{
"tests": {
"C001_Carbohydrates_Demo01": {
"log": "Traceback (most recent call last):\n File \"test/C001_Carbohydrates_Demo01.py\", line 7, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished C001_Carbohydrates_Demo01 in 0:00:00.157253",
"state": "failed"
},
"D010_Pose_structure": {
"log": "Traceback (most recent call last):\n File \"demo/D010_Pose_structure.py\", line 57, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished D010_Pose_structure in 0:00:00.178215",
"state": "failed"
},
"D020_Pose_scoring": {
"log": "Traceback (most recent call last):\n File \"demo/D020_Pose_scoring.py\", line 66, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished D020_Pose_scoring in 0:00:00.168958",
"state": "failed"
},
"D030_Fold_tree": {
"log": "Traceback (most recent call last):\n File \"demo/D030_Fold_tree.py\", line 65, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished D030_Fold_tree in 0:00:00.166265",
"state": "failed"
},
"D040_Movemap": {
"log": "Traceback (most recent call last):\n File \"demo/D040_Movemap.py\", line 64, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished D040_Movemap in 0:00:00.166308",
"state": "failed"
},
"D050_Packer_task": {
"log": "Traceback (most recent call last):\n File \"demo/D050_Packer_task.py\", line 69, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished D050_Packer_task in 0:00:00.167859",
"state": "failed"
},
"D060_Folding": {
"log": "Traceback (most recent call last):\n File \"demo/D060_Folding.py\", line 95, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished D060_Folding in 0:00:00.169914",
"state": "failed"
},
"D070_Refinement": {
"log": "Traceback (most recent call last):\n File \"demo/D070_Refinement.py\", line 89, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished D070_Refinement in 0:00:00.167344",
"state": "failed"
},
"D080_Loop_modeling": {
"log": "Traceback (most recent call last):\n File \"demo/D080_Loop_modeling.py\", line 122, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished D080_Loop_modeling in 0:00:00.160026",
"state": "failed"
},
"D090_Ala_scan": {
"log": "demo/D090_Ala_scan.py:84: UserWarning: Import of 'rosetta' as a top-level module is deprecated and may be removed in 2018, import via 'pyrosetta.rosetta'.\n from rosetta.protocols.scoring import Interface\nTraceback (most recent call last):\n File \"demo/D090_Ala_scan.py\", line 84, in <module>\n from rosetta.protocols.scoring import Interface\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/rosetta/__init__.py\", line 21, in <module>\n import pyrosetta.rosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished D090_Ala_scan in 0:00:00.166225",
"state": "failed"
},
"D100_Docking": {
"log": "Traceback (most recent call last):\n File \"demo/D100_Docking.py\", line 90, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished D100_Docking in 0:00:00.166599",
"state": "failed"
},
"D110_DNA_interface": {
"log": "Traceback (most recent call last):\n File \"demo/D110_DNA_interface.py\", line 73, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished D110_DNA_interface in 0:00:00.166056",
"state": "failed"
},
"D120_Ligand_interface": {
"log": "Traceback (most recent call last):\n File \"demo/D120_Ligand_interface.py\", line 79, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished D120_Ligand_interface in 0:00:00.160174",
"state": "failed"
},
"T000_Imports": {
"log": "Traceback (most recent call last):\n File \"test/T000_Imports.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T000_Imports in 0:00:00.159017",
"state": "failed"
},
"T005_Bindings": {
"log": "Traceback (most recent call last):\n File \"test/T005_Bindings.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T005_Bindings in 0:00:00.164650",
"state": "failed"
},
"T006_Options": {
"log": "Traceback (most recent call last):\n File \"test/T006_Options.py\", line 3, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T006_Options in 0:00:00.161133",
"state": "failed"
},
"T007_TracerIO": {
"log": "-------- Test/Demo for capturing Tracers output in PyRosetta --------\ntest/T007_TracerIO.py:14: UserWarning: Import of 'rosetta' as a top-level module is deprecated and may be removed in 2018, import via 'pyrosetta.rosetta'.\n import rosetta, pyrosetta\nTraceback (most recent call last):\n File \"test/T007_TracerIO.py\", line 14, in <module>\n import rosetta, pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/rosetta/__init__.py\", line 21, in <module>\n import pyrosetta.rosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T007_TracerIO in 0:00:00.158048",
