtf_IO:test_mmtf_roundtrip": {
"log": "",
"state": "passed"
},
"core:mmtf_IO:test_mmtf_simple_metric_IO": {
"log": "",
"state": "passed"
},
"core:mmtf_IO:test_mmtf_string_float_map_IO": {
"log": "",
"state": "passed"
},
"core:mmtf_IO:test_mmtf_testsuite": {
"log": "",
"state": "passed"
},
"core:mmtf_util:test_make_atom_num_to_sd_map": {
"log": "",
"state": "passed"
},
"core:mmtf_util:test_sd_index": {
"log": "",
"state": "passed"
},
"core:residue_io_Tests:test_graph_out": {
"log": "",
"state": "passed"
},
"core:residue_io_Tests:test_param_from_istream": {
"log": "",
"state": "passed"
},
"core:residue_support_Tests:test_make_centroid": {
"log": "",
"state": "passed"
},
"core:residue_support_Tests:test_make_centroid_no_crash": {
"log": "",
"state": "passed"
},
"core:residue_support_Tests:test_possible_nbr": {
"log": "",
"state": "passed"
},
"core:residue_support_Tests:test_recharging": {
"log": "",
"state": "passed"
},
"core:residue_support_Tests:test_renaming": {
"log": "",
"state": "passed"
},
"core:residue_support_Tests:test_rigid_matrix": {
"log": "",
"state": "passed"
},
"core:residue_support_Tests:test_shortest_path": {
"log": "",
"state": "passed"
},
"core:rtmin_setup_Tests:test_noop_test": {
"log": "",
"state": "passed"
},
"core:rtmin_setup_Tests:test_rtmin_setup": {
"log": "",
"state": "passed"
},
"core:single_mol_loading_Tests:test_file_positioning": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelFilterCreatorTests:test_devel_denovo_design_filters_CoreResiduesPerElementFilterCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelFilterCreatorTests:test_devel_denovo_design_filters_FoldabilityFilterCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelFilterCreatorTests:test_devel_replica_docking_CaIrmsdFilterCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelFilterCreatorTests:test_devel_replica_docking_FnatFilterCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelFilterCreatorTests:test_devel_replica_docking_FnonnatFilterCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelFilterCreatorTests:test_devel_replica_docking_InteractionScoreFilterCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelFilterCreatorTests:test_devel_replica_docking_IrmsdFilterCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelFilterCreatorTests:test_devel_replica_docking_LrmsdFilterCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelFilterCreatorTests:test_protocols_buns_BuriedUnsatHbondFilter2Creator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelFilterCreatorTests:test_protocols_denovo_design_filters_CavityVolumeFilterCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_denovo_design_ConnectJumpsCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_denovo_design_DumpStatsSSCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_denovo_design_GenericSimulatedAnnealerCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_denovo_design_RestrictRegionCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_domain_insertion_FusePosesNtoCMoverCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_domain_insertion_InsertionSiteTestMoverCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_domain_insertion_SetupCoiledCoilFoldTreeMoverCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_enzdes_EnzdesRemodelMoverCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_loop_creation_CCDLoopCloserCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_loop_creation_FragmentLoopInserterCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_loop_creation_IterativeLoophashLoopInserterCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_loop_creation_LoopCreationMoverCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_loop_creation_LoophashLoopInserterCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_loophash_loopclosure_LoopHashLoopClosureMoverCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_matdes_GenericSymmetricSamplerCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_matdes_StoreQuasiSymmetricTaskMoverCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_matdes_SymmetrizerMoverCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_replica_docking_AddEncounterConstraintMoverCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_replica_docking_ModulatedMoverCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_znhash_InsertZincCoordinationRemarkLinesCreator_name": {
"log": "",
"state": "passed"
},
"devel:BackwardsDevelMoverCreatorTests:test_devel_znhash_LoadZnCoordNumHbondCalculatorMoverCreator_name": {
"log": "",
"state": "passed"
},
"devel:BuildSheetTests:test_flat_sheet_grid": {
"log": "",
"state": "passed"
},
"devel:CoreResiduesPerElementFilterTests:test_bad_struct": {
"log": "",
"state": "passed"
},
"devel:CoreResiduesPerElementFilterTests:test_good_struct": {
"log": "",
"state": "passed"
},
"devel:FoldabilityFilterTests:test_foldability": {
"log": "",
"state": "passed"
},
"devel:MMTDriverTests:test_MMTDriver_end_to_end": {
"log": "",
"state": "passed"
},
"devel:MMTMinPackingJobTests:test_initialize_minpacking_job": {
"log": "",
"state": "passed"
},
"devel:MMTMinPackingJobTests:test_run_quick_minpacking": {
"log": "",
"state": "passed"
},
"devel:MMTReceiverTests:test_provide_an_empty_test": {
"log": "",
"state": "passed"
},
"devel:ZnHashTests:test_ZnCoordConstraint_score_two_matches": {
"log": "",
"state": "passed"
},
"devel:ZnHashTests:test_ZnCoordinateConstraint_transform_coordinates": {
"log": "",
"state": "passed"
},
"devel:ZnHashTests:test_score_zn_constraint_in_pose": {
"log": "",
"state": "passed"
},
"numeric:AngleFunctionTests:test_angles": {
"log": "",
"state": "passed"
},
"numeric:BicubicSpline_tests:test_bicubic_spline_data_access": {
"log": "",
"state": "passed"
},
"numeric:BoundingBoxTests:test_BoundingBox_ContainsPoint": {
"log": "",
"state": "passed"
},
"numeric:BoundingBoxTests:test_BoundingBox_DoesNotContainPoint": {
"log": "",
"state": "passed"
},
"numeric:BoundingBoxTests:test_BoundingBox_DoesNotIntersect": {
"log": "",
"state": "passed"
},
"numeric:BoundingBoxTests:test_BoundingBox_IntersectsPartialContainment": {
"log": "",
"state": "passed"
},
"numeric:BoundingBoxTests:test_BoundingBox_LowerRemains": {
"log": "",
"state": "passed"
},
"numeric:BoundingBoxTests:test_BoundingBox_UpperRemains": {
"log": "",
"state": "passed"
},
"numeric:BoundingBoxTests:tests_BoundingBox_IntersectsFullContainment": {
"log": "",
"state": "passed"
},
"numeric:CalculatorTest:test_assign": {
"log": "",
"state": "passed"
},
"numeric:CalculatorTest:test_exponent": {
"log": "",
"state": "passed"
},
"numeric:CalculatorTest:test_expression": {
"log": "",
"state": "passed"
},
"numeric:CalculatorTest:test_functions": {
"log": "",
"state": "passed"
},
"numeric:CalculatorTest:test_simple": {
"log": "",
"state": "passed"
},
"numeric:CalculatorTest:test_variables": {
"log": "",
"state": "passed"
},
"numeric:ClusteringTreeNodeTest:test_node_walk": {
"log": "",
"state": "passed"
},
"numeric:ColorUtilTests:test_hsv_rgb": {
"log": "",
"state": "passed"
},
"numeric:ColorUtilTests:test_rgb_hsv": {
"log": "",
"state": "passed"
},
"numeric:ConversionsTests:test_conversions_general": {
"log": "",
"state": "passed"
},
"numeric:CubicSpline_tests:test_cubic_spline_data_access": {
"log": "",
"state": "passed"
},
"numeric:DiscreteIntervalEncodingTreeTests:test_DiscreteIntervalEncodingTree_default_constructor": {
"log": "",
"state": "passed"
},
"numeric:DiscreteIntervalEncodingTreeTests:test_DiscreteIntervalEncodingTree_find_elements": {
"log": "",
"state": "passed"
},
"numeric:DiscreteIntervalEncodingTreeTests:test_DiscreteIntervalEncodingTree_inorder_ranges": {
"log": "",
"state": "passed"
},
"numeric:DiscreteIntervalEncodingTreeTests:test_DiscreteIntervalEncodingTree_insert_one_element": {
"log": "",
"state": "passed"
},
"numeric:DiscreteIntervalEncodingTreeTests:test_DiscreteIntervalEncodingTree_insert_three_elements_to_one_node_left": {
"log": "",
"state": "passed"
},
"numeric:DiscreteIntervalEncodingTreeTests:test_DiscreteIntervalEncodingTree_insert_three_elements_to_one_node_right": {
"log": "",
"state": "passed"
},
"numeric:DiscreteIntervalEncodingTreeTests:test_DiscreteIntervalEncodingTree_insert_two_elements_to_one_node_left": {
"log": "",
"state": "passed"
},
"numeric:DiscreteIntervalEncodingTreeTests:test_DiscreteIntervalEncodingTree_insert_two_elements_to_one_node_right": {
"log": "",
"state": "passed"
},
"numeric:DiscreteIntervalEncodingTreeTests:test_DiscreteIntervalEncodingTree_insert_two_elements_to_two_nodes_left": {
"log": "",
"state": "passed"
},
"numeric:DiscreteIntervalEncodingTreeTests:test_DiscreteIntervalEncodingTree_insert_two_elements_to_two_nodes_right": {
"log": "",
"state": "passed"
},
"numeric:DiscreteIntervalEncodingTreeTests:test_diet_with_insertion_order_from_jd3": {
"log": "",
"state": "passed"
},
"numeric:DistributionSamplerTest:test_normal": {
"log": "",
"state": "passed"
},
"numeric:EulerAnglesTests:test_distance_calculation": {
"log": "",
"state": "passed"
},
"numeric:EulerAnglesTests:test_rotation_matrix_conversion": {
"log": "",
"state": "passed"
},
"numeric:FFTTests:test_1D_transform": {
"log": "",
"state": "passed"
},
"numeric:FFTTests:test_2D_transform": {
"log": "",
"state": "passed"
},
"numeric:FFTTests:test_3D_transform": {
"log": "",
"state": "passed"
},
"numeric:FFTTests:test_small_transform": {
"log": "",
"state": "passed"
},
"numeric:GeneralizedEigenSolverTests:test_2x2_complex_problem": {
"log": "",
"state": "passed"
},
"numeric:GeneralizedEigenSolverTests:test_2x2_real_problem": {
"log": "",
"state": "passed"
},
"numeric:GeneralizedEigenSolverTests:test_4x4_complex_problem": {
"log": "",
"state": "passed"
},
"numeric:GeneralizedEigenSolverTests:test_4x4_mixed_problem": {
"log": "",
"state": "passed"
},
"numeric:GeneralizedEigenSolverTests:test_4x4_real_problem": {
"log": "",
"state": "passed"
},
"numeric:GeneralizedEigenSolverTests:test_error_conditions": {
"log": "",
"state": "passed"
},
"numeric:GeneralizedEigenSolverTests:test_public_interface": {
"log": "",
"state": "passed"
},
"numeric:HistogramTests:test_Histogram_Constructors": {
"log": "",
"state": "passed"
},
"numeric:HistogramTests:test_Histogram_bounds_flat": {
"log": "",
"state": "passed"
},
"numeric:HistogramTests:test_Histogram_bounds_linear": {
"log": "",
"state": "passed"
},
"numeric:HistogramTests:test_Histogram_interpolation_flat": {
"log": "",
"state": "passed"
},
"numeric:HistogramTests:test_Histogram_interpolation_linear": {
"log": "",
"state": "passed"
},
"numeric:HistogramTests:test_Histogram_interpolation_periodic_linear": {
"log": "",
"state": "passed"
},
"numeric:HistogramTests:test_derivative_linear": {
"log": "",
"state": "passed"
},
"numeric:HistogramTests:test_derivative_periodic_linear": {
"log": "",
"state": "passed"
},
"numeric:HomogenousTransformTests:test_HomogeneousTransform_default_constructor": {
"log": "",
"state": "passed"
},
"numeric:HomogenousTransformTests:test_HomogeneousTransform_matrix_constructor": {
"log": "",
"state": "passed"
},
"numeric:HomogenousTransformTests:test_HomogenousTransform_multiplication": {
"log": "",
"state": "passed"
},
"numeric:HomogenousTransformTests:test_HomogenousTransform_vector_multiplication": {
"log": "",
"state": "passed"
},
"numeric:HomogenousTransformTests:test_euler_angle_measurement": {
"log": "",
"state": "passed"
},
"numeric:HomogenousTransformTests:test_euler_angle_measurement2": {
"log": "",
"state": "passed"
},
"numeric:HomogenousTransformTests:test_euler_angle_measurement_ZYX": {
"log": "",
"state": "passed"
},
"numeric:HomogenousTransformTests:test_gimbal_lock_ZYX": {
"log": "",
"state": "passed"
},
"numeric:HomogenousTransformTests:test_ht_inverse": {
"log": "",
"state": "passed"
},
"numeric:HomogenousTransformTests:test_z_rotation_bug": {
"log": "",
"state": "passed"
},
"numeric:InterpolateTest:test_linear_ascending": {
"log": "",
"state": "passed"
},
"numeric:InterpolateTest:test_linear_descending": {
"log": "",
"state": "passed"
},
"numeric:KDTreeTests:test_basic_kdtree": {
"log": "",
"state": "passed"
},
"numeric:KDTreeTests:test_linear_transformation": {
"log": "",
"state": "passed"
},
"numeric:KDTreeTests:test_naive_nn": {
"log": "",
"state": "passed"
},
"numeric:KDTreeTests:test_nearest_neighbors": {
"log": "",
"state": "passed"
},
"numeric:KDTreeTests:test_nn_dist": {
"log": "",
"state": "passed"
},
"numeric:KDTreeTests:test_points": {
"log": "",
"state": "passed"
},
"numeric:MathMatrix_serialization:test_serialization": {
"log": "",
"state": "passed"
},
"numeric:MathNTensorIOTests:test_readTensorFromFile": {
"log": "",
"state": "passed"
},
"numeric:MathNTensorTests:test_convert_to_MathMatrix": {
"log": "",
"state": "passed"
},
"numeric:MathNTensorTests:test_maxmin": {
"log": "",
"state": "passed"
},
"numeric:MinimalClashHashTest:test_that_it_works": {
"log": "",
"state": "passed"
},
"numeric:MultiDimensionalHistogramTests:test_MultiDimensionalHistogram": {
"log": "",
"state": "passed"
},
"numeric:NumericFunctionsTests:test_numeric_functions_gcd": {
"log": "",
"state": "passed"
},
"numeric:NumericFunctionsTests:test_numeric_functions_mod": {
"log": "",
"state": "passed"
},
"numeric:NumericFunctionsTests:test_numeric_functions_nearest": {
"log": "",
"state": "passed"
},
"numeric:NumericFunctionsTests:test_numeric_functions_nint": {
"log": "",
"state": "passed"
},
"numeric:NumericFunctionsTests:test_numeric_functions_remainder": {
"log": "",
"state": "passed"
},
"numeric:NumericUtilTests:test_clamp": {
"log": "",
"state": "passed"
},
"numeric:NumericUtilTests:test_find_nearest": {
"log": "",
"state": "passed"
},
"numeric:NumericUtilTests:test_log": {
"log": "",
"state": "passed"
},
"numeric:NumericUtilTests:test_max": {
"log": "",
"state": "passed"
},
"numeric:NumericUtilTests:test_mean": {
"log": "",
"state": "passed"
},
"numeric:NumericUtilTests:test_median": {
"log": "",
"state": "passed"
},
"numeric:NumericUtilTests:test_min": {
"log": "",
"state": "passed"
},
"numeric:OneDHistogramTests:test_one_d_histogram": {
"log": "",
"state": "passed"
},
"numeric:PCATests:test_first_pc": {
"log": "",
"state": "passed"
},
"numeric:PCATests:test_pca": {
"log": "",
"state": "passed"
},
"numeric:PolycubicSplineTests:test_bicubic_spline_symmetry": {
"log": "",
"state": "passed"
},
"numeric:PolycubicSplineTests:test_cubic_spline_symmetry": {
"log": "",
"state": "passed"
},
"numeric:PolycubicSplineTests:test_polycubic_spline_3_data_access": {
"log": "",
"state": "passed"
},
"numeric:PolycubicSplineTests:test_polycubic_spline_4_data_access": {
"log": "",
"state": "passed"
},
"numeric:PolycubicSplineTests:test_tetracubic_spline_symmetry": {
"log": "",
"state": "passed"
},
"numeric:PolycubicSplineTests:test_tricubic_polycubic_3_identical": {
"log": "",
"state": "passed"
},
"numeric:PolycubicSplineTests:test_tricubic_spline_symmetry": {
"log": "",
"state": "passed"
},
"numeric:ProbUtil:test_cumulative": {
"log": "",
"state": "passed"
},
"numeric:ProbUtil:test_normalize": {
"log": "",
"state": "passed"
},
"numeric:ProbUtil:test_prenormalized_input": {
"log": "",
"state": "passed"
},
"numeric:ProbUtil:test_product": {
"log": "",
"state": "passed"
},
"numeric:ProbUtil:test_read_probabilities": {
"log": "",
"state": "passed"
},
"numeric:ProbUtil:test_sum": {
"log": "",
"state": "passed"
},
"numeric:ProjectionAreaTests:test_projection_area": {
"log": "",
"state": "passed"
},
"numeric:QuaternionTests:test_Quaternion_conjugate": {
"log": "",
"state": "passed"
},
"numeric:QuaternionTests:test_Quaternion_constructors": {
"log": "",
"state": "passed"
},
"numeric:QuaternionTests:test_Quaternion_normalize": {
"log": "",
"state": "passed"
},
"numeric:RandomSystemTests:test_SaveAndRestore": {
"log": "",
"state": "passed"
},
"numeric:RandomSystemTests:test_Uniform": {
"log": "",
"state": "passed"
},
"numeric:RandomSystemTests:test_mt19937": {
"log": "",
"state": "passed"
},
"numeric:ReservoirSamplingTests:test_reservoir_sample": {
"log": "",
"state": "passed"
},
"numeric:RingPlaneFunctionsTests:test_non_planar_rings": {
"log": "",
"state": "passed"
},
"numeric:RingPlaneFunctionsTests:test_planar_rings": {
"log": "",
"state": "passed"
},
"numeric:RingPlaneFunctionsTests:test_planar_rings_without_checking_for_atom_planarity": {
"log": "",
"state": "passed"
},
"numeric:RingPlaneFunctionsTests:test_residual_squared_of_points_to_plane": {
"log": "",
"state": "passed"
},
"numeric:SphericalVectorTests:test_sphericalVector_ArithmaticOperators": {
"log": "",
"state": "passed"
},
"numeric:SphericalVectorTests:test_sphericalVector_Construct": {
"log": "",
"state": "passed"
},
"numeric:SphericalVectorTests:test_sphericalVector_CopyConstruct": {
"log": "",
"state": "passed"
},
"numeric:StatisticsFunctionsTests:test_kl_divergence": {
"log": "",
"state": "passed"
},
"numeric:StatisticsFunctionsTests:test_pearson_r": {
"log": "",
"state": "passed"
},
"numeric:StatisticsFunctionsTests:test_spearman_r": {
"log": "",
"state": "passed"
},
"numeric:TricubicSplineTests:test_tricubic_spline_data_access": {
"log": "",
"state": "passed"
},
"numeric:TwoDHistogramTests:test_two_d_histogram": {
"log": "",
"state": "passed"
},
"numeric:VoxelArrayTest:test_1": {
"log": "",
"state": "passed"
},
"numeric:VoxelArrayTest:test_2": {
"log": "",
"state": "passed"
},
"numeric:VoxelArrayTest:test_3": {
"log": "",
"state": "passed"
},
"numeric:VoxelGridTests:test_grid_creation": {
"log": "",
"state": "passed"
},
"numeric:VoxelGridTests:test_neighbor_detection_multidimensional": {
"log": "",
"state": "passed"
},
"numeric:VoxelGridTests:test_neighbor_detection_onedimensional": {
"log": "",
"state": "passed"
},
"numeric:WeightedReservoirSamplerTest:test_more_items_than_samples": {
"log": "",
"state": "passed"
},
"numeric:WeightedReservoirSamplerTest:test_no_samples_considered": {
"log": "",
"state": "passed"
},
"numeric:WeightedSamplerTests:test_WeightedSampler": {
"log": "",
"state": "passed"
},
"numeric:WrapAnglesTest:test_wrap_180": {
"log": "",
"state": "passed"
},
"numeric:WrapAnglesTest:test_wrap_2pi": {
"log": "",
"state": "passed"
},
"numeric:WrapAnglesTest:test_wrap_360": {
"log": "",
"state": "passed"
},
"numeric:WrapAnglesTest:test_wrap_pi": {
"log": "",
"state": "passed"
},
"numeric:XYZFunctionsTests:test_alignVectorSets": {
"log": "",
"state": "passed"
},
"numeric:XYZFunctionsTests:test_xyz_farray_conversions": {
"log": "",
"state": "passed"
},
"numeric:XYZFunctionsTests:test_xyz_functions_AngleOperations": {
"log": "",
"state": "passed"
},
"numeric:XYZFunctionsTests:test_xyz_functions_Eigenvalues": {
"log": "",
"state": "passed"
},
"numeric:XYZFunctionsTests:test_xyz_functions_Operations": {
"log": "",
"state": "passed"
},
"numeric:XYZFunctionsTests:test_xyz_functions_Rotation": {
"log": "",
"state": "passed"
},
"numeric:XYZFunctionsTests:test_xyz_functions_SphericalConversions": {
"log": "",
"state": "passed"
},
"numeric:XYZFunctionsTests:test_xyz_functions_center_of_mass": {
"log": "",
"state": "passed"
},
"numeric:XYZFunctionsTests:test_xyz_functions_closest_point_on_line": {
"log": "",
"state": "passed"
},
"numeric:XYZFunctionsTests:test_xyz_functions_euler_rotations": {
"log": "",
"state": "passed"
},
"numeric:XYZMatrixTests:test_xyzMatrix_Access": {
"log": "",
"state": "passed"
},
"numeric:XYZMatrixTests:test_xyzMatrix_AssignFromContiguous": {
"log": "",
"state": "passed"
},
"numeric:XYZMatrixTests:test_xyzMatrix_AssignFromRowsCols": {
"log": "",
"state": "passed"
},
"numeric:XYZMatrixTests:test_xyzMatrix_AssignFromSingleValue": {
"log": "",
"state": "passed"
},
"numeric:XYZMatrixTests:test_xyzMatrix_CalculatedProperties": {
"log": "",
"state": "passed"
},
"numeric:XYZMatrixTests:test_xyzMatrix_ConstructFromContiguous": {
"log": "",
"state": "passed"
},
"numeric:XYZMatrixTests:test_xyzMatrix_ConstructFromValues": {
"log": "",
"state": "passed"
},
"numeric:XYZMatrixTests:test_xyzMatrix_ConstructFromVectors": {
"log": "",
"state": "passed"
},
"numeric:XYZMatrixTests:test_xyzMatrix_ConstructIdentity": {
"log": "",
"state": "passed"
},
"numeric:XYZMatrixTests:test_xyzMatrix_Operations": {
"log": "",
"state": "passed"
},
"numeric:XYZTransformTests:test_3D_transformation": {
"log": "",
"state": "passed"
},
"numeric:XYZTripleTests:test_xyzTriple_Accessors": {
"log": "",
"state": "passed"
},
"numeric:XYZTripleTests:test_xyzTriple_BinaryOperations": {
"log": "",
"state": "passed"
},
"numeric:XYZTripleTests:test_xyzTriple_ConstructFrom1DArrayPointer": {
"log": "",
"state": "passed"
},
"numeric:XYZTripleTests:test_xyzTriple_ConstructFrom2DArrayPointer": {
"log": "",
"state": "passed"
},
"numeric:XYZTripleTests:test_xyzTriple_ConstructFromSingleValue": {
"log": "",
"state": "passed"
},
"numeric:XYZTripleTests:test_xyzTriple_Length": {
"log": "",
"state": "passed"
},
"numeric:XYZTripleTests:test_xyzTriple_Relations": {
"log": "",
"state": "passed"
},
"numeric:XYZVectorTests:test_xyzVector_Accessors": {
"log": "",
"state": "passed"
},
"numeric:XYZVectorTests:test_xyzVector_BinaryOperations": {
"log": "",
"state": "passed"
},
"numeric:XYZVectorTests:test_xyzVector_ConstructFrom1DArrayPointer": {
"log": "",
"state": "passed"
},
"numeric:XYZVectorTests:test_xyzVector_ConstructFrom2DArrayPointer": {
"log": "",
"state": "passed"
},
"numeric:XYZVectorTests:test_xyzVector_ConstructFromSingleValue": {
"log": "",
"state": "passed"
},
"numeric:XYZVectorTests:test_xyzVector_Length": {
"log": "",
"state": "passed"
},
"numeric:XYZVectorTests:test_xyzVector_Relations": {
"log": "",
"state": "passed"
},
"numeric:XYZVectorTests:test_xyzVector_Serialization": {
"log": "",
"state": "passed"
},
"numeric:agglomerative_hierarchical_clusteringTest:test_int_clustering": {
"log": "",
"state": "passed"
},
"numeric:bicubic_interpolation_function_tests:test_bicubic_interpolation_function": {
"log": "",
"state": "passed"
},
"numeric:bridgeObjectsTests:test_nonredundant_bridgeObject": {
"log": "",
"state": "passed"
},
"numeric:bridgeObjectsTests:test_symm_solutions": {
"log": "",
"state": "passed"
},
"numeric:minimum_bounding_ellipse:test_correct_ellipse_generation": {
"log": "",
"state": "passed"
},
"numeric:minimum_bounding_ellipse:test_point_in_ellipse": {
"log": "",
"state": "passed"
},
"numeric:polycubic_catmull_rom_Tests:test_cubic_conv_1D": {
"log": "",
"state": "passed"
},
"numeric:polycubic_catmull_rom_Tests:test_cubic_conv_2D": {
"log": "",
"state": "passed"
},
"numeric:polycubic_catmull_rom_Tests:test_cubic_conv_3D": {
"log": "",
"state": "passed"
},
"numeric:polycubic_catmull_rom_Tests:test_cubic_conv_4D": {
"log": "",
"state": "passed"
},
"numeric:random_functionsTests:test_binary_search_cdf": {
"log": "",
"state": "passed"
},
"numeric:random_functionsTests:test_binary_search_cdf_nentires_odd": {
"log": "",
"state": "passed"
},
"numeric:random_functionsTests:test_binary_search_cdf_w_zero_prob_values": {
"log": "",
"state": "passed"
},
"numeric:random_xyzTests:test_uniform_vector_sphere": {
"log": "",
"state": "passed"
},
"protocols:APClusterTest:test_cluster_random_3D_points": {
"log": "",
"state": "passed"
},
"protocols:AcceptToBestMoverTests:test_accept_to_best": {
"log": "",
"state": "passed"
},
"protocols:AcceptToBestMoverTests:test_accept_to_best_no_minmover": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests:test_import_AIB": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests:test_mirror_symmetry_AIB": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests:test_mirror_symmetry_AIB_before_proline": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests:test_mirror_symmetry_GLY": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests:test_mirror_symmetry_GLY_before_proline": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests:test_mirror_symmetry_sarcosine": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests:test_mirror_symmetry_sarcosine_before_proline": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests:test_symmetric_rama_prepro_scoring_AIB": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests:test_symmetric_rama_prepro_scoring_AIB_before_proline": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests:test_symmetric_rama_prepro_scoring_GLY": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests:test_symmetric_rama_prepro_scoring_GLY_before_proline": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests:test_symmetric_rama_prepro_scoring_sarcosine": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests:test_symmetric_rama_prepro_scoring_sarcosine_before_proline": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov15:test_import_AIB": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov15:test_mirror_symmetry_AIB": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov15:test_mirror_symmetry_AIB_before_proline": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov15:test_mirror_symmetry_GLY": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov15:test_mirror_symmetry_GLY_before_proline": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov15:test_mirror_symmetry_sarcosine": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov15:test_mirror_symmetry_sarcosine_before_proline": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov15:test_symmetric_rama_prepro_scoring_AIB": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov15:test_symmetric_rama_prepro_scoring_AIB_before_proline": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov15:test_symmetric_rama_prepro_scoring_GLY": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov15:test_symmetric_rama_prepro_scoring_GLY_before_proline": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov15:test_symmetric_rama_prepro_scoring_sarcosine": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov15:test_symmetric_rama_prepro_scoring_sarcosine_before_proline": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov16:test_import_AIB": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov16:test_mirror_symmetry_AIB": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov16:test_mirror_symmetry_AIB_before_proline": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov16:test_mirror_symmetry_GLY": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov16:test_mirror_symmetry_GLY_before_proline": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov16:test_mirror_symmetry_sarcosine": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov16:test_mirror_symmetry_sarcosine_before_proline": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov16:test_symmetric_rama_prepro_scoring_AIB": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov16:test_symmetric_rama_prepro_scoring_AIB_before_proline": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov16:test_symmetric_rama_prepro_scoring_GLY": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov16:test_symmetric_rama_prepro_scoring_GLY_before_proline": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov16:test_symmetric_rama_prepro_scoring_sarcosine": {
