Branch: rosetta:commits 「revision: №20405」
Test: linux.clang.integration.release_debug_no_symbols
SubTest: fiber_diffraction_fad
SubTest files: 「file-system-view」
Daemon: hojo-3    
State: fiber_diffraction_fad

Brief Diff: Files /home/benchmark/working_dir/main:62108/fiber_diffraction_fad/log and /home/benchmark/working_dir/commits:20405/fiber_diffraction_fad/log differ Full Diff: diff -r '--exclude=command.sh' '--exclude=command.mpi.sh' '--exclude=observers' '--exclude=*.ignore' /home/benchmark/working_dir/main:62108/fiber_diffraction_fad/log /home/benchmark/working_dir/commits:20405/fiber_diffraction_fad/log 7556a7557 > core.chemical.Patch: Reading patch file: ROSETTA/database/chemical/residue_type_sets/fa_standard/patches/branching/C-linked_conjugation.txt 7579a7581 > core.chemical.Patch: Reading patch file: ROSETTA/database/chemical/residue_type_sets/fa_standard/patches/Nterm2_Oxobutrylation.txt 17458a17461,17462 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ALA > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ALA:NtermProteinFull 17504a17509,17510 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ALA > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ALA:NtermProteinFull 17716a17723,17724 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue CYS > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue CYS:NtermProteinFull 17762a17771,17772 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue CYS > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue CYS:NtermProteinFull 17974a17985,17986 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ASP > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ASP:NtermProteinFull 18020a18033,18034 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ASP > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ASP:NtermProteinFull 18232a18247,18248 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue GLU > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue GLU:NtermProteinFull 18278a18295,18296 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue GLU > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue GLU:NtermProteinFull 18490a18509,18510 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue PHE > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue PHE:NtermProteinFull 18536a18557,18558 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue PHE > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue PHE:NtermProteinFull 18749a18772,18773 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue GLY > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue GLY:NtermProteinFull 18795a18820,18821 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue GLY > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue GLY:NtermProteinFull 19007a19034,19035 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue HIS > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue HIS:NtermProteinFull 19053a19082,19083 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue HIS > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue HIS:NtermProteinFull 19265a19296,19297 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue HIS_D > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue HIS_D:NtermProteinFull 19311a19344,19345 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue HIS_D > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue HIS_D:NtermProteinFull 19523a19558,19559 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ILE > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ILE:NtermProteinFull 19569a19606,19607 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ILE > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ILE:NtermProteinFull 19781a19820,19821 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue LYS > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue LYS:NtermProteinFull 19827a19868,19869 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue LYS > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue LYS:NtermProteinFull 20039a20082,20083 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue LEU > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue LEU:NtermProteinFull 20085a20130,20131 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue LEU > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue LEU:NtermProteinFull 20277a20324,20325 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue MET > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue MET:NtermProteinFull 20323a20372,20373 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue MET > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue MET:NtermProteinFull 20535a20586,20587 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ASN > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ASN:NtermProteinFull 20581a20634,20635 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ASN > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ASN:NtermProteinFull 20803a20858,20859 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue PRO > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue PRO:NtermProteinFull 20849a20906,20907 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue PRO > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue PRO:NtermProteinFull 21061a21120,21121 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue GLN > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue GLN:NtermProteinFull 21107a21168,21169 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue GLN > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue GLN:NtermProteinFull 21319a21382,21383 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ARG > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ARG:NtermProteinFull 21365a21430,21431 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ARG > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ARG:NtermProteinFull 21577a21644,21645 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue SER > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue SER:NtermProteinFull 21623a21692,21693 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue SER > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue SER:NtermProteinFull 21835a21906,21907 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue THR > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue THR:NtermProteinFull 21881a21954,21955 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue THR > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue THR:NtermProteinFull 22093a22168,22169 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue VAL > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue VAL:NtermProteinFull 22139a22216,22217 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue VAL > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue VAL:NtermProteinFull 22351a22430,22431 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue TRP > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue TRP:NtermProteinFull 22397a22478,22479 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue TRP > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue TRP:NtermProteinFull 22609a22692,22693 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue TYR > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue TYR:NtermProteinFull 22655a22740,22741 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue TYR > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue TYR:NtermProteinFull 22792a22879 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ALA 22815a22903 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ALA 22916a23005 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue CYS 22939a23029 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue CYS 23040a23131 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ASP 23063a23155 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ASP 23164a23257 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue GLU 23187a23281 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue GLU 23288a23383 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue PHE 23311a23407 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue PHE 23412a23509 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue GLY 23435a23533 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue GLY 23536a23635 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue HIS 23559a23659 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue HIS 23660a23761 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue HIS_D 23683a23785 