"state": "failed"
},
"T008_Serialization": {
"log": "Traceback (most recent call last):\n File \"test/T008_Serialization.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T008_Serialization in 0:00:00.157171",
"state": "failed"
},
"T009_Exceptions": {
"log": "Traceback (most recent call last):\n File \"test/T009_Exceptions.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T009_Exceptions in 0:00:00.160513",
"state": "failed"
},
"T010_LoadPDB": {
"log": "Traceback (most recent call last):\n File \"test/T010_LoadPDB.py\", line 18, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T010_LoadPDB in 0:00:00.161372",
"state": "failed"
},
"T020_Pose_Bindings": {
"log": "Traceback (most recent call last):\n File \"test/T020_Pose_Bindings.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T020_Pose_Bindings in 0:00:00.136286",
"state": "failed"
},
"T040_Types": {
"log": "Traceback (most recent call last):\n File \"test/T040_Types.py\", line 17, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T040_Types in 0:00:00.162734",
"state": "failed"
},
"T100_basic": {
"log": "Traceback (most recent call last):\n File \"test/T100_basic.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T100_basic in 0:00:00.129014",
"state": "failed"
},
"T110_numeric": {
"log": "Traceback (most recent call last):\n File \"test/T110_numeric.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T110_numeric in 0:00:00.158780",
"state": "failed"
},
"T120_core.RotamerSets": {
"log": "Traceback (most recent call last):\n File \"test/T120_core.RotamerSets.py\", line 14, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T120_core.RotamerSets in 0:00:00.156693",
"state": "failed"
},
"T150_PyMOL_Integration": {
"log": "Traceback (most recent call last):\n File \"test/T150_PyMOL_Integration.py\", line 6, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T150_PyMOL_Integration in 0:00:00.137583",
"state": "failed"
},
"T190_Bindings_Utility": {
"log": "Traceback (most recent call last):\n File \"test/T190_Bindings_Utility.py\", line 10, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T190_Bindings_Utility in 0:00:00.145004",
"state": "failed"
},
"T200_Scoring": {
"log": "Traceback (most recent call last):\n File \"test/T200_Scoring.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T200_Scoring in 0:00:00.157182",
"state": "failed"
},
"T201_Scoring_pre_talaris": {
"log": "Traceback (most recent call last):\n File \"test/T201_Scoring_pre_talaris.py\", line 17, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T201_Scoring_pre_talaris in 0:00:00.144056",
"state": "failed"
},
"T220_AtomAtomPairEnergies": {
"log": "Traceback (most recent call last):\n File \"test/T220_AtomAtomPairEnergies.py\", line 5, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T220_AtomAtomPairEnergies in 0:00:00.151397",
"state": "failed"
},
"T250_Constraints": {
"log": "Traceback (most recent call last):\n File \"test/T250_Constraints.py\", line 3, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T250_Constraints in 0:00:00.154493",
"state": "failed"
},
"T300_PyJobDistributor": {
"log": "Traceback (most recent call last):\n File \"test/T300_PyJobDistributor.py\", line 14, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T300_PyJobDistributor in 0:00:00.128632",
"state": "failed"
},
"T400_Refinement": {
"log": "Traceback (most recent call last):\n File \"test/T400_Refinement.py\", line 15, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T400_Refinement in 0:00:00.101914",
"state": "failed"
},
"T500_Packing": {
"log": "Traceback (most recent call last):\n File \"test/T500_Packing.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T500_Packing in 0:00:00.071778",
"state": "failed"
},
"T600_Docking": {
"log": "Traceback (most recent call last):\n File \"test/T600_Docking.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T600_Docking in 0:00:00.104458",
"state": "failed"
},
"T650_LoopsKIC": {
"log": "Traceback (most recent call last):\n File \"test/T650_LoopsKIC.py\", line 11, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T650_LoopsKIC in 0:00:00.100555",
