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Revisions №62201

branch: rosetta:main 「№62201」
Commited by: Jason C. Klima
GitHub commit link: 「80031f772eb0aac4」
Difference from previous tested commit:  code diff
Commit date: 2025-11-07 13:10:10
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta.notebook gcc-9.gcc.python37.PyRosetta.unit m1.clang.python310.PyRosetta.unit m1.clang.python311.PyRosetta.unit m1.clang.python312.PyRosetta.unit m1.clang.python313.PyRosetta.unit m1.clang.python314.PyRosetta.unit m1.clang.python38.PyRosetta.unit m1.clang.python39.PyRosetta.unit mac.clang.python38.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python310.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python311.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python312.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python313.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python314.PyRosetta.unit ubuntu-20.04.clang.cxx11thread.serialization.python39.PyRosetta.unit ubuntu-20.04.clang.python310.PyRosetta.unit ubuntu-20.04.clang.python311.PyRosetta.unit ubuntu-20.04.clang.python312.PyRosetta.unit ubuntu-20.04.clang.python313.PyRosetta.unit 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ubuntu.clang.python313.release.PyRosetta.MinSizeRel ubuntu.clang.python38.release.PyRosetta.MinSizeRel ubuntu.clang.python39.release.PyRosetta.MinSizeRel m1.clang.python310.release.PyRosetta.Release m1.clang.python311.release.PyRosetta.Release m1.clang.python312.release.PyRosetta.Release m1.clang.python313.release.PyRosetta.Release m1.clang.python38.release.PyRosetta.Release m1.clang.python39.release.PyRosetta.Release mac.clang.python310.release.PyRosetta.Release mac.clang.python311.release.PyRosetta.Release mac.clang.python312.release.PyRosetta.Release mac.clang.python313.release.PyRosetta.Release mac.clang.python38.release.PyRosetta.Release mac.clang.python39.release.PyRosetta.Release ubuntu.clang.python310.release.PyRosetta.Release ubuntu.clang.python311.release.PyRosetta.Release ubuntu.clang.python312.release.PyRosetta.Release ubuntu.clang.python313.release.PyRosetta.Release ubuntu.clang.python38.release.PyRosetta.Release ubuntu.clang.python39.release.PyRosetta.Release 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scientific.loop_modeling_ccd_12res.debug scientific.loop_modeling_ccd_12res scientific.loop_modeling_kic_12res.debug scientific.loop_modeling_kic_fragments_12res.debug scientific.loop_modeling_kic_fragments_12res scientific.loop_modeling_ngk_12res.debug scientific.loop_modeling_ngk_12res scientific.make_fragments scientific.mhc_epitope_energy.debug scientific.mhc_epitope_energy scientific.mp_dock.debug scientific.mp_dock scientific.mp_domain_assembly.debug scientific.mp_f19_decoy_discrimination scientific.mp_f19_sequence_recovery.debug scientific.mp_f19_sequence_recovery scientific.mp_lipid_acc.debug scientific.mp_lipid_acc scientific.mp_relax.debug scientific.mp_relax scientific.mp_symdock.debug scientific.mp_symdock scientific.peptide_pnear_vs_ic50 scientific.protein_data_bank_diagnostic.full scientific.relax_cartesian.debug scientific.relax_cartesian scientific.relax_fast.debug scientific.relax_fast_5iter.debug scientific.relax_fast_5iter scientific.relax_fast 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ubuntu.gcc.python310.unit ubuntu.gcc.python311.unit ubuntu.gcc.python312.unit ubuntu.gcc.python313.unit ubuntu.gcc.python314.unit ubuntu.gcc.python39.unit ubuntu.gcc.unit util.apps windows.build.debug windows.build.release

Updating pyrosetta.tests.distributed.cluster.test_reproducibility.TestEnvironmentReproducibility unit test (#562) This PR updates the following: - Prints log file contents from `PyRosettaCluster` in the original and reproduced simulation - Runs unbuffered python subprocesses for better runtime diagnostics in GitHub Actions - Enables live output streaming for better runtime diagnostics in GitHub Actions - Installs `pip` as a required dependency for the `pyrosetta-installer` package into the `uv` environment - Adds a warning to the `recreate_environment` docstring - Reduces unit test runtime

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Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
replica_docking
Test: linux.clang.integration.tutorials

Failed sub-tests (click for more details):
input_and_output
Test: linux.clang.maintenance.documentation

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Test: ubuntu-20.04.clang.python36.scientific.FlexPepDock

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Test: ubuntu-20.04.clang.python36.scientific.antibody_h3_modeling

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Test: ubuntu-20.04.clang.python36.scientific.mp_f19_sequence_recovery

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Test: ubuntu-20.04.clang.python36.scientific.mp_lipid_acc

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Test: ubuntu-20.04.clang.python36.scientific.protein_data_bank_diagnostic.full

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