"log": "",
"state": "passed"
},
"protocols:AchiralResidueTypeTests_betanov16:test_symmetric_rama_prepro_scoring_sarcosine_before_proline": {
"log": "",
"state": "passed"
},
"protocols:AddChainBreakTests:test_pose_manipulation": {
"log": "",
"state": "passed"
},
"protocols:AddConstraintsToCurrentConformationMoverTests:test_atompair_bounded": {
"log": "",
"state": "passed"
},
"protocols:AddConstraintsToCurrentConformationMoverTests:test_atompair_harmonic": {
"log": "",
"state": "passed"
},
"protocols:AddConstraintsToCurrentConformationMoverTests:test_atompair_scalar_weighted": {
"log": "",
"state": "passed"
},
"protocols:AddConstraintsToCurrentConformationMoverTests:test_coord_bounded": {
"log": "",
"state": "passed"
},
"protocols:AddConstraintsToCurrentConformationMoverTests:test_coord_harmonic": {
"log": "",
"state": "passed"
},
"protocols:AddConstraintsToCurrentConformationMoverTests:test_sc_tip": {
"log": "",
"state": "passed"
},
"protocols:AddFlankingVirtualResiduesMoverTests:test_AddFlankingVirtualResiduesMover": {
"log": "",
"state": "passed"
},
"protocols:AddHelixSequenceConstraintsMoverTests:test_detect_helices": {
"log": "",
"state": "passed"
},
"protocols:AddHelixSequenceConstraintsMoverTests:test_limit_ala": {
"log": "",
"state": "passed"
},
"protocols:AddHelixSequenceConstraintsMoverTests:test_limit_val": {
"log": "",
"state": "passed"
},
"protocols:AddHelixSequenceConstraintsMoverTests:test_limit_val_by_hydrophobicity": {
"log": "",
"state": "passed"
},
"protocols:AddHelixSequenceConstraintsMoverTests:test_negative_nterm": {
"log": "",
"state": "passed"
},
"protocols:AddHelixSequenceConstraintsMoverTests:test_positive_cterm": {
"log": "",
"state": "passed"
},
"protocols:AddMHCEpitopeConstraintMoverTests:test_mhc_csts": {
"log": "",
"state": "passed"
},
"protocols:AddMPLigandMoverTest:test_membrane_invariant": {
"log": "",
"state": "passed"
},
"protocols:AddMPLigandMoverTest:test_membrane_plus_ligand_foldtree": {
"log": "",
"state": "passed"
},
"protocols:AddMembraneMoverTest:test_anchored_foldtree": {
"log": "",
"state": "passed"
},
"protocols:AddMembraneMoverTest:test_conformation_invariant": {
"log": "",
"state": "passed"
},
"protocols:AddMembraneMoverTest:test_default_membrane_position": {
"log": "",
"state": "passed"
},
"protocols:AddMembraneMoverTest:test_existing_membrane_rsd": {
"log": "",
"state": "passed"
},
"protocols:AddMembraneMoverTest:test_initial_foldtree": {
"log": "",
"state": "passed"
},
"protocols:AddMembraneMoverTest:test_initial_spans_setup": {
"log": "",
"state": "passed"
},
"protocols:AddMembraneMoverTest:test_membrane_jump_tracking": {
"log": "",
"state": "passed"
},
"protocols:AddMembraneMoverTest:test_membrane_rsd_tracking": {
"log": "",
"state": "passed"
},
"protocols:AddMembraneMoverTest:test_multi_mem_pose1": {
"log": "",
"state": "passed"
},
"protocols:AddMembraneMoverTest:test_multi_mem_pose2": {
"log": "",
"state": "passed"
},
"protocols:AddMembraneMoverTest:test_single_tm_span_pose": {
"log": "",
"state": "passed"
},
"protocols:AlignByResidueSelectorMoverTests:test_all_true": {
"log": "",
"state": "passed"
},
"protocols:AlignByResidueSelectorMoverTests:test_name": {
"log": "",
"state": "passed"
},
"protocols:AlignByResidueSelectorMoverTests:test_shift_aligned": {
"log": "",
"state": "passed"
},
"protocols:AlignPDBInfoToSequencesTests:test_SequenceSpecification": {
"log": "",
"state": "passed"
},
"protocols:AlignPDBInfoToSequencesTests:test_ctor_and_operators": {
"log": "",
"state": "passed"
},
"protocols:AlignPDBInfoToSequencesTests:test_dna_align": {
"log": "",
"state": "passed"
},
"protocols:AlignPDBInfoToSequencesTests:test_mode_enum": {
"log": "",
"state": "passed"
},
"protocols:AlignPDBInfoToSequencesTests:test_multiple": {
"log": "",
"state": "passed"
},
"protocols:AlignPDBInfoToSequencesTests:test_parse_target_tag": {
"log": "",
"state": "passed"
},
"protocols:AlignPDBInfoToSequencesTests:test_real_example": {
"log": "",
"state": "passed"
},
"protocols:AlignPDBInfoToSequencesTests:test_set_modes": {
"log": "",
"state": "passed"
},
"protocols:AlignPDBInfoToSequencesTests:test_single": {
"log": "",
"state": "passed"
},
"protocols:AlignPDBInfoToSequencesTests:test_throw_on_fail": {
"log": "",
"state": "passed"
},
"protocols:AlignPDBInfoToSequencesUtilTests:test_pad_sequence": {
"log": "",
"state": "passed"
},
"protocols:AlignResiduesMoverTests:test_align_theozyme": {
"log": "",
"state": "passed"
},
"protocols:AlignResiduesMoverTests:test_tomponent_cstfile": {
"log": "",
"state": "passed"
},
"protocols:AlignmentEnergyTests:test_deriv": {
"log": "",
"state": "passed"
},
"protocols:AlignmentEnergyTests:test_score_values": {
"log": "",
"state": "passed"
},
"protocols:AntibodyCDRGrafterTests:test_graft_classes": {
"log": "",
"state": "passed"
},
"protocols:AntibodyConstraintTests:test_constraints": {
"log": "",
"state": "passed"
},
"protocols:AntibodyDatabase:test_cdr_loading": {
"log": "",
"state": "passed"
},
"protocols:AntibodyDatabase:test_options_cdr_set": {
"log": "",
"state": "passed"
},
"protocols:AntibodyDesignOptions:test_native_seq": {
"log": "",
"state": "passed"
},
"protocols:AntibodyDesignOptions:test_options_graft_design": {
"log": "",
"state": "passed"
},
"protocols:AntibodyDesignOptions:test_options_seq_design": {
"log": "",
"state": "passed"
},
"protocols:AntibodyInfoTests:test_camelid": {
"log": "",
"state": "passed"
},
"protocols:AntibodyInfoTests:test_cdr_numbering_and_transform": {
"log": "",
"state": "passed"
},
"protocols:AntibodyInfoTests:test_info_functions": {
"log": "",
"state": "passed"
},
"protocols:AntibodyInfoTests:test_kink_functions": {
"log": "",
"state": "passed"
},
"protocols:AntibodyInfoTests:test_renumbering": {
"log": "",
"state": "passed"
},
"protocols:AntibodyResidueSelectorsTest:test_selectors": {
"log": "",
"state": "passed"
},
"protocols:AntibodySeqDesign:test_graft_tf_generation1": {
"log": "",
"state": "passed"
},
"protocols:AntibodySeqDesign:test_graft_tf_generation2": {
"log": "",
"state": "passed"
},
"protocols:AntibodySeqDesign:test_normal_tf_generation": {
"log": "",
"state": "passed"
},
"protocols:AntibodySeqDesign:test_task_ops": {
"log": "",
"state": "passed"
},
"protocols:AntibodySeqDesign:test_utility_functions": {
"log": "",
"state": "passed"
},
"protocols:AntibodyTaskOps:test_AddCDRProfileSetsOperation": {
"log": "",
"state": "passed"
},
"protocols:AntibodyTaskOps:test_AddCDRProfilesOperation": {
"log": "",
"state": "passed"
},
"protocols:AntibodyTaskOps:test_DisableAntibodyRegionOperation": {
"log": "",
"state": "passed"
},
"protocols:AntibodyTaskOps:test_DisableCDRsOperation": {
"log": "",
"state": "passed"
},
"protocols:AntibodyTaskOps:test_RestrictToCDRsAndNeighbors": {
"log": "",
"state": "passed"
},
"protocols:ApplyChemistryMoverTests:test_apply_chemistry": {
"log": "",
"state": "passed"
},
"protocols:ApplyChemistryMoverTests:test_xml": {
"log": "",
"state": "passed"
},
"protocols:ApplyChemistryMoverTests:test_xml_nested": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_active_variables_max": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_active_variables_min": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_active_variables_min_complicated": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_active_variables_simple": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_add_derivative": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_addition_order": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_and_expession": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_combine_functions": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_equals_expression": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_function_order": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_function_precidence": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_gt_expression": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_gte_expression": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_lt_expression": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_lte_expression": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_max": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_min": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_mix_addition_and_functions": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_mix_multiplication_and_functions": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_multiple_additions": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_multiplication_order": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_multiply_and_add_derivatives": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_multiply_and_add_derivatives2": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_multiply_derivative": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_my_addition": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_my_division": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_my_multiplication": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_my_subtraction": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_or_expession": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_parens": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_parse_functions": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_parse_mix_boolean_and_arithmetic": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_parse_simple": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_parse_variables": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_precedence": {
"log": "",
"state": "passed"
},
"protocols:ArithmeticTests:test_sqrt": {
"log": "",
"state": "passed"
},
"protocols:AtomCoordinateCstMoverTests:test_input_bounded_default": {
"log": "",
"state": "passed"
},
"protocols:AtomCoordinateCstMoverTests:test_input_harmonic_default": {
"log": "",
"state": "passed"
},
"protocols:AtomCoordinateCstMoverTests:test_input_harmonic_sidechain": {
"log": "",
"state": "passed"
},
"protocols:AtomCoordinateCstMoverTests:test_integration_native": {
"log": "",
"state": "passed"
},
"protocols:AtomCoordinateCstMoverTests:test_native_harmonic_default": {
"log": "",
"state": "passed"
},
"protocols:AtomCoordinateCstMoverTests:test_native_harmonic_sidechain": {
"log": "",
"state": "passed"
},
"protocols:AtomPairConstraintGeneratorTests:test_all_atom": {
"log": "",
"state": "passed"
},
"protocols:AtomPairConstraintGeneratorTests:test_constraints_allresidues": {
"log": "",
"state": "passed"
},
"protocols:AtomPairConstraintGeneratorTests:test_max_dist": {
"log": "",
"state": "passed"
},
"protocols:AtomPairConstraintGeneratorTests:test_native": {
"log": "",
"state": "passed"
},
"protocols:AtomPairConstraintGeneratorTests:test_residue_selector": {
"log": "",
"state": "passed"
},
"protocols:AtomicDistanceFilterTests:test_AtomicDistanceFilter": {
"log": "",
"state": "passed"
},
"protocols:BackrubMoverTest:test_BackrubMover": {
"log": "",
"state": "passed"
},
"protocols:BackrubProtocolTests:test_parse_pivots_from_residue_selector": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFeaturesReporterCreatorTests:test_all_creators_generate_correct_name_strings": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_analysis_PeptideDeriverFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_cyclic_peptide_OversaturatedHbondAcceptorFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_denovo_design_filters_ExposedHydrophobicsFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_denovo_design_filters_PreProlineFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_denovo_design_filters_SSPredictionFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_denovo_design_filters_SSShapeComplementarityFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_enzdes_DiffAtomSasaFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_enzdes_EnzScoreFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_enzdes_EnzdesScorefileFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_enzdes_LigBurialFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_enzdes_LigDSasaFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_enzdes_LigInterfaceEnergyFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_enzdes_RemoveLigandFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_enzdes_RepackWithoutLigandFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_enzdes_ResidueConformerFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_filters_CalculatorFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_filters_CombinedFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_filters_CompoundFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_filters_ContingentFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_filters_FalseFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_filters_IfThenFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_filters_MoveBeforeFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_filters_ReplicateFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_filters_StochasticFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_filters_TimeFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_fldsgn_filters_CoreDunbrackFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_fldsgn_filters_FragQualFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_fldsgn_filters_HSSTripletFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_fldsgn_filters_HelixKinkFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_fldsgn_filters_HelixPairingFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_fldsgn_filters_InterlockingAromaFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_fldsgn_filters_NcontactsFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_fldsgn_filters_ParallelBetaPairingPreferenceFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_fldsgn_filters_SecondaryStructureCountFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_fldsgn_filters_SecondaryStructureFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_fldsgn_filters_SecondaryStructureHasResidueFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_fldsgn_filters_SheetTopologyFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_helical_bundle_BundleReporterFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_indexed_structure_store_filters_FragmentLookupFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_ligand_docking_AtomCountFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_ligand_docking_ChainExistsFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_ligand_docking_CompleteConnectionsFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_ligand_docking_HBondAcceptorFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_ligand_docking_HBondDonorFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_ligand_docking_HeavyAtomFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_ligand_docking_MolarMassFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_ligand_docking_MolecularMassFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_loops_filters_LoopAnalyzerFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_matdes_ClashCheckFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_matdes_GetRBDOFValuesCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_matdes_InterfacePackingFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_matdes_OligomericAverageDegreeFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_matdes_SymUnsatHbondFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_AtomicContactCountFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_AverageDegreeFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_BindingStrainFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_BoltzmannFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_ClashWithTargetFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_DesignableResiduesFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_DisulfideFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_FNatFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_FilterScanFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_HbondsToAtomFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_HbondsToResidueFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_IRmsdFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_InterfaceHolesFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_LRmsdFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_RelativeSegmentFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_RmsdFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_RmsdSimpleFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_SSamountFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_SequenceRecoveryFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_SpecificResiduesNearInterfaceFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_StubScoreFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_StubScoreLoopsFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_protein_interface_design_filters_TorsionCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_AlaScanFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_AngleToVectorFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_AtomicContactFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_AtomicDistanceFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_AveragePathLengthFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_BuriedUnsatHbondFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_ConservedPosMutationFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_ConstraintScoreFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_DdGScanCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_DdgFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_DeltaFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_DisulfideEntropyFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_EnergyPerResidueFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_ExpiryFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_FileExistFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_FileRemoveFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_GeometryFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_HolesFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_InterRepeatContactFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_InterfaceBindingEnergyDensityFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_InterfaceSasaFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_IntraRepeatContactFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_MotifScoreFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_MultipleSigmoidsFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_MutationsFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_NMerPSSMEnergyFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_NMerSVMEnergyFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_NeighborTypeFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_NetChargeFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_NonSequentialNeighborsFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_OperatorFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_PackStatFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_PoseCommentFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_PoseInfoFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_RangeFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_RelativePoseFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_RepeatParameterFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_ReportFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_ResidueCountFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_ResidueDepthFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_ResidueDistanceFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_ResidueIEFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_ResidueSetChainEnergyFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_ResiduesInInterfaceFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_RotamerBoltzmannWeight2Creator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_RotamerBoltzmannWeightFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_SSElementMotifContactFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_SSMotifFinderFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_SavePoseConstraintToFileFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_SaveResfileToDiskFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_ScoreCutoffFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_ScoreTypeFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_ShapeComplementarityFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_SidechainRmsdFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_SigmoidFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_StemFinderFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_SymmetricMotifFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_TaskAwareSASAFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_TaskAwareScoreTypeFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_TerminusDistanceFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BackwardsProtocolsFilterCreatorTests:test_protocols_simple_filters_TotalSasaFilterCreator_name": {
"log": "",
"state": "passed"
},
"protocols:BasePairConstraintTests:test_all_constraint_possibilities": {
"log": "",
"state": "passed"
},
"protocols:BasePairConstraintTests:test_bad_when_stretched_all_constraint_possibilities": {
"log": "",
"state": "passed"
},
"protocols:BetaAlphaDisulfideTests:test_mixed_disulf": {
"log": "",
"state": "passed"
},
"protocols:BetaAlphaDisulfide_betanov15_Tests:test_mixed_disulf": {
"log": "",
"state": "passed"
},
"protocols:BetaAlphaDisulfide_betanov16_Tests:test_mixed_disulf": {
"log": "",
"state": "passed"
},
"protocols:BetaSheetArchitectTests:test_simple": {
"log": "",
"state": "passed"
},
"protocols:BetaTurnDetectionFeaturesTest:test_ramachandran_hashes": {
"log": "",
"state": "passed"
},
"protocols:BetaTurnDetectionFeaturesTest:test_validate_ramachandran_hash": {
"log": "",
"state": "passed"
},
"protocols:BlockwiseAnalysisMoverTests:test_BlockwiseAnalysisMover": {
"log": "",
"state": "passed"
},
"protocols:BlockwisePoseCompMotifMetricTests:test_BWPCMM": {
"log": "",
"state": "passed"
},
"protocols:BlockwiseShapeCompMetricTests:test_BWSCM": {
"log": "",
"state": "passed"
},
"protocols:BluePrintTests:test_blueprint": {
"log": "",
"state": "passed"
},
"protocols:BranchAngleOptimizerTest:test_BranchAngleOptimizer": {
"log": "",
"state": "passed"
},
"protocols:BridgeChainsMoverTests:test_conn_chains": {
"log": "",
"state": "passed"
},
"protocols:BridgeChainsMoverTests:test_twohelix": {
"log": "",
"state": "passed"
},
"protocols:BridgeTests:test_bridge_size_three": {
"log": "",
"state": "passed"
},
"protocols:BridgeTests:test_bridge_size_zero": {
"log": "",
"state": "passed"
},
"protocols:BridgeTests:test_bridge_two_chain": {
"log": "",
"state": "passed"
},
"protocols:BuildManagerTests:test_compatibility_check": {
"log": "",
"state": "passed"
},
"protocols:BuildManagerTests:test_dependencies": {
"log": "",
"state": "passed"
},
"protocols:BuildManagerTests:test_modify": {
"log": "",
"state": "passed"
},
"protocols:BumpGridTests:test_bool3D_corners": {
"log": "",
"state": "passed"
},
"protocols:BumpGridTests:test_bool3D_corners2": {
"log": "",
"state": "passed"
},
"protocols:BumpGridTests:test_bool3D_create_shifted_grid": {
"log": "",
"state": "passed"
},
"protocols:BumpGridTests:test_bool3D_grid_ctor": {
"log": "",
"state": "passed"
},
"protocols:BumpGridTests:test_bool3D_grid_ctor2": {
"log": "",
"state": "passed"
},
"protocols:BumpGridTests:test_bool3D_grid_with_sphere": {
"log": "",
"state": "passed"
},
"protocols:BumpGridTests:test_bool3D_grid_with_sphere2": {
"log": "",
"state": "passed"
},
"protocols:BumpGridTests:test_bool3D_grid_with_sphere_liberal": {
"log": "",
"state": "passed"
},
"protocols:BumpGridTests:test_bool3D_or_overlap": {
"log": "",
"state": "passed"
},
"protocols:BumpGridTests:test_bool3D_sphere_coverage": {
"log": "",
"state": "passed"
},
"protocols:BumpGridTests:test_bool3D_write_kinemage": {
"log": "",
"state": "passed"
},
"protocols:BumpGridTests:test_bumpgrid_for_pose": {
"log": "",
"state": "passed"
},
"protocols:CalculatorFilterTests:test_calculatorfilter": {
"log": "",
"state": "passed"
},
"protocols:CalculatorFilterTests:test_parsing": {
"log": "",
"state": "passed"
},
"protocols:ChromophoreDataReaderTests:test_access_to_nonexistent_residue": {
"log": "",
"state": "passed"
},
"protocols:ChromophoreDataReaderTests:test_initialize_from_file": {
"log": "",
"state": "passed"
},
"protocols:ChromophoreDataReaderTests:test_initialize_second_time": {
"log": "",
"state": "passed"
},
"protocols:ChromophoreDataReaderTests:test_nonexistent_file": {
"log": "",
"state": "passed"
},
"protocols:ChromophoreDataReaderTests:test_nothing_to_parse_comment_line": {
"log": "",
"state": "passed"
},
"protocols:ChromophoreDataReaderTests:test_nothing_to_parse_empty": {
"log": "",
"state": "passed"
},
"protocols:ChromophoreDataReaderTests:test_parse_correct_line": {
"log": "",
"state": "passed"
},
"protocols:ChromophoreDataReaderTests:test_parse_line_with_four_letter_atom_name": {
"log": "",
"state": "passed"
},
"protocols:ChromophoreDataReaderTests:test_parse_line_with_long_atom_name": {
"log": "",
"state": "passed"
},
