Merge pull request #1217 from RosettaCommons/aleaverfay/fix_cloud_pdb_output_in_matcher_postXRW
Aleaverfay/fix cloud pdb output in matcher post xrw
Fixing a bug from the ChemXRW that broke cloud PDB writing.
This patch activats the "skip_connect_info" in the StructFileRepOptions
object in the CloudPDBWriter's call to dump_pdb_residue helping to
avoid assertion failures stemming from non-polymeric inter-residue
connections being seen as asymmetric (residue i's connection to residue
j isn't mirrored in residue j -- because residue j isn't being output).
It's not clear that dump_pdb_residue can function properly without
the skip_connect_info flag. This should be looked at more closely.