"state": "failed"
},
"T660_LoopBuilding": {
"log": "Traceback (most recent call last):\n File \"test/T660_LoopBuilding.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T660_LoopBuilding in 0:00:00.100465",
"state": "failed"
},
"T700_FoldTree": {
"log": "Traceback (most recent call last):\n File \"test/T700_FoldTree.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T700_FoldTree in 0:00:00.102683",
"state": "failed"
},
"T800_ClassicRelax": {
"log": "Traceback (most recent call last):\n File \"test/T800_ClassicRelax.py\", line 15, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T800_ClassicRelax in 0:00:00.099090",
"state": "failed"
},
"T850_SubClassing": {
"log": "Traceback (most recent call last):\n File \"test/T850_SubClassing.py\", line 16, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T850_SubClassing in 0:00:00.107253",
"state": "failed"
},
"T860_SubClassing_EnergyMethods": {
"log": "Traceback (most recent call last):\n File \"test/T860_SubClassing_EnergyMethods.py\", line 16, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T860_SubClassing_EnergyMethods in 0:00:00.099513",
"state": "failed"
},
"T870_SubClassing_EnergyMethods2": {
"log": "Traceback (most recent call last):\n File \"test/T870_SubClassing_EnergyMethods2.py\", line 15, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T870_SubClassing_EnergyMethods2 in 0:00:00.105698",
"state": "failed"
},
"T880_Other": {
"log": "Traceback (most recent call last):\n File \"test/T880_Other.py\", line 12, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T880_Other in 0:00:00.091650",
"state": "failed"
},
"T900_distributed": {
"log": "sys.version_info: sys.version_info(major=3, minor=7, micro=7, releaselevel='final', serial=0)\nTraceback (most recent call last):\n File \"test/T900_distributed.py\", line 17, in <module>\n import pyrosetta.rosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished T900_distributed in 0:00:00.102558",
"state": "failed"
},
"Workshop2test": {
"log": "Traceback (most recent call last):\n File \"test/Workshop2test.py\", line 9, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished Workshop2test in 0:00:00.101671",
"state": "failed"
},
"Workshop3test": {
"log": "Traceback (most recent call last):\n File \"test/Workshop3test.py\", line 8, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished Workshop3test in 0:00:00.105610",
"state": "failed"
},
"Workshop4test": {
"log": "Traceback (most recent call last):\n File \"test/Workshop4test.py\", line 15, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished Workshop4test in 0:00:00.103037",
"state": "failed"
},
"Workshop5test": {
"log": "Traceback (most recent call last):\n File \"test/Workshop5test.py\", line 6, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished Workshop5test in 0:00:00.102146",
"state": "failed"
},
"Workshop6test": {
"log": "Traceback (most recent call last):\n File \"test/Workshop6test.py\", line 6, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished Workshop6test in 0:00:00.100979",
"state": "failed"
},
"Workshop7test": {
"log": "Traceback (most recent call last):\n File \"test/Workshop7test.py\", line 8, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished Workshop7test in 0:00:00.098800",
"state": "failed"
},
"Workshop8test": {
"log": "Traceback (most recent call last):\n File \"test/Workshop8test.py\", line 6, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished Workshop8test in 0:00:00.098122",
"state": "failed"
},
"Workshop9_my_shapes": {
"log": "Traceback (most recent call last):\n File \"test/Workshop9_my_shapes.py\", line 6, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished Workshop9_my_shapes in 0:00:00.100617",
"state": "failed"
},
"Workshop9test": {
"log": "Traceback (most recent call last):\n File \"test/Workshop9test.py\", line 6, in <module>\n import pyrosetta\n File \"/home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/__init__.py\", line 15, in <module>\n import pyrosetta.rosetta as rosetta\nImportError: /home/benchmark/rosetta/source/build/PyRosetta/linux/clang-6.0.0/python-3.7/minsizerel/build/pyrosetta/rosetta.so: undefined symbol: _ZN9protocols24protein_interface_design6movers26SecretionOptimizationMover8scorefxnESt10shared_ptrIKN4core7scoring13ScoreFunctionEE\n\nFinished Workshop9test in 0:00:00.096518",
"state": "failed"
}
}
}