Branch: rosetta:commits 「revision: №20652」
Test: linux.gcc.mpi.serialization.integration.mpi
SubTest: replica_docking
SubTest files: 「file-system-view」
Daemon: takeshi    
State: replica_docking

Brief Diff: Files /home/benchmark/working_dir/main:62147/replica_docking/log and /home/benchmark/working_dir/commits:20652/replica_docking/log differ Files /home/benchmark/working_dir/main:62147/replica_docking/logs/log_0 and /home/benchmark/working_dir/commits:20652/replica_docking/logs/log_0 differ Files /home/benchmark/working_dir/main:62147/replica_docking/logs/log_1 and /home/benchmark/working_dir/commits:20652/replica_docking/logs/log_1 differ Files /home/benchmark/working_dir/main:62147/replica_docking/logs/log_2 and /home/benchmark/working_dir/commits:20652/replica_docking/logs/log_2 differ Files /home/benchmark/working_dir/main:62147/replica_docking/logs/log_3 and /home/benchmark/working_dir/commits:20652/replica_docking/logs/log_3 differ Files /home/benchmark/working_dir/main:62147/replica_docking/output/decoys.out and /home/benchmark/working_dir/commits:20652/replica_docking/output/decoys.out differ Files /home/benchmark/working_dir/main:62147/replica_docking/output/decoys_P_0001_traj.out and /home/benchmark/working_dir/commits:20652/replica_docking/output/decoys_P_0001_traj.out differ Only in /home/benchmark/working_dir/commits:20652/replica_docking/output: decoys_P_0002_traj.out Only in /home/benchmark/working_dir/main:62147/replica_docking/output: decoys_P_0002_traj.out.oversized Files /home/benchmark/working_dir/main:62147/replica_docking/output/scores.fsc and /home/benchmark/working_dir/commits:20652/replica_docking/output/scores.fsc differ Files /home/benchmark/working_dir/main:62147/replica_docking/tempering.stats and /home/benchmark/working_dir/commits:20652/replica_docking/tempering.stats differ Files /home/benchmark/working_dir/main:62147/replica_docking/.test_got_timeout_kill.log and /home/benchmark/working_dir/commits:20652/replica_docking/.test_got_timeout_kill.log differ Files /home/benchmark/working_dir/main:62147/replica_docking/trial.stats and /home/benchmark/working_dir/commits:20652/replica_docking/trial.stats differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/replica_docking/log /home/benchmark/working_dir/commits:20652/replica_docking/log 14c14 < mpirun noticed that process rank 3 with PID 3020076 on node nobu-2 exited on signal 9 (Killed). --- > mpirun noticed that process rank 1 with PID 3574000 on node takeshi exited on signal 9 (Killed). diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/replica_docking/logs/log_0 /home/benchmark/working_dir/commits:20652/replica_docking/logs/log_0 1c1 < core.init: (0) Rosetta version: 2025.06.post.dev+3.HEAD.029c6a1 029c6a159b896477003a14f78f472d4cd2cead46 git@github.com:RosettaCommons/rosetta.git 2025-02-04T15:14:13 --- > core.init: (0) Rosetta version: 2025.06.post.dev+2.HEAD.7a80c61 7a80c6148783c36bcf981c8549f8bbac924d61ee git@github.com:RosettaCommons/rosetta.git 2025-02-21T10:50:54 10c10 < core.chemical.GlobalResidueTypeSet: (0) Total time to initialize 6.76 seconds. --- > core.chemical.GlobalResidueTypeSet: (0) Total time to initialize 8.05 seconds. diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62147/replica_docking/logs/log_1 /home/benchmark/working_dir/commits:20652/replica_docking/logs/log_1 ...truncated... 22952c22562 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 22959c22569 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 22966c22576 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 22973c22583 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 22980c22590 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 22987c22597 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 22994c22604 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 23001c22611 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 23008c22618 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 23015,23028c22625,22638 < protocols.moves.TrialCounter: (2) RigidBodyPerturb trials= 25308; accepts= 