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Revisions №62276

branch: rosetta:main 「№62276」
Commited by: lyskov-ai
GitHub commit link: 「b5873f7d8ea3c967」
Difference from previous tested commit:  code diff
Commit date: 2026-07-08 14:14:49
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python314.PyRosetta.unit m1.clang.python38.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python311.PyRosetta.unit mac.clang.python312.PyRosetta.unit mac.clang.python313.PyRosetta.unit mac.clang.python314.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.clang.python310.PyRosetta.unit ubuntu-20.04.clang.python311.PyRosetta.unit ubuntu-20.04.clang.python312.PyRosetta.unit ubuntu-20.04.clang.python313.PyRosetta.unit ubuntu-20.04.clang.python314.PyRosetta.unit 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ubuntu.clang.python312.build.debug ubuntu.clang.python313.build.debug ubuntu.clang.python314.build.debug ubuntu.clang.python39.build.debug ubuntu.gcc.bcl.build.debug ubuntu.gcc.build.debug ubuntu.gcc.cxx11thread.serialization.build.debug ubuntu.gcc.python310.build.debug ubuntu.gcc.python311.build.debug ubuntu.gcc.python312.build.debug ubuntu.gcc.python313.build.debug ubuntu.gcc.python314.build.debug ubuntu.gcc.python39.build.debug build.header build.levels build.ninja_debug graphics gcc-10.gcc.build.release gcc-10.gcc.cxx11thread.serialization.build.release gcc-11.gcc.build.release gcc-11.gcc.cxx11thread.serialization.build.release gcc-12.gcc.build.release gcc-13.gcc.build.release gcc-9.gcc.build.release gcc-9.gcc.cxx11thread.serialization.build.release linux.clang.python310.build.release linux.clang.python311.build.release linux.clang.python312.build.release linux.clang.python39.build.release linux.gcc.python310.build.release linux.gcc.python311.build.release 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ubuntu-24.04.clang.cxx11thread.serialization.build.release ubuntu-24.04.gcc.build.release ubuntu-24.04.gcc.cxx11thread.serialization.build.release ubuntu.clang.build.release ubuntu.clang.cxx11thread.serialization.build.release ubuntu.clang.python310.build.release ubuntu.clang.python311.build.release ubuntu.clang.python312.build.release ubuntu.clang.python313.build.release ubuntu.clang.python314.build.release ubuntu.clang.python39.build.release ubuntu.gcc.build.release ubuntu.gcc.cxx11thread.serialization.build.release ubuntu.gcc.python310.build.release ubuntu.gcc.python311.build.release ubuntu.gcc.python313.build.release ubuntu.gcc.python314.build.release ubuntu.gcc.python39.build.release beautification code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.torch integration.tutorials integration maintenance.documentation performance profile m1.clang.python310.release.PyRosetta.MinSizeRel m1.clang.python311.release.PyRosetta.MinSizeRel m1.clang.python38.release.PyRosetta.MinSizeRel m1.clang.python39.release.PyRosetta.MinSizeRel mac.clang.python310.release.PyRosetta.MinSizeRel mac.clang.python311.release.PyRosetta.MinSizeRel mac.clang.python312.release.PyRosetta.MinSizeRel mac.clang.python313.release.PyRosetta.MinSizeRel mac.clang.python38.release.PyRosetta.MinSizeRel mac.clang.python39.release.PyRosetta.MinSizeRel ubuntu.clang.python310.release.PyRosetta.MinSizeRel ubuntu.clang.python311.release.PyRosetta.MinSizeRel ubuntu.clang.python312.release.PyRosetta.MinSizeRel ubuntu.clang.python38.release.PyRosetta.MinSizeRel ubuntu.clang.python39.release.PyRosetta.MinSizeRel m1.clang.python310.release.PyRosetta.Release m1.clang.python313.release.PyRosetta.Release m1.clang.python38.release.PyRosetta.Release m1.clang.python39.release.PyRosetta.Release mac.clang.python310.release.PyRosetta.Release mac.clang.python311.release.PyRosetta.Release mac.clang.python312.release.PyRosetta.Release mac.clang.python313.release.PyRosetta.Release mac.clang.python38.release.PyRosetta.Release mac.clang.python39.release.PyRosetta.Release ubuntu.clang.python310.release.PyRosetta.Release ubuntu.clang.python311.release.PyRosetta.Release ubuntu.clang.python312.release.PyRosetta.Release ubuntu.clang.python39.release.PyRosetta.Release release.PyRosetta.conda.Release scientific.FlexPepDock scientific.mp_f19_decoy_discrimination linux.clang.score linux.gcc.score mac.clang.score scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan linux.gcc.unit.release mac.clang.unit.release unit.ubsan gcc-10.gcc.cxx11thread.serialization.unit gcc-10.gcc.unit gcc-11.gcc.cxx11thread.serialization.unit gcc-12.gcc.unit gcc-13.gcc.unit gcc-9.gcc.cxx11thread.serialization.unit gcc-9.gcc.unit linux.clang.python310.unit linux.clang.python311.unit linux.clang.python312.unit linux.clang.python39.unit linux.gcc.python310.unit linux.gcc.python311.unit linux.gcc.python312.unit linux.gcc.python39.unit m1.clang.python312.unit m1.clang.python314.unit m1.clang.unit mac.clang.cxx11thread.serialization.unit mac.clang.python310.unit mac.clang.python311.unit mac.clang.python312.unit mac.clang.python313.unit mac.clang.python314.unit mac.clang.python39.unit ubuntu-20.04.clang.cxx11thread.serialization.unit ubuntu-20.04.clang.unit ubuntu-20.04.gcc.cxx11thread.serialization.unit ubuntu-20.04.gcc.python39.unit ubuntu-20.04.gcc.unit ubuntu-22.04.clang.cxx11thread.serialization.unit ubuntu-22.04.clang.unit ubuntu-22.04.gcc.cxx11thread.serialization.unit ubuntu-22.04.gcc.python39.unit ubuntu-22.04.gcc.unit ubuntu-24.04.clang.cxx11thread.serialization.unit ubuntu-24.04.clang.unit ubuntu-24.04.gcc.cxx11thread.serialization.unit ubuntu-24.04.gcc.unit ubuntu.clang.cxx11thread.serialization.unit ubuntu.clang.python310.unit ubuntu.clang.python311.unit ubuntu.clang.python312.unit ubuntu.clang.python313.unit ubuntu.clang.python314.unit ubuntu.clang.python39.unit ubuntu.clang.unit ubuntu.gcc.cxx11thread.serialization.unit ubuntu.gcc.python310.unit ubuntu.gcc.python311.unit ubuntu.gcc.python312.unit ubuntu.gcc.python313.unit ubuntu.gcc.python314.unit ubuntu.gcc.python39.unit ubuntu.gcc.unit util.apps windows.build.debug windows.build.release

