Integration test "helical_bundle_predict_skipping_residues"

Author

Vikram K. Mulligan, Ph.D., Center for Computational Biology, Flatiron Institute (vmulligan@flatironinstitute.org).

Description

Integration test for the helical_bundle_predict application. This attempts to predict the structure of Chris Bahl's miniprotein with PDB ID 2ND2. Note that it is not expected that the structure will be correct in the short time of an integration test. The main thing is to ensure that the app runs.

This version tests flags that allow poses of unequal length to be compared. Two additional glycines that are not present in the native structure have been inserted in the first loop, and these are ignored in the alignment, as are the first two and last two residues of the pose.

Expected output

Five PDB files containing vaguely helical bundle-like polypeptides.