"protocols:ChromophoreDataReaderTests:test_parse_line_with_wrong_number_of_columns": {
"log": "",
"state": "passed"
},
"protocols:ChromophoreDataReaderTests:test_parse_line_without_number_in_the_third_column": {
"log": "",
"state": "passed"
},
"protocols:ChunkTest:test_samples_in_range": {
"log": "",
"state": "passed"
},
"protocols:ChunkTest:test_start_stop": {
"log": "",
"state": "passed"
},
"protocols:ChunkTest:test_validity": {
"log": "",
"state": "passed"
},
"protocols:ClaimTests:test_tclaim_constructor_multi_pos": {
"log": "",
"state": "passed"
},
"protocols:ClaimTests:test_tclaim_constructor_single_pos": {
"log": "",
"state": "passed"
},
"protocols:ClassicGridTests:test_score_function": {
"log": "",
"state": "passed"
},
"protocols:ClearConstraintsMoverTests:test_it_clears_constraints": {
"log": "",
"state": "passed"
},
"protocols:ClusterTests:test_cluster_identification": {
"log": "",
"state": "passed"
},
"protocols:ClusterTests:test_features": {
"log": "",
"state": "passed"
},
"protocols:CoMTrack:test_com_init": {
"log": "",
"state": "passed"
},
"protocols:CoMTrack:test_com_reset": {
"log": "",
"state": "passed"
},
"protocols:CompoundArchitectTests:test_compound_architect_with_connection": {
"log": "",
"state": "passed"
},
"protocols:CompoundArchitectTests:test_gerard_case": {
"log": "",
"state": "passed"
},
"protocols:CompoundArchitectTests:test_simple_compound_architect": {
"log": "",
"state": "passed"
},
"protocols:ConcatenatePosesTests:test_concatenator": {
"log": "",
"state": "passed"
},
"protocols:ConnectRightTests:test_connection": {
"log": "",
"state": "passed"
},
"protocols:ConnectionArchitectTests:test_bridge_connection": {
"log": "",
"state": "passed"
},
"protocols:ConnectionArchitectTests:test_staple_connection": {
"log": "",
"state": "passed"
},
"protocols:ConsensusLoopDesignOperationTests:test_loop_info_and_task_manipulation": {
"log": "",
"state": "passed"
},
"protocols:ConsensusLoopDesignOperationTests:test_read_db": {
"log": "",
"state": "passed"
},
"protocols:ConservativeDesignOperationTests:test_task_op": {
"log": "",
"state": "passed"
},
"protocols:ConstraintGeneratorFactoryTests:test_register_one_creator_twice_with_ConstraintGeneratorFactory": {
"log": "",
"state": "passed"
},
"protocols:ConstraintGeneratorFactoryTests:test_register_one_creator_with_ConstraintGeneratorFactory": {
"log": "",
"state": "passed"
},
"protocols:ConstraintGeneratorFactoryTests:test_throw_on_unregistered_generator_name_ConstraintGeneratorFactory": {
"log": "",
"state": "passed"
},
"protocols:ConstraintScoreCutoffFilterTests:test_it_adds_scores": {
"log": "",
"state": "passed"
},
"protocols:ConstraintsManagerTests:test_pose_cache": {
"log": "",
"state": "passed"
},
"protocols:ConstraintsMetricTests:test_read_and_summarize": {
"log": "",
"state": "passed"
},
"protocols:ContactMapTests:test_apply": {
"log": "",
"state": "passed"
},
"protocols:ContactMapTests:test_contact": {
"log": "",
"state": "passed"
},
"protocols:ContactMapTests:test_contact_partner": {
"log": "",
"state": "passed"
},
"protocols:ContactMapTests:test_fill_contacts": {
"log": "",
"state": "passed"
},
"protocols:ContactMapTests:test_fill_contacts_ligand": {
"log": "",
"state": "passed"
},
"protocols:ContactMapTests:test_fill_two_region": {
"log": "",
"state": "passed"
},
"protocols:ContactMapTests:test_parse_region": {
"log": "",
"state": "passed"
},
"protocols:ContactMapTests:test_parse_tag": {
"log": "",
"state": "passed"
},
"protocols:ContainerMoversTest:test_CycleMover": {
"log": "",
"state": "passed"
},
"protocols:ContainerMoversTest:test_RepeatMover": {
"log": "",
"state": "passed"
},
"protocols:ContainerMoversTest:test_SequenceMover": {
"log": "",
"state": "passed"
},
"protocols:CoordSerializationTests:test_serialization": {
"log": "",
"state": "passed"
},
"protocols:CoordinateConstraintGeneratorTests:test_constraints_allresidues": {
"log": "",
"state": "passed"
},
"protocols:CoordinateConstraintGeneratorTests:test_constraints_subset": {
"log": "",
"state": "passed"
},
"protocols:CoordinateConstraintGeneratorTests:test_input_bounded_default": {
"log": "",
"state": "passed"
},
"protocols:CoordinateConstraintGeneratorTests:test_input_harmonic_default": {
"log": "",
"state": "passed"
},
"protocols:CoordinateConstraintGeneratorTests:test_input_harmonic_sidechain": {
"log": "",
"state": "passed"
},
"protocols:CoordinateConstraintGeneratorTests:test_integration_native": {
"log": "",
"state": "passed"
},
"protocols:CoordinateConstraintGeneratorTests:test_native_harmonic_default": {
"log": "",
"state": "passed"
},
"protocols:CoordinateConstraintGeneratorTests:test_native_harmonic_sidechain": {
"log": "",
"state": "passed"
},
"protocols:CopyRotamerMoverTests:test_copyrotamermover": {
"log": "",
"state": "passed"
},
"protocols:CoreScorerTests:test_corescorer": {
"log": "",
"state": "passed"
},
"protocols:CoupledMovesProtocolTests:test_apply": {
"log": "",
"state": "passed"
},
"protocols:CoupledMovesProtocolTests:test_bad_init": {
"log": "",
"state": "passed"
},
"protocols:CreateSequenceMotifOperationTests:test_task_op": {
"log": "",
"state": "passed"
},
"protocols:CrosslinkerMoverTests:test_tma_dihedral_fxn": {
"log": "",
"state": "passed"
},
"protocols:CstInfoMoverTests:test_it_adds_scores": {
"log": "",
"state": "passed"
},
"protocols:CycpepRigidBodyPermutationMoverTests:test_apply_setting": {
"log": "",
"state": "passed"
},
"protocols:CycpepSymmetryFilterTests:test_c2_symm": {
"log": "",
"state": "passed"
},
"protocols:CycpepSymmetryFilterTests:test_c2m_symm": {
"log": "",
"state": "passed"
},
"protocols:CycpepSymmetryFilterTests:test_c4m_symm": {
"log": "",
"state": "passed"
},
"protocols:DDGBindOptEDataTests:test_get_score": {
"log": "",
"state": "passed"
},
"protocols:DataLoaderTests:test_ConstraintGeneratorLoader": {
"log": "",
"state": "passed"
},
"protocols:DataLoaderTests:test_DataLoaderFactory": {
"log": "",
"state": "passed"
},
"protocols:DataLoaderTests:test_JumpSelectorLoader": {
"log": "",
"state": "passed"
},
"protocols:DataLoaderTests:test_LoopsDefinerLoader": {
"log": "",
"state": "passed"
},
"protocols:DataLoaderTests:test_MonteCarloLoader": {
"log": "",
"state": "passed"
},
"protocols:DataLoaderTests:test_MoveMapBuilderLoader": {
"log": "",
"state": "passed"
},
"protocols:DataLoaderTests:test_MoveMapFactoryLoader": {
"log": "",
"state": "passed"
},
"protocols:DataLoaderTests:test_ResidueSelectorLoader": {
"log": "",
"state": "passed"
},
"protocols:DataLoaderTests:test_ScoreFunctionLoader": {
"log": "",
"state": "passed"
},
"protocols:DataLoaderTests:test_TaskOperationLoader": {
"log": "",
"state": "passed"
},
"protocols:DdGScan:test_calculate": {
"log": "",
"state": "passed"
},
"protocols:DdGScan:test_filter_parsing": {
"log": "",
"state": "passed"
},
"protocols:DdgFilter:test_filter_parsing": {
"log": "",
"state": "passed"
},
"protocols:DdgFilter:test_use_filter": {
"log": "",
"state": "passed"
},
"protocols:DeNovoArchitectTests:test_apply": {
"log": "",
"state": "passed"
},
"protocols:DeNovoArchitectTests:test_cloning": {
"log": "",
"state": "passed"
},
"protocols:DeNovoArchitectTests:test_parse_tag": {
"log": "",
"state": "passed"
},
"protocols:DeNovoMotifArchitectTests:test_apply": {
"log": "",
"state": "passed"
},
"protocols:DeNovoMotifArchitectTests:test_motif_base": {
"log": "",
"state": "passed"
},
"protocols:DeNovoMotifArchitectTests:test_parse_my_tag": {
"log": "",
"state": "passed"
},
"protocols:DesignAroundOperationTests:test_it_doesnt_restrict_for_big_enough_radius": {
"log": "",
"state": "passed"
},
"protocols:DesignAroundOperationTests:test_it_restricts_outside_design_radius": {
"log": "",
"state": "passed"
},
"protocols:DesignAroundOperationTests:test_it_restricts_outside_pack_radius": {
"log": "",
"state": "passed"
},
"protocols:DihedralConstraintGeneratorTests:test_generator": {
"log": "",
"state": "passed"
},
"protocols:DirectSegmentLookupTests:test_read_store": {
"log": "",
"state": "passed"
},
"protocols:DirectSegmentLookupTests:test_simple_mover": {
"log": "",
"state": "passed"
},
"protocols:DirectSegmentLookupTests:test_simple_sample": {
"log": "",
"state": "passed"
},
"protocols:DisulfideInsertionMoverTests:test_apply_function": {
"log": "",
"state": "passed"
},
"protocols:DisulfideInsertionMoverTests:test_cyclization_viability_function": {
"log": "",
"state": "passed"
},
"protocols:DisulfideInsertionMoverTests:test_rosettascripts_options": {
"log": "",
"state": "passed"
},
"protocols:DisulfidizeMoverTests:test_disulfidize": {
"log": "",
"state": "passed"
},
"protocols:DisulfidizeMoverTests:test_find_current_disulfides": {
"log": "",
"state": "passed"
},
"protocols:DisulfidizeMoverTests:test_multiplex": {
"log": "",
"state": "passed"
},
"protocols:DivideAndConquerorTests:test_ntf2": {
"log": "",
"state": "passed"
},
"protocols:DivideAndConquerorTests:test_rossman": {
"log": "",
"state": "passed"
},
"protocols:DockingTest:test_DockingPacking": {
"log": "",
"state": "passed"
},
"protocols:DockingTest:test_DockingProtocolFunctions": {
"log": "",
"state": "passed"
},
"protocols:DockingTest:test_DockingProtocol_clone": {
"log": "",
"state": "passed"
},
"protocols:DockingTest:test_DockingRigidBodyMinimize": {
"log": "",
"state": "passed"
},
"protocols:DockingTest:test_DockingSlideIntoContact": {
"log": "",
"state": "passed"
},
"protocols:DockingTest:test_EllipsoidalRandomizationMover": {
"log": "",
"state": "passed"
},
"protocols:DsspDesignOperationTests:test_DsspDesignOperation": {
"log": "",
"state": "passed"
},
"protocols:DsspDesignOperationTests:test_copy_constructor": {
"log": "",
"state": "passed"
},
"protocols:DsspDesignOperationTests:test_get_restrictions": {
"log": "",
"state": "passed"
},
"protocols:DsspDesignOperationTests:test_set_restrictions_aa": {
"log": "",
"state": "passed"
},
"protocols:DsspDesignOperationTests:test_set_restrictions_append": {
"log": "",
"state": "passed"
},
"protocols:DsspDesignOperationTests:test_set_restrictions_exclude": {
"log": "",
"state": "passed"
},
"protocols:DsspDisulfideLabelerMoverTests:test_DSSPDisulfideLabelerMover": {
"log": "",
"state": "passed"
},
"protocols:DsspTests:test_dssp": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_EntityFunc_AA_SET_command": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_EntityFunc_AA_SET_command_missing_commas": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_EntityFunc_AA_SET_command_missing_equals_sign": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_EntityFunc_AA_SET_command_missing_right_curly_brace": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_EntityFunc_SET_CONDITION_command_from_AA_SET": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_EntityFunc_SET_CONDITION_command_from_AA_SET_bad_name": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_EntityFunc_SET_CONDITION_command_from_aa_list": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_EntityFunc_SET_CONDITION_command_from_aa_list_missing_comma": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_EntityFunc_SET_CONDITION_command_from_aa_list_missing_lcurly": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_EntityFunc_SUB_EXPRESSION_command": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_EntityFunc_read_simple_file": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_POSE_ENERGY_command": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_POSE_ENERGY_into_VECTOR_VARIABLE_command": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_STATE_VECTOR_command": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_STATE_VECTOR_command_duplicate_varname": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_STATE_VECTOR_command_function_varname": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_STATE_VECTOR_command_illegal_varname": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_STATE_VECTOR_command_missing_listfile": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_STATE_VECTOR_command_missing_listfile2": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_STATE_VECTOR_command_missing_varname": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_STATE_VECTOR_command_missing_varname2": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_STATE_command": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_STATE_command_missing_correspondence_file": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_STATE_command_missing_correspondence_file2": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_STATE_command_missing_pdb_file": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_STATE_command_missing_pdb_file2": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_STATE_command_missing_secondary_resfile": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_STATE_command_missing_secondary_resfile2": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_STATE_command_varname_duplicated": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_STATE_command_varname_function_name": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_STATE_command_varname_illegal_name": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_VECTOR_EXPRESSION_command": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_VECTOR_EXPRESSION_command_duplicated_local_varname": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_VECTOR_EXPRESSION_command_nocap_IN": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_VECTOR_EXPRESSION_command_two_local_variables": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_VECTOR_EXPRESSION_command_two_local_variables_misplaced_comma": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_VECTOR_VARIABLE_command": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_VECTOR_VARIABLE_command_bad_varname": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_VECTOR_VARIABLE_command_bad_vecvarname": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_VECTOR_VARIABLE_command_func_vecvarname": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_mean_of_vector_variable_command": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_scalar_NPD_PROPERTY_command": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_daf_vector_NPD_PROPERTY_command": {
"log": "",
"state": "passed"
},
"protocols:DynamicAggregateFunctionTests:test_initialize_empty_DAF": {
"log": "",
"state": "passed"
},
"protocols:EmbeddingDefTest:test_default_constructor": {
"log": "",
"state": "passed"
},
"protocols:EmbeddingDefTest:test_equals": {
"log": "",
"state": "passed"
},
"protocols:EmbeddingDefTest:test_from_span": {
"log": "",
"state": "passed"
},
"protocols:EmbeddingDefTest:test_standard_constructor": {
"log": "",
"state": "passed"
},
"protocols:EmbeddingDefTest:test_translate_by": {
"log": "",
"state": "passed"
},
"protocols:EmbeddingTest:test_constructor_from_topo_and_pose": {
"log": "",
"state": "passed"
},
"protocols:EmbeddingTest:test_constructor_from_topo_and_radius": {
"log": "",
"state": "passed"
},
"protocols:EnergyBasedClusteringTests:test_determine_ABOXYZ_bin": {
"log": "",
"state": "passed"
},
"protocols:EnergyBasedClusteringTests:test_get_circular_permutation_first_in_alphabetical_order": {
"log": "",
"state": "passed"
},
"protocols:EnergyBasedClusteringTests:test_num_asymmetric_binstrings": {
"log": "",
"state": "passed"
},
"protocols:EnergyBasedClusteringTests:test_num_asymmetric_binstrings_with_mirror_counterpart_represented": {
"log": "",
"state": "passed"
},
"protocols:EnergyBasedClusteringTests:test_permute_string": {
"log": "",
"state": "passed"
},
"protocols:EnergyBasedClusteringTests:test_storeposedata": {
"log": "",
"state": "passed"
},
"protocols:EnergyBasedClusteringTests_alpha_aa:test_cartesian_cluster_cyclic_alpha_aa": {
"log": "",
"state": "passed"
},
"protocols:EnergyBasedClusteringTests_alpha_aa:test_dihedral_cluster_cyclic_alpha_aa": {
"log": "",
"state": "passed"
},
"protocols:EnergyBasedClusteringTests_oligourea:test_cartesian_cluster_cyclic_oligourea": {
"log": "",
"state": "passed"
},
"protocols:EnergyBasedClusteringTests_oligourea:test_cartesian_cluster_cyclic_oligourea_s2_symm": {
"log": "",
"state": "passed"
},
"protocols:EnergyBasedClusteringTests_oligourea:test_dihedral_cluster_cyclic_oligourea": {
"log": "",
"state": "passed"
},
"protocols:EnergyJobSummaryTests:test_basic_energy_job_summary": {
"log": "",
"state": "passed"
},
"protocols:EnsureExclusivelySharedJumpMoverTests:test_custom_foldtree1": {
"log": "",
"state": "passed"
},
"protocols:EnsureExclusivelySharedJumpMoverTests:test_custom_foldtree2": {
"log": "",
"state": "passed"
},
"protocols:EnsureExclusivelySharedJumpMoverTests:test_custom_foldtree3": {
"log": "",
"state": "passed"
},
"protocols:EnsureExclusivelySharedJumpMoverTests:test_custom_foldtree4": {
"log": "",
"state": "passed"
},
"protocols:EnsureExclusivelySharedJumpMoverTests:test_custom_foldtree5": {
"log": "",
"state": "passed"
},
"protocols:EnsureExclusivelySharedJumpMoverTests:test_simple": {
"log": "",
"state": "passed"
},
"protocols:EnsureExclusivelySharedJumpMoverTests:test_simple_six_chains": {
"log": "",
"state": "passed"
},
"protocols:EnsureExclusivelySharedJumpMoverTests:test_simple_two_chain1": {
"log": "",
"state": "passed"
},
"protocols:EnsureExclusivelySharedJumpMoverTests:test_simple_two_chain2": {
"log": "",
"state": "passed"
},
"protocols:EnsureExclusivelySharedJumpMoverTests:test_simple_two_chain3": {
"log": "",
"state": "passed"
},
"protocols:EnsureExclusivelySharedJumpMoverTests:test_simple_two_chain4": {
"log": "",
"state": "passed"
},
"protocols:EntityCorrespondenceTests:test_correspondence_bad_instream_entity_range": {
"log": "",
"state": "passed"
},
"protocols:EntityCorrespondenceTests:test_correspondence_bad_instream_entity_type": {
"log": "",
"state": "passed"
},
"protocols:EntityCorrespondenceTests:test_correspondence_bad_instream_resid_type": {
"log": "",
"state": "passed"
},
"protocols:EntityCorrespondenceTests:test_correspondence_bad_instream_residue_range": {
"log": "",
"state": "passed"
},
"protocols:EntityCorrespondenceTests:test_correspondence_entity_index_out_of_bounds": {
"log": "",
"state": "passed"
},
"protocols:EntityCorrespondenceTests:test_correspondence_from_instream": {
"log": "",
"state": "passed"
},
"protocols:EntityCorrespondenceTests:test_correspondence_from_instream_ignoring_comments": {
"log": "",
"state": "passed"
},
"protocols:EntityCorrespondenceTests:test_correspondence_residue_index_out_of_bounds": {
"log": "",
"state": "passed"
},
"protocols:EntityCorrespondenceTests:test_entity_correspondence_ctor": {
"log": "",
"state": "passed"
},
"protocols:EntityTests:test_DummyElement_ctor": {
"log": "",
"state": "passed"
},
"protocols:EntityTests:test_Entity_assignment_operator": {
"log": "",
"state": "passed"
},
"protocols:EntityTests:test_Entity_copy_constructor": {
"log": "",
"state": "passed"
},
"protocols:EntityTests:test_Entity_equality": {
"log": "",
"state": "passed"
},
"protocols:EntityTests:test_Entity_fitness_lt_logic": {
"log": "",
"state": "passed"
},
"protocols:EntityTests:test_Entity_fitness_valid_logic": {
"log": "",
"state": "passed"
},
"protocols:EntityTests:test_Entity_from_string": {
"log": "",
"state": "passed"
},
"protocols:EntityTests:test_Entity_output": {
"log": "",
"state": "passed"
},
"protocols:EntityTests:test_Entity_with_dummy_elements": {
"log": "",
"state": "passed"
},
"protocols:EnvironmentJump:test_cache_persistence": {
"log": "",
"state": "passed"
},
"protocols:EnvironmentJump:test_cut_inheritance": {
"log": "",
"state": "passed"
},
"protocols:EnvironmentJump:test_jump_moves": {
"log": "",
"state": "passed"
},
"protocols:EnvironmentJump:test_pdb_info_persistence": {
"log": "",
"state": "passed"
},
"protocols:EnvironmentTorsion:test_dual_environment": {
"log": "",
"state": "passed"
},
"protocols:EnvironmentTorsion:test_empty_environment": {
"log": "",
"state": "passed"
},
"protocols:EnvironmentTorsion:test_single_phi_moves": {
"log": "",
"state": "passed"
},
"protocols:EnvironmentTorsion:test_torsion_can_exclusive_compatibility": {
"log": "",
"state": "passed"
},
"protocols:EnvironmentTorsion:test_torsion_init": {
"log": "",
"state": "passed"
},
"protocols:EnvironmentTorsion:test_torsion_must_can_coexist": {
"log": "",
"state": "passed"
},
"protocols:EnvironmentTorsion:test_torsion_must_exclusive_incompatibility": {
"log": "",
"state": "passed"
},
"protocols:EnzScoreFilterTests:test_auto_enzdes_csts": {
"log": "",
"state": "passed"
},
"protocols:EnzScoreFilterTests:test_resnum_enzdes_csts": {
"log": "",
"state": "passed"
},
"protocols:EnzScoreFilterTests:test_whole_pose_enzdes_csts": {
"log": "",
"state": "passed"
},
"protocols:EnzdesTaskOperations_Tests:test_ProteinLigandInterfaceUpweighter_gettersetter": {
"log": "",
"state": "passed"
},
"protocols:ExtendChainMoverTests:test_append": {
"log": "",
"state": "passed"
},
"protocols:ExtendChainMoverTests:test_input": {
"log": "",
"state": "passed"
},
"protocols:ExtendChainMoverTests:test_prepend": {
"log": "",
"state": "passed"
},
"protocols:ExtendedPoseBuilderTests:test_add_chain_from_segment": {
"log": "",
"state": "passed"
},
"protocols:ExtendedPoseBuilderTests:test_bridgechains_add_template_segment_functions": {
"log": "",
"state": "passed"
},
"protocols:ExtendedPoseBuilderTests:test_bridgechains_case": {
"log": "",
"state": "passed"
},
"protocols:ExtendedPoseBuilderTests:test_build_complicated": {
"log": "",
"state": "passed"
},
"protocols:ExtendedPoseBuilderTests:test_build_copy_multi_chain": {
"log": "",
"state": "passed"
},
"protocols:ExtendedPoseBuilderTests:test_build_copy_simple": {
"log": "",
"state": "passed"
},
"protocols:ExtendedPoseBuilderTests:test_build_pose_simple": {
"log": "",
"state": "passed"
},
"protocols:ExtendedPoseBuilderTests:test_build_pose_with_lower_template": {
"log": "",
"state": "passed"
},
"protocols:ExtendedPoseBuilderTests:test_build_pose_with_middle_template": {
"log": "",
"state": "passed"
},
"protocols:ExtendedPoseBuilderTests:test_build_pose_with_middle_template_and_cut": {
"log": "",
"state": "passed"
},
"protocols:ExtendedPoseBuilderTests:test_build_pose_with_upper_template": {
"log": "",
"state": "passed"
},
"protocols:ExtendedPoseBuilderTests:test_gerard_case": {
"log": "",
"state": "passed"
},
"protocols:ExtendedPoseBuilderTests:test_propeller_case": {
"log": "",
"state": "passed"
},
"protocols:ExternalGeomSamplerTests:test_external_geom_sampler_transforms": {
"log": "",
"state": "passed"
},
"protocols:ExternalGeomSamplerTests:test_sampler_ctor": {
"log": "",
"state": "passed"
},
"protocols:ExternalGeomSamplerTests:test_sampler_initialization": {
"log": "",
"state": "passed"
},
"protocols:ExtraThreadingMover_Tests:test_basic_threading": {
"log": "",
"state": "passed"
},
"protocols:FAVirtMoverTests:test_fa_to_virt": {
"log": "",
"state": "passed"
},
"protocols:FAVirtMoverTests:test_virt_scoring": {
"log": "",
"state": "passed"
},
"protocols:FAVirtMoverTests:test_virt_to_fa": {
"log": "",
"state": "passed"
},
"protocols:FastRelaxTests:test_beta_custom_script": {
"log": "",
"state": "passed"
},
"protocols:FastRelaxTests:test_fastrelax_B3N": {
"log": "",
"state": "passed"
},
"protocols:FastRelaxTests:test_fastrelax_B3N_mod_termini": {
"log": "",
"state": "passed"
},
"protocols:FastRelaxTests:test_legacy_dualspace_script": {
"log": "",
"state": "passed"
},
"protocols:FastRelaxTests:test_legacy_script": {
"log": "",
"state": "passed"
},
"protocols:FastRelaxTests:test_local_script": {
"log": "",
"state": "passed"
},
"protocols:FastRelaxTests:test_nonexistent_local_script": {
"log": "",
"state": "passed"
},
"protocols:FavorSequenceProfileTests:test_global_scaling": {
"log": "",
"state": "passed"
},
"protocols:FavorSequenceProfileTests:test_no_scaling": {
"log": "",
"state": "passed"
},
"protocols:FavorSequenceProfileTests:test_use_BLOSUM62": {
"log": "",
"state": "passed"
},
"protocols:FavorSequenceProfileTests:test_use_IDENTITY": {
"log": "",
"state": "passed"
},
"protocols:FavorSequenceProfileTests:test_use_PSSM": {
"log": "",
"state": "passed"
},
"protocols:FavorSequenceProfileTests:test_use_weight": {
"log": "",
"state": "passed"
},
"protocols:FeaturesReporterTests:test_identifier_generation": {
"log": "",
"state": "passed"
},
"protocols:FeaturesReporterTests:test_main": {
"log": "",
"state": "passed"
},
"protocols:FeaturesReporterTests:test_trajectory_report_to_db": {
"log": "",
"state": "passed"
},
"protocols:FilterFactoryTests:test_FilterFactory_all_Filter_all_attributes_have_descriptions": {
"log": "",
"state": "passed"
},
"protocols:FilterFactoryTests:test_FilterFactory_all_Filter_complexTypes_have_descriptions": {
"log": "",
"state": "passed"
},
"protocols:FilterFactoryTests:test_all_filters_define_valid_xsds": {
"log": "",
"state": "passed"
},
"protocols:FilterFactoryTests:test_confidence_usage": {
"log": "",
"state": "passed"
},
"protocols:FilterReportAsPoseExtraScoresMoverTests:test_FilterReportAsPoseExtraScoresMover": {
"log": "",
"state": "passed"
},
"protocols:FilterValueMetricTests:test_constructor": {
"log": "",
"state": "passed"
},
"protocols:FindConsensusSequenceTest:test_consensus_sequence": {
"log": "",
"state": "passed"
},
"protocols:FindConsensusSequenceTest:test_resfile_parsing": {
"log": "",
"state": "passed"
},
"protocols:FitnessFilterTest:test_FitnessFilter": {
"log": "",
"state": "passed"
},
"protocols:FlipChiralityMover:test_mirrored": {
"log": "",
"state": "passed"
},
"protocols:FlipChiralityMover:test_name_change": {
"log": "",
"state": "passed"
},
"protocols:FlipChiralityMover:test_size_range": {
"log": "",
"state": "passed"
},
"protocols:FlipMoverTest:test_constructor_from_jumpnum": {
"log": "",
"state": "passed"
},
"protocols:FlipMoverTest:test_constructor_from_jumpnum_and_angle": {
"log": "",
"state": "passed"
},
"protocols:FlipMoverTest:test_constructor_from_jumpnum_and_angle_mem": {
"log": "",
"state": "passed"
},
"protocols:FlipMoverTest:test_constructor_from_jumpnum_and_axis": {
"log": "",
"state": "passed"
},
"protocols:FlipMoverTest:test_constructor_from_jumpnum_and_axis_mem": {
"log": "",
"state": "passed"
},
"protocols:FlipMoverTest:test_constructor_from_jumpnum_axis_angle": {
"log": "",
"state": "passed"
},
"protocols:FlipMoverTest:test_constructor_from_jumpnum_axis_angle_mem": {
