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Revisions №53

branch: release 「№53」
Commited by: Vikram K. Mulligan
GitHub commit link: 「0b0f97857f0d4765」 「№471」
Difference from previous tested commit:  code diff
Commit date: 2015-04-21 13:35:21

Merge pull request #471 from RosettaCommons/vmullig/z_is_for_zibo_that_good_enough_for_me Adjusting z1_offset parameter in helical bundle code to match Grigoryan paper's convention. This adds a correction factor so that z1_offset is measured as the offset along the global z-axis, in Angstroms, rather than as the offset along the local helix axis. This is intended to match Grigoryan and DeGrado (2011) J. Mol. Biol. 405(4):1079-1100. Tasks: -- Add correction factor. -- Double-check that this does, indeed, produce the correct offsets. -- Update documentation. -- Also, switch convention for inverted helices. (They now move in the opposite direction to right-side-up helices). Expect integration test changes to z0_offset and z1_offset integration tests for the BundleGridSampler and PerturbBundle movers.