SubTest PyRosetta.unit.Workshop7test

Branch: rosetta:commits 「revision: №20467」
Test: m1.clang.python39.PyRosetta.unit
SubTest: Workshop7test
SubTest files: 「file-system-view」
Daemon: yoji-1
State: Workshop7test

core.init: Checking for fconfig files in pwd and ./rosetta/flags core.init: Rosetta version: 2024.35.post.dev+3.HEAD.a7668ba53e a7668ba53e7e4bd3385a3b1f40680bc2e2af438d git@github.com:RosettaCommons/rosetta.git 2024-09-07T10:41:45 core.init: Rosetta extras: [] core.init: command: PyRosetta -ex1 -ex2aro -constant_seed -database /Volumes/scratch/w/rosetta/commits/rosetta/source/build/PyRosetta/macOS-12.7-arm64-arm-64bit/clang-14.0.0/python-3.9/minsizerel/build/pyrosetta/database basic.random.init_random_generator: Constant seed mode, seed=1111111 seed_offset=0 real_seed=1111111 basic.random.init_random_generator: RandomGenerator:init: Normal mode, seed=1111111 RG_type=mt19937 core.chemical.GlobalResidueTypeSet: Finished initializing fa_standard residue type set. Created 985 residue types core.chemical.GlobalResidueTypeSet: Total time to initialize 0.47434 seconds. core.import_pose.import_pose: File '../test/data/workshops/complex.start.pdb' automatically determined to be of type PDB core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue ILE 246 core.conformation.Conformation: [ WARNING ] missing heavyatom: OG1 on residue THR 247 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG2 on residue THR 247 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue ASN 259 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD1 on residue ASN 259 core.conformation.Conformation: [ WARNING ] missing heavyatom: ND2 on residue ASN 259 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue GLU 272 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue GLU 272 core.conformation.Conformation: [ WARNING ] missing heavyatom: OE1 on residue GLU 272 core.conformation.Conformation: [ WARNING ] missing heavyatom: OE2 on residue GLU 272 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue ARG 286 core.conformation.Conformation: [ WARNING ] missing heavyatom: NE on residue ARG 286 core.conformation.Conformation: [ WARNING ] missing heavyatom: CZ on residue ARG 286 core.conformation.Conformation: [ WARNING ] missing heavyatom: NH1 on residue ARG 286 core.conformation.Conformation: [ WARNING ] missing heavyatom: NH2 on residue ARG 286 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue ARG 288 core.conformation.Conformation: [ WARNING ] missing heavyatom: NE on residue ARG 288 core.conformation.Conformation: [ WARNING ] missing heavyatom: CZ on residue ARG 288 core.conformation.Conformation: [ WARNING ] missing heavyatom: NH1 on residue ARG 288 core.conformation.Conformation: [ WARNING ] missing heavyatom: NH2 on residue ARG 288 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue ASP 321 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD1 on residue ASP 321 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD2 on residue ASP 321 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue LYS 334 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue LYS 334 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE on residue LYS 334 core.conformation.Conformation: [ WARNING ] missing heavyatom: NZ on residue LYS 334 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue ASP 335 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD1 on residue ASP 335 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD2 on residue ASP 335 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue ASP 338 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD1 on residue ASP 338 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD2 on residue ASP 338 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue PHE 348 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD1 on residue PHE 348 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD2 on residue PHE 348 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE1 on residue PHE 348 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE2 on residue PHE 348 core.conformation.Conformation: [ WARNING ] missing heavyatom: CZ on residue PHE 348 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue ASP 359 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD1 on residue ASP 359 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD2 on residue ASP 359 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue LYS 360 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue LYS 360 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE on residue LYS 360 core.conformation.Conformation: [ WARNING ] missing heavyatom: NZ on residue LYS 360 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue ASP 371 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD1 on residue ASP 371 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD2 on residue ASP 371 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue ASP 372 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD1 on residue ASP 372 core.conformation.Conformation: [ WARNING ] missing heavyatom: OD2 on residue ASP 372 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue LYS 381 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE on residue LYS 381 core.conformation.Conformation: [ WARNING ] missing heavyatom: NZ on residue LYS 381 core.conformation.Conformation: [ WARNING ] missing heavyatom: CG on residue LYS 383 core.conformation.Conformation: [ WARNING ] missing heavyatom: CD on residue LYS 383 core.conformation.Conformation: [ WARNING ] missing heavyatom: CE on residue LYS 383 core.conformation.Conformation: [ WARNING ] missing heavyatom: NZ on residue LYS 383 core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue LEU:CtermProteinFull 392 core.conformation.Conformation: Found disulfide between residues 7 137 core.conformation.Conformation: Found disulfide between residues 25 41 core.conformation.Conformation: Found disulfide between residues 109 210 core.conformation.Conformation: Found disulfide between residues 116 183 core.conformation.Conformation: Found disulfide between residues 148 162 core.conformation.Conformation: Found disulfide between residues 173 197 core.conformation.Conformation: Found disulfide between residues 262 309 core.conformation.Conformation: Found disulfide between residues 356 361 core.pack.pack_missing_sidechains: packing residue number 246 because of missing atom number 8 atom name CD1 core.pack.pack_missing_sidechains: packing residue number 247 because of missing atom number 6 atom name OG1 core.pack.pack_missing_sidechains: packing residue number 259 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 272 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 286 because of missing atom number 7 atom name CD core.pack.pack_missing_sidechains: packing residue number 288 because of missing atom number 7 atom name CD core.pack.pack_missing_sidechains: packing residue number 321 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 334 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 335 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 338 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 348 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 359 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 360 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 371 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 372 because of missing atom number 6 atom name CG core.pack.pack_missing_sidechains: packing residue number 381 because of missing atom number 7 atom name CD core.pack.pack_missing_sidechains: packing residue number 383 because of missing atom number 6 atom name CG core.pack.task: Packer task: initialize from command line() core.scoring.ScoreFunctionFactory: SCOREFUNCTION: ref2015 core.scoring.etable: Starting energy table calculation core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6) core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6) core.scoring.etable: Finished calculating energy tables. basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBPoly1D.