"log": "",
"state": "passed"
},
"protocols:FlipMoverTest:test_constructor_from_jumpnum_mem": {
"log": "",
"state": "passed"
},
"protocols:FlipMoverTest:test_default_constructor": {
"log": "",
"state": "passed"
},
"protocols:FlipMoverTest:test_flipmover_parse_my_tag_input": {
"log": "",
"state": "passed"
},
"protocols:FoldArchitectMoverTests:test_design": {
"log": "",
"state": "passed"
},
"protocols:FoldArchitectMoverTests:test_symmetry": {
"log": "",
"state": "passed"
},
"protocols:FoldGraphTests:test_create_fold_tree": {
"log": "",
"state": "passed"
},
"protocols:FoldGraphTests:test_create_loops": {
"log": "",
"state": "passed"
},
"protocols:FoldGraphTests:test_fold_tree_with_cutpoint": {
"log": "",
"state": "passed"
},
"protocols:FoldGraphTests:test_simple_fold_tree": {
"log": "",
"state": "passed"
},
"protocols:FoldTreeFromMotifTests:test_fold_tree_from_loops": {
"log": "",
"state": "passed"
},
"protocols:ForceDisulfidesMoverTests:test_keep_existing": {
"log": "",
"state": "passed"
},
"protocols:ForceDisulfidesMoverTests:test_original": {
"log": "",
"state": "passed"
},
"protocols:ForceDisulfidesMoverTests:test_parse": {
"log": "",
"state": "passed"
},
"protocols:ForceDisulfidesMoverTests:test_rearrange": {
"log": "",
"state": "passed"
},
"protocols:ForceDisulfidesMoverTests:test_remove_existing": {
"log": "",
"state": "passed"
},
"protocols:FragmentCMTest:test_fragment_insertion": {
"log": "",
"state": "passed"
},
"protocols:FragmentCMTest:test_xml": {
"log": "",
"state": "passed"
},
"protocols:FragmentCandidatesTests:test_DiversifyCrmsdByClustering": {
"log": "",
"state": "passed"
},
"protocols:FragmentCandidatesTests:test_DiversifyCrmsdSelector": {
"log": "",
"state": "passed"
},
"protocols:FragmentCandidatesTests:test_DiversifyDihedralsSelector": {
"log": "",
"state": "passed"
},
"protocols:FragmentCandidatesTests:test_read_vall2": {
"log": "",
"state": "passed"
},
"protocols:FragmentCandidatesTests:test_read_vall_fragments": {
"log": "",
"state": "passed"
},
"protocols:FragmentLookupTests:test_binary_store": {
"log": "",
"state": "passed"
},
"protocols:FragmentLookupTests:test_read_store": {
"log": "",
"state": "passed"
},
"protocols:FragmentMoverTest:test_mover": {
"log": "",
"state": "passed"
},
"protocols:FragmentMoverTest:test_proposed_ss": {
"log": "",
"state": "passed"
},
"protocols:FragmentMoverTest:test_ss_check": {
"log": "",
"state": "passed"
},
"protocols:FragmentMoverTest:test_steal": {
"log": "",
"state": "passed"
},
"protocols:FragmentMoverTest:test_window_start": {
"log": "",
"state": "passed"
},
"protocols:GeneralizedKIC_Tests:test_GeneralizedKIC_L_alpha_backbone": {
"log": "",
"state": "passed"
},
"protocols:GeneralizedKIC_Tests:test_GeneralizedKIC_L_alpha_backbone_lowmem": {
"log": "",
"state": "passed"
},
"protocols:GeneralizedKIC_Tests:test_GeneralizedKIC_mixed_DL_alpha_backbone": {
"log": "",
"state": "passed"
},
"protocols:GeneralizedKIC_Tests_ramaprepro:test_GeneralizedKIC_ramaprepro_perturbation_canonical": {
"log": "",
"state": "passed"
},
"protocols:GeneralizedKIC_Tests_ramaprepro:test_GeneralizedKIC_ramaprepro_perturbation_canonical_D": {
"log": "",
"state": "passed"
},
"protocols:GeneralizedKIC_Tests_ramaprepro:test_GeneralizedKIC_ramaprepro_perturbation_canonical_D_beforepro": {
"log": "",
"state": "passed"
},
"protocols:GeneralizedKIC_Tests_ramaprepro:test_GeneralizedKIC_ramaprepro_perturbation_canonical_beforepro": {
"log": "",
"state": "passed"
},
"protocols:GeneralizedKIC_Tests_ramaprepro_NCAA:test_GeneralizedKIC_ramaprepro_perturbation_noncanonical": {
"log": "",
"state": "passed"
},
"protocols:GeneralizedKIC_Tests_ramaprepro_NCAA:test_GeneralizedKIC_ramaprepro_perturbation_noncanonical_D": {
"log": "",
"state": "passed"
},
"protocols:GeneralizedKIC_Tests_ramaprepro_NCAA:test_GeneralizedKIC_ramaprepro_perturbation_noncanonical_D_beforepro": {
"log": "",
"state": "passed"
},
"protocols:GeneralizedKIC_Tests_ramaprepro_NCAA:test_GeneralizedKIC_ramaprepro_perturbation_noncanonical_beforepro": {
"log": "",
"state": "passed"
},
"protocols:GenerateMainchainPotentialTests:test_full_run_ALA": {
"log": "",
"state": "passed"
},
"protocols:GenerateMainchainPotentialTests:test_full_run_B3N": {
"log": "",
"state": "passed"
},
"protocols:GenerateMainchainPotentialTests:test_full_run_GLY_asymm": {
"log": "",
"state": "passed"
},
"protocols:GenerateMainchainPotentialTests:test_full_run_GLY_symm": {
"log": "",
"state": "passed"
},
"protocols:GenerateMainchainPotentialTests:test_full_run_VAL": {
"log": "",
"state": "passed"
},
"protocols:GenerateMainchainPotentialTests:test_full_run_VAL_prepro": {
"log": "",
"state": "passed"
},
"protocols:GenerateMainchainPotentialTests:test_pose_generation": {
"log": "",
"state": "passed"
},
"protocols:GenerateMainchainPotentialTests:test_pose_generation_prepro": {
"log": "",
"state": "passed"
},
"protocols:GenericSimulatedAnnealerTests:test_acceptance": {
"log": "",
"state": "passed"
},
"protocols:GenericSimulatedAnnealerTests:test_boltzmann": {
"log": "",
"state": "passed"
},
"protocols:GenericSimulatedAnnealerTests:test_checkpointing": {
"log": "",
"state": "passed"
},
"protocols:GlycosyltransferaseMoverTests:test_apply": {
"log": "",
"state": "passed"
},
"protocols:GraftSwitchMoverTests:test_graft_switch_mover_setup": {
"log": "",
"state": "passed"
},
"protocols:GraftingTest:test_graft_classes": {
"log": "",
"state": "passed"
},
"protocols:GraftingTest:test_utility_functions": {
"log": "",
"state": "passed"
},
"protocols:GreedyOptMutationMoverTests:test_GreedyOptMutationMover_ultrasimple": {
"log": "",
"state": "passed"
},
"protocols:GreenPackerTests:test_GreenPacker_ultrasimple": {
"log": "",
"state": "passed"
},
"protocols:GrowLeftTests:test_n_side_internal": {
"log": "",
"state": "passed"
},
"protocols:GrowLeftTests:test_n_term_extension": {
"log": "",
"state": "passed"
},
"protocols:GrowRightTests:test_c_side_internal": {
"log": "",
"state": "passed"
},
"protocols:GrowRightTests:test_c_term_extension": {
"log": "",
"state": "passed"
},
"protocols:GunnCostTest:test_cost": {
"log": "",
"state": "passed"
},
"protocols:HBNetMoverTests:test_hbnet_mover_setup": {
"log": "",
"state": "passed"
},
"protocols:HBPHelixAssignmentsTests:test_init_from_file": {
"log": "",
"state": "passed"
},
"protocols:HBondCalculatorsTest:test_hb_calculators": {
"log": "",
"state": "passed"
},
"protocols:HBondSelectorTests:test_HBondSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"protocols:HasDisulfideFilterTests:test_hasDisulfideFilter": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_HitNeighborFinder_find_connected_components_1": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_HitNeighborFinder_find_connected_components_2": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_HitNeighborFinder_find_connected_components_3": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_HitNeighborFinder_find_connected_components_4": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_MatchCounter_three_geomcsts_expect_eight_matches": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_MatchCounter_three_geomcsts_expect_four_matches": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_MatchCounter_three_geomcsts_expect_one_match": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_MatchCounter_three_geomcsts_expect_zero_matches": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_MatchCounter_two_geomcsts_expect_one_match": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_SixDCoordinateBinner_halfbin_index_euclid_offset": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_SixDCoordinateBinner_halfbin_index_euler_offset": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_SixDCoordinateBinner_halfbin_index_euler_phi_psi_offset": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_SixDCoordinateBinner_halfbin_index_no_offset": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_SixDCoordinateBinner_halfbin_index_theta_offset_euclid_offset": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_SixDCoordinateBinner_offset_phi": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_SixDCoordinateBinner_offset_psi": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_SixDCoordinateBinner_offset_theta": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_SixDCoordinateBinner_wrap_theta": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_SixDCoordinateBinner_wrap_theta2": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_SixDCoordinateBinner_wrap_theta_and_phi": {
"log": "",
"state": "passed"
},
"protocols:HasherTests:test_boost_unordered_map": {
"log": "",
"state": "passed"
},
"protocols:HelicalBundlePDBInfoTests:test_pdbinfo_on_append": {
"log": "",
"state": "passed"
},
"protocols:HelixPairingFilterTests:test_pose_without_helices": {
"log": "",
"state": "passed"
},
"protocols:HelixPairingFilterTests:test_two_helix": {
"log": "",
"state": "passed"
},
"protocols:HighResEnsembleTests:test_spearman": {
"log": "",
"state": "passed"
},
"protocols:HighResEnsembleTests:test_vector_to_rank": {
"log": "",
"state": "passed"
},
"protocols:HotspotHashingTests:test_lsmsearchpattern": {
"log": "",
"state": "passed"
},
"protocols:HotspotHashingTests:test_placeresidueattransform": {
"log": "",
"state": "passed"
},
"protocols:HotspotHashingTests:test_placeresidueattransform_blankpose": {
"log": "",
"state": "passed"
},
"protocols:HotspotHashingTests:test_sicsearchpattern": {
"log": "",
"state": "passed"
},
"protocols:HotspotHashingTests:test_stubcentroid_transform": {
"log": "",
"state": "passed"
},
"protocols:HotspotHashingTests:test_stuborient_transform": {
"log": "",
"state": "passed"
},
"protocols:HotspotHashingTests:test_surfacesearchpattern_generation": {
"log": "",
"state": "passed"
},
"protocols:HybridizeProtocolTests:test_disulf_file_getter_setter": {
"log": "",
"state": "passed"
},
"protocols:HydrogenBondConstraintGeneratorTests:test_atoms": {
"log": "",
"state": "passed"
},
"protocols:HydrogenBondConstraintGeneratorTests:test_complicated": {
"log": "",
"state": "passed"
},
"protocols:HydrogenBondConstraintGeneratorTests:test_constraints_allresidues": {
"log": "",
"state": "passed"
},
"protocols:HydrogenBondConstraintGeneratorTests:test_constraints_hydrophobics": {
"log": "",
"state": "passed"
},
"protocols:IfThenFilterTests:test_elseonly": {
"log": "",
"state": "passed"
},
"protocols:IfThenFilterTests:test_floor": {
"log": "",
"state": "passed"
},
"protocols:IfThenFilterTests:test_invert": {
"log": "",
"state": "passed"
},
"protocols:IfThenFilterTests:test_multi": {
"log": "",
"state": "passed"
},
"protocols:IfThenFilterTests:test_oneif": {
"log": "",
"state": "passed"
},
"protocols:IfThenFilterTests:test_parse_invertweights": {
"log": "",
"state": "passed"
},
"protocols:IfThenFilterTests:test_parsing": {
"log": "",
"state": "passed"
},
"protocols:IfThenFilterTests:test_weights": {
"log": "",
"state": "passed"
},
"protocols:InteractionGraphSummaryMetricTests:test_summary_from_trpcage_repack": {
"log": "",
"state": "passed"
},
"protocols:InterchainEnvEnergy:test_InterchainEnvEnergyTest": {
"log": "",
"state": "passed"
},
"protocols:InterchainEnvEnergy:test_OneChainEnvEnergyTest": {
"log": "",
"state": "passed"
},
"protocols:InterchainPairEnergy:test_InterchainPairEnergyTest": {
"log": "",
"state": "passed"
},
"protocols:InterchainPairEnergy:test_OneChainPairEnergyTest": {
"log": "",
"state": "passed"
},
"protocols:InterfaceBuilderLoaderTests:test_scoring_grid_loader_defines_valid_xsd": {
"log": "",
"state": "passed"
},
"protocols:InterfaceDdGMoverTests:test_8mer_unbind_by_single_chain_id": {
"log": "",
"state": "passed"
},
"protocols:InterfaceDdGMoverTests:test_dimer_unbind_chain1": {
"log": "",
"state": "passed"
},
"protocols:InterfaceDdGMoverTests:test_dimer_unbind_chain2": {
"log": "",
"state": "passed"
},
"protocols:InterfaceDdGMoverTests:test_dimer_unbind_chain3": {
"log": "",
"state": "passed"
},
"protocols:InterfaceDdGMoverTests:test_dimer_unbind_chainA": {
"log": "",
"state": "passed"
},
"protocols:InterfaceDdGMoverTests:test_dimer_unbind_chainB": {
"log": "",
"state": "passed"
},
"protocols:InterfaceDdGMoverTests:test_dimer_unbind_chainC": {
"log": "",
"state": "passed"
},
"protocols:InterfaceDdGMoverTests:test_dimer_unbind_jump1": {
"log": "",
"state": "passed"
},
"protocols:InterfaceDdGMoverTests:test_dimer_unbind_jump2": {
"log": "",
"state": "passed"
},
"protocols:InterfaceDdGMoverTests:test_mut_pose_setter_and_getter": {
"log": "",
"state": "passed"
},
"protocols:InterfaceDdGMoverTests:test_mutation_list": {
"log": "",
"state": "passed"
},
"protocols:InterfaceDdGMoverTests:test_parse_my_tag": {
"log": "",
"state": "passed"
},
"protocols:InterfaceDdGMoverTests:test_uninitialized": {
"log": "",
"state": "passed"
},
"protocols:InterfaceDdGMoverTests:test_wt_pose_setter_and_getter": {
"log": "",
"state": "passed"
},
"protocols:InterfaceFeaturesTests:test_reporter": {
"log": "",
"state": "passed"
},
"protocols:InterfaceHbondsFilterTests:test_InterfaceHbondsFilter": {
"log": "",
"state": "passed"
},
"protocols:InterfaceHydrophobicResidueContactsFilterTests:test_InterfaceHydrophobicResidueContactsFilter_from_constructor_not_defaults": {
"log": "",
"state": "passed"
},
"protocols:InterfaceHydrophobicResidueContactsFilterTests:test_InterfaceHydrophobicResidueContactsFilter_from_xml_defaults": {
"log": "",
"state": "passed"
},
"protocols:InterfaceHydrophobicResidueContactsFilterTests:test_InterfaceHydrophobicResidueContactsFilter_from_xml_not_defaults": {
"log": "",
"state": "passed"
},
"protocols:InterfaceInfoTests:test_InterfaceInfoTest": {
"log": "",
"state": "passed"
},
"protocols:InterfaceInfoTests:test_OneChainInterfaceInfoTest": {
"log": "",
"state": "passed"
},
"protocols:InterfaceTest:test_InterfaceTest": {
"log": "",
"state": "passed"
},
"protocols:InterfaceTest:test_OneChainInterfaceTest": {
"log": "",
"state": "passed"
},
"protocols:InvrotTreeTest:test_invrot_tree": {
"log": "",
"state": "passed"
},
"protocols:JD3NodeManagersTests:test_node_manager": {
"log": "",
"state": "passed"
},
"protocols:JD3NodeManagersTests:test_segregated_node_manager": {
"log": "",
"state": "passed"
},
"protocols:JD3NodeManagersTests:test_simple1": {
"log": "",
"state": "passed"
},
"protocols:JD3NodeManagersTests:test_single_node_manager_simple": {
"log": "",
"state": "passed"
},
"protocols:JD3NodeManagersTests:test_stop_early": {
"log": "",
"state": "passed"
},
"protocols:JD3NodeManagersTests:test_storage_matric_breadth_first": {
"log": "",
"state": "passed"
},
"protocols:JD3NodeManagersTests:test_storage_matric_breadth_first2": {
"log": "",
"state": "passed"
},
"protocols:JD3NodeManagersTests:test_storage_matric_depth_first": {
"log": "",
"state": "passed"
},
"protocols:JD3NodeManagersTests:test_tokens": {
"log": "",
"state": "passed"
},
"protocols:JD3PDBPoseInputterTests:test_read_input_sources_from_listfile_attribute_in_tag": {
"log": "",
"state": "passed"
},
"protocols:JD3PDBPoseInputterTests:test_read_input_sources_from_listfile_attribute_in_tag_w_path": {
"log": "",
"state": "passed"
},
"protocols:JD3PDBPoseInputterTests:test_read_l_flag_four_pdbs": {
"log": "",
"state": "passed"
},
"protocols:JD3PDBPoseInputterTests:test_read_s_flag_one_pdb": {
"log": "",
"state": "passed"
},
"protocols:JD3PDBPoseInputterTests:test_read_s_flag_three_pdbs": {
"log": "",
"state": "passed"
},
"protocols:JacobiLoopClosureMoverTests:test_JacobiLoopClosureMover_copy_ctor": {
"log": "",
"state": "passed"
},
"protocols:JacobiLoopClosureMoverTests:test_JacobiLoopClosureMover_mover_factory": {
"log": "",
"state": "passed"
},
"protocols:JacobiLoopClosureMoverTests:test_default_constructor": {
"log": "",
"state": "passed"
},
"protocols:JacobiLoopClosureMoverTests:test_loop_reconstruction": {
"log": "",
"state": "passed"
},
"protocols:JacobiLoopClosureMoverTests:test_loop_refinement_basic": {
"log": "",
"state": "passed"
},
"protocols:JacobiLoopClosureMoverTests:test_loop_refinement_cut_middle": {
"log": "",
"state": "passed"
},
"protocols:JacobiLoopClosureMoverTests:test_loop_refinement_inverted": {
"log": "",
"state": "passed"
},
"protocols:JacobiLoopClosureMoverTests:test_loop_with_bad_foldtree": {
"log": "",
"state": "passed"
},
"protocols:JacobiLoopClosureMoverTests:test_loop_without_cut": {
"log": "",
"state": "passed"
},
"protocols:JobGenealogistTests:test_garbage_collection1": {
"log": "",
"state": "passed"
},
"protocols:JobGenealogistTests:test_garbage_collection2": {
"log": "",
"state": "passed"
},
"protocols:JobGenealogistTests:test_garbage_collection_with_multiple_results1": {
"log": "",
"state": "passed"
},
"protocols:JobGenealogistTests:test_garbage_collection_with_multiple_results2": {
"log": "",
"state": "passed"
},
"protocols:JobGenealogistTests:test_job_genealogist2_no_results_for_node1": {
"log": "",
"state": "passed"
},
"protocols:JobGenealogistTests:test_job_genealogist2_one_result_for_node1": {
"log": "",
"state": "passed"
},
"protocols:JobGenealogistTests:test_job_genealogist2_simple_test1": {
"log": "",
"state": "passed"
},
"protocols:JobGenealogistTests:test_multiple_parents": {
"log": "",
"state": "passed"
},
"protocols:JobGenealogistTests:test_newick_tree": {
"log": "",
"state": "passed"
},
"protocols:JobOutputterTests:test_HOSTNAME_in_jobname": {
"log": "",
"state": "passed"
},
"protocols:JobOutputterTests:test_Observer_add_remove": {
"log": "",
"state": "passed"
},
"protocols:Json_based_cdr_detection_tests:test_cdr_regions_detection": {
"log": "",
"state": "passed"
},
"protocols:JumpingTest:test_SheetBuilder": {
"log": "",
"state": "passed"
},
"protocols:JumpingTest:test_jump_geometry": {
"log": "",
"state": "passed"
},
"protocols:JumpingTest:test_rt_library": {
"log": "",
"state": "passed"
},
"protocols:JumpingTest:test_save_and_restore_silentio_with_jumps": {
"log": "",
"state": "passed"
},
"protocols:JumpingTest:test_strand_fraction": {
"log": "",
"state": "passed"
},
"protocols:LabelPoseFromResidueSelectorMoverTests:test_label": {
"log": "",
"state": "passed"
},
"protocols:LabelPoseFromResidueSelectorMoverTests:test_name": {
"log": "",
"state": "passed"
},
"protocols:LabelPoseFromResidueSelectorMoverTests:test_unlabel": {
"log": "",
"state": "passed"
},
"protocols:LigInterfaceConstraintsTest:test_interface_constraints": {
"log": "",
"state": "passed"
},
"protocols:LigandAreaLoaderTests:test_ligand_area_loader_defines_valid_xsd": {
"log": "",
"state": "passed"
},
"protocols:LigandConformerTests:test_ligand_conformer_measure_global_coords": {
"log": "",
"state": "passed"
},
"protocols:LigandConformerTests:test_ligand_conformer_recover_input_coords": {
"log": "",
"state": "passed"
},
"protocols:LigandMetalContactSelectorTests:test_dist_cutoff_multiplier": {
"log": "",
"state": "passed"
},
"protocols:LigandMetalContactSelectorTests:test_parse_tag_embedded_selector": {
"log": "",
"state": "passed"
},
"protocols:LigandMetalContactSelectorTests:test_parse_tag_invalid": {
"log": "",
"state": "passed"
},
"protocols:LigandMetalContactSelectorTests:test_parse_tag_named_selector": {
"log": "",
"state": "passed"
},
"protocols:LigandMetalContactSelectorTests:test_parse_tag_resnum_list": {
"log": "",
"state": "passed"
},
"protocols:LigandScoresUtilTests:test_ligand_travel": {
"log": "",
"state": "passed"
},
"protocols:LigandScoresUtilTests:test_rmsds": {
"log": "",
"state": "passed"
},
"protocols:LimitAromaChi2OperationTests:test_limit_aroma_chi2": {
"log": "",
"state": "passed"
},
"protocols:LocalBackboneMoverTests:test_free_peptide": {
"log": "",
"state": "passed"
},
"protocols:LocalBackboneMoverTests:test_free_peptide_move": {
"log": "",
"state": "passed"
},
"protocols:LocalBackboneMoverTests:test_free_peptide_movers": {
"log": "",
"state": "passed"
},
"protocols:LocalBackboneMoverTests:test_gap_closer": {
"log": "",
"state": "passed"
},
"protocols:LongestContinuousApolarSegmentFilterTests:test_multichain_pose_withouttermini": {
"log": "",
"state": "passed"
},
"protocols:LongestContinuousApolarSegmentFilterTests:test_multichain_pose_withselection": {
"log": "",
"state": "passed"
},
"protocols:LongestContinuousApolarSegmentFilterTests:test_multichain_pose_withtermini": {
"log": "",
"state": "passed"
},
"protocols:LongestContinuousApolarSegmentFilterTests:test_singlechain_pose_withouttermini": {
"log": "",
"state": "passed"
},
"protocols:LongestContinuousApolarSegmentFilterTests:test_singlechain_pose_withselection": {
"log": "",
"state": "passed"
},
"protocols:LongestContinuousApolarSegmentFilterTests:test_singlechain_pose_withtermini": {
"log": "",
"state": "passed"
},
"protocols:LongestContinuousPolarSegmentFilterTests:test_multichain_pose_withouttermini": {
"log": "",
"state": "passed"
},
"protocols:LongestContinuousPolarSegmentFilterTests:test_multichain_pose_withselection": {
"log": "",
"state": "passed"
},
"protocols:LongestContinuousPolarSegmentFilterTests:test_multichain_pose_withtermini": {
"log": "",
"state": "passed"
},
"protocols:LongestContinuousPolarSegmentFilterTests:test_singlechain_pose_withouttermini": {
"log": "",
"state": "passed"
},
"protocols:LongestContinuousPolarSegmentFilterTests:test_singlechain_pose_withselection": {
"log": "",
"state": "passed"
},
"protocols:LongestContinuousPolarSegmentFilterTests:test_singlechain_pose_withtermini": {
"log": "",
"state": "passed"
},
"protocols:LoopAnalyzerMoverTests:test_Cterm_adjacent": {
"log": "",
"state": "passed"
},
"protocols:LoopAnalyzerMoverTests:test_Nterm_adjacent": {
"log": "",
"state": "passed"
},
"protocols:LoopAnalyzerMoverTests:test_at_Nterm": {
"log": "",
"state": "passed"
},
"protocols:LoopAnalyzerMoverTests:test_internal_termini": {
"log": "",
"state": "passed"
},
"protocols:LoopAnalyzerMoverTests:test_internal_terminiCterm": {
"log": "",
"state": "passed"
},
"protocols:LoopAnalyzerMoverTests:test_simple_loop": {
"log": "",
"state": "passed"
},
"protocols:LoopLengthChangeTests:test_insert_one_then_three": {
"log": "",
"state": "passed"
},
"protocols:LoopModelerTests:test_apply": {
"log": "",
"state": "passed"
},
"protocols:LoopModelerTests:test_build_options": {
"log": "",
"state": "passed"
},
"protocols:LoopModelerTests:test_centroid_options": {
"log": "",
"state": "passed"
},
"protocols:LoopModelerTests:test_custom_centroid_movers": {
"log": "",
"state": "passed"
},
"protocols:LoopModelerTests:test_custom_fullatom_movers": {
"log": "",
"state": "passed"
},
"protocols:LoopModelerTests:test_custom_movers": {
"log": "",
"state": "passed"
},
"protocols:LoopModelerTests:test_default_config": {
"log": "",
"state": "passed"
},
"protocols:LoopModelerTests:test_empty_config": {
"log": "",
"state": "passed"
},
"protocols:LoopModelerTests:test_fast_option": {
"log": "",
"state": "passed"
},
"protocols:LoopModelerTests:test_fullatom_options": {
"log": "",
"state": "passed"
},
"protocols:LoopModelerTests:test_illegal_movers": {
"log": "",
"state": "passed"
},
"protocols:LoopModelerTests:test_loophash_kic": {
"log": "",
"state": "passed"
},
"protocols:LoopModelerTests:test_modeler_options": {
"log": "",
"state": "passed"
},
"protocols:LoopModelerTests:test_temp_cycles_regex": {
"log": "",
"state": "passed"
},
"protocols:LoopTest:test_increasing": {
"log": "",
"state": "passed"
},
"protocols:LoopTest:test_length": {
"log": "",
"state": "passed"
},
"protocols:LoopTest:test_midpoint": {
"log": "",
"state": "passed"
},
"protocols:LoophashTest:test_database": {
"log": "",
"state": "passed"
},
"protocols:LoopsFileIOTest:test_LoopsFileIO_read_JSON_loops_file": {
"log": "",
"state": "passed"
},
"protocols:LoopsFileIOTest:test_LoopsFileIO_read_loopstream_from_pose_numbered_file": {
"log": "",
"state": "passed"
},
"protocols:LoopsFileIOTest:test_LoopsFileIO_read_loopstream_from_pose_numbered_file_w_cutpoint": {
"log": "",
"state": "passed"
},
"protocols:LoopsFileIOTest:test_LoopsFileIO_read_loopstream_from_pose_numbered_file_w_extended": {
"log": "",
"state": "passed"
},
"protocols:LoopsFileIOTest:test_LoopsFileIO_read_loopstream_from_pose_numbered_file_w_skiprate": {
"log": "",
"state": "passed"
},
"protocols:LoopsFileIOTest:test_PoseNumberedLoopFileReader_loop_extended": {
"log": "",
"state": "passed"
},
"protocols:LoopsFileIOTest:test_PoseNumberedLoopFileReader_loop_extended_old_format": {
"log": "",
"state": "passed"
},
"protocols:LoopsFileIOTest:test_PoseNumberedLoopFileReader_loop_w_cutpoint": {
"log": "",
"state": "passed"
},
"protocols:LoopsFileIOTest:test_PoseNumberedLoopFileReader_loop_w_skip_rate": {
"log": "",
"state": "passed"
},
"protocols:LoopsFileIOTest:test_PoseNumberedLoopFileReader_one_loop": {
"log": "",
"state": "passed"
},
"protocols:LoopsFileIOTest:test_PoseNumberedLoopFileReader_one_loop_w_comments": {
"log": "",
"state": "passed"
},
"protocols:LoopsFileIOTest:test_PoseNumberedLoopFileReader_two_loops": {
"log": "",
"state": "passed"
},
"protocols:LoopsFileLoaderTest:test_create_LoopsFileData_from_LoopsFileLoder": {
"log": "",
"state": "passed"
},
"protocols:LoopsFoldTreeTest:test_CTerminalLoopFoldTree": {
"log": "",
"state": "passed"
},
"protocols:LoopsFoldTreeTest:test_CTerminalLoopFoldTreeWithStupidCutpoint": {
"log": "",
"state": "passed"
},
"protocols:LoopsFoldTreeTest:test_MultiLoopFoldTree": {
"log": "",
"state": "passed"
},
"protocols:LoopsFoldTreeTest:test_Multichain_CtermLoop": {
"log": "",
"state": "passed"
},
"protocols:LoopsFoldTreeTest:test_Multichain_NandCtermLoop": {
"log": "",
"state": "passed"
},
"protocols:LoopsFoldTreeTest:test_Multichain_NtermLoop": {
"log": "",
"state": "passed"
},
"protocols:LoopsFoldTreeTest:test_NTerminalLoopFoldTree": {
"log": "",
"state": "passed"
},
"protocols:LoopsFoldTreeTest:test_NTerminalLoopFoldTreeWithStupidCutpoint": {
"log": "",
"state": "passed"
},
"protocols:LoopsFoldTreeTest:test_SingleLoopFoldTree": {
"log": "",
"state": "passed"
},
"protocols:LoopsTest:test_center_of_mass": {
"log": "",
"state": "passed"
},
"protocols:LoopsTest:test_invert_between": {
"log": "",
"state": "passed"
},
"protocols:LoopsTest:test_invert_empty": {
"log": "",
"state": "passed"
},
"protocols:LoopsTest:test_invert_preceding": {
"log": "",
"state": "passed"
},
"protocols:LoopsTest:test_invert_trailing": {
"log": "",