0.0357; energy_drop/trial= -0.00033 < protocols.moves.TrialCounter: (2) br_CA_CA_04 trials= 2459; accepts= 0.3656; energy_drop/trial= -0.00862 < protocols.moves.TrialCounter: (2) br_CA_CA_07 trials= 2334; accepts= 0.3068; energy_drop/trial= -0.09169 < protocols.moves.TrialCounter: (2) br_CA_CA_10 trials= 2426; accepts= 0.3059; energy_drop/trial= -0.00929 < protocols.moves.TrialCounter: (2) br_CA_CA_13 trials= 2408; accepts= 1.0000; energy_drop/trial= 0.00000 < protocols.moves.TrialCounter: (2) br_CA_CA_16 trials= 2376; accepts= 1.0000; energy_drop/trial= 0.00000 < protocols.moves.TrialCounter: (2) br_CA_CA_19 trials= 2282; accepts= 1.0000; energy_drop/trial= 0.00000 < protocols.moves.TrialCounter: (2) br_CA_CA_22 trials= 2255; accepts= 1.0000; energy_drop/trial= 0.00000 < protocols.moves.TrialCounter: (2) br_CA_CA_25 trials= 2243; accepts= 1.0000; energy_drop/trial= 0.00000 < protocols.moves.TrialCounter: (2) br_CA_CA_28 trials= 2169; accepts= 1.0000; energy_drop/trial= 0.00000 < protocols.moves.TrialCounter: (2) br_CA_CA_31 trials= 2166; accepts= 1.0000; energy_drop/trial= 0.00000 < protocols.moves.TrialCounter: (2) br_CA_CA_34 trials= 2075; accepts= 1.0000; energy_drop/trial= 0.00000 < protocols.canonical_sampling.SilentTrajectoryRecorder: (2) 50500 E=-1.05e+03 temp_level=1 temperature=1 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > protocols.moves.TrialCounter: (2) RigidBodyPerturb trials= 24595; accepts= 0.2594; energy_drop/trial= -0.00048 > protocols.moves.TrialCounter: (2) br_CA_CA_04 trials= 2365; accepts= 0.3564; energy_drop/trial= -0.01355 > protocols.moves.TrialCounter: (2) br_CA_CA_07 trials= 2388; accepts= 0.2961; energy_drop/trial= -0.09733 > protocols.moves.TrialCounter: (2) br_CA_CA_10 trials= 2335; accepts= 0.2981; energy_drop/trial= -0.00544 > protocols.moves.TrialCounter: (2) br_CA_CA_13 trials= 2374; accepts= 1.0000; energy_drop/trial= 0.00000 > protocols.moves.TrialCounter: (2) br_CA_CA_16 trials= 2314; accepts= 1.0000; energy_drop/trial= 0.00000 > protocols.moves.TrialCounter: (2) br_CA_CA_19 trials= 2292; accepts= 1.0000; energy_drop/trial= 0.00000 > protocols.moves.TrialCounter: (2) br_CA_CA_22 trials= 2259; accepts= 1.0000; energy_drop/trial= 0.00000 > protocols.moves.TrialCounter: (2) br_CA_CA_25 trials= 2164; accepts= 1.0000; energy_drop/trial= 0.00000 > protocols.moves.TrialCounter: (2) br_CA_CA_28 trials= 2157; accepts= 1.0000; energy_drop/trial= 0.00000 > protocols.moves.TrialCounter: (2) br_CA_CA_31 trials= 2168; accepts= 1.0000; energy_drop/trial= 0.00000 > protocols.moves.TrialCounter: (2) br_CA_CA_34 trials= 2090; accepts= 1.0000; energy_drop/trial= 0.00000 > protocols.canonical_sampling.SilentTrajectoryRecorder: (2) 49500 E=-1.07e+03 temp_level=1 temperature=1 > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 23035c22645 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 23042c22652 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 23049c22659 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 23056c22666 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 23063c22673 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 23070c22680 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 23077c22687 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 23084c22694 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 23091c22701 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 23098c22708 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 23105c22715 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 23112c22722 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 23119c22729 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 23126c22736 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Radians) 23133c22743 < core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.15512 (in Radians) --- > core.conformation.util: (2) Non-ideal residue detected: Residue #1 atom #3( C ) : Ideal theta=1.20079, Inspected theta=1.12419 (in Rad Compare(...): Marking as "Script failed" due to presense of .test_did_not_run.log or .test_got_timeout_kill.log file!