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBFadeIntervals.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBEval.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/DonStrength.csv basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/AccStrength.csv basic.io.database: Database file opened: scoring/score_functions/rama/fd/all.ramaProb basic.io.database: Database file opened: scoring/score_functions/rama/fd/prepro.ramaProb basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.all.txt basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.gly.txt basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.pro.txt basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.valile.txt basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_n core.scoring.P_AA: shapovalov_lib::shap_p_aa_pp_smooth_level of 1( aka low_smooth ) got activated. basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/shapovalov/10deg/kappa131/a20.prop basic.io.database: Database file opened: scoring/score_functions/elec_cp_reps.dat core.scoring.elec.util: Read 40 countpair representative atoms core.pack.dunbrack.RotamerLibrary: shapovalov_lib_fixes_enable option is true. core.pack.dunbrack.RotamerLibrary: shapovalov_lib::shap_dun10_smooth_level of 1( aka lowest_smooth ) got activated. core.pack.dunbrack.RotamerLibrary: Binary rotamer library selected: /Volumes/scratch/w/rosetta/commits/rosetta/source/build/PyRosetta/macOS-12.7-arm64-arm-64bit/clang-14.0.0/python-3.9/minsizerel/build/pyrosetta/database/rotamer/shapovalov/StpDwn_0-0-0/Dunbrack10.lib.bin core.pack.dunbrack.RotamerLibrary: Using Dunbrack library binary file '/Volumes/scratch/w/rosetta/commits/rosetta/source/build/PyRosetta/macOS-12.7-arm64-arm-64bit/clang-14.0.0/python-3.9/minsizerel/build/pyrosetta/database/rotamer/shapovalov/StpDwn_0-0-0/Dunbrack10.lib.bin'. core.pack.dunbrack.RotamerLibrary: Dunbrack 2010 library took 0.070098 seconds to load from binary core.pack.pack_rotamers: built 209 rotamers at 17 positions. core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt basic.io.database: Database file opened: scoring/score_functions/InterchainPotential/interchain_env_log.txt basic.io.database: Database file opened: scoring/score_functions/InterchainPotential/interchain_pair_log.txt protocols.docking.DockingInitialPerturbation: Sliding Pose components together into contact core.chemical.GlobalResidueTypeSet: Finished initializing centroid residue type set. Created 69 residue types core.chemical.GlobalResidueTypeSet: Total time to initialize 0.011281 seconds. protocols.docking.DockingLowRes: in DockingLowRes.apply protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: /// Docking Low Res Protocol /// protocols.docking.DockingLowRes: /// /// protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50 /// protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10 /// protocols.docking.DockingLowRes: /// Scorefunction: /// protocols.docking.DockingLowRes: ScoreFunction::show(): weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2) energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 1 EnergyMethodOptions::show: method_weights: free_res EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_fa_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: hrf_dynamics_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: depc_ms_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4 protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_full: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound protocols.docking.DockingLowRes: EnergyMethodOptions::show: arg_cation_pi_his_can_be_pi: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_ref_seq_length_: 9 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_term_length_: 3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_pssm_feat_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_avg_rank_as_energy_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic" protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_natural_corrections1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_cross_chain_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_ser_to_helix_bb_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_lys_ok_with_1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: target_clash_pdb_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_prefix_: traj protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_gz_: FALSE protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_stride_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockingLowRes: HBondOptions::show: hb_max_energy: 0 protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357 protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1 protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0 protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0 protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5 protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive::::::::::::::::::: protocols.docking.DockingLowRes: Translation magnitude: 0.7 protocols.docking.DockingLowRes: Rotation magnitude: 5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.46 protocols.docking.DockingLowRes: Translation magnitude: 0.63 protocols.docking.DockingLowRes: Rotation magnitude: 4.5 protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Acceptance rate is: 0.3 protocols.docking.DockingLowRes: Translation magnitude: 0.567 protocols.docking.DockingLowRes: Rotation magnitude: 4.05 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.04 protocols.docking.DockingLowRes: Translation magnitude: 0.5103 protocols.docking.DockingLowRes: Rotation magnitude: 3.645 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.04 protocols.docking.DockingLowRes: Translation magnitude: 0.45927 protocols.docking.DockingLowRes: Rotation magnitude: 3.2805 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.413343 protocols.docking.DockingLowRes: Rotation magnitude: 2.95245 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.372009 protocols.docking.DockingLowRes: Rotation magnitude: 2.65721 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.334808 protocols.docking.DockingLowRes: Rotation magnitude: 2.39148 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.301327 protocols.docking.DockingLowRes: Rotation magnitude: 2.15234 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Acceptance rate is: 0.08 protocols.docking.DockingLowRes: Translation magnitude: 0.271194 protocols.docking.DockingLowRes: Rotation magnitude: 1.9371 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.26 core.import_pose.import_pose: File '../test/data/workshops/complex.high.pdb' automatically determined to be of type PDB core.conformation.Conformation: Found disulfide between residues 7 137 core.conformation.Conformation: Found disulfide between residues 25 41 core.conformation.Conformation: Found disulfide between residues 109 210 core.conformation.Conformation: Found disulfide between residues 116 183 core.conformation.Conformation: Found disulfide between residues 148 162 core.conformation.Conformation: Found disulfide between residues 173 197 core.conformation.Conformation: Found disulfide between residues 262 309 core.conformation.Conformation: Found disulfide between residues 356 361 protocols.docking.DockingLowRes: in DockingLowRes.apply protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: /// Docking Low Res Protocol /// protocols.docking.DockingLowRes: /// /// protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50 /// protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10 /// protocols.docking.DockingLowRes: /// Scorefunction: /// protocols.docking.DockingLowRes: ScoreFunction::show(): weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2) energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 1 EnergyMethodOptions::show: method_weights: free_res EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_fa_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: hrf_dynamics_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: depc_ms_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4 protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_full: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound protocols.docking.DockingLowRes: EnergyMethodOptions::show: arg_cation_pi_his_can_be_pi: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_ref_seq_length_: 9 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_term_length_: 3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_pssm_feat_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_avg_rank_as_energy_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic" protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_natural_corrections1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_cross_chain_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_ser_to_helix_bb_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_lys_ok_with_1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: target_clash_pdb_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_prefix_: traj protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_gz_: FALSE protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_stride_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockingLowRes: HBondOptions::show: hb_max_energy: 0 protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357 protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1 protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0 protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0 protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5 protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive::::::::::::::::::: protocols.docking.DockingLowRes: Translation magnitude: 0.7 protocols.docking.DockingLowRes: Rotation magnitude: 5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.63 protocols.docking.DockingLowRes: Rotation magnitude: 4.5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.567 protocols.docking.DockingLowRes: Rotation magnitude: 4.05 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.5103 protocols.docking.DockingLowRes: Rotation magnitude: 3.645 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.45927 protocols.docking.DockingLowRes: Rotation magnitude: 3.2805 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.413343 protocols.docking.DockingLowRes: Rotation magnitude: 2.95245 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.372009 protocols.docking.DockingLowRes: Rotation magnitude: 2.65721 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.334808 protocols.docking.DockingLowRes: Rotation magnitude: 2.39148 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.301327 protocols.docking.DockingLowRes: Rotation magnitude: 2.15234 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.271194 protocols.docking.DockingLowRes: Rotation magnitude: 1.9371 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: in DockingLowRes.apply protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: /// Docking Low Res Protocol /// protocols.docking.DockingLowRes: /// /// protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50 /// protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10 /// protocols.docking.DockingLowRes: /// Scorefunction: /// protocols.docking.DockingLowRes: ScoreFunction::show(): weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2) energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 1 EnergyMethodOptions::show: method_weights: free_res EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_fa_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: hrf_dynamics_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: depc_ms_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4 protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_full: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound protocols.docking.DockingLowRes: EnergyMethodOptions::show: arg_cation_pi_his_can_be_pi: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_ref_seq_length_: 9 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_term_length_: 3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_pssm_feat_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_avg_rank_as_energy_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic" protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_natural_corrections1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_cross_chain_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_ser_to_helix_bb_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_lys_ok_with_1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: target_clash_pdb_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_prefix_: traj protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_gz_: FALSE protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_stride_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockingLowRes: HBondOptions::show: hb_max_energy: 0 protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357 protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1 protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0 protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0 protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5 protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive::::::::::::::::::: protocols.docking.DockingLowRes: Translation magnitude: 0.7 protocols.docking.DockingLowRes: Rotation magnitude: 5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.63 protocols.docking.DockingLowRes: Rotation magnitude: 4.5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.567 protocols.docking.DockingLowRes: Rotation magnitude: 4.05 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.5103 protocols.docking.DockingLowRes: Rotation magnitude: 3.645 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.45927 protocols.docking.DockingLowRes: Rotation magnitude: 3.2805 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.413343 protocols.docking.DockingLowRes: Rotation magnitude: 2.95245 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.372009 protocols.docking.DockingLowRes: Rotation magnitude: 2.65721 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.334808 protocols.docking.DockingLowRes: Rotation magnitude: 2.39148 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.301327 protocols.docking.DockingLowRes: Rotation magnitude: 2.15234 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.271194 protocols.docking.DockingLowRes: Rotation magnitude: 1.9371 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: in DockingLowRes.apply protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: /// Docking Low Res Protocol /// protocols.docking.DockingLowRes: /// /// protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50 /// protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10 /// protocols.docking.DockingLowRes: /// Scorefunction: /// protocols.docking.DockingLowRes: ScoreFunction::show(): weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2) energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 1 EnergyMethodOptions::show: method_weights: free_res EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_fa_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: hrf_dynamics_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: depc_ms_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4 protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_full: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound protocols.docking.DockingLowRes: EnergyMethodOptions::show: arg_cation_pi_his_can_be_pi: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_ref_seq_length_: 9 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_term_length_: 3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_pssm_feat_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_avg_rank_as_energy_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic" protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_natural_corrections1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_cross_chain_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_ser_to_helix_bb_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_lys_ok_with_1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: target_clash_pdb_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_prefix_: traj protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_gz_: FALSE protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_stride_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockingLowRes: HBondOptions::show: hb_max_energy: 0 protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357 protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1 protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0 protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0 protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5 protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive::::::::::::::::::: protocols.docking.DockingLowRes: Translation magnitude: 0.7 protocols.docking.DockingLowRes: Rotation magnitude: 5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.06 protocols.docking.DockingLowRes: Translation magnitude: 0.63 protocols.docking.DockingLowRes: Rotation magnitude: 4.5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.567 protocols.docking.DockingLowRes: Rotation magnitude: 4.05 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.5103 protocols.docking.DockingLowRes: Rotation magnitude: 3.645 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.45927 protocols.docking.DockingLowRes: Rotation magnitude: 3.2805 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.413343 protocols.docking.DockingLowRes: Rotation magnitude: 2.95245 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.04 protocols.docking.DockingLowRes: Translation magnitude: 0.372009 protocols.docking.DockingLowRes: Rotation magnitude: 2.65721 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.04 protocols.docking.DockingLowRes: Translation magnitude: 0.334808 protocols.docking.DockingLowRes: Rotation magnitude: 2.39148 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.301327 protocols.docking.DockingLowRes: Rotation magnitude: 2.15234 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.271194 protocols.docking.DockingLowRes: Rotation magnitude: 1.9371 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.06 protocols.docking.DockingLowRes: in DockingLowRes.apply protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: /// Docking Low Res Protocol /// protocols.docking.DockingLowRes: /// /// protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50 /// protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10 /// protocols.docking.DockingLowRes: /// Scorefunction: /// protocols.docking.DockingLowRes: ScoreFunction::show(): weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2) energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 1 EnergyMethodOptions::show: method_weights: free_res EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_fa_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: hrf_dynamics_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: depc_ms_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4 protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_full: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound protocols.docking.DockingLowRes: EnergyMethodOptions::show: arg_cation_pi_his_can_be_pi: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_ref_seq_length_: 9 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_term_length_: 3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_pssm_feat_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_avg_rank_as_energy_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic" protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_natural_corrections1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_cross_chain_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_ser_to_helix_bb_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_lys_ok_with_1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: target_clash_pdb_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_prefix_: traj protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_gz_: FALSE protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_stride_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockingLowRes: HBondOptions::show: hb_max_energy: 0 protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357 protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1 protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0 protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0 protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5 protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive::::::::::::::::::: protocols.docking.DockingLowRes: Translation magnitude: 0.7 protocols.docking.DockingLowRes: Rotation magnitude: 5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.63 protocols.docking.DockingLowRes: Rotation magnitude: 4.5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.567 protocols.docking.DockingLowRes: Rotation magnitude: 4.05 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.04 protocols.docking.DockingLowRes: Translation magnitude: 0.5103 protocols.docking.DockingLowRes: Rotation magnitude: 3.645 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.45927 protocols.docking.DockingLowRes: Rotation magnitude: 3.2805 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.413343 protocols.docking.DockingLowRes: Rotation magnitude: 2.95245 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.372009 protocols.docking.DockingLowRes: Rotation magnitude: 2.65721 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.334808 protocols.docking.DockingLowRes: Rotation magnitude: 2.39148 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.301327 protocols.docking.DockingLowRes: Rotation magnitude: 2.15234 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Acceptance rate is: 0.06 protocols.docking.DockingLowRes: Translation magnitude: 0.271194 protocols.docking.DockingLowRes: Rotation magnitude: 1.9371 protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.1 protocols.docking.DockingLowRes: in DockingLowRes.apply protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: /// Docking Low Res Protocol /// protocols.docking.DockingLowRes: /// /// protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50 /// protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10 /// protocols.docking.DockingLowRes: /// Scorefunction: /// protocols.docking.DockingLowRes: ScoreFunction::show(): weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2) energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 1 EnergyMethodOptions::show: method_weights: free_res EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_fa_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: hrf_dynamics_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: depc_ms_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4 protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_full: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound protocols.docking.DockingLowRes: EnergyMethodOptions::show: