Branch: rosetta:commits 「revision: №20716」
Test: linux.gcc.mpi.serialization.integration.mpi
SubTest: replica_docking
SubTest files: 「file-system-view」
Daemon: hojo-2    
State: replica_docking

Brief Diff: Files /home/benchmark/working_dir/main:62149/replica_docking/log and /home/benchmark/working_dir/commits:20716/replica_docking/log differ Files /home/benchmark/working_dir/main:62149/replica_docking/logs/log_0 and /home/benchmark/working_dir/commits:20716/replica_docking/logs/log_0 differ Files /home/benchmark/working_dir/main:62149/replica_docking/logs/log_1 and /home/benchmark/working_dir/commits:20716/replica_docking/logs/log_1 differ Files /home/benchmark/working_dir/main:62149/replica_docking/logs/log_2 and /home/benchmark/working_dir/commits:20716/replica_docking/logs/log_2 differ Files /home/benchmark/working_dir/main:62149/replica_docking/logs/log_3 and /home/benchmark/working_dir/commits:20716/replica_docking/logs/log_3 differ Files /home/benchmark/working_dir/main:62149/replica_docking/output/decoys.out and /home/benchmark/working_dir/commits:20716/replica_docking/output/decoys.out differ Files /home/benchmark/working_dir/main:62149/replica_docking/output/decoys_P_0001_traj.out and /home/benchmark/working_dir/commits:20716/replica_docking/output/decoys_P_0001_traj.out differ Files /home/benchmark/working_dir/main:62149/replica_docking/output/decoys_P_0002_traj.out.oversized and /home/benchmark/working_dir/commits:20716/replica_docking/output/decoys_P_0002_traj.out.oversized differ Files /home/benchmark/working_dir/main:62149/replica_docking/output/scores.fsc and /home/benchmark/working_dir/commits:20716/replica_docking/output/scores.fsc differ Files /home/benchmark/working_dir/main:62149/replica_docking/tempering.stats and /home/benchmark/working_dir/commits:20716/replica_docking/tempering.stats differ Files /home/benchmark/working_dir/main:62149/replica_docking/.test_got_timeout_kill.log and /home/benchmark/working_dir/commits:20716/replica_docking/.test_got_timeout_kill.log differ Files /home/benchmark/working_dir/main:62149/replica_docking/trial.stats and /home/benchmark/working_dir/commits:20716/replica_docking/trial.stats differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62149/replica_docking/log /home/benchmark/working_dir/commits:20716/replica_docking/log 14c14 < mpirun noticed that process rank 1 with PID 1500243 on node nobu-2 exited on signal 9 (Killed). --- > mpirun noticed that process rank 5 with PID 3660244 on node hojo-2 exited on signal 9 (Killed). diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62149/replica_docking/logs/log_0 /home/benchmark/working_dir/commits:20716/replica_docking/logs/log_0 1,73d0 < core.init: (0) Rosetta version: 2025.12.post.dev+1.HEAD.74f819c 74f819c4dd58142810833fb8e63211f2974ee342 git@github.com:RosettaCommons/rosetta.git 2025-03-24T13:18:17 < core.init: (0) Rosetta extras: [mpi, serialization] < core.init: (0) command: ROSETTA/source/bin/rosetta_scripts.mpiserialization.linuxgccrelease_debug -in:path:database_cache_dir ROSETTA/.database-binaries/mpiserialization.linuxgccrelease_debug @flags_replica_dock -database ROSETTA/database -testing:INTEGRATION_TEST < basic.random.init_random_generator: (0) Constant seed mode, seed=1111111 seed_offset=0 real_seed=1111111 < basic.random.init_random_generator: (0) RandomGenerator:init: Normal mode, seed=1111111 RG_type=mt19937 < protocols.jd2.PDBJobInputter: (0) Instantiate PDBJobInputter < protocols.jd2.PDBJobInputter: (0) PDBJobInputter::fill_jobs < protocols.jd2.PDBJobInputter: (0) pushed P.pdb nstruct indices 1 - 4 < core.chemical.GlobalResidueTypeSet: (0) Finished initializing fa_standard residue type set. Created 985 residue types ...truncated... --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23493c23441 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23500c23448 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23507c23455 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23514c23462 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23521c23469 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23528c23476 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23535c23483 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23542c23490 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23549c23497 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23556c23504 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23563,23574c23511,23522 < protocols.moves.TrialCounter: (2) RigidBodyPerturb trials= 26126; accepts= 0.0637; energy_drop/trial= -0.00001 < protocols.moves.TrialCounter: (2) br_CA_CA_04 trials= 2457; accepts= 