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue HIS_D 23784a23887 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ILE 23807a23911 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ILE 23908a24013 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue LYS 23931a24037 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue LYS 24032a24139 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue LEU 24055a24163 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue LEU 24156a24265 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue MET 24179a24289 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue MET 24280a24391 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ASN 24303a24415 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ASN 24404a24517 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue PRO 24427a24541 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue PRO 24528a24643 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue GLN 24551a24667 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue GLN 24652a24769 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ARG 24675a24793 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ARG 24776a24895 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue SER 24799a24919 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue SER 24900a25021 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue THR 24923a25045 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue THR 25024a25147 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue VAL 25047a25171 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue VAL 25148a25273 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue TRP 25171a25297 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue TRP 25272a25399 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue TYR 25295a25423 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue TYR 25615a25744,25745 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ALA > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ALA:CtermProteinFull 25661a25792,25793 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ALA > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ALA:CtermProteinFull 25870a26003,26004 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue CYS > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue CYS:CtermProteinFull 25916a26051,26052 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue CYS > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue CYS:CtermProteinFull 26125a26262,26263 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ASP > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ASP:CtermProteinFull 26171a26310,26311 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ASP > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ASP:CtermProteinFull 26380a26521,26522 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue GLU > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue GLU:CtermProteinFull 26426a26569,26570 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue GLU > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue GLU:CtermProteinFull 26635a26780,26781 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue PHE > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue PHE:CtermProteinFull 26681a26828,26829 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue PHE > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue PHE:CtermProteinFull 26874a27023,27024 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue GLY > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue GLY:CtermProteinFull 26920a27071,27072 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue GLY > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue GLY:CtermProteinFull 27129a27282,27283 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue HIS > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue HIS:CtermProteinFull 27175a27330,27331 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue HIS > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue HIS:CtermProteinFull 27384a27541,27542 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue HIS_D > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue HIS_D:CtermProteinFull 27430a27589,27590 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue HIS_D > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue HIS_D:CtermProteinFull 27639a27800,27801 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ILE > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ILE:CtermProteinFull 27685a27848,27849 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ILE > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ILE:CtermProteinFull 27894a28059,28060 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue LYS > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue LYS:CtermProteinFull 27940a28107,28108 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue LYS > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue LYS:CtermProteinFull 28149a28318,28319 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue LEU > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue LEU:CtermProteinFull 28195a28366,28367 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue LEU > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue LEU:CtermProteinFull 28404a28577,28578 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue MET > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue MET:CtermProteinFull 28450a28625,28626 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue MET > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue MET:CtermProteinFull 28659a28836,28837 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ASN > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ASN:CtermProteinFull 28705a28884,28885 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ASN > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ASN:CtermProteinFull 28914a29095,29096 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue PRO > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue PRO:CtermProteinFull 28960a29143,29144 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue PRO > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue PRO:CtermProteinFull 29169a29354,29355 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue GLN > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue GLN:CtermProteinFull 29215a29402,29403 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue GLN > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue GLN:CtermProteinFull 29424a29613,29614 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ARG > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue ARG:CtermProteinFull 29470a29661,29662 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ARG > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue ARG:CtermProteinFull 29679a29872,29873 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue SER > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue SER:CtermProteinFull 29725a29920,29921 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue SER > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue SER:CtermProteinFull 29934a30131,30132 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue THR > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue THR:CtermProteinFull 29980a30179,30180 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue THR > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue THR:CtermProteinFull 30189a30390,30391 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue VAL > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue VAL:CtermProteinFull 30235a30438,30439 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue VAL > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue VAL:CtermProteinFull 30444a30649,30650 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue TRP > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue TRP:CtermProteinFull 30490a30697,30698 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue TRP > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue TRP:CtermProteinFull 30699a30908,30909 > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue TYR > core.chemical.ResidueTypeFinder: Checking if patch C-conjugated applies to residue TYR:CtermProteinFull 30745a30956,30957 > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue TYR > core.chemical.ResidueTypeFinder: Checking if patch Nterm2_Oxobutrylation applies to residue TYR:CtermProteinFull