arg_cation_pi_his_can_be_pi: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_ref_seq_length_: 9 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_term_length_: 3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_pssm_feat_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_avg_rank_as_energy_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic" protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_natural_corrections1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_cross_chain_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_ser_to_helix_bb_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_lys_ok_with_1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: target_clash_pdb_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_prefix_: traj protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_gz_: FALSE protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_stride_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockingLowRes: HBondOptions::show: hb_max_energy: 0 protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357 protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1 protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0 protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0 protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5 protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive::::::::::::::::::: protocols.docking.DockingLowRes: Translation magnitude: 0.7 protocols.docking.DockingLowRes: Rotation magnitude: 5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.63 protocols.docking.DockingLowRes: Rotation magnitude: 4.5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.1 protocols.docking.DockingLowRes: Translation magnitude: 0.567 protocols.docking.DockingLowRes: Rotation magnitude: 4.05 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.5103 protocols.docking.DockingLowRes: Rotation magnitude: 3.645 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.45927 protocols.docking.DockingLowRes: Rotation magnitude: 3.2805 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.413343 protocols.docking.DockingLowRes: Rotation magnitude: 2.95245 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.372009 protocols.docking.DockingLowRes: Rotation magnitude: 2.65721 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.334808 protocols.docking.DockingLowRes: Rotation magnitude: 2.39148 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.301327 protocols.docking.DockingLowRes: Rotation magnitude: 2.15234 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.04 protocols.docking.DockingLowRes: Translation magnitude: 0.271194 protocols.docking.DockingLowRes: Rotation magnitude: 1.9371 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.06 protocols.docking.DockingLowRes: in DockingLowRes.apply protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: /// Docking Low Res Protocol /// protocols.docking.DockingLowRes: /// /// protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50 /// protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10 /// protocols.docking.DockingLowRes: /// Scorefunction: /// protocols.docking.DockingLowRes: ScoreFunction::show(): weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2) energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 1 EnergyMethodOptions::show: method_weights: free_res EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_fa_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: hrf_dynamics_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: depc_ms_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4 protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_full: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound protocols.docking.DockingLowRes: EnergyMethodOptions::show: arg_cation_pi_his_can_be_pi: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_ref_seq_length_: 9 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_term_length_: 3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_pssm_feat_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_avg_rank_as_energy_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic" protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_natural_corrections1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_cross_chain_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_ser_to_helix_bb_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_lys_ok_with_1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: target_clash_pdb_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_prefix_: traj protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_gz_: FALSE protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_stride_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockingLowRes: HBondOptions::show: hb_max_energy: 0 protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357 protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1 protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0 protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0 protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5 protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive::::::::::::::::::: protocols.docking.DockingLowRes: Translation magnitude: 0.7 protocols.docking.DockingLowRes: Rotation magnitude: 5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.63 protocols.docking.DockingLowRes: Rotation magnitude: 4.5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.567 protocols.docking.DockingLowRes: Rotation magnitude: 4.05 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.06 protocols.docking.DockingLowRes: Translation magnitude: 0.5103 protocols.docking.DockingLowRes: Rotation magnitude: 3.645 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.04 protocols.docking.DockingLowRes: Translation magnitude: 0.45927 protocols.docking.DockingLowRes: Rotation magnitude: 3.2805 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.413343 protocols.docking.DockingLowRes: Rotation magnitude: 2.95245 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Acceptance rate is: 0.04 protocols.docking.DockingLowRes: Translation magnitude: 0.372009 protocols.docking.DockingLowRes: Rotation magnitude: 2.65721 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.334808 protocols.docking.DockingLowRes: Rotation magnitude: 2.39148 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.04 protocols.docking.DockingLowRes: Translation magnitude: 0.301327 protocols.docking.DockingLowRes: Rotation magnitude: 2.15234 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.271194 protocols.docking.DockingLowRes: Rotation magnitude: 1.9371 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.04 protocols.docking.DockingLowRes: in DockingLowRes.apply protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: /// Docking Low Res Protocol /// protocols.docking.DockingLowRes: /// /// protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50 /// protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10 /// protocols.docking.DockingLowRes: /// Scorefunction: /// protocols.docking.DockingLowRes: ScoreFunction::show(): weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2) energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 1 EnergyMethodOptions::show: method_weights: free_res EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_fa_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: hrf_dynamics_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: depc_ms_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4 protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_full: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound protocols.docking.DockingLowRes: EnergyMethodOptions::show: arg_cation_pi_his_can_be_pi: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_ref_seq_length_: 9 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_term_length_: 