"state": "passed"
},
"protocols:LoopsTest:test_loop_size": {
"log": "",
"state": "passed"
},
"protocols:LoopsTest:test_loop_size_empty": {
"log": "",
"state": "passed"
},
"protocols:LoopsUtilTest:testSafeExtendLoopsAndIdealize": {
"log": "",
"state": "passed"
},
"protocols:LoopsUtilTest:test_loop_picking_aligned": {
"log": "",
"state": "passed"
},
"protocols:LoopsUtilTest:test_loop_picking_chainbreak": {
"log": "",
"state": "passed"
},
"protocols:MPDockingSetupMoverTest:test_parse_my_tag_input": {
"log": "",
"state": "passed"
},
"protocols:MPFastRelaxFoldTreeTest:test_double_chain_com_anchored_foldtree": {
"log": "",
"state": "passed"
},
"protocols:MPFastRelaxFoldTreeTest:test_single_chain_com_anchored_foldtree": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_MPIWorkPoolJobDistributor_master_node_vanilla_end_to_end_all_successes": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_jd3_workpool_archive_output_result_from_other_archive": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_jd3_workpool_archive_two_rounds_one_archive_no_archiving_on_node_0": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_jd3_workpool_jd_checkpoint_archive_node": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_jd3_workpool_jd_checkpoint_master_node": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_jd3_workpool_manager_deallocation_messages_sent_to_remote_nodes": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_jd3_workpool_manager_two_rounds_no_archive": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_jd3_workpool_manager_two_rounds_no_archive_last_job_fails": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_jd3_workpool_manager_two_rounds_one_archive_no_archiving_on_node_0": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_jd3_workpool_manager_two_rounds_one_archive_one_outputter_no_archiving_on_node_0": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_jd3_workpool_worker_deallocation_messages_sent_to_remote_nodes": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_jd3_workpool_worker_two_rounds_one_archive_no_archiving_on_node_0": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_master_node_response_to_failure_to_retrieve_job_result_from_archive": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_master_node_response_to_failure_to_retrieve_job_result_from_archive_job_previously_output": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_master_node_response_to_failure_to_retrieve_job_result_from_archive_job_result_discarded": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_send_bad_message_to_master_node_should_never_happen": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_work_pool_jd_archive_asked_for_result_it_doesnt_have": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_work_pool_jd_job_digraph_updater_and_job_node_w_zero_jobs": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_work_pool_jd_manager_asked_for_result_it_doesnt_have": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_work_pool_jd_master_node_fails_to_deserialize_undeserializable_job_summary": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_work_pool_jd_master_tries_to_serialize_larval_job_w_unserializable_data": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_work_pool_jd_worker_tries_to_deserialize_job_result_w_undeserializable_data": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_work_pool_jd_worker_tries_to_deserialize_larval_job_w_undeserializable_data": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_work_pool_jd_worker_tries_to_serialize_job_result_w_unserializable_data": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_work_pool_jd_worker_tries_to_serialize_job_summary_w_unserializable_data": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_workpool_jd3_master_node_job_failed_bad_input": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_workpool_jd3_master_node_job_failed_do_not_retry": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_workpool_jd3_master_node_job_failed_w_exception": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_workpool_jd3_master_node_job_failed_w_retry_limit_exceeded": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_workpool_jd3_worker_and_outputter_node_vanilla_end_to_end_all_successes": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_workpool_jd3_worker_node_job_failed_bad_input": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_workpool_jd3_worker_node_job_failed_do_not_retry": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_workpool_jd3_worker_node_job_failed_w_bad_inputs_exception": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_workpool_jd3_worker_node_job_failed_w_exception": {
"log": "",
"state": "passed"
},
"protocols:MPIWorkPoolJobDistributorTests:test_workpool_jd3_worker_node_job_failed_w_retry_limit_exceeded": {
"log": "",
"state": "passed"
},
"protocols:MPLipidAccessibilityTest:test_mp_lipid_accessibility": {
"log": "",
"state": "passed"
},
"protocols:MPLipidAccessibilityTest:test_parse_my_tag_input": {
"log": "",
"state": "passed"
},
"protocols:MPRangeRelaxMover:test_mprangerelaxmover_parse_my_tag_input": {
"log": "",
"state": "passed"
},
"protocols:MRSClusteringTests:test_factory": {
"log": "",
"state": "passed"
},
"protocols:MRSClusteringTests:test_jump_serialization": {
"log": "",
"state": "passed"
},
"protocols:MRSClusteringTests:test_sequence_serialization": {
"log": "",
"state": "passed"
},
"protocols:MRSJobQueenTests:test_MRSJobQueen_with_good_input": {
"log": "",
"state": "passed"
},
"protocols:MRSJobQueenTests:test_incorrect_attribute_value": {
"log": "",
"state": "passed"
},
"protocols:MRSJobQueenTests:test_not_enough_job_results_for_next_node": {
"log": "",
"state": "passed"
},
"protocols:MRSJobQueenTests:test_tag_for_nonmover_nonfilter": {
"log": "",
"state": "passed"
},
"protocols:MRSJobQueenTests:test_typo_in_score_function": {
"log": "",
"state": "passed"
},
"protocols:MSDMoverTest:test_correct_constraints": {
"log": "",
"state": "passed"
},
"protocols:MSDMoverTest:test_keeps_constraints": {
"log": "",
"state": "passed"
},
"protocols:MSDMoverTest:test_resfile_parsing": {
"log": "",
"state": "passed"
},
"protocols:MakeCanonicalHelixTest:test_default_dihedral_angles": {
"log": "",
"state": "passed"
},
"protocols:MatchConsolidatorTests:test_BestMatchesCollection_full": {
"log": "",
"state": "passed"
},
"protocols:MatchConsolidatorTests:test_BestMatchesCollection_not_full": {
"log": "",
"state": "passed"
},
"protocols:MatchConstraintFileInfoTest:test_interface_constraints": {
"log": "",
"state": "passed"
},
"protocols:MembraneEnergyLandscapeSamplerTest:test_axis_center_of_alpha_helix": {
"log": "",
"state": "passed"
},
"protocols:MembraneEnergyLandscapeSamplerTest:test_axis_center_of_protein": {
"log": "",
"state": "passed"
},
"protocols:MembranePositionFromTopologyMoverTest:test_initial_membrane_position_move": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_angle_rmsd_method": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_average_antiparallel_embeddings": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_average_embeddings": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_calc_helix_angles": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_calc_helix_axis": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_chain_com": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_check_vector": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_compute_embeddings_by_chain": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_compute_structure_based_embedding1": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_compute_structure_based_embedding2": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_compute_structure_based_embedding3": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_compute_structure_based_embedding4": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_compute_structure_based_embedding5": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_compute_structure_based_embedding6": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_compute_structure_based_embedding7": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_compute_structure_based_embedding8": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_create_membrane_docking_foldtree_from_partners": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_create_membrane_foldtree_anchor_com": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_create_membrane_foldtree_anchor_pose_tmcom": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_create_membrane_foldtree_anchor_tmcom": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_create_membrane_multi_partner_foldtree_anchor_tmcom": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_create_specific_membrane_foldtree": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_is_fixed_on_fixed_memb": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_is_fixed_on_moveable_memb": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_is_independently_moveable_on_fixed_memb": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_is_independently_moveable_on_independently_moveable_memb": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_membrane_bb_rmsd_no_super": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_membrane_bb_rmsd_no_super_allatom": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_membrane_bb_rmsd_with_super": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_membrane_bb_rmsd_with_super_allatom": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_pose_tm_COM": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_rsd_closest_chain_com": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_rsd_closest_chain_tm_com": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_rsd_closest_pose_tm_COM": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_split_topology_by_chain_noshift": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_split_topology_by_jump": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_split_topology_by_jump_noshift": {
"log": "",
"state": "passed"
},
"protocols:MembraneUtil:test_tm_com": {
"log": "",
"state": "passed"
},
"protocols:MetalContactsConstraintGeneratorTests:test_default_values": {
"log": "",
"state": "passed"
},
"protocols:MetalContactsConstraintGeneratorTests:test_invalid_tags": {
"log": "",
"state": "passed"
},
"protocols:MetalContactsConstraintGeneratorTests:test_set_contacts": {
"log": "",
"state": "passed"
},
"protocols:MetalContactsConstraintGeneratorTests:test_set_ligand": {
"log": "",
"state": "passed"
},
"protocols:MetalContactsConstraintGeneratorTests:test_set_options_in_tag": {
"log": "",
"state": "passed"
},
"protocols:MinimumInterAlphaDistanceMetricTests:test_MIADM": {
"log": "",
"state": "passed"
},
"protocols:MonteCarloTests:test_interface_mc": {
"log": "",
"state": "passed"
},
"protocols:MonteCarloTests:test_vanilla_mc": {
"log": "",
"state": "passed"
},
"protocols:MotifGraftMoverTests:test_self_graft_recovery_oneFragment_using_end2endMatching": {
"log": "",
"state": "passed"
},
"protocols:MotifGraftMoverTests:test_self_graft_recovery_oneFragment_using_fixBBmatching": {
"log": "",
"state": "passed"
},
"protocols:MotifGraftMoverTests:test_self_graft_recovery_twoFragment_using_end2endMatching": {
"log": "",
"state": "passed"
},
"protocols:MotifGraftMoverTests:test_self_graft_recovery_twoFragment_using_fixBBmatching": {
"log": "",
"state": "passed"
},
"protocols:MoveMapBuilderLoaderTests:test_movemap_builder_loader_defines_valid_xsd": {
"log": "",
"state": "passed"
},
"protocols:MoverFactoryTests:test_MoverFactory_all_Mover_all_attributes_have_descriptions": {
"log": "",
"state": "passed"
},
"protocols:MoverFactoryTests:test_MoverFactory_all_Mover_complexTypes_have_descriptions": {
"log": "",
"state": "passed"
},
"protocols:MoverFactoryTests:test_all_movers_define_valid_xsds": {
"log": "",
"state": "passed"
},
"protocols:MoverJobTests:test_basic_mover_job": {
"log": "",
"state": "passed"
},
"protocols:MoverJobTests:test_seq_mover_job": {
"log": "",
"state": "passed"
},
"protocols:MoversTest:test_AllMovers": {
"log": "",
"state": "passed"
},
"protocols:MultiThreadedJobDistributorTests:test_dummy_in_tss_one_thread": {
"log": "",
"state": "passed"
},
"protocols:MultiThreadedJobDistributorTests:test_tss_in_threads": {
"log": "",
"state": "passed"
},
"protocols:MultiplePoseMoverTests:test_DummyMultipleOutputMover_get_additional_output": {
"log": "",
"state": "passed"
},
"protocols:MultiplePoseMoverTests:test_additionaloutputwrapper": {
"log": "",
"state": "passed"
},
"protocols:MultiplePoseMoverTests:test_import": {
"log": "",
"state": "passed"
},
"protocols:MultiplePoseMoverTests:test_import_multilevel": {
"log": "",
"state": "passed"
},
"protocols:MultiplePoseMoverTests:test_input_limit": {
"log": "",
"state": "passed"
},
"protocols:MultiplePoseMoverTests:test_invalid_import_filter": {
"log": "",
"state": "passed"
},
"protocols:MultiplePoseMoverTests:test_invalid_import_mover": {
"log": "",
"state": "passed"
},
"protocols:MultiplePoseMoverTests:test_invalid_import_mover_recursion": {
"log": "",
"state": "passed"
},
"protocols:MultiplePoseMoverTests:test_logical_selector_and": {
"log": "",
"state": "passed"
},
"protocols:MultiplePoseMoverTests:test_logical_selector_or_and": {
"log": "",
"state": "passed"
},
"protocols:MultiplePoseMoverTests:test_mover_chaining": {
"log": "",
"state": "passed"
},
"protocols:MultiplePoseMoverTests:test_mover_chaining_distribute_twice": {
"log": "",
"state": "passed"
},
"protocols:MultiplePoseMoverTests:test_mover_chaining_two_levels": {
"log": "",
"state": "passed"
},
"protocols:MultiplePoseMoverTests:test_output_limit": {
"log": "",
"state": "passed"
},
"protocols:MultiplePoseMoverTests:test_selector": {
"log": "",
"state": "passed"
},
"protocols:MultiplePoseMoverTests:test_selector_filter": {
"log": "",
"state": "passed"
},
"protocols:MultiplePoseMoverTests:test_selector_filter_reporter": {
"log": "",
"state": "passed"
},
"protocols:MultiplePoseMoverTests:test_tag_parent": {
"log": "",
"state": "passed"
},
"protocols:MultistateFitnessFunctionTest:test_top_entity_set_handle_ties": {
"log": "",
"state": "passed"
},
"protocols:MultistateFitnessFunctionTest:test_top_entity_set_keep_four": {
"log": "",
"state": "passed"
},
"protocols:MutateResidueTests:test_mutate_disulfide": {
"log": "",
"state": "passed"
},
"protocols:MutateResidueTests:test_mutate_residue": {
"log": "",
"state": "passed"
},
"protocols:NMethylationTests:test_linear_nmethyl_peptide": {
"log": "",
"state": "passed"
},
"protocols:NMethylationTests_betanov15:test_linear_nmethyl_peptide": {
"log": "",
"state": "passed"
},
"protocols:NMethylationTests_betanov16:test_linear_nmethyl_peptide": {
"log": "",
"state": "passed"
},
"protocols:NativeSelectorTests:test_native_is_too_large": {
"log": "",
"state": "passed"
},
"protocols:NativeSelectorTests:test_native_is_too_small": {
"log": "",
"state": "passed"
},
"protocols:NativeSelectorTests:test_serialize_simple1": {
"log": "",
"state": "passed"
},
"protocols:NativeSelectorTests:test_serialize_simple2": {
"log": "",
"state": "passed"
},
"protocols:NativeSelectorTests:test_simple1": {
"log": "",
"state": "passed"
},
"protocols:NativeSelectorTests:test_simple2": {
"log": "",
"state": "passed"
},
"protocols:Neighbor_CalculatorsTests:test_InterGroupNeighborsCalculator": {
"log": "",
"state": "passed"
},
"protocols:Neighbor_CalculatorsTests:test_NeighborHoodDistanceCalculators": {
"log": "",
"state": "passed"
},
"protocols:Neighbor_CalculatorsTests:test_NeighborsByDistanceCalculators": {
"log": "",
"state": "passed"
},
"protocols:NewSEWINGHasherTests:test_alignment_generator": {
"log": "",
"state": "passed"
},
"protocols:NewSEWINGHasherTests:test_can_hash": {
"log": "",
"state": "passed"
},
"protocols:NewSEWINGHasherTests:test_find_aligned_atoms": {
"log": "",
"state": "passed"
},
"protocols:NewSEWINGHasherTests:test_generate_key": {
"log": "",
"state": "passed"
},
"protocols:NewSEWINGHasherTests:test_hash_segments": {
"log": "",
"state": "passed"
},
"protocols:NewSEWINGHasherTests:test_transform_segments": {
"log": "",
"state": "passed"
},
"protocols:NonlocalUtilTest:test_compute_jump_rmsd_identity": {
"log": "",
"state": "passed"
},
"protocols:NonlocalUtilTest:test_compute_jump_rmsd_with_no_jumps": {
"log": "",
"state": "passed"
},
"protocols:NonlocalUtilTest:test_limit_chunk_size": {
"log": "",
"state": "passed"
},
"protocols:NonlocalUtilTest:test_random_position": {
"log": "",
"state": "passed"
},
"protocols:NonlocalUtilTest:test_remove_virtual_residues": {
"log": "",
"state": "passed"
},
"protocols:NubInitioLoopClosureMoverTests:test_labeled_closed": {
"log": "",
"state": "passed"
},
"protocols:NubInitioLoopClosureMoverTests:test_labeled_open": {
"log": "",
"state": "passed"
},
"protocols:NubInitioLoopClosureMoverTests:test_name": {
"log": "",
"state": "passed"
},
"protocols:NubInitioLoopClosureMoverTests:test_not_labeled": {
"log": "",
"state": "passed"
},
"protocols:NubInitioMoverTests:test_name": {
"log": "",
"state": "passed"
},
"protocols:NubInitioMoverTests:test_one_motif": {
"log": "",
"state": "passed"
},
"protocols:NubInitioMoverTests:test_two_motifs": {
"log": "",
"state": "passed"
},
"protocols:OccupiedSpaceHashTests:test_occupied_space_hash_ctor": {
"log": "",
"state": "passed"
},
"protocols:OccupiedSpaceHashTests:test_occupied_space_hash_note_hit_geometry": {
"log": "",
"state": "passed"
},
"protocols:OccupiedSpaceHashTests:test_occupied_space_hash_note_hit_geometry2": {
"log": "",
"state": "passed"
},
"protocols:OmnibusDisulfideAnalysisLabelerMoverTests:testOmnibusDisulfideAnalysisLabelerMover": {
"log": "",
"state": "passed"
},
"protocols:OopPuckMoverTest:test_OopPuckMoverMinus": {
"log": "",
"state": "passed"
},
"protocols:OopPuckMoverTest:test_OopPuckMoverPlus": {
"log": "",
"state": "passed"
},
"protocols:OopPuckMoverTest:test_OopPuckMoverSmall": {
"log": "",
"state": "passed"
},
"protocols:OptimizeMembranePositionMoverTest:test_default_constructor": {
"log": "",
"state": "passed"
},
"protocols:OptimizeMembranePositionMoverTest:test_parse_my_tag_input": {
"log": "",
"state": "passed"
},
"protocols:OptimizeProteinEmbeddingMoverTest:test_parse_my_tag_input": {
"log": "",
"state": "passed"
},
"protocols:OversaturatedHbondAcceptorFilterTests:test_bb_bb_extra_hbond": {
"log": "",
"state": "passed"
},
"protocols:OversaturatedHbondAcceptorFilter_betanov15_Tests:test_bb_bb_extra_hbond": {
"log": "",
"state": "passed"
},
"protocols:OversaturatedHbondAcceptorFilter_betanov16_Tests:test_bb_bb_extra_hbond": {
"log": "",
"state": "passed"
},
"protocols:PCSEnergyTests:test_PCSEnergy_instantiation": {
"log": "",
"state": "passed"
},
"protocols:PCSEnergyTests:test_PCSEnergy_score_calculation": {
"log": "",
"state": "passed"
},
"protocols:PCSEnergyTests:test_PCSEnergy_score_calculation_scaled_data": {
"log": "",
"state": "passed"
},
"protocols:PCSEnergyTests:test_PCSEnergy_show_info": {
"log": "",
"state": "passed"
},
"protocols:PCSEnergyTests:test_PCSEnergy_show_info_scaled_data": {
"log": "",
"state": "passed"
},
"protocols:PCSMultiGridTest:test_PCSMultiGrid_creation": {
"log": "",
"state": "passed"
},
"protocols:PCSMultiGridTest:test_PCSMultiGrid_scoring": {
"log": "",
"state": "passed"
},
"protocols:PCSMultiGridTest:test_PCSMultiGrid_update": {
"log": "",
"state": "passed"
},
"protocols:PCSSingleGridTest:test_PCSSingleGrid_creation": {
"log": "",
"state": "passed"
},
"protocols:PCSSingleGridTest:test_PCSSingleGrid_scoring": {
"log": "",
"state": "passed"
},
"protocols:PCSSingleGridTest:test_PCSSingleGrid_update": {
"log": "",
"state": "passed"
},
"protocols:PCSTensorOptimizerTests:test_PCSTensorOptimizer_error_function": {
"log": "",
"state": "passed"
},
"protocols:PCSTensorOptimizerTests:test_PCSTensorOptimizer_instantiation": {
"log": "",
"state": "passed"
},
"protocols:PCSTensorOptimizerTests:test_minimization_with_PCSTensorOptimizer_": {
"log": "",
"state": "passed"
},
"protocols:PDBPoseOutputterTests:test_mmTF_output": {
"log": "",
"state": "passed"
},
"protocols:PDBPoseOutputterTests:test_output_path_handling_1": {
"log": "",
"state": "passed"
},
"protocols:PDBPoseOutputterTests:test_output_path_handling_2": {
"log": "",
"state": "passed"
},
"protocols:PDBPoseOutputterTests:test_output_path_handling_3": {
"log": "",
"state": "passed"
},
"protocols:PDBPoseOutputterTests:test_output_path_handling_4": {
"log": "",
"state": "passed"
},
"protocols:PDBPoseOutputterTests:test_output_path_handling_prefix_suffix": {
"log": "",
"state": "passed"
},
"protocols:PDBPoseOutputterTests:test_output_path_handling_priority_1": {
"log": "",
"state": "passed"
},
"protocols:PDBPoseOutputterTests:test_output_path_tag_dir": {
"log": "",
"state": "passed"
},
"protocols:PDBPoseOutputterTests:test_output_path_tag_prefix_suffix": {
"log": "",
"state": "passed"
},
"protocols:PREEnergyTests:test_PREEnergy_instantiation": {
"log": "",
"state": "passed"
},
"protocols:PREEnergyTests:test_score_calculation_with_spinlabel_bump_energy_filter": {
"log": "",
"state": "passed"
},
"protocols:PREEnergyTests:test_score_calculation_with_spinlabel_distance_filter": {
"log": "",
"state": "passed"
},
"protocols:PREEnergyTests:test_show_info": {
"log": "",
"state": "passed"
},
"protocols:PREMoverTests:test_PREMover_apply_function": {
"log": "",
"state": "passed"
},
"protocols:PREMoverTests:test_PREMover_instantiation_through_ctor": {
"log": "",
"state": "passed"
},
"protocols:PREMoverTests:test_PREMover_instantiation_through_factory": {
"log": "",
"state": "passed"
},
"protocols:PREMoverTests:test_PREMover_parse_my_tag_function": {
"log": "",
"state": "passed"
},
"protocols:PREMoverTests:test_PREMover_setters_and_getters": {
"log": "",
"state": "passed"
},
"protocols:PackDaemonTest:test_DenseIGRepacker_create_dense_ig": {
"log": "",
"state": "passed"
},
"protocols:PackDaemonTest:test_DoubleDenseIGRepacker_create_double_dense_ig": {
"log": "",
"state": "passed"
},
"protocols:PackDaemonTest:test_daemon_set_setup": {
"log": "",
"state": "passed"
},
"protocols:PackDaemonTest:test_pack_daemon_ctor": {
"log": "",
"state": "passed"
},
"protocols:PackDaemonTest:test_pack_daemon_repack": {
"log": "",
"state": "passed"
},
"protocols:PairedSheetResidueSelectorTests:test_paired_res": {
"log": "",
"state": "passed"
},
"protocols:ParamsDataStorageTests:test_params_data_copying": {
"log": "",
"state": "passed"
},
"protocols:ParamsDataStorageTests:test_params_data_storage": {
"log": "",
"state": "passed"
},
"protocols:ParamsDataStorageTests:test_params_residue_storage": {
"log": "",
"state": "passed"
},
"protocols:ParsedProtocolTests:test_filter_reporting": {
"log": "",
"state": "passed"
},
"protocols:ParsedProtocolTests:test_filter_reporting_commandline": {
"log": "",
"state": "passed"
},
"protocols:PatchChemistryTests:test_apply_patch": {
"log": "",
"state": "passed"
},
"protocols:PatchChemistryTests:test_xml": {
"log": "",
"state": "passed"
},
"protocols:PatchChemistryTests:test_xsd": {
"log": "",
"state": "passed"
},
"protocols:PeptideDeriverFilterTests:test_assignment": {
"log": "",
"state": "passed"
},
"protocols:PeptideDeriverFilterTests:test_copy_ctor": {
"log": "",
"state": "passed"
},
"protocols:PeptideDeriverFilterTests:test_protocol": {
"log": "",
"state": "passed"
},
"protocols:PeptideDeriverFilterTests:test_report_format_parsing": {
"log": "",
"state": "passed"
},
"protocols:PeptideDeriverFilterTests:test_rosettascripts_options": {
"log": "",
"state": "passed"
},
"protocols:PeptideInternalHbondsMetricTests:test_generate_allowed_partners": {
"log": "",
"state": "passed"
},
"protocols:PeptideInternalHbondsMetricTests:test_peptide_internal_hbonds_filter": {
"log": "",
"state": "passed"
},
"protocols:PeptideInternalHbondsMetricTests:test_peptide_internal_hbonds_metric": {
"log": "",
"state": "passed"
},
"protocols:PeptideStubMoverTests:test_append": {
"log": "",
"state": "passed"
},
"protocols:PeptideStubMoverTests:test_append2": {
"log": "",
"state": "passed"
},
"protocols:PeptideStubMoverTests:test_append_NME_and_prepend_ACE": {
"log": "",
"state": "passed"
},
"protocols:PeptideStubMoverTests:test_append_chainA": {
"log": "",
"state": "passed"
},
"protocols:PeptideStubMoverTests:test_append_repeat": {
"log": "",
"state": "passed"
},
"protocols:PeptideStubMoverTests:test_complicated_labeling": {
"log": "",
"state": "passed"
},
"protocols:PeptideStubMoverTests:test_multi_append": {
"log": "",
"state": "passed"
},
"protocols:PeptideStubMoverTests:test_multi_prepend": {
"log": "",
"state": "passed"
},
"protocols:PeptideStubMoverTests:test_prepend": {
"log": "",
"state": "passed"
},
"protocols:PeptideStubMoverTests:test_prepend2": {
"log": "",
"state": "passed"
},
"protocols:PeptideStubMoverTests:test_prepend_chainB": {
"log": "",
"state": "passed"
},
"protocols:PeptideStubMoverTests:test_prepend_fail": {
"log": "",
"state": "passed"
},
"protocols:PeptideStubMoverTests:test_prepend_repeat": {
"log": "",
"state": "passed"
},
"protocols:PerturbBundleTests:test_perturb_r0_uniform": {
"log": "",
"state": "passed"
},
"protocols:PlainSilentFileJobDistributorTest:test_next_job": {
"log": "",
"state": "passed"
},
"protocols:PointMutScanDriverTests:test_calculate_neighbor_table": {
"log": "",
"state": "passed"
},
"protocols:PointMutScanDriverTests:test_fill_mutations_list": {
"log": "",
"state": "passed"
},
"protocols:PointMutScanDriverTests:test_fill_mutations_list_double_mutant_scan": {
"log": "",
"state": "passed"
},
"protocols:PointMutScanDriverTests:test_fill_mutations_list_single_mutant_scan": {
"log": "",
"state": "passed"
},
"protocols:PointMutScanDriverTests:test_make_specific_mutant": {
"log": "",
"state": "passed"
},
"protocols:PointMutScanDriverTests:test_make_specific_mutant_insertion_code": {
"log": "",
"state": "passed"
},
"protocols:PoseFromSequenceMoverTests:test_apply": {
"log": "",
"state": "passed"
},
"protocols:PoseFromSequenceMoverTests:test_ctor": {
"log": "",
"state": "passed"
},
"protocols:PoseFromSequenceMoverTests:test_parse_my_tag": {
"log": "",
"state": "passed"
},
"protocols:PoseManipulationTests:test_linear_rigid_body_moves": {
