Branch: rosetta:commits 「revision: №20467」
Test: m1.clang.python39.PyRosetta.unit
SubTest: Workshop8test
SubTest files: 「file-system-view」
Daemon: yoji-1    
State: Workshop8test

┌──────────────────────────────────────────────────────────────────────────────┐ │ PyRosetta-4 │ │ Created in JHU by Sergey Lyskov and PyRosetta Team │ │ (C) Copyright Rosetta Commons Member Institutions │ │ │ │ NOTE: USE OF PyRosetta FOR COMMERCIAL PURPOSES REQUIRE PURCHASE OF A LICENSE │ │ See LICENSE.PyRosetta.md or email license@uw.edu for details │ └──────────────────────────────────────────────────────────────────────────────┘ PyRosetta-4 2024 [Rosetta devel 2024.35.post.dev+3.HEAD.a7668ba53e7e4bd3385a3b1f40680bc2e2af438d 2024-09-07T10:41:45] retrieved from: git@github.com:RosettaCommons/rosetta.git FOLD_TREE EDGE 1 13 -1 EDGE 13 19 -1 EDGE 13 26 1 EDGE 26 20 -1 EDGE 26 116 -1 Working on decoy: /var/folders/z2/6n1bppgd5sz5zcr9msfmqqk80002cr/T/tmpzfq7nahb_0.pdb core.init: Checking for fconfig files in pwd and ./rosetta/flags core.init: Rosetta version: 2024.35.post.dev+3.HEAD.a7668ba53e a7668ba53e7e4bd3385a3b1f40680bc2e2af438d git@github.com:RosettaCommons/rosetta.git 2024-09-07T10:41:45 core.init: Rosetta extras: [] core.init: command: PyRosetta -ex1 -ex2aro -constant_seed -database /Volumes/scratch/w/rosetta/commits/rosetta/source/build/PyRosetta/macOS-12.7-arm64-arm-64bit/clang-14.0.0/python-3.9/minsizerel/build/pyrosetta/database basic.random.init_random_generator: Constant seed mode, seed=1111111 seed_offset=0 real_seed=1111111 basic.random.init_random_generator: RandomGenerator:init: Normal mode, seed=1111111 RG_type=mt19937 core.chemical.GlobalResidueTypeSet: Finished initializing fa_standard residue type set. Created 985 residue types core.chemical.GlobalResidueTypeSet: Total time to initialize 0.473998 seconds. core.import_pose.import_pose: File '../test/data/test_in.pdb' automatically determined to be of type PDB protocols.loops.loops_main: Added cutpoint variant to residue 19 protocols.loops.loops_main: Added cutpoint variant to residue 20 core.scoring.ramachandran: shapovalov_lib::shap_rama_smooth_level of 4( aka highest_smooth ) got activated. basic.io.database: Database file opened: scoring/score_functions/rama/shapovalov/kappa25/all.ramaProb protocols.loops.loops_main: [ WARNING ] Pose fold tree FOLD_TREE EDGE 1 14 -1 EDGE 14 19 -1 EDGE 14 25 1 EDGE 25 20 -1 EDGE 25 116 -1 core.import_pose.import_pose: File '../test/data/test_in.pdb' automatically determined to be of type PDB core.scoring.ScoreFunctionFactory: SCOREFUNCTION: ref2015 core.scoring.etable: Starting energy table calculation core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6) core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6) core.scoring.etable: Finished calculating energy tables. basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBPoly1D.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBFadeIntervals.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBEval.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/DonStrength.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/AccStrength.csv basic.io.database: Database file opened: scoring/score_functions/rama/fd/all.ramaProb basic.io.database: Database file opened: scoring/score_functions/rama/fd/prepro.ramaProb basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.all.txt basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.gly.txt basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.pro.txt basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.valile.txt basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_n core.scoring.P_AA: shapovalov_lib::shap_p_aa_pp_smooth_level of 1( aka low_smooth ) got activated. basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa131/a20.prop core.scoring.ScoreFunctionFactory: SCOREFUNCTION: ref2015 protocols.loops.loops_main: [ WARNING ] Pose fold tree FOLD_TREE EDGE 1 14 -1 EDGE 14 19 -1 EDGE 14 25 1 EDGE 25 20 -1 EDGE 25 116 -1 core.chemical.GlobalResidueTypeSet: Finished initializing centroid residue type set. Created 69 residue types core.chemical.GlobalResidueTypeSet: Total time to initialize 0.011657 seconds. basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt core.scoring.ScoreFunctionFactory: SCOREFUNCTION: ref2015 Finished Workshop8test in 0:00:02.876208