3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_pssm_feat_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_avg_rank_as_energy_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic" protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_natural_corrections1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_cross_chain_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_ser_to_helix_bb_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_lys_ok_with_1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: target_clash_pdb_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_prefix_: traj protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_gz_: FALSE protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_stride_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockingLowRes: HBondOptions::show: hb_max_energy: 0 protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357 protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1 protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0 protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0 protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5 protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive::::::::::::::::::: protocols.docking.DockingLowRes: Translation magnitude: 0.7 protocols.docking.DockingLowRes: Rotation magnitude: 5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.63 protocols.docking.DockingLowRes: Rotation magnitude: 4.5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.567 protocols.docking.DockingLowRes: Rotation magnitude: 4.05 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.5103 protocols.docking.DockingLowRes: Rotation magnitude: 3.645 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.45927 protocols.docking.DockingLowRes: Rotation magnitude: 3.2805 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.413343 protocols.docking.DockingLowRes: Rotation magnitude: 2.95245 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.04 protocols.docking.DockingLowRes: Translation magnitude: 0.372009 protocols.docking.DockingLowRes: Rotation magnitude: 2.65721 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.334808 protocols.docking.DockingLowRes: Rotation magnitude: 2.39148 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.301327 protocols.docking.DockingLowRes: Rotation magnitude: 2.15234 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.271194 protocols.docking.DockingLowRes: Rotation magnitude: 1.9371 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.06 protocols.docking.DockingLowRes: in DockingLowRes.apply protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: /// Docking Low Res Protocol /// protocols.docking.DockingLowRes: /// /// protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50 /// protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10 /// protocols.docking.DockingLowRes: /// Scorefunction: /// protocols.docking.DockingLowRes: ScoreFunction::show(): weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2) energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 1 EnergyMethodOptions::show: method_weights: free_res EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_fa_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: hrf_dynamics_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: depc_ms_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4 protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_full: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound protocols.docking.DockingLowRes: EnergyMethodOptions::show: arg_cation_pi_his_can_be_pi: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_ref_seq_length_: 9 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_term_length_: 3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_pssm_feat_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_avg_rank_as_energy_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic" protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_natural_corrections1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_cross_chain_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_ser_to_helix_bb_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_lys_ok_with_1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: target_clash_pdb_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_prefix_: traj protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_gz_: FALSE protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_stride_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockingLowRes: HBondOptions::show: hb_max_energy: 0 protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357 protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1 protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0 protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0 protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5 protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive::::::::::::::::::: protocols.docking.DockingLowRes: Translation magnitude: 0.7 protocols.docking.DockingLowRes: Rotation magnitude: 5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.63 protocols.docking.DockingLowRes: Rotation magnitude: 4.5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.08 protocols.docking.DockingLowRes: Translation magnitude: 0.567 protocols.docking.DockingLowRes: Rotation magnitude: 4.05 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.5103 protocols.docking.DockingLowRes: Rotation magnitude: 3.645 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.45927 protocols.docking.DockingLowRes: Rotation magnitude: 3.2805 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.413343 protocols.docking.DockingLowRes: Rotation magnitude: 2.95245 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.372009 protocols.docking.DockingLowRes: Rotation magnitude: 2.65721 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.04 protocols.docking.DockingLowRes: Translation magnitude: 0.334808 protocols.docking.DockingLowRes: Rotation magnitude: 2.39148 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.301327 protocols.docking.DockingLowRes: Rotation magnitude: 2.15234 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.271194 protocols.docking.DockingLowRes: Rotation magnitude: 1.9371 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: in DockingLowRes.apply protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: /// Docking Low Res Protocol /// protocols.docking.DockingLowRes: /// /// protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50 /// protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10 /// protocols.docking.DockingLowRes: /// Scorefunction: /// protocols.docking.DockingLowRes: ScoreFunction::show(): weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2) energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 1 EnergyMethodOptions::show: method_weights: free_res EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_fa_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: hrf_dynamics_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: depc_ms_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4 protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_full: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound protocols.docking.DockingLowRes: EnergyMethodOptions::show: arg_cation_pi_his_can_be_pi: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_ref_seq_length_: 9 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_term_length_: 3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_pssm_feat_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_avg_rank_as_energy_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic" protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_natural_corrections1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_cross_chain_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_ser_to_helix_bb_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_lys_ok_with_1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: target_clash_pdb_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_prefix_: traj protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_gz_: FALSE protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_stride_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockingLowRes: HBondOptions::show: hb_max_energy: 0 protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357 protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1 protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0 protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0 protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5 protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive::::::::::::::::::: protocols.docking.DockingLowRes: Translation magnitude: 0.7 protocols.docking.DockingLowRes: Rotation magnitude: 5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.08 protocols.docking.DockingLowRes: Translation magnitude: 0.63 protocols.docking.DockingLowRes: Rotation magnitude: 4.5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.567 protocols.docking.DockingLowRes: Rotation magnitude: 4.05 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.04 protocols.docking.DockingLowRes: Translation magnitude: 0.5103 protocols.docking.DockingLowRes: Rotation magnitude: 3.645 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.08 protocols.docking.DockingLowRes: Translation magnitude: 0.45927 protocols.docking.DockingLowRes: Rotation magnitude: 3.2805 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.413343 protocols.docking.DockingLowRes: Rotation magnitude: 2.95245 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.372009 protocols.docking.DockingLowRes: Rotation magnitude: 2.65721 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.334808 protocols.docking.DockingLowRes: Rotation magnitude: 2.39148 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.301327 protocols.docking.DockingLowRes: Rotation magnitude: 2.15234 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: Translation magnitude: 0.271194 protocols.docking.DockingLowRes: Rotation magnitude: 1.9371 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 protocols.docking.DockingLowRes: in DockingLowRes.apply protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: /// Docking Low Res Protocol /// protocols.docking.DockingLowRes: /// /// protocols.docking.DockingLowRes: /// Centroid Inner Cycles: 50 /// protocols.docking.DockingLowRes: /// Centroid Outer Cycles: 10 /// protocols.docking.DockingLowRes: /// Scorefunction: /// protocols.docking.DockingLowRes: ScoreFunction::show(): weights: (interchain_pair 1) (interchain_vdw 1) (interchain_env 1) (interchain_contact 2) energy_method_options: EnergyMethodOptions::show: aa_composition_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: mhc_epitope_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: netcharge_setup_files: protocols.docking.DockingLowRes: EnergyMethodOptions::show: aspartimide_penalty_value: 25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT analytic_etable_evaluation: 1 EnergyMethodOptions::show: method_weights: free_res EnergyMethodOptions::show: unfolded_energies_type: UNFOLDED_SCORE12 protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_label_type: SPLIT_UNFOLDED_MM protocols.docking.DockingLowRes: EnergyMethodOptions::show: split_unfolded_value_type: SPLIT_UNFOLDED_BOLTZ protocols.docking.DockingLowRes: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: covalent_labeling_fa_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: hrf_dynamics_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: depc_ms_input: protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_protein_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_RNA_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_RNA_protein_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_monomer_fa_elec: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_max_dis: 5.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_min_dis: 1.6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_die: 10 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_no_dis_dep_die: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_die: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D: 80 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_D0: 6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_sigmoidal_S: 0.4 protocols.docking.DockingLowRes: EnergyMethodOptions::show: smooth_fa_elec: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_type: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param1: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_param2: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_fade_hbond: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: grp_cpfxn: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: elec_group_file: /scoring/score_functions/elec_group_def.dat protocols.docking.DockingLowRes: EnergyMethodOptions::show: grpelec_context_dependent: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_polarization: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: use_gen_kirkwood: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: protein_dielectric: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: water_dielectric: 78.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: exclude_intra_res_protein: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_hybrid: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: count_pair_full: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: put_intra_into_total: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_interres_path_distance_cutoff: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: geom_sol_intrares_path_distance_cutoff: true protocols.docking.DockingLowRes: EnergyMethodOptions::show: eval_intrares_elec_ST_only: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: envsmooth_zero_negatives: false protocols.docking.DockingLowRes: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615 protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_bound_tag: bound protocols.docking.DockingLowRes: EnergyMethodOptions::show: pb_unbound_tag: unbound protocols.docking.DockingLowRes: EnergyMethodOptions::show: arg_cation_pi_his_can_be_pi: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_wat_penalty: 1.221 protocols.docking.DockingLowRes: EnergyMethodOptions::show: ordered_pt_wat_penalty: 2.709 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_ref_seq_length_: 9 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_term_length_: 3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_pssm_feat_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_scorecut_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_avg_rank_as_energy_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_aa_matrix_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_list_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_defined_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: nmer_svm_rank_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_containing_cones_cutoff_:6 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_distance_cutoff_: 8 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_cone_dotproduct_cutoff_: 0.1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_grid_padding_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_voxel_size_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: voids_penalty_energy_disabled_except_during_packing_: TRUE protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_bonus_ramping_function_: "quadratic" protocols.docking.DockingLowRes: EnergyMethodOptions::show: hbnet_max_network_size_: 0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_energy_threshold_: -0.25 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_atomic_depth_: 4.