"log": "",
"state": "passed"
},
"protocols:PoseManipulationTests:test_repack_functions": {
"log": "",
"state": "passed"
},
"protocols:PoseManipulationTests:test_rotation_rigid_body_moves": {
"log": "",
"state": "passed"
},
"protocols:PreProlineFilterTests:test_compute": {
"log": "",
"state": "passed"
},
"protocols:PreProlineFilterTests:test_spline": {
"log": "",
"state": "passed"
},
"protocols:PredockRotCenterTest:test_predock_rotcenter": {
"log": "",
"state": "passed"
},
"protocols:ProtLigEnsembleTests:test_process_line": {
"log": "",
"state": "passed"
},
"protocols:ProtLigEnsembleTests:test_sort_by_binding": {
"log": "",
"state": "passed"
},
"protocols:ProtectedConf:test_replace_residue": {
"log": "",
"state": "passed"
},
"protocols:ProteinInterfaceDesignOperationTests:test_ProteinInterfaceDesignOperation": {
"log": "",
"state": "passed"
},
"protocols:ProteinInterfaceDesignOperationTests:test_ProteinInterfaceDesignOperation_all": {
"log": "",
"state": "passed"
},
"protocols:ProteinInterfaceDesignTests:test_AtomicContactCount_filter": {
"log": "",
"state": "passed"
},
"protocols:ProteinProteinInterfaceUpweighterTests:test_packing_4SER": {
"log": "",
"state": "passed"
},
"protocols:ProteinSCSamplerTests:test_sc_sampler_ctor": {
"log": "",
"state": "passed"
},
"protocols:ProteinSCSamplerTests:test_sc_sampler_desymmeterize": {
"log": "",
"state": "passed"
},
"protocols:ProteinSilentReportTests:test_main": {
"log": "",
"state": "passed"
},
"protocols:ProteinUpstreamBuilderTests:test_FullChiSampleSet_exflags_dryrun_vs_regular": {
"log": "",
"state": "passed"
},
"protocols:ProteinUpstreamBuilderTests:test_FullChiSampleSet_semirotameric_dryrun_vs_regular": {
"log": "",
"state": "passed"
},
"protocols:ProteinUpstreamBuilderTests:test_FullChiSampleSet_step_wi_sdrange_dryrun_vs_regular": {
"log": "",
"state": "passed"
},
"protocols:ProteinUpstreamBuilderTests:test_ProteinUpstreamBuilder_build": {
"log": "",
"state": "passed"
},
"protocols:ProteinUpstreamBuilderTests:test_ProteinUpstreamBuilder_build_w_pre_chitip_transform": {
"log": "",
"state": "passed"
},
"protocols:ProteinUpstreamBuilderTests:test_ProteinUpstreamBuilder_recover_hit": {
"log": "",
"state": "passed"
},
"protocols:ProteinUpstreamBuilderTests:test_ProteinUpstreamBuilder_recover_hits": {
"log": "",
"state": "passed"
},
"protocols:ProteinUpstreamBuilderTests:test_build_set_ctor": {
"log": "",
"state": "passed"
},
"protocols:ProteinUpstreamBuilderTests:test_full_sample_set_ctor": {
"log": "",
"state": "passed"
},
"protocols:ProteinUpstreamBuilderTests:test_sc_upstream_geom_coords": {
"log": "",
"state": "passed"
},
"protocols:ProteinUpstreamBuilderTests:test_sc_upstream_geom_map_atoms_to_controlling_chi": {
"log": "",
"state": "passed"
},
"protocols:PruneBuriedUnsatsOperationTests:test_burial_sanity_check": {
"log": "",
"state": "passed"
},
"protocols:PruneBuriedUnsatsOperationTests:test_pruning_arg_and_two_ser": {
"log": "",
"state": "passed"
},
"protocols:PruneBuriedUnsatsOperationTests:test_pruning_asn_to_bb": {
"log": "",
"state": "passed"
},
"protocols:PruneBuriedUnsatsOperationTests:test_pruning_asn_to_satisfied_bb": {
"log": "",
"state": "passed"
},
"protocols:PruneBuriedUnsatsOperationTests:test_pruning_asn_to_satisfied_ser": {
"log": "",
"state": "passed"
},
"protocols:PruneBuriedUnsatsOperationTests:test_pruning_asn_to_ser": {
"log": "",
"state": "passed"
},
"protocols:PseudocontactShiftTests:test_eval_abinitio_pcs_only": {
"log": "",
"state": "passed"
},
"protocols:PseudocontactShiftTests:test_eval_pcs_energy_on_abinitio_output": {
"log": "",
"state": "passed"
},
"protocols:PseudocontactShiftTests:test_eval_pcs_energy_on_native": {
"log": "",
"state": "passed"
},
"protocols:PyMOLMoverTest:test_cmdline_01": {
"log": "",
"state": "passed"
},
"protocols:PyMOLMoverTest:test_link": {
"log": "",
"state": "passed"
},
"protocols:PyMOLMoverTest:test_new_pose_has_no_observer": {
"log": "",
"state": "passed"
},
"protocols:PyMOLMoverTest:test_pose_clone_has_no_observer": {
"log": "",
"state": "passed"
},
"protocols:PyMOLMoverTest:test_pose_has_observer": {
"log": "",
"state": "passed"
},
"protocols:PyMOLMoverTest:test_replaced_pose_keeps_observer": {
"log": "",
"state": "passed"
},
"protocols:QueryDatabaseTests:test_pair_query": {
"log": "",
"state": "passed"
},
"protocols:QueryDatabaseTests:test_single_query": {
"log": "",
"state": "passed"
},
"protocols:RDCEnergyTests:test_PCSEnergy_show_info": {
"log": "",
"state": "passed"
},
"protocols:RDCEnergyTests:test_RDCEnergy_instantiation": {
"log": "",
"state": "passed"
},
"protocols:RDCEnergyTests:test_RDCEnergy_score_calculation": {
"log": "",
"state": "passed"
},
"protocols:RNA_DeNovoOptimizerTest:test_sarcin_ricin_loop_buildup": {
"log": "",
"state": "passed"
},
"protocols:RNA_DeNovoProtocolTest:test_save_times_option": {
"log": "",
"state": "passed"
},
"protocols:RRComparerTests:test_RRComparerAutomorphicRMSD_main": {
"log": "",
"state": "passed"
},
"protocols:RRComparerTests:test_RRComparerRotBins_main": {
"log": "",
"state": "passed"
},
"protocols:RRReporterSQLiteTests:test_RRReporterSQLite_features": {
"log": "",
"state": "passed"
},
"protocols:RRReporterSQLiteTests:test_RRReporterSQLite_full": {
"log": "",
"state": "passed"
},
"protocols:RRReporterTests:test_RRReporterSimple_main": {
"log": "",
"state": "passed"
},
"protocols:RamaMutationSelectorTests:test_select_by_aib": {
"log": "",
"state": "passed"
},
"protocols:RamaMutationSelectorTests:test_select_by_dproline": {
"log": "",
"state": "passed"
},
"protocols:RamaMutationSelectorTests:test_select_by_native": {
"log": "",
"state": "passed"
},
"protocols:RamaMutationSelectorTests:test_select_by_proline": {
"log": "",
"state": "passed"
},
"protocols:RamaMutationSelectorTests:test_select_by_valine": {
"log": "",
"state": "passed"
},
"protocols:RandomizeBBByRamaPreProTests:test_rama_distribution_d_ala": {
"log": "",
"state": "passed"
},
"protocols:RandomizeBBByRamaPreProTests:test_rama_distribution_l_ala": {
"log": "",
"state": "passed"
},
"protocols:ReadPoseExtraScoreFilter:test_use_filter": {
"log": "",
"state": "passed"
},
"protocols:ReadResidueCoordinatesFromPDBTests:test_no_coordinates": {
"log": "",
"state": "passed"
},
"protocols:ReadResidueCoordinatesFromPDBTests:test_read_from_file": {
"log": "",
"state": "passed"
},
"protocols:ReadResidueCoordinatesFromPDBTests:test_read_from_file_nonexistent_residue": {
"log": "",
"state": "passed"
},
"protocols:ReadResidueCoordinatesFromPDBTests:test_read_from_file_one_residue_do_not_exist": {
"log": "",
"state": "passed"
},
"protocols:ReadResidueCoordinatesFromPDBTests:test_read_from_nonexistent_file": {
"log": "",
"state": "passed"
},
"protocols:ReadResidueCoordinatesFromPDBTests:test_read_from_stream": {
"log": "",
"state": "passed"
},
"protocols:ReadResidueCoordinatesFromPDBTests:test_try_save_residue_information_twice": {
"log": "",
"state": "passed"
},
"protocols:RegExManager_tests:test_cdr_regex_parsing": {
"log": "",
"state": "passed"
},
"protocols:Regex_based_cdr_detection_tests:test_cdr_regions_detection": {
"log": "",
"state": "passed"
},
"protocols:RegionTest:test_getters": {
"log": "",
"state": "passed"
},
"protocols:RegionTest:test_length": {
"log": "",
"state": "passed"
},
"protocols:RelativeConnectRightTests:test_connection": {
"log": "",
"state": "passed"
},
"protocols:RemodelConstraintGeneratorTest:test_sheet_constraints": {
"log": "",
"state": "passed"
},
"protocols:RemoveMetalConnectionsMoverTests:test_mover": {
"log": "",
"state": "passed"
},
"protocols:RemoveMetalConnectionsMoverTests:test_mover_his63_cu_only": {
"log": "",
"state": "passed"
},
"protocols:RemoveMetalConnectionsMoverTests:test_mover_not_his63": {
"log": "",
"state": "passed"
},
"protocols:RepackingRefinerTests:test_repacking_refiner_options": {
"log": "",
"state": "passed"
},
"protocols:ReplicateFilterTests:test_basic": {
"log": "",
"state": "passed"
},
"protocols:ReplicateFilterTests:test_parsing": {
"log": "",
"state": "passed"
},
"protocols:ReplicateFilterTests:test_thresholding": {
"log": "",
"state": "passed"
},
"protocols:ResfileAutoRemapTest:test_resfile_auto_remap": {
"log": "",
"state": "passed"
},
"protocols:ResidueCountFilterTests:test_residue_count_filter_manual": {
"log": "",
"state": "passed"
},
"protocols:ResidueCountFilterTests:test_residue_count_report": {
"log": "",
"state": "passed"
},
"protocols:ResidueCountFilterTests:test_residue_count_with_types_and_properties": {
"log": "",
"state": "passed"
},
"protocols:ResidueProbDesignOperationTests:test_task_op": {
"log": "",
"state": "passed"
},
"protocols:ResidueTorsionRestraintsTest:test_randomize_with_constraints": {
"log": "",
"state": "passed"
},
"protocols:ResidueTypeConstraintGeneratorTests:test_change_favor_native_bonus": {
"log": "",
"state": "passed"
},
"protocols:ResidueTypeConstraintGeneratorTests:test_constraints_full_pose_native": {
"log": "",
"state": "passed"
},
"protocols:ResidueTypeConstraintGeneratorTests:test_constraints_full_ref_pose": {
"log": "",
"state": "passed"
},
"protocols:ResidueTypeConstraintGeneratorTests:test_constraints_ref_pose_with_selector": {
"log": "",
"state": "passed"
},
"protocols:ResidueTypeConstraintGeneratorTests:test_constraints_residue_selector": {
"log": "",
"state": "passed"
},
"protocols:ResidueTypeConstraintGeneratorTests:test_constraints_set_type_full_pose": {
"log": "",
"state": "passed"
},
"protocols:ResidueTypeConstraintGeneratorTests:test_constraints_set_type_with_selector": {
"log": "",
"state": "passed"
},
"protocols:ResidueTypeConstraintGeneratorTests:test_two_constraints_same_residue": {
"log": "",
"state": "passed"
},
"protocols:ResidueTypeConstraintMoverTests:test_it_adds_constraints": {
"log": "",
"state": "passed"
},
"protocols:RestrictNonSurfaceToRepackingOperationTests:test_RestrictNonSurfaceToRepackingOperation": {
"log": "",
"state": "passed"
},
"protocols:RestrictOperationsTests:test_RestrictByCalculatorsOperation": {
"log": "",
"state": "passed"
},
"protocols:RestrictOperationsTests:test_RestrictInterGroupVectorOperation": {
"log": "",
"state": "passed"
},
"protocols:RestrictOperationsTests:test_RestrictToInterfaceOperation": {
"log": "",
"state": "passed"
},
"protocols:RestrictOperationsTests:test_RestrictToInterfaceVectorOperation": {
"log": "",
"state": "passed"
},
"protocols:RestrictOperationsTests:test_RestrictToMoveMapChiOperation": {
"log": "",
"state": "passed"
},
"protocols:RestrictOperationsTests:test_RestrictToNeighborhoodOperation": {
"log": "",
"state": "passed"
},
"protocols:RestrictToCDRH3LoopTest:test_RestrictToCDRH3Loop": {
"log": "",
"state": "passed"
},
"protocols:RestrictToLoopsTests:test_copy_constructor": {
"log": "",
"state": "passed"
},
"protocols:RestrictToLoopsTests:test_restrict_design_to_loops": {
"log": "",
"state": "passed"
},
"protocols:RestrictToLoopsTests:test_set_design_loops": {
"log": "",
"state": "passed"
},
"protocols:RestrictToLoopsTests:test_set_loops": {
"log": "",
"state": "passed"
},
"protocols:RestrictToLoopsTests:test_set_loops_from_file": {
"log": "",
"state": "passed"
},
"protocols:RigidBodyMoverTests:test_RigidBodyPerturbMover_int": {
"log": "",
"state": "passed"
},
"protocols:RigidBodyMoverTests:test_RigidBodyPerturbMover_no_int": {
"log": "",
"state": "passed"
},
"protocols:RigidBodyMoverTests:test_RigidBodyPerturbNoCenterMover": {
"log": "",
"state": "passed"
},
"protocols:RigidBodyMoverTests:test_RigidBodyRandomizeMover": {
"log": "",
"state": "passed"
},
"protocols:RigidBodyMoverTests:test_RigidBodySpinMover": {
"log": "",
"state": "passed"
},
"protocols:RigidBodyMoverTests:test_RigidBodyTransMover": {
"log": "",
"state": "passed"
},
"protocols:RigidBodyMoverTests:test_RigidBodyTransMover_parse": {
"log": "",
"state": "passed"
},
"protocols:RigidChunkTest:test_apply_to_template": {
"log": "",
"state": "passed"
},
"protocols:RigidChunkTest:test_chunk": {
"log": "",
"state": "passed"
},
"protocols:RigidChunkTest:test_two_chunk": {
"log": "",
"state": "passed"
},
"protocols:RigidChunkTest:test_two_part_chunk": {
"log": "",
"state": "passed"
},
"protocols:RigidLigandBuilderTests:test_downstream_placement_from_sinisas_param_file": {
"log": "",
"state": "passed"
},
"protocols:RigidLigandBuilderTests:test_lig_downstream_geom": {
"log": "",
"state": "passed"
},
"protocols:RigidLigandBuilderTests:test_rigid_ligand_ds_builder_recover_input_coords": {
"log": "",
"state": "passed"
},
"protocols:RingPlaneFlipMoverTests:test_RingPlaneFlipMover": {
"log": "",
"state": "passed"
},
"protocols:RmsdFromResidueSelectorFilterTests:test_all_true": {
"log": "",
"state": "passed"
},
"protocols:RmsdFromResidueSelectorFilterTests:test_name": {
"log": "",
"state": "passed"
},
"protocols:RmsdFromResidueSelectorFilterTests:test_selection_aligned": {
"log": "",
"state": "passed"
},
"protocols:RmsdFromResidueSelectorFilterTests:test_selection_non_aligned": {
"log": "",
"state": "passed"
},
"protocols:RosettaScriptsJobQueenTests:test_read_resources_from_xml_file": {
"log": "",
"state": "passed"
},
"protocols:RosettaScriptsParserTests:test_all_attributes_in_xsd_have_descriptions": {
"log": "",
"state": "passed"
},
"protocols:RosettaScriptsParserTests:test_allowed_multiple_dependencies": {
"log": "",
"state": "passed"
},
"protocols:RosettaScriptsParserTests:test_multiple_includes": {
"log": "",
"state": "passed"
},
"protocols:RosettaScriptsParserTests:test_output_scoring": {
"log": "",
"state": "passed"
},
"protocols:RosettaScriptsParserTests:test_prohibit_circular_dependencies": {
"log": "",
"state": "passed"
},
"protocols:RosettaScriptsParserTests:test_report_at_end": {
"log": "",
"state": "passed"
},
"protocols:RotamerBoltzmannWeight2Tests:test_calculator_ids": {
"log": "",
"state": "passed"
},
"protocols:RotamerBoltzmannWeight2Tests:test_rbw2_vs_rbw": {
"log": "",
"state": "passed"
},
"protocols:RotamerRecoveryTests:test_RotamerRecovery_main": {
"log": "",
"state": "passed"
},
"protocols:RotateJumpAxisMoverTests:test_RotateJumpAxisMover_random": {
"log": "",
"state": "passed"
},
"protocols:RotateJumpAxisMoverTests:test_RotateJumpAxisMover_range": {
"log": "",
"state": "passed"
},
"protocols:RotateJumpAxisMoverTests:test_RotateJumpAxisMover_single": {
"log": "",
"state": "passed"
},
"protocols:RotateJumpAxisMoverTests:test_RotateJumpAxisMover_underspecified_jump": {
"log": "",
"state": "passed"
},
"protocols:SandwichFeaturesTests:test_main": {
"log": "",
"state": "passed"
},
"protocols:ScaffoldBuildPointTests:test_scaffold_build_point_ctor": {
"log": "",
"state": "passed"
},
"protocols:ScoreFileOutputterTests:test_output_path_handling_1": {
"log": "",
"state": "passed"
},
"protocols:ScoreFileOutputterTests:test_output_path_handling_2": {
"log": "",
"state": "passed"
},
"protocols:ScoreFileOutputterTests:test_output_path_handling_3": {
"log": "",
"state": "passed"
},
"protocols:ScoreFileOutputterTests:test_output_path_handling_4a": {
"log": "",
"state": "passed"
},
"protocols:ScoreFileOutputterTests:test_output_path_handling_4b": {
"log": "",
"state": "passed"
},
"protocols:ScoreFileOutputterTests:test_output_path_handling_5a": {
"log": "",
"state": "passed"
},
"protocols:ScoreFileOutputterTests:test_output_path_handling_5b": {
"log": "",
"state": "passed"
},
"protocols:ScoreFileOutputterTests:test_output_path_handling_6": {
"log": "",
"state": "passed"
},
"protocols:ScoreFileOutputterTests:test_output_path_handling_7": {
"log": "",
"state": "passed"
},
"protocols:ScoreFileOutputterTests:test_output_path_handling_8": {
"log": "",
"state": "passed"
},
"protocols:ScoreFileOutputterTests:test_output_path_handling_priority_1": {
"log": "",
"state": "passed"
},
"protocols:ScoreFileOutputterTests:test_output_path_handling_priority_2": {
"log": "",
"state": "passed"
},
"protocols:ScoreFileOutputterTests:test_output_path_handling_priority_3": {
"log": "",
"state": "passed"
},
"protocols:ScoreFileOutputterTests:test_output_path_handling_priority_4": {
"log": "",
"state": "passed"
},
"protocols:ScoreNormalizationTest:test_all_atom_normalization": {
"log": "",
"state": "passed"
},
"protocols:ScoreNormalizationTest:test_chi_angle_normalization": {
"log": "",
"state": "passed"
},
"protocols:ScoreNormalizationTest:test_get_score_normalization_function": {
"log": "",
"state": "passed"
},
"protocols:ScoreNormalizationTest:test_heavy_atom_normalization": {
"log": "",
"state": "passed"
},
"protocols:ScoreNormalizationTest:test_mol_weight_normalization": {
"log": "",
"state": "passed"
},
"protocols:ScoreTest:test_Score12": {
"log": "",
"state": "passed"
},
"protocols:ScoringGridLoaderTests:test_scoring_grid_loader_defines_valid_xsd": {
"log": "",
"state": "passed"
},
"protocols:Scs_functor_filtering_tests:test_filter_by_OCD": {
"log": "",
"state": "passed"
},
"protocols:Scs_functor_filtering_tests:test_filter_by_alignment_length": {
"log": "",
"state": "passed"
},
"protocols:Scs_functor_filtering_tests:test_filter_by_outlier": {
"log": "",
"state": "passed"
},
"protocols:Scs_functor_filtering_tests:test_filter_by_pdbid": {
"log": "",
"state": "passed"
},
"protocols:Scs_functor_filtering_tests:test_filter_by_proline": {
"log": "",
"state": "passed"
},
"protocols:Scs_functor_filtering_tests:test_filter_by_sequence_identity": {
"log": "",
"state": "passed"
},
"protocols:Scs_functor_filtering_tests:test_filter_by_sequence_length": {
"log": "",
"state": "passed"
},
"protocols:Scs_functor_filtering_tests:test_filter_by_template_bfactor": {
"log": "",
"state": "passed"
},
"protocols:Scs_functor_filtering_tests:test_filter_by_template_resolution": {
"log": "",
"state": "passed"
},
"protocols:SecondaryStructureFilterTests:test_convert_impossible_pairings": {
"log": "",
"state": "passed"
},
"protocols:SegmentInsertTests:test_C_side_connection_simple_internal": {
"log": "",
"state": "passed"
},
"protocols:SegmentInsertTests:test_C_side_connection_simple_internal_pure": {
"log": "",
"state": "passed"
},
"protocols:SegmentInsertTests:test_C_side_connection_simple_n_term": {
"log": "",
"state": "passed"
},
"protocols:SegmentInsertTests:test_N_side_connection_no_left_flanking_region": {
"log": "",
"state": "passed"
},
"protocols:SegmentInsertTests:test_N_side_connection_no_right_flanking_region": {
"log": "",
"state": "passed"
},
"protocols:SegmentInsertTests:test_N_side_connection_simple_c_term": {
"log": "",
"state": "passed"
},
"protocols:SegmentInsertTests:test_N_side_connection_simple_internal": {
"log": "",
"state": "passed"
},
"protocols:SegmentInsertTests:test_N_side_connection_simple_internal_pure": {
"log": "",
"state": "passed"
},
"protocols:SegmentPairingTests:test_bulge_strandpairing": {
"log": "",
"state": "passed"
},
"protocols:SegmentPairingTests:test_helix_pairing_str": {
"log": "",
"state": "passed"
},
"protocols:SegmentPairingTests:test_hss_triplet_str": {
"log": "",
"state": "passed"
},
"protocols:SegmentPairingTests:test_strand_pairing": {
"log": "",
"state": "passed"
},
"protocols:SegmentRebuildTests:test_continuous_segment_internal_contract": {
"log": "",
"state": "passed"
},
"protocols:SegmentRebuildTests:test_continuous_segment_internal_expand": {
"log": "",
"state": "passed"
},
"protocols:SegmentRebuildTests:test_continuous_segment_internal_identity": {
"log": "",
"state": "passed"
},
"protocols:SegmentRebuildTests:test_cut2_segment_contract": {
"log": "",
"state": "passed"
},
"protocols:SegmentRebuildTests:test_cut2_segment_expand": {
"log": "",
"state": "passed"
},
"protocols:SegmentRebuildTests:test_cut2_segment_identity": {
"log": "",
"state": "passed"
},
"protocols:SegmentRebuildTests:test_cut_segment_contract": {
"log": "",
"state": "passed"
},
"protocols:SegmentRebuildTests:test_cut_segment_expand": {
"log": "",
"state": "passed"
},
"protocols:SegmentRebuildTests:test_cut_segment_identity": {
"log": "",
"state": "passed"
},
"protocols:SegmentRebuildTests:test_multi_chain_cterm_chain1": {
"log": "",
"state": "passed"
},
"protocols:SegmentRebuildTests:test_multi_chain_cterm_chain2": {
"log": "",
"state": "passed"
},
"protocols:SegmentRebuildTests:test_multi_chain_nterm_chain1": {
"log": "",
"state": "passed"
},
"protocols:SegmentRebuildTests:test_multi_chain_nterm_chain2": {
"log": "",
"state": "passed"
},
"protocols:SegmentSequenceProfileTests:test_simple_profile": {
"log": "",
"state": "passed"
},
"protocols:SegmentSwapTests:test_continuous_complex_swap1": {
"log": "",
"state": "passed"
},
"protocols:SegmentSwapTests:test_continuous_complex_swap2": {
"log": "",
"state": "passed"
},
"protocols:SegmentSwapTests:test_continuous_swap": {
"log": "",
"state": "passed"
},
"protocols:SegmentTests:test_cutpoint_residues": {
"log": "",
"state": "passed"
},
"protocols:SegmentTests:test_motif_str_parse": {
"log": "",
"state": "passed"
},
"protocols:SegmentTests:test_numbering": {
"log": "",
"state": "passed"
},
"protocols:SegmentTests:test_segment_lookups": {
"log": "",
"state": "passed"
},
"protocols:SegmentedAtomPairConstraintGeneratorTests:test_constraints_defaults_allresidues": {
"log": "",
"state": "passed"
},
"protocols:SegmentedAtomPairConstraintGeneratorTests:test_constraints_defaults_inner": {
"log": "",
"state": "passed"
},
"protocols:SegmentedAtomPairConstraintGeneratorTests:test_constraints_defaults_outer": {
"log": "",
"state": "passed"
},
"protocols:SequenceRecoveryMetricTests:test_average": {
"log": "",
"state": "passed"
},
"protocols:SequenceRecoveryMetricTests:test_basic": {
"log": "",
"state": "passed"
},
"protocols:SequenceRecoveryMetricTests:test_delta": {
"log": "",
"state": "passed"
},
"protocols:SequenceRecoveryMetricTests:test_pssm": {
"log": "",
"state": "passed"
},
"protocols:SequenceRecoveryMetricTests:test_subsection": {
"log": "",
"state": "passed"
},
"protocols:SetMembranePositionTest:test_membrane_position_rotation": {
"log": "",
"state": "passed"
},
"protocols:SetMembranePositionTest:test_membrane_position_translation": {
"log": "",
"state": "passed"
},
"protocols:SetMembranePositionTest:test_uniform_rotation_translation": {
"log": "",
"state": "passed"
},
"protocols:SetSecStructEnergiesMoverTests:test_modify_score_function": {
"log": "",
"state": "passed"
},
"protocols:SetupDockingFoldTree:test_autodetct_vs_specifing_first_jump": {
"log": "",
"state": "passed"
},
"protocols:SetupDockingFoldTree:test_residue_selector_based_setup": {
"log": "",
"state": "passed"
},
"protocols:SetupMetalsMoverTests:test_contact_selection": {
"log": "",
"state": "passed"
},
"protocols:SetupMetalsMoverTests:test_default_options": {
"log": "",
"state": "passed"
},
"protocols:SetupMetalsMoverTests:test_parse_invalid_tag": {
"log": "",
"state": "passed"
},
"protocols:SetupMetalsMoverTests:test_parse_tag_all_metals": {
"log": "",
"state": "passed"
},
"protocols:SetupMetalsMoverTests:test_parse_tag_named_selector": {
"log": "",
"state": "passed"
},
"protocols:SetupMetalsMoverTests:test_parse_tag_resnum_list": {
"log": "",
"state": "passed"
},
"protocols:SewAnythingTests:test_empty": {
"log": "",
"state": "passed"
},
"protocols:SewingHasherTests:test_5_ss_model_generation_from_db": {
"log": "",
"state": "passed"
},
"protocols:SewingHasherTests:test_key_generation": {
"log": "",
"state": "passed"
},
"protocols:SewingHasherTests:test_scoring": {
"log": "",
"state": "passed"
},
"protocols:SewingHasherTests:test_serialization": {
"log": "",
"state": "passed"
},
"protocols:SewingHasherTests:test_transform_coords": {
"log": "",
"state": "passed"
},
"protocols:ShearMoverTest:test_ShearMover": {
"log": "",
"state": "passed"
},
"protocols:ShearMoverTest:test_ShearMover_w_sugar": {
"log": "",
"state": "passed"
},
"protocols:ShearMoverTest:test_one_shear_move": {
"log": "",
"state": "passed"
},
"protocols:SheetConstraintGeneratorTests:test_bulge_strandpairing": {
"log": "",
"state": "passed"
},
"protocols:SheetConstraintGeneratorTests:test_spair_strings": {
"log": "",
"state": "passed"
},
"protocols:SheetConstraintGeneratorTests:test_user_secstruct": {
"log": "",
"state": "passed"
},
"protocols:SheetTopologyFilterTest:test_bad_topology": {
"log": "",
"state": "passed"
},
"protocols:SheetTopologyFilterTest:test_residue_count_no_rgstr_shift": {
"log": "",
"state": "passed"
},
"protocols:ShowConstraintsFilterTests:test_it_accepts_a_pose_with_constraints": {
"log": "",
"state": "passed"
},
"protocols:ShowConstraintsFilterTests:test_it_accepts_a_pose_with_no_constraints": {
"log": "",
"state": "passed"
},
"protocols:SilentFilePoseInputterTests:test_read_in_file_silent_flag": {
"log": "",
"state": "passed"
},
"protocols:SilentFilePoseInputterTests:test_read_in_from_cmdline_without_pose_input_sources_call": {
"log": "",
"state": "passed"
},
"protocols:SilentFilePoseOutputterTests:test_output_path_handling_1a": {
"log": "",
"state": "passed"
},
"protocols:SilentFilePoseOutputterTests:test_output_path_handling_1b": {
"log": "",
"state": "passed"
},
"protocols:SilentFilePoseOutputterTests:test_output_path_handling_1c": {
"log": "",
"state": "passed"
},
"protocols:SilentFilePoseOutputterTests:test_output_path_handling_2": {
"log": "",
"state": "passed"
},
"protocols:SilentFilePoseOutputterTests:test_output_path_handling_3": {
"log": "",
"state": "passed"
},
"protocols:SilentFilePoseOutputterTests:test_output_path_handling_4": {
"log": "",
"state": "passed"
},
"protocols:SilentFilePoseOutputterTests:test_output_path_handling_5": {
"log": "",
"state": "passed"
},
"protocols:SilentFilePoseOutputterTests:test_output_path_handling_6": {
"log": "",
"state": "passed"
},
"protocols:SilentFilePoseOutputterTests:test_output_path_handling_7": {
"log": "",
"state": "passed"
},
"protocols:SilentFilePoseOutputterTests:test_output_path_handling_priority_1": {
"log": "",
"state": "passed"
},
"protocols:SilentFilePoseOutputterTests:test_output_path_handling_with_tag": {
"log": "",
"state": "passed"
},
"protocols:SimpleCycpepPredictApplicationTests:test_designfile_read": {
"log": "",
"state": "passed"
},
"protocols:SimpleCycpepPredictApplicationTests:test_mergesort": {
"log": "",
"state": "passed"
},
"protocols:SimpleCycpepPredictApplicationTests:test_mergesort_edgecases": {
"log": "",
"state": "passed"
},
"protocols:SimpleCycpepPredictApplicationTests:test_mergesort_rmsd": {
"log": "",
"state": "passed"