Fix Slab geometry thickness/steepness argument order in MembraneInfo (#719) (#722) ## Summary Fixes #719. `Slab`'s constructor is `Slab(core::Real steepness, core::Real thickness)`, but two `MembraneInfo` constructors in `core/conformation/membrane/MembraneInfo.cc` called it with the arguments in the wrong order. **(1) Plain 6-arg constructor** passed `Slab(thickness, steepness)`, so the `Slab` geometry stored thickness and steepness swapped. The `fa_2012` energy methods (`FaMPEnv`/`FaMPSolv` → `mpframework_smooth_fa_2012`) read thickness/steepness off the geometry, so this silently changed scores (e.g. with `thickness=15.6, steepness=10`, the IMM1 transition midpoint became 10 Å instead of 15.6 Å with a far steeper transition). Now passes `Slab(steepness, thickness)`. **(2) Implicit-lipid constructor** passed `Slab(thickness, steepness)`, where the bare `thickness` token was *not* the member `thickness_` (just set from `implicit_lipids_->water_thickness()`) but the unscoped `MEM::thickness` enum (`== 1`) from `MembraneParams.hh` — both live in `core::conformation::membrane`. The call was therefore effectively `Slab(1, steepness)`: the lipid water thickness was dropped and `1` landed in the steepness slot. Now passes `Slab(steepness, thickness_)`, matching the sibling lipid + `MP_GEOMETRY_TRANSITION` constructor's `SLAB` case. This path is currently latent (these constructors set `implicit_lipids_`, so `use_franklin()` is true and the geometry thickness/steepness aren't read), but it was still wrong. All other `Slab` call sites in the file already use the correct `(steepness, thickness)` / `(steepness, thickness_)` order, so these two lines are the complete set of violations. Diagnosis and reproduction by @vuoanh in #719.

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Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
replica_docking revold_oas
Test: linux.clang.integration.tutorials

Failed sub-tests (click for more details):
input_and_output
Test: mac.clang.python39.integration

Failed sub-tests (click for more details):
mp_f19_relax
Test: ubuntu-20.04.clang.python36.scientific.FlexPepDock

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Test: ubuntu-20.04.clang.python36.scientific.mp_f19_decoy_discrimination

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