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_probe_radius_: 2.3 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_burial_resolution_: 0.5 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_oversat_penalty_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_assume_const_backbone_:1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_natural_corrections1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_cross_chain_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_hbond_bonus_ser_to_helix_bb_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: approximate_buried_unsat_penalty_lys_ok_with_1_:0 protocols.docking.DockingLowRes: EnergyMethodOptions::show: target_clash_pdb_: protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_prefix_: traj protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_gz_: FALSE protocols.docking.DockingLowRes: EnergyMethodOptions::show: dump_trajectory_stride_: 1 protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_central_atoms_to_score: protocols.docking.DockingLowRes: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none protocols.docking.DockingLowRes: HBondOptions::show: hb_max_energy: 0 protocols.docking.DockingLowRes: HBondOptions::show: exclude_DNA_DNA: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_protein_: true protocols.docking.DockingLowRes: HBondOptions::show: exclude_intra_res_RNA_: false protocols.docking.DockingLowRes: HBondOptions::show: put_intra_into_total_: false protocols.docking.DockingLowRes: HBondOptions::show: exclude_self_hbonds: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: use_hb_env_dep_DNA: true protocols.docking.DockingLowRes: HBondOptions::show: smooth_hb_env_dep: true protocols.docking.DockingLowRes: HBondOptions::show: bb_donor_acceptor_check: true protocols.docking.DockingLowRes: HBondOptions::show: decompose_bb_hb_into_pair_energies: false protocols.docking.DockingLowRes: HBondOptions::show: params_database_tag_: ref2015_params protocols.docking.DockingLowRes: HBondOptions::show: use_sp2_chi_penalty_: true protocols.docking.DockingLowRes: HBondOptions::show: sp2_BAH180_rise_: 0.75 protocols.docking.DockingLowRes: HBondOptions::show: sp2_outer_width_: 0.357 protocols.docking.DockingLowRes: HBondOptions::show: measure_sp3acc_BAH_from_hvy_: true protocols.docking.DockingLowRes: HBondOptions::show: fade_energy_: 1 protocols.docking.DockingLowRes: HBondOptions::show: exclude_ether_oxygens_: 0 protocols.docking.DockingLowRes: HBondOptions::show: Mbhbond: false protocols.docking.DockingLowRes: HbondOptions::show: mphbond: false protocols.docking.DockingLowRes: HBondOptions::show: hbond_energy_shift: 0 protocols.docking.DockingLowRes: HBondOptions::show: water_hybrid_sf: false protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: syn_G_potential_bonus: 0 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: torsion_potential: ps_04282011 protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: suiteness_bonus: Richardson protocols.docking.DockingLowRes: RNA_EnergyMethodOptions::show: rna_base_pair_xy_filename: scoring/rna/rna_base_pair_xy.dat protocols.docking.DockingLowRes: FreeDOF_Options::show: free_suite_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_2HOprime_bonus: -0.5 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_sugar_bonus: -1 protocols.docking.DockingLowRes: FreeDOF_Options::show: pack_phosphate_penalty: 0.25 protocols.docking.DockingLowRes: FreeDOF_Options::show: free_side_chain_bonus: -0.5 protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: protocols.docking.DockingLowRes: //////////////////////////////////////////////////////////////////////////////// protocols.docking.DockingLowRes: ::::::::::::::::::Centroid Adaptive::::::::::::::::::: protocols.docking.DockingLowRes: Translation magnitude: 0.7 protocols.docking.DockingLowRes: Rotation magnitude: 5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.63 protocols.docking.DockingLowRes: Rotation magnitude: 4.5 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.567 protocols.docking.DockingLowRes: Rotation magnitude: 4.05 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.5103 protocols.docking.DockingLowRes: Rotation magnitude: 3.645 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.45927 protocols.docking.DockingLowRes: Rotation magnitude: 3.2805 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.413343 protocols.docking.DockingLowRes: Rotation magnitude: 2.95245 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.04 protocols.docking.DockingLowRes: Translation magnitude: 0.372009 protocols.docking.DockingLowRes: Rotation magnitude: 2.65721 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0 protocols.docking.DockingLowRes: Translation magnitude: 0.334808 protocols.docking.DockingLowRes: Rotation magnitude: 2.39148 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.06 protocols.docking.DockingLowRes: Translation magnitude: 0.301327 protocols.docking.DockingLowRes: Rotation magnitude: 2.15234 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid┌──────────────────────────────────────────────────────────────────────────────┐ │ PyRosetta-4 │ │ Created in JHU by Sergey Lyskov and PyRosetta Team │ │ (C) Copyright Rosetta Commons Member Institutions │ │ │ │ NOTE: USE OF PyRosetta FOR COMMERCIAL PURPOSES REQUIRE PURCHASE OF A LICENSE │ │ See LICENSE.PyRosetta.md or email license@uw.edu for details │ └──────────────────────────────────────────────────────────────────────────────┘ PyRosetta-4 2024 [Rosetta devel 2024.35.post.dev+3.HEAD.a7668ba53e7e4bd3385a3b1f40680bc2e2af438d 2024-09-07T10:41:45] retrieved from: git@github.com:RosettaCommons/rosetta.git FOLD_TREE EDGE 1 223 -1 EDGE 1 224 1 EDGE 224 392 -1 FOLD_TREE EDGE 1 179 -1 EDGE 179 223 -1 EDGE 179 252 1 EDGE 252 224 -1 EDGE 252 392 -1 0.6617414920971024 -0.03498899193021877 -0.7489151941847656 0.003717401098845607 -0.9987450200787071 0.04994562840786065 -0.7497228678426275 -0.03583511283215074 -0.6607809516943858 -33.9748,-19.594,20.9708 _____ Check point 1 _____ Check point 2 _____ Check point 3 Making MinMover... Done Applying MinMover! 7.830221176147461 14.240274487771014 Working on decoy: /var/folders/z2/6n1bppgd5sz5zcr9msfmqqk80002cr/T/tmpsf5zq3hv_1.pdb Working on decoy: /var/folders/z2/6n1bppgd5sz5zcr9msfmqqk80002cr/T/tmpsf5zq3hv_2.pdb Working on decoy: /var/folders/z2/6n1bppgd5sz5zcr9msfmqqk80002cr/T/tmpsf5zq3hv_9.pdb Working on decoy: /var/folders/z2/6n1bppgd5sz5zcr9msfmqqk80002cr/T/tmpsf5zq3hv_5.pdb Working on decoy: /var/folders/z2/6n1bppgd5sz5zcr9msfmqqk80002cr/T/tmpsf5zq3hv_8.pdb Working on decoy: /var/folders/z2/6n1bppgd5sz5zcr9msfmqqk80002cr/T/tmpsf5zq3hv_0.pdb Working on decoy: /var/folders/z2/6n1bppgd5sz5zcr9msfmqqk80002cr/T/tmpsf5zq3hv_3.pdb Working on decoy: /var/folders/z2/6n1bppgd5sz5zcr9msfmqqk80002cr/T/tmpsf5zq3hv_7.pdb Working on decoy: /var/folders/z2/6n1bppgd5sz5zcr9msfmqqk80002cr/T/tmpsf5zq3hv_6.pdb Working on decoy: /var/folders/z2/6n1bppgd5sz5zcr9msfmqqk80002cr/T/tmpsf5zq3hv_4.pdb done Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.08 protocols.docking.DockingLowRes: Translation magnitude: 0.271194 protocols.docking.DockingLowRes: Rotation magnitude: 1.9371 protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Accepted protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Rigid Body Perturbation Rejected protocols.docking.DockingLowRes: Acceptance rate is: 0.02 core.scoring.ScoreFunctionFactory: SCOREFUNCTION: ref2015 core.scoring.ScoreFunctionFactory: SCOREFUNCTION: ref2015 core.scoring.ScoreFunctionFactory: SCOREFUNCTION: ref2015 Finished Workshop7test in 0:00:21.074096

Workshop7test sub-test description