},
"protocols:SimpleCycpepPredictApplicationTests:test_quicksort": {
"log": "",
"state": "passed"
},
"protocols:SimpleCycpepPredictApplicationTests:test_quicksort_cis_peptide_bonds": {
"log": "",
"state": "passed"
},
"protocols:SimpleCycpepPredictApplicationTests:test_quicksort_rmsd": {
"log": "",
"state": "passed"
},
"protocols:SimpleCycpepPredictApplicationTests:test_simple_cycpep_predict": {
"log": "",
"state": "passed"
},
"protocols:SimpleCycpepPredictApplication_betanov15_Tests:test_simple_cycpep_predict": {
"log": "",
"state": "passed"
},
"protocols:SimpleCycpepPredictApplication_design_Tests:test_simple_cycpep_predict": {
"log": "",
"state": "passed"
},
"protocols:SimpleCycpepPredictApplication_design_Tests:test_simple_cycpep_predict_withfile": {
"log": "",
"state": "passed"
},
"protocols:SimpleCycpepPredictApplication_design_betanov15_Tests:test_simple_cycpep_predict": {
"log": "",
"state": "passed"
},
"protocols:SimpleCycpepPredictApplication_design_betanov15_Tests:test_simple_cycpep_predict_withfile": {
"log": "",
"state": "passed"
},
"protocols:SimpleMetricProtocolsTests:test_composite_real_metric": {
"log": "",
"state": "passed"
},
"protocols:SimpleMetricProtocolsTests:test_composite_string_metric": {
"log": "",
"state": "passed"
},
"protocols:SimpleMetricProtocolsTests:test_composite_total_energy_metric": {
"log": "",
"state": "passed"
},
"protocols:SimpleMetricProtocolsTests:test_dihedral_metric": {
"log": "",
"state": "passed"
},
"protocols:SimpleMetricProtocolsTests:test_protocol_settings_metric": {
"log": "",
"state": "passed"
},
"protocols:SimpleMetricProtocolsTests:test_real_metric": {
"log": "",
"state": "passed"
},
"protocols:SimpleMetricProtocolsTests:test_rmsd_metric": {
"log": "",
"state": "passed"
},
"protocols:SimpleMetricProtocolsTests:test_string_metric": {
"log": "",
"state": "passed"
},
"protocols:SimpleMetricProtocolsTests:test_total_energy_metric": {
"log": "",
"state": "passed"
},
"protocols:SimpleThreadingMoverTests:test_basename": {
"log": "",
"state": "passed"
},
"protocols:SimpleThreadingMoverTests:test_basic_class": {
"log": "",
"state": "passed"
},
"protocols:SimpleThreadingMoverTests:test_fullname": {
"log": "",
"state": "passed"
},
"protocols:SimpleThreadingMoverTests:test_oneletter": {
"log": "",
"state": "passed"
},
"protocols:SimpleThreadingMoverTests:test_threeletter": {
"log": "",
"state": "passed"
},
"protocols:SiteGridTests:test_score_function": {
"log": "",
"state": "passed"
},
"protocols:SixDoFGridDockMoverTests:test_lex_position": {
"log": "",
"state": "passed"
},
"protocols:SixDoFGridDockMoverTests:test_parse_range": {
"log": "",
"state": "passed"
},
"protocols:SixDoFGridDockMoverTests:test_pdb_geometries": {
"log": "",
"state": "passed"
},
"protocols:SixDoFGridDockMoverTests:test_xyz_orthogonality": {
"log": "",
"state": "passed"
},
"protocols:SmallMoverTest:test_SmallMover": {
"log": "",
"state": "passed"
},
"protocols:SmallMoverTest:test_SmallMover_w_sugar": {
"log": "",
"state": "passed"
},
"protocols:SmallMoverTest:test_one_small_move": {
"log": "",
"state": "passed"
},
"protocols:SmallMoverTests:test_perturb_oligourea": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_assemblies_are_continuous": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_auto_detect_contacts": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_basis_pair_calculations_recursive_unchimerize_c_term": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_basis_pair_calculations_recursive_unchimerize_n_term": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_can_make_chimera1": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_can_make_chimera2": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_can_make_chimera3": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_do_not_delete_vital_segments_cterm": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_do_not_delete_vital_segments_nterm": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_do_not_hash_the_unhashable": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_double_chimerize_single_helix_two_triplets_cterm_first": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_double_chimerize_single_helix_two_triplets_nterm_first": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_double_unchimerize_single_helix_two_triplets_cterm": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_double_unchimerize_single_helix_two_triplets_nterm": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_iterate_over_basis_pairs_basic": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_iterate_over_basis_pairs_chimaera_cterm_first": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_iterate_over_basis_pairs_chimaera_nterm_first": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_maintain_contact_cterm_chimerization": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_maintain_contact_double_chimerization_cterm_first": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_maintain_contact_double_chimerization_nterm_first": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_maintain_contact_nterm_chimerization": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_maintain_contact_recurse_revert_cterm": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_maintain_contact_recurse_revert_nterm": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_maintain_contact_unchimerize_cterm": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_maintain_contact_unchimerize_nterm": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_reverting_double_unchimerize_cterm": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_reverting_double_unchimerize_nterm": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_set_starting_segment": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_simple_assembly_length": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_simple_assembly_parent_connectivity": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_simple_assembly_size": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_simple_delete_cterm": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_simple_delete_nterm": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_simple_switch_cterm": {
"log": "",
"state": "passed"
},
"protocols:SmartAssemblyTests:test_simple_switch_nterm": {
"log": "",
"state": "passed"
},
"protocols:SnugDockProtocol_setup_ab_ag_foldtree_tests:test_place_VRT_at_residue_COM": {
"log": "",
"state": "passed"
},
"protocols:SnugDockProtocol_setup_ab_ag_foldtree_tests:test_setup_ab_ag_foldtree": {
"log": "",
"state": "passed"
},
"protocols:SpartaTest:test_ANN_INPUT": {
"log": "",
"state": "passed"
},
"protocols:SpartaTest:test_ANN_PARAMETERS": {
"log": "",
"state": "passed"
},
"protocols:SpartaTest:test_BLOSUM62": {
"log": "",
"state": "passed"
},
"protocols:SpartaTest:test_PDB": {
"log": "",
"state": "passed"
},
"protocols:SpartaTest:test_PRED_SUM": {
"log": "",
"state": "passed"
},
"protocols:SpartaTest:test_scores": {
"log": "",
"state": "passed"
},
"protocols:SpartaTest:test_sparta_foldit": {
"log": "",
"state": "passed"
},
"protocols:SpinAroundPartnerMoverTest:test_constructor_from_jumpnum": {
"log": "",
"state": "passed"
},
"protocols:SpinAroundPartnerMoverTest:test_spinaroundpartner_parse_my_tag_input": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenOverrideInputterTests:test_sjq_add_unregistered_inputter_read_cl": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenOverrideInputterTests:test_sjq_add_unregistered_inputter_read_jobdef_file": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenOverrideInputterTests:test_sjq_add_unregistered_inputter_read_jobdef_file2": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenOverrideInputterTests:test_sjq_add_unregistered_inputter_xsd_correct": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenOverrideInputterTests:test_sjq_allow_only_non_factory_registered_inputter_read_cl": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenOverrideInputterTests:test_sjq_allow_only_non_factory_registered_inputter_read_jobdef_file": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenOverrideInputterTests:test_sjq_allow_only_non_factory_registered_inputter_read_jobdef_file_bad_inputter": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenOverrideInputterTests:test_sjq_allow_only_non_factory_registered_inputter_xsd_correct": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenOverrideOutputterTests:test_sjq_add_unregistered_outputter_read_cl_get_default_outputter": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenOverrideOutputterTests:test_sjq_add_unregistered_outputter_read_cl_get_requested_dummy_outputter": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenOverrideOutputterTests:test_sjq_allow_only_non_factory_registered_outputter_read_cl": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenOverrideOutputterTests:test_sjq_allow_only_non_factory_registered_outputter_read_jobdef_file": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenOverrideOutputterTests:test_sjq_allow_only_non_factory_registered_outputter_read_jobdef_file_bad_outputter": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenTests:test_job_definition_file_xsd": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenTests:test_job_options_initialization": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenTests:test_preliminary_job_node_job_index_ranges": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenTests:test_read_jobs_from_xml_file": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenTests:test_read_jobs_from_xml_file2": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenTests:test_sjq_remote_node_mature_larval_job": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenTests:test_standard_job_queen_pose_deallocation_messages": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenTests:test_standard_job_queen_pose_deallocation_messages_and_preserve_input_poses": {
"log": "",
"state": "passed"
},
"protocols:StandardJobQueenTests:test_standard_job_queen_pose_deallocation_messages_no_preserve_poses": {
"log": "",
"state": "passed"
},
"protocols:StandardPoseJobSummaryTests:test_basic_pose_job_summary": {
"log": "",
"state": "passed"
},
"protocols:StartFromTests:test_PDB_file": {
"log": "",
"state": "passed"
},
"protocols:StartFromTests:test_PDB_file_atom_name": {
"log": "",
"state": "passed"
},
"protocols:StartFromTests:test_hash_tag": {
"log": "",
"state": "passed"
},
"protocols:StartFromTests:test_json_file": {
"log": "",
"state": "passed"
},
"protocols:StartFromTests:test_multiple_positions": {
"log": "",
"state": "passed"
},
"protocols:StartFromTests:test_pdb_tag": {
"log": "",
"state": "passed"
},
"protocols:StartFromTests:test_specified_position": {
"log": "",
"state": "passed"
},
"protocols:StartFromTests:test_specified_position_nbr": {
"log": "",
"state": "passed"
},
"protocols:StartFromTests:test_spurious_items": {
"log": "",
"state": "passed"
},
"protocols:StepWiseMinimizerTest:test_num_pose_minimize": {
"log": "",
"state": "passed"
},
"protocols:StepWiseMonteCarloTest:test_force_submotif_without_intervening_bulge": {
"log": "",
"state": "passed"
},
"protocols:StepWiseMonteCarloTest:test_skip_preminimize": {
"log": "",
"state": "passed"
},
"protocols:StepWiseMoveSelectorTest:test_reverse_of_FROM_SCRATCH_move": {
"log": "",
"state": "passed"
},
"protocols:StepWiseMoveSelectorTest:test_submotif_split": {
"log": "",
"state": "passed"
},
"protocols:StepWisePoseAlignerTest:test_rna_dna_match": {
"log": "",
"state": "passed"
},
"protocols:StepWisePoseAlignerTest:test_superimpose_res_in_root_partition": {
"log": "",
"state": "passed"
},
"protocols:StochasticFilterTests:test_apply": {
"log": "",
"state": "passed"
},
"protocols:StochasticFilterTests:test_subfilter_apply_false": {
"log": "",
"state": "passed"
},
"protocols:StochasticFilterTests:test_subfilter_apply_true": {
"log": "",
"state": "passed"
},
"protocols:StoredResidueSubsetSelectorTests:test_StoreResidueSubsetMover_parse_my_tag": {
"log": "",
"state": "passed"
},
"protocols:StoredResidueSubsetSelectorTests:test_StoredResidueSubsetSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"protocols:StoredResidueSubsetSelectorTests:test_store_and_retrieve_subset": {
"log": "",
"state": "passed"
},
"protocols:StructureDataFactoryTests:test_silent_io": {
"log": "",
"state": "passed"
},
"protocols:StructureDataFactoryTests:test_structuredata_io": {
"log": "",
"state": "passed"
},
"protocols:StructureDataFactoryTests:test_symmetry": {
"log": "",
"state": "passed"
},
"protocols:StructureDataFactoryTests:test_xml_io": {
"log": "",
"state": "passed"
},
"protocols:StructureDataObserverTests:test_attachment": {
"log": "",
"state": "passed"
},
"protocols:StructureDataObserverTests:test_residue_deletion": {
"log": "",
"state": "passed"
},
"protocols:StructureDataTests:test_delete_segment": {
"log": "",
"state": "passed"
},
"protocols:StructureDataTests:test_enzdes_remarks": {
"log": "",
"state": "passed"
},
"protocols:StructureDataTests:test_move_segments": {
"log": "",
"state": "passed"
},
"protocols:StructureDataTests:test_non_peptidic_bonds": {
"log": "",
"state": "passed"
},
"protocols:StructureDataTests:test_slice": {
"log": "",
"state": "passed"
},
"protocols:StructureStoreTests:test_convert_stores": {
"log": "",
"state": "passed"
},
"protocols:StructureStoreTests:test_read_h5_store": {
"log": "",
"state": "passed"
},
"protocols:StructureStoreTests:test_read_stores": {
"log": "",
"state": "passed"
},
"protocols:StructureStoreTests:test_store_cache": {
"log": "",
"state": "passed"
},
"protocols:SurfaceVectorLoaderTest:test_create_SurfaceParameters_from_SurfaceVectorLoader": {
"log": "",
"state": "passed"
},
"protocols:SwitchChainOrderMoverTests:test_pdbinfo_labels": {
"log": "",
"state": "passed"
},
"protocols:SymmetricAddMembraneMoverTest:test_appropriate_foldtree": {
"log": "",
"state": "passed"
},
"protocols:SymmetricAddMembraneMoverTest:test_membrane_jump_tracking": {
"log": "",
"state": "passed"
},
"protocols:SymmetricAddMembraneMoverTest:test_preserved_symmetry": {
"log": "",
"state": "passed"
},
"protocols:SymmetricAddMembraneMoverTest:test_symm_add_postconditions": {
"log": "",
"state": "passed"
},
"protocols:SymmetricCycpepAlignTests:test_align_c4m_to_origin": {
"log": "",
"state": "passed"
},
"protocols:SymmetricCycpepAlignTests:test_align_c4m_to_zaxis": {
"log": "",
"state": "passed"
},
"protocols:SymmetricCycpepAlignTests:test_detect_asymm": {
"log": "",
"state": "passed"
},
"protocols:SymmetricCycpepAlignTests:test_detect_c3_symmetry_tbmb": {
"log": "",
"state": "passed"
},
"protocols:SymmetricCycpepAlignTests:test_detect_c4m_symmetry": {
"log": "",
"state": "passed"
},
"protocols:SymmetricCycpepAlignTests:test_trim_c3_tbmb_to_repeat_two": {
"log": "",
"state": "passed"
},
"protocols:SymmetricCycpepAlignTests:test_trim_c4m_to_repeat_two": {
"log": "",
"state": "passed"
},
"protocols:TCRmodelGraftingTests:test_tcr_grafting": {
"log": "",
"state": "passed"
},
"protocols:TCRmodelSeqParserTests:test_tcr_seq_parsing": {
"log": "",
"state": "passed"
},
"protocols:TaskAwareMinMoverTests:test_TaskAwareMinMover": {
"log": "",
"state": "passed"
},
"protocols:TaskSelectorTests:test_TaskSelector_parse_my_tag": {
"log": "",
"state": "passed"
},
"protocols:TautomerizeAnomerMoverTests:test_TautomerizeAnomerMover": {
"log": "",
"state": "passed"
},
"protocols:TestCCDLoopClosureMover:test_CCDLoopClosureMover_closes": {
"log": "",
"state": "passed"
},
"protocols:TestCCDLoopClosureMover:test_CCDLoopClosureMover_copy_ctor": {
"log": "",
"state": "passed"
},
"protocols:TestCCDLoopClosureMover:test_CCDLoopClosureMover_exceptions": {
"log": "",
"state": "passed"
},
"protocols:TestCCDLoopClosureMover:test_CCDLoopClosureMover_mover_factory": {
"log": "",
"state": "passed"
},
"protocols:Thioether_Helper_Tests:test_build_ala_thioether": {
"log": "",
"state": "passed"
},
"protocols:Thioether_Helper_Tests:test_build_b3a_thioether": {
"log": "",
"state": "passed"
},
"protocols:Thioether_Helper_Tests:test_build_gly_thioether": {
"log": "",
"state": "passed"
},
"protocols:ThreadingMover_Tests:test_basic_threading": {
"log": "",
"state": "passed"
},
"protocols:TiltMoverTest:test_constructor_from_jumpnum_and_angle": {
"log": "",
"state": "passed"
},
"protocols:TiltMoverTest:test_tiltmover_parse_my_tag_input": {
"log": "",
"state": "passed"
},
"protocols:TorsionBinIOTests:test_read_file": {
"log": "",
"state": "passed"
},
"protocols:TorsionSamplingKinematicPerturberTests:test_TorsionSamplingKinematicPerturber": {
"log": "",
"state": "passed"
},
"protocols:TotalSasaFilterTests:test_calc_per_res_hydrophobic_sasa": {
"log": "",
"state": "passed"
},
"protocols:TotalSasaFilterTests:test_calc_total_sasa_glycine": {
"log": "",
"state": "passed"
},
"protocols:TotalSasaFilterTests:test_calc_total_sasa_smallprotein": {
"log": "",
"state": "passed"
},
"protocols:TransformIntoMembraneMoverTest:test_constructor_from_embedding": {
"log": "",
"state": "passed"
},
"protocols:TransformIntoMembraneMoverTest:test_constructor_from_embedding_and_membrane": {
"log": "",
"state": "passed"
},
"protocols:TransformIntoMembraneMoverTest:test_helix_to_normal_angle": {
"log": "",
"state": "passed"
},
"protocols:TransformIntoMembraneMoverTest:test_transform_into_default_membrane": {
"log": "",
"state": "passed"
},
"protocols:TransformIntoMembraneMoverTest:test_transform_into_userdefined_membrane": {
"log": "",
"state": "passed"
},
"protocols:TransformTests:test_conformer_change": {
"log": "",
"state": "passed"
},
"protocols:TransformTests:test_randomize_ligand": {
"log": "",
"state": "passed"
},
"protocols:TransformTests:test_score_constraints": {
"log": "",
"state": "passed"
},
"protocols:TranslationRotationMoverTest:test_rotation": {
"log": "",
"state": "passed"
},
"protocols:TranslationRotationMoverTest:test_rotation_translation": {
"log": "",
"state": "passed"
},
"protocols:TranslationRotationMoverTest:test_translation": {
"log": "",
"state": "passed"
},
"protocols:TypesetMoversTests:test_TypesetMovers": {
"log": "",
"state": "passed"
},
"protocols:UniformRigidBody:test_uniform_rb": {
"log": "",
"state": "passed"
},
"protocols:VarSolDRotamerDotsTest:test_radii_setting": {
"log": "",
"state": "passed"
},
"protocols:VarSolDRotamerDotsTest:test_residue_pair_overlap": {
"log": "",
"state": "passed"
},
"protocols:VarSolDRotamerDotsTest:test_self_overlap": {
"log": "",
"state": "passed"
},
"protocols:VarSolDRotamerDotsTest:test_shells_evenly_spaced": {
"log": "",
"state": "passed"
},
"protocols:VicinitySamplingKinematicPerturberTests:test_VicinitySamplingKinematicPerturber": {
"log": "",
"state": "passed"
},
"protocols:VoxelSetIteratorTests:test_bounding_box_edge_x": {
"log": "",
"state": "passed"
},
"protocols:VoxelSetIteratorTests:test_bounding_box_edge_y": {
"log": "",
"state": "passed"
},
"protocols:VoxelSetIteratorTests:test_bounding_box_edge_z": {
"log": "",
"state": "passed"
},
"protocols:VoxelSetIteratorTests:test_center_iteration": {
"log": "",
"state": "passed"
},
"protocols:VoxelSetIteratorTests:test_center_iterations_pos": {
"log": "",
"state": "passed"
},
"protocols:VoxelSetIteratorTests:test_wrap_phi_at_360": {
"log": "",
"state": "passed"
},
"protocols:VoxelSetIteratorTests:test_wrap_psi_at_360": {
"log": "",
"state": "passed"
},
"protocols:VoxelSetIteratorTests:test_wrap_theta_at_0": {
"log": "",
"state": "passed"
},
"protocols:VoxelSetIteratorTests:test_wrap_theta_at_180": {
"log": "",
"state": "passed"
},
"protocols:WindowPoseCompMotifMetricTests:test_WPCMM": {
"log": "",
"state": "passed"
},
"protocols:WobbleMoverTest:test_wobble": {
"log": "",
"state": "passed"
},
"protocols:XmlObjectsTests:test_file_instantiation": {
"log": "",
"state": "passed"
},
"protocols:XmlObjectsTests:test_includes": {
"log": "",
"state": "passed"
},
"protocols:XmlObjectsTests:test_parsed_protocol": {
"log": "",
"state": "passed"
},
"protocols:XmlObjectsTests:test_static_instantiation_filter": {
"log": "",
"state": "passed"
},
"protocols:XmlObjectsTests:test_static_instantiation_mover": {
"log": "",
"state": "passed"
},
"protocols:XmlObjectsTests:test_static_instantiation_residue_selector": {
"log": "",
"state": "passed"
},
"protocols:XmlObjectsTests:test_static_instantiation_score_function": {
"log": "",
"state": "passed"
},
"protocols:XmlObjectsTests:test_static_instantiation_simple_metric": {
"log": "",
"state": "passed"
},
"protocols:XmlObjectsTests:test_static_instantiation_taskop": {
"log": "",
"state": "passed"
},
"protocols:XmlObjectsTests:test_string_instantiation": {
"log": "",
"state": "passed"
},
"protocols:cout_io:test_cout_io": {
"log": "",
"state": "passed"
},
"protocols:ddG:test_chains_to_move_invert": {
"log": "",
"state": "passed"
},
"protocols:ddG:test_filter_parsing_dimer": {
"log": "",
"state": "passed"
},
"protocols:ddG:test_filter_parsing_monomer": {
"log": "",
"state": "passed"
},
"protocols:ddG:test_use_filter_dimer": {
"log": "",
"state": "passed"
},
"protocols:ddG:test_use_filter_monomer": {
"log": "",
"state": "passed"
},
"protocols:fold_tree_functions_Tests:test_remove_cutpoints": {
"log": "",
"state": "passed"
},
"protocols:hybridization_TMalign_Tests:test_align_pose1_onto_pose2": {
"log": "",
"state": "passed"
},
"protocols:orphan_restypes_tests:test_cartmin_restype_noset": {
"log": "",
"state": "passed"
},
"protocols:orphan_restypes_tests:test_load_restype_noset": {
"log": "",
"state": "passed"
},
"protocols:orphan_restypes_tests:test_min_restype_noset": {
"log": "",
"state": "passed"
},
"protocols:orphan_restypes_tests:test_pack_restype_noset": {
"log": "",
"state": "passed"
},
"protocols:orphan_restypes_tests:test_score_restype_noset": {
"log": "",
"state": "passed"
},
"protocols:pHVariantTaskOperationTest:test_pHVariantTaskOp": {
"log": "",
"state": "passed"
},
"protocols:packer_palette_compatibility_global_tests:test_different_interchange_group": {
"log": "",
"state": "passed"
},
"protocols:packer_palette_compatibility_global_tests:test_same_interchange_group": {
"log": "",
"state": "passed"
},
"protocols:packer_palette_compatibility_tests:test_inpose_custom_palette": {
"log": "",
"state": "passed"
},
"protocols:packer_palette_compatibility_tests:test_inpose_different_interchange_group": {
"log": "",
"state": "passed"
},
"protocols:packer_palette_compatibility_tests:test_inpose_highresdocker": {
"log": "",
"state": "passed"
},
"protocols:packer_palette_compatibility_tests:test_inpose_same_interchange_group": {
"log": "",
"state": "passed"
},
"protocols:packer_palette_compatibility_tests:test_orphan_different_interchange_group": {
"log": "",
"state": "passed"
},
"protocols:packer_palette_compatibility_tests:test_orphan_same_interchange_group": {
"log": "",
"state": "passed"
},
"protocols:stepwise_modeler_rna_util_test:test_virtualize_free_rna_moieties": {
"log": "",
"state": "passed"
},
"utility:ArrayPoolTests:test_allocate_one_array": {
"log": "",
"state": "passed"
},
"utility:ArrayPoolTests:test_allocate_one_block": {
"log": "",
"state": "passed"
},
"utility:ArrayPoolTests:test_allocate_two_blocks": {
"log": "",
"state": "passed"
},
"utility:ArrayPoolTests:test_pool_1argument_ctor": {
"log": "",
"state": "passed"
},
"utility:ArrayPoolTests:test_pool_2argument_ctor": {
"log": "",
"state": "passed"
},
"utility:ArrayPoolTests:test_pool_default_ctor": {
"log": "",
"state": "passed"
},
"utility:ArrayPoolTests:test_reuse_space": {
"log": "",
"state": "passed"
},
"utility:AutoKeyTests:test_AutoKey_general": {
"log": "",
"state": "passed"
},
"utility:BinaryUtilTests:test_decode6bit_avoid_buffer_overrun": {
"log": "",
"state": "passed"
},
"utility:BitSetTests:test_BitSet_assignment": {
"log": "",
"state": "passed"
},
"utility:BitSetTests:test_BitSet_constructor": {
"log": "",
"state": "passed"
},
"utility:BitSetTests:test_BitSet_method": {
"log": "",
"state": "passed"
},
"utility:BitVectorTests:test_BitVector_assignment": {
"log": "",
"state": "passed"
},
"utility:BitVectorTests:test_BitVector_constructor": {
"log": "",
"state": "passed"
},
"utility:BitVectorTests:test_BitVector_method": {
"log": "",
"state": "passed"
},
"utility:BufferedSignalHubTests:test_BufferedSignalHub_buffering": {
"log": "",
"state": "passed"
},
"utility:DatabaseSessionManagerTests:test_cppdb_interface": {
"log": "",
"state": "passed"
},
"utility:DatabaseSessionManagerTests:test_db_session": {
"log": "",
"state": "passed"
},
"utility:DatabaseSessionManagerTests:test_multiple_selections": {
"log": "",
"state": "passed"
},
"utility:DatingUtilitiesTests:test_get_current_date": {
"log": "",
"state": "passed"
},
"utility:DeepCopyOPTests:test_conversion": {
"log": "",
"state": "passed"
},
"utility:DeepCopyOPTests:test_copying": {
"log": "",
"state": "passed"
},
"utility:DeepCopyVector1Tests:test_assignment": {
"log": "",
"state": "passed"
},
"utility:DeepCopyVector1Tests:test_construct": {
"log": "",
"state": "passed"
},
"utility:DeepCopyVector1Tests:test_copying": {
"log": "",
"state": "passed"
},
"utility:DeepCopyVector1Tests:test_move_semantics": {
"log": "",
"state": "passed"
},
"utility:DenseBoolMapTests:test_dense_bool_map": {
"log": "",
"state": "passed"
},
"utility:DisjointSetsTests:test_disjoint_sets_example1": {
"log": "",
"state": "passed"
},
"utility:FactoryTests:test_Factory_general": {
"log": "",
"state": "passed"
},
"utility:FileContentsMapTests:test_FileContentsMap_delete_contents_at_nread_limit_1_read": {
"log": "",
"state": "passed"
},
"utility:FileContentsMapTests:test_FileContentsMap_delete_contents_at_nread_limit_2_read": {
"log": "",
"state": "passed"
},
"utility:FileContentsMapTests:test_FileContentsMap_get_file_contents": {
"log": "",
"state": "passed"
},
"utility:FileContentsMapTests:test_FileContentsMap_get_file_contents_ref": {
"log": "",
"state": "passed"
},
"utility:FileContentsMapTests:test_FileContentsMap_refuse_file_failure": {
"log": "",
"state": "passed"
},
"utility:FileContentsMapTests:test_FileContentsMap_refuse_file_success": {
"log": "",
"state": "passed"
},
"utility:FileNameTests:test_path": {
"log": "",
"state": "passed"
},
"utility:FileNameTests:test_vol": {
"log": "",
"state": "passed"
},