0.3525; energy_drop/trial= -0.00860 < protocols.moves.TrialCounter: (2) br_CA_CA_07 trials= 2436; accepts= 0.3054; energy_drop/trial= -0.05792 < protocols.moves.TrialCounter: (2) br_CA_CA_10 trials= 2418; accepts= 0.3259; energy_drop/trial= -0.03854 < protocols.moves.TrialCounter: (2) br_CA_CA_13 trials= 2389; accepts= 1.0000; energy_drop/trial= 0.00000 < protocols.moves.TrialCounter: (2) br_CA_CA_16 trials= 2318; accepts= 1.0000; energy_drop/trial= 0.00000 < protocols.moves.TrialCounter: (2) br_CA_CA_19 trials= 2345; accepts= 1.0000; energy_drop/trial= 0.00000 < protocols.moves.TrialCounter: (2) br_CA_CA_22 trials= 2309; accepts= 1.0000; energy_drop/trial= 0.00000 < protocols.moves.TrialCounter: (2) br_CA_CA_25 trials= 2380; accepts= 1.0000; energy_drop/trial= 0.00000 < protocols.moves.TrialCounter: (2) br_CA_CA_28 trials= 2319; accepts= 1.0000; energy_drop/trial= 0.00000 < protocols.moves.TrialCounter: (2) br_CA_CA_31 trials= 2244; accepts= 1.0000; energy_drop/trial= 0.00000 < protocols.moves.TrialCounter: (2) br_CA_CA_34 trials= 2260; accepts= 1.0000; energy_drop/trial= 0.00000 --- > protocols.moves.TrialCounter: (2) RigidBodyPerturb trials= 26133; accepts= 0.3940; energy_drop/trial= -0.00018 > protocols.moves.TrialCounter: (2) br_CA_CA_04 trials= 2488; accepts= 0.3658; energy_drop/trial= -0.03714 > protocols.moves.TrialCounter: (2) br_CA_CA_07 trials= 2557; accepts= 0.3078; energy_drop/trial= -0.03494 > protocols.moves.TrialCounter: (2) br_CA_CA_10 trials= 2474; accepts= 0.3335; energy_drop/trial= -0.03015 > protocols.moves.TrialCounter: (2) br_CA_CA_13 trials= 2374; accepts= 1.0000; energy_drop/trial= 0.00000 > protocols.moves.TrialCounter: (2) br_CA_CA_16 trials= 2326; accepts= 1.0000; energy_drop/trial= 0.00000 > protocols.moves.TrialCounter: (2) br_CA_CA_19 trials= 2372; accepts= 1.0000; energy_drop/trial= 0.00000 > protocols.moves.TrialCounter: (2) br_CA_CA_22 trials= 2323; accepts= 1.0000; energy_drop/trial= 0.00000 > protocols.moves.TrialCounter: (2) br_CA_CA_25 trials= 2251; accepts= 1.0000; energy_drop/trial= 0.00000 > protocols.moves.TrialCounter: (2) br_CA_CA_28 trials= 2301; accepts= 1.0000; energy_drop/trial= 0.00000 > protocols.moves.TrialCounter: (2) br_CA_CA_31 trials= 2228; accepts= 1.0000; energy_drop/trial= 0.00000 > protocols.moves.TrialCounter: (2) br_CA_CA_34 trials= 2174; accepts= 1.0000; energy_drop/trial= 0.00000 23576c23524 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23583c23531 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23590c23538 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23597c23545 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.14026 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23604c23552 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #4( O ) : Ideal theta=1.03323, Inspected theta=1.04374 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23611c23559 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #4( O ) : Ideal theta=1.03323, Inspected theta=1.04374 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23618c23566 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #4( O ) : Ideal theta=1.03323, Inspected theta=1.04374 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23625c23573 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #4( O ) : Ideal theta=1.03323, Inspected theta=1.04374 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23632c23580 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #4( O ) : Ideal theta=1.03323, Inspected theta=1.04374 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23639c23587 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #4( O ) : Ideal theta=1.03323, Inspected theta=1.04374 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23646c23594 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #4( O ) : Ideal theta=1.03323, Inspected theta=1.04374 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23653c23601 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #4( O ) : Ideal theta=1.03323, Inspected theta=1.04374 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23660c23608 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #4( O ) : Ideal theta=1.03323, Inspected theta=1.04374 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23667c23615 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #4( O ) : Ideal theta=1.03323, Inspected theta=1.04374 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.11007 (in Radians) 23674c23622 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #4( O ) : Ideal theta Compare(...): Marking as "Script failed" due to presense of .test_did_not_run.log or .test_got_timeout_kill.log file!