"utility:FileSysUtilTests:test_create_directory_recursive": {
"log": "",
"state": "passed"
},
"utility:GraphTests:test_add_edge": {
"log": "",
"state": "passed"
},
"utility:GraphTests:test_copy_constructor": {
"log": "",
"state": "passed"
},
"utility:GraphTests:test_drop_all_edges_for_node": {
"log": "",
"state": "passed"
},
"utility:GraphTests:test_find_edge": {
"log": "",
"state": "passed"
},
"utility:GraphTests:test_get_node": {
"log": "",
"state": "passed"
},
"utility:GraphTests:test_loops": {
"log": "",
"state": "passed"
},
"utility:GraphTests:test_memory_usage": {
"log": "",
"state": "passed"
},
"utility:GraphTests:test_num_neighbors_including_self": {
"log": "",
"state": "passed"
},
"utility:GraphTests:test_operator_assignment": {
"log": "",
"state": "passed"
},
"utility:GraphTests:test_serialize_graph": {
"log": "",
"state": "passed"
},
"utility:GraphTests:test_serialize_graph_pointer": {
"log": "",
"state": "passed"
},
"utility:GraphTests:test_set_num_nodes": {
"log": "",
"state": "passed"
},
"utility:IZStreamTests:test_alternate_paths": {
"log": "",
"state": "passed"
},
"utility:IZStreamTests:test_getline": {
"log": "",
"state": "passed"
},
"utility:IZStreamTests:test_izstream_directory_read": {
"log": "",
"state": "passed"
},
"utility:IZStreamTests:test_izstream_read_from_zipped_file": {
"log": "",
"state": "passed"
},
"utility:IterUtilTest:test_find_closest_largest": {
"log": "",
"state": "passed"
},
"utility:IterUtilTest:test_find_closest_rounding": {
"log": "",
"state": "passed"
},
"utility:IterUtilTest:test_find_closest_smallest": {
"log": "",
"state": "passed"
},
"utility:IterUtilTest:test_find_closest_value_excluded": {
"log": "",
"state": "passed"
},
"utility:IterUtilTest:test_find_closest_value_included": {
"log": "",
"state": "passed"
},
"utility:Key4TupleTests:test_Key4Tuple_general": {
"log": "",
"state": "passed"
},
"utility:Key4VectorTests:test_Key4Vector_general": {
"log": "",
"state": "passed"
},
"utility:KeyMapTests:test_ClassKeyMap_general": {
"log": "",
"state": "passed"
},
"utility:KeyMapTests:test_ClassKeyMap_swap": {
"log": "",
"state": "passed"
},
"utility:KeyVectorTests:test_ClassKeyVector_int": {
"log": "",
"state": "passed"
},
"utility:KeyVectorTests:test_ClassKeyVector_long": {
"log": "",
"state": "passed"
},
"utility:KeyVectorTests:test_ClassKeyVector_swap": {
"log": "",
"state": "passed"
},
"utility:LexicographicalIteratorTests:test_FixedSizeLexicographicalIterator_at_end": {
"log": "",
"state": "passed"
},
"utility:LexicographicalIteratorTests:test_FixedSizeLexicographicalIterator_constructor": {
"log": "",
"state": "passed"
},
"utility:LexicographicalIteratorTests:test_FixedSizeLexicographicalIterator_continue_at_dim": {
"log": "",
"state": "passed"
},
"utility:LexicographicalIteratorTests:test_FixedSizeLexicographicalIterator_increment": {
"log": "",
"state": "passed"
},
"utility:LexicographicalIteratorTests:test_FixedSizeLexicographicalIterator_num_states_total": {
"log": "",
"state": "passed"
},
"utility:LexicographicalIteratorTests:test_FixedSizeLexicographicalIterator_reset_state": {
"log": "",
"state": "passed"
},
"utility:LexicographicalIteratorTests:test_FixedSizeLexicographicalIterator_set_dim_sizes": {
"log": "",
"state": "passed"
},
"utility:LexicographicalIteratorTests:test_LexicographicalIterator_at_end": {
"log": "",
"state": "passed"
},
"utility:LexicographicalIteratorTests:test_LexicographicalIterator_constructor": {
"log": "",
"state": "passed"
},
"utility:LexicographicalIteratorTests:test_LexicographicalIterator_continue_at_dim": {
"log": "",
"state": "passed"
},
"utility:LexicographicalIteratorTests:test_LexicographicalIterator_increment": {
"log": "",
"state": "passed"
},
"utility:LexicographicalIteratorTests:test_LexicographicalIterator_num_states_total": {
"log": "",
"state": "passed"
},
"utility:LexicographicalIteratorTests:test_LexicographicalIterator_reset_state": {
"log": "",
"state": "passed"
},
"utility:LowMemGraphTests:test_add_edge": {
"log": "",
"state": "passed"
},
"utility:LowMemGraphTests:test_copy_constructor": {
"log": "",
"state": "passed"
},
"utility:LowMemGraphTests:test_deletion_space_savings": {
"log": "",
"state": "passed"
},
"utility:LowMemGraphTests:test_drop_all_edges_for_node": {
"log": "",
"state": "passed"
},
"utility:LowMemGraphTests:test_find_edge": {
"log": "",
"state": "passed"
},
"utility:LowMemGraphTests:test_get_node": {
"log": "",
"state": "passed"
},
"utility:LowMemGraphTests:test_iterators": {
"log": "",
"state": "passed"
},
"utility:LowMemGraphTests:test_iterators_w_deleted_data": {
"log": "",
"state": "passed"
},
"utility:LowMemGraphTests:test_operator_assignment": {
"log": "",
"state": "passed"
},
"utility:MinMaxTest:test_argmax_std_vector": {
"log": "",
"state": "passed"
},
"utility:MinMaxTest:test_argmax_std_vector_empty_input": {
"log": "",
"state": "passed"
},
"utility:MinMaxTest:test_argmax_vector1": {
"log": "",
"state": "passed"
},
"utility:MinMaxTest:test_argmax_vector1_empty_input": {
"log": "",
"state": "passed"
},
"utility:MinMaxTest:test_argmin_std_vector": {
"log": "",
"state": "passed"
},
"utility:MinMaxTest:test_argmin_std_vector_empty_input": {
"log": "",
"state": "passed"
},
"utility:MinMaxTest:test_argmin_vector1": {
"log": "",
"state": "passed"
},
"utility:MinMaxTest:test_argmin_vector1_empty_input": {
"log": "",
"state": "passed"
},
"utility:OptionCollectionTests:test_check_specs": {
"log": "",
"state": "passed"
},
"utility:OrderedTupleTests:test_OrderedTuple_compare_fsa": {
"log": "",
"state": "passed"
},
"utility:OrderedTupleTests:test_OrderedTuple_data_assignment_fsa": {
"log": "",
"state": "passed"
},
"utility:OrderedTupleTests:test_OrderedTuple_data_assignment_list": {
"log": "",
"state": "passed"
},
"utility:OrderedTupleTests:test_OrderedTuple_data_assignment_v1": {
"log": "",
"state": "passed"
},
"utility:PathNameTests:test_parent": {
"log": "",
"state": "passed"
},
"utility:PathNameTests:test_path": {
"log": "",
"state": "passed"
},
"utility:PathNameTests:test_vol": {
"log": "",
"state": "passed"
},
"utility:PausableSignalHubTests:test_PausableSignalHub_pausing": {
"log": "",
"state": "passed"
},
"utility:ReadWriteMutexTests:test_empty": {
"log": "",
"state": "passed"
},
"utility:ReadWriteMutexTests:test_thread_waits_for_reading_to_finish_to_write": {
"log": "",
"state": "passed"
},
"utility:ReadWriteMutexTests:test_two_threads_read_together": {
"log": "",
"state": "passed"
},
"utility:ReadWriteMutexTests:test_write_lock_prevents_reading": {
"log": "",
"state": "passed"
},
"utility:RecentHistoryQueueTests:test_bump_an_element_from_the_history": {
"log": "",
"state": "passed"
},
"utility:RecentHistoryQueueTests:test_bump_an_element_from_the_history_after_resent_queue_end": {
"log": "",
"state": "passed"
},
"utility:RecentHistoryQueueTests:test_recent_history_queue_fill_queue": {
"log": "",
"state": "passed"
},
"utility:RecentHistoryQueueTests:test_reset_recent_history_queue_head": {
"log": "",
"state": "passed"
},
"utility:RecentHistoryQueueTests:test_reset_recent_history_queue_middle": {
"log": "",
"state": "passed"
},
"utility:RecentHistoryQueueTests:test_reset_recent_history_queue_tail": {
"log": "",
"state": "passed"
},
"utility:RingDetectionTests:test_benzene_annotation": {
"log": "",
"state": "passed"
},
"utility:RingDetectionTests:test_benzene_sizes": {
"log": "",
"state": "passed"
},
"utility:RingDetectionTests:test_cubane_sizes": {
"log": "",
"state": "passed"
},
"utility:RingDetectionTests:test_early_out_sizes": {
"log": "",
"state": "passed"
},
"utility:RingDetectionTests:test_indole_sizes": {
"log": "",
"state": "passed"
},
"utility:RingDetectionTests:test_stem_annotation": {
"log": "",
"state": "passed"
},
"utility:SignalHubTests:test_SignalHub_attach_detach_notify": {
"log": "",
"state": "passed"
},
"utility:SignalHubTests:test_SignalHub_bad_attach_detach": {
"log": "",
"state": "passed"
},
"utility:SignalHubTests:test_SignalHub_link": {
"log": "",
"state": "passed"
},
"utility:SignalHubTests:test_SignalHub_single_to_multi": {
"log": "",
"state": "passed"
},
"utility:SimulateMPITests:test_char": {
"log": "",
"state": "passed"
},
"utility:SimulateMPITests:test_double": {
"log": "",
"state": "passed"
},
"utility:SimulateMPITests:test_doubles": {
"log": "",
"state": "passed"
},
"utility:SimulateMPITests:test_integer": {
"log": "",
"state": "passed"
},
"utility:SimulateMPITests:test_integers": {
"log": "",
"state": "passed"
},
"utility:SimulateMPITests:test_nprocs": {
"log": "",
"state": "passed"
},
"utility:SimulateMPITests:test_string": {
"log": "",
"state": "passed"
},
"utility:SmallKeyMapTests:test_SmallKeyMap_general": {
"log": "",
"state": "passed"
},
"utility:SmallKeyMapTests:test_SmallKeyMap_swap": {
"log": "",
"state": "passed"
},
"utility:SmallKeyVectorTests:test_SmallKeyVector_general": {
"log": "",
"state": "passed"
},
"utility:SmallKeyVectorTests:test_SmallKeyVector_swap": {
"log": "",
"state": "passed"
},
"utility:SmallVector1_Tests:test_vector1_assignment": {
"log": "",
"state": "passed"
},
"utility:SmallVector1_Tests:test_vector1_constructor": {
"log": "",
"state": "passed"
},
"utility:SmallVector1_Tests:test_vector1_copy": {
"log": "",
"state": "passed"
},
"utility:SmallVector1_Tests:test_vector1_swap": {
"log": "",
"state": "passed"
},
"utility:SortFunctionsTest:test_argsort": {
"log": "",
"state": "passed"
},
"utility:SortFunctionsTest:test_fractional_rank": {
"log": "",
"state": "passed"
},
"utility:StringUtilTests:test_contains": {
"log": "",
"state": "passed"
},
"utility:StringUtilTests:test_file_basename": {
"log": "",
"state": "passed"
},
"utility:StringUtilTests:test_filename": {
"log": "",
"state": "passed"
},
"utility:StringUtilTests:test_make_segtag": {
"log": "",
"state": "passed"
},
"utility:StringUtilTests:test_pad_atom_name": {
"log": "",
"state": "passed"
},
"utility:StringUtilTests:test_padding": {
"log": "",
"state": "passed"
},
"utility:StringUtilTests:test_pathname": {
"log": "",
"state": "passed"
},
"utility:StringUtilTests:test_quoted_split": {
"log": "",
"state": "passed"
},
"utility:StringUtilTests:test_real_format": {
"log": "",
"state": "passed"
},
"utility:StringUtilTests:test_remove_from_string": {
"log": "",
"state": "passed"
},
"utility:StringUtilTests:test_reschain_to_string": {
"log": "",
"state": "passed"
},
"utility:StringUtilTests:test_reschainseg_to_string": {
"log": "",
"state": "passed"
},
"utility:StringUtilTests:test_same_ignoring_spaces": {
"log": "",
"state": "passed"
},
"utility:StringUtilTests:test_slurp": {
"log": "",
"state": "passed"
},
"utility:StringUtilTests:test_string2uint": {
"log": "",
"state": "passed"
},
"utility:StringUtilTests:test_string_to_res_and_segid": {
"log": "",
"state": "passed"
},
"utility:StringUtilTests:test_string_to_reschain": {
"log": "",
"state": "passed"
},
"utility:StringUtilTests:test_string_to_sha1": {
"log": "",
"state": "passed"
},
"utility:StringUtilTests:test_trims": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_17": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_18": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_19": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_20": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_21": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_22": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_22_sq": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_23": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_24": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_25": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_25sq": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_26": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_26sq": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_4": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_40": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_41": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_42": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_43": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_44": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_45": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_46": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_47": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_48": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_49": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_5": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_55": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_56": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_57": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_58": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_59": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_6": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_60": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_61": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_62": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_63": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_64": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_65": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_66": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_67": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_68": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_69": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_6_sq": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_7": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_70": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_71": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_72": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_73": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_74": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_75": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_76": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_77": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_78": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_79": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_8": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_80": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_81": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_82": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_83": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_84": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_85": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_86": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_87": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_88": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_89": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_90": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_autobool": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_fail_1": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_fail_10": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_fail_12": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_fail_13": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_fail_14": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_fail_15": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_fail_2": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_fail_3": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_fail_4": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_fail_5": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_fail_6": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_fail_7": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_fail_8": {
"log": "",
"state": "passed"
},
"utility:TagTests:test_fail_9": {
"log": "",
"state": "passed"
},
"utility:TokenHubTests:test_TokenHub": {
"log": "",
"state": "passed"
},
"utility:UToolsTests:test_isEq": {
"log": "",
"state": "passed"
},
"utility:UToolsTests:test_isFloatNumber": {
"log": "",
"state": "passed"
},
"utility:UToolsTests:test_isMarkup": {
"log": "",
"state": "passed"
},
"utility:UTracerTests:test_comparisions": {
"log": "",
"state": "passed"
},
"utility:UserKeyTests:test_UserKey_general": {
"log": "",
"state": "passed"
},
"utility:UtilityNumbersTests:test_undefined": {
"log": "",
"state": "passed"
},
"utility:Vector0Tests:test_vector0_assignment": {
"log": "",
"state": "passed"
},
"utility:Vector0Tests:test_vector0_compare_to_std": {
"log": "",
"state": "passed"
},
"utility:Vector0Tests:test_vector0_constructor": {
"log": "",
"state": "passed"
},
"utility:Vector0Tests:test_vector0_copy": {
"log": "",
"state": "passed"
},
"utility:Vector0Tests:test_vector0_swap": {
"log": "",
"state": "passed"
},
"utility:Vector0Tests:test_vector0_utility_methods": {
"log": "",
"state": "passed"
},
"utility:Vector1BoolTests:test_vector1_bool_assignment": {
"log": "",
"state": "passed"
},
"utility:Vector1BoolTests:test_vector1_bool_compare_to_std": {
"log": "",
"state": "passed"
},
"utility:Vector1BoolTests:test_vector1_bool_constructor": {
"log": "",
"state": "passed"
},
"utility:Vector1BoolTests:test_vector1_bool_copy": {
"log": "",
"state": "passed"
},
"utility:Vector1BoolTests:test_vector1_bool_flip": {
"log": "",
"state": "passed"
},
"utility:Vector1BoolTests:test_vector1_bool_swap": {
"log": "",
"state": "passed"
},
"utility:Vector1FunctionsTests:test_binary_search_ranges_even_n_elements": {
"log": "",
"state": "passed"
},
"utility:Vector1FunctionsTests:test_binary_search_ranges_odd_n_elements": {
"log": "",
"state": "passed"
},
"utility:Vector1FunctionsTests:test_nmers_of_6_choose_3": {
"log": "",
"state": "passed"
},
"utility:Vector1_Tests:test_vector1_assignment": {
"log": "",
"state": "passed"
},
"utility:Vector1_Tests:test_vector1_compare_to_std": {
"log": "",
"state": "passed"
},
"utility:Vector1_Tests:test_vector1_constructor": {
"log": "",
"state": "passed"
},
"utility:Vector1_Tests:test_vector1_copy": {
"log": "",
"state": "passed"
},
"utility:Vector1_Tests:test_vector1_swap": {
"log": "",
"state": "passed"
},
"utility:Vector1_Tests:test_vector1_utility_methods": {
"log": "",
"state": "passed"
},
"utility:VectorLTests:test_vectorL_assignment": {
"log": "",
"state": "passed"
},
"utility:VectorLTests:test_vectorL_compare_to_std": {
"log": "",
"state": "passed"
},
"utility:VectorLTests:test_vectorL_constructor_minus2": {
"log": "",
"state": "passed"
},
"utility:VectorLTests:test_vectorL_constructor_plus2": {
"log": "",
"state": "passed"
},
"utility:VectorLTests:test_vectorL_copy": {
"log": "",
"state": "passed"
},
"utility:VectorLTests:test_vectorL_erase_index": {
"log": "",
"state": "passed"
},
"utility:VectorLTests:test_vectorL_has_index": {
"log": "",
"state": "passed"
},
"utility:VectorLTests:test_vectorL_shrink": {
"log": "",
"state": "passed"
},
"utility:VectorLTests:test_vectorL_swap": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_complex_type_generator_seq_of_sets1": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_complex_type_group_all": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_complex_type_group_choice": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_complex_type_group_sequence": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_repeatable_complex_type_node": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_complex_type_all1": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_complex_type_all2": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_complex_type_all_w_attributes": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_complex_type_choice1": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_complex_type_choice2": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_complex_type_choice_w_attributes": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_complex_type_empty_but_seq_w_attributes": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_complex_type_empty_w_attributes": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_complex_type_no_children_no_attributes": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_complex_type_schema_generator_group_ct": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_complex_type_schema_generator_group_ct_no_inner_naming_func": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_complex_type_schema_generator_simple_ct": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_complex_type_schema_generator_subelement_ctref": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_complex_type_sequence1": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_complex_type_sequence2": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_complex_type_sequence_w_attributes": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_element_group_reference": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_element_group_reference_w_occurs": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_element_type_reference": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_element_type_reference_w_occurs": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_element_w_complex_type": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_schema_definition_detect_missing_name": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_schema_definition_detect_name_collision": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_schema_definition_detect_name_mismatch": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_schema_definition_write_xsd": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_schema_definition_write_xsd_w_identical_duplicate": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xml_schema_definition_write_xsd_w_nonidentical_duplicate": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xmlschema_data_type": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xmlschema_restriction_enumeration": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xmlschema_restriction_int_range": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xmlschema_restriction_pattern": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xmlschema_restriction_type_names": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xs_attribute_custom": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xs_attribute_int_default": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xs_attribute_string": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaGenerationTests:test_xs_attribute_string_required": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaValidationTests:test_XMLValidator_validate_one_file": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaValidationTests:test_XMLValidator_validate_several_files": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaValidationTests:test_validate_bad_xml_file_against_xsd_using_libxml2": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaValidationTests:test_validate_good_xml_file_against_xsd_using_libxml2": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaValidationTests:test_validate_invalid_xml_file_against_xsd_using_libxml2": {
"log": "",
"state": "passed"
},
"utility:XMLSchemaValidationTests:test_validate_xml_file_against_bad_xsd_using_libxml2": {
"log": "",
"state": "passed"
},
"utility:ZipStreamTests:test_zipstream_general": {
"log": "",
"state": "passed"
},
"utility:heapTests:test_heap_add_two_elememnts": {
"log": "",
"state": "passed"
},
"utility:heapTests:test_heap_constructor": {
"log": "",
"state": "passed"
},
"utility:heapTests:test_heap_decrease_coval": {
"log": "",
"state": "passed"
},
"utility:heapTests:test_heap_exceed_capacity": {
"log": "",
"state": "passed"
},
"utility:heapTests:test_heap_increase_coval": {
"log": "",
"state": "passed"
},
"utility:heapTests:test_heap_insert_one_element": {
"log": "",
"state": "passed"
},
"utility:heapTests:test_heap_remove_element_from_one_element_heap": {
"log": "",
"state": "passed"
},
"utility:heapTests:test_heap_remove_element_from_two_element_heap": {
"log": "",
"state": "passed"
},
"utility:heapTests:test_heap_remove_from_full_heap": {
"log": "",
"state": "passed"
},
"utility:in_place_listTests:test_create_in_place_list": {
"log": "",
"state": "passed"
},
"utility:in_place_listTests:test_drop_element_in_place_list": {
"log": "",
"state": "passed"
},
"utility:in_place_listTests:test_in_place_list_move_to_front_from_back": {
"log": "",
"state": "passed"
},
"utility:in_place_listTests:test_in_place_list_move_to_front_from_front": {
"log": "",
"state": "passed"
},
"utility:in_place_listTests:test_in_place_list_move_to_front_from_middle": {
"log": "",
"state": "passed"
},
"utility:in_place_listTests:test_in_place_list_remove_all_but_head": {
"log": "",
"state": "passed"
},
"utility:in_place_listTests:test_in_place_list_remove_all_but_one": {
"log": "",
"state": "passed"
},
"utility:in_place_listTests:test_in_place_list_remove_all_but_tail": {
"log": "",
"state": "passed"
},
"utility:in_place_listTests:test_in_place_list_remove_from_head": {
"log": "",
"state": "passed"
},
"utility:in_place_listTests:test_in_place_list_remove_from_tail": {
"log": "",
"state": "passed"
},
"utility:integer_mappingTests:test_subset_mapping_copy_ctor": {
"log": "",
"state": "passed"
},
"utility:integer_mappingTests:test_subset_mapping_default_ctor": {
"log": "",
"state": "passed"
},
"utility:integer_mappingTests:test_subset_mapping_odds_map": {
"log": "",
"state": "passed"
},
"utility:integer_mappingTests:test_subset_mapping_out_of_bounds_set_next_coorespondence": {
"log": "",
"state": "passed"
},
"utility:integer_mappingTests:test_subset_mapping_overwrite_correspondence": {
"log": "",
"state": "passed"
},
"utility:integer_mappingTests:test_subset_mapping_size_ctor": {
"log": "",
"state": "passed"
},
"utility:json_utilitiesTests:test_bool": {
"log": "",
"state": "passed"
},
"utility:json_utilitiesTests:test_nonempty_array": {
"log": "",
"state": "passed"
},
"utility:json_utilitiesTests:test_nonempty_object": {
"log": "",
"state": "passed"
},
"utility:json_utilitiesTests:test_nonempty_string": {
"log": "",
"state": "passed"
},
"utility:json_utilitiesTests:test_number": {
"log": "",
"state": "passed"
},
"utility:make_shared_Tests:test_make_shared": {
"log": "",
"state": "passed"
},
"utility:type_traits_Tests:test_is_string_constructible": {
"log": "",
"state": "passed"
}
}
}