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Revisions №61867

branch: master 「№61867」
Commited by: Vikram K. Mulligan
GitHub commit link: 「a5461a21d0122c17」 「№5960」
Difference from previous tested commit:  code diff
Commit date: 2022-04-18 14:32:53
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit m1.clang.python38.PyRosetta4.unit m1.clang.python39.PyRosetta4.unit mac.clang.python36.PyRosetta4.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.bcl.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug linux.gcc.bcl.build.debug mpi mpi.serialization linux.icc.build.debug mac.clang.bcl.build.debug OpenCL mac.clang.python36.build.debug ubuntu.clang.bcl.build.debug ubuntu.gcc.bcl.build.debug build.header build.levels build.ninja_debug graphics static beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile release.PyRosetta.Debug release.PyRosetta.Release release.source scientific.loop_modeling_kic_fragments_12res.debug scientific.loop_modeling_kic_fragments_12res scientific.mp_domain_assembly.debug scientific.mp_domain_assembly scientific.mp_relax.debug scientific.simple_cycpep_predict linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit m1.clang.python39.unit util.apps windows.build.debug windows.build.release

Merge pull request #5960 from RosettaCommons/revert-5920-JackMaguire/PackerSkipTemp4 Revert "Skip final temperature raise in the default packer" temporarily, until unit test failure can be fixed.

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Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
AlignPDBInfoToSequences AlterSpecDisruption AnchoredDesign DumpTrajectoryEnergy_packing Enzrevert_xml FloppyTail InterfaceAnalyzer InterfaceAnalyzer_bothpack InterfaceAnalyzer_prepack InterfaceAnalyzer_resfile KIC_refine KIC_vicinity KIC_with_fragments LayerDesign_symm LayerSelector LoopAnalyzer PeptideCyclizeMover PolarDesign2019 ReadResfile_with_selector SnugDock TryDisulfPermutations UBQ_E2_thioester UBQ_E2_thioester_extra_bodies UBQ_E2_thioester_two_ubiquitins UBQ_Gp_CYD-CYD UBQ_Gp_LYX-Cterm add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup antibody_H3 antibody_H3_camelid antibody_designer antibody_designer_camelid antibody_designer_xml antibody_graft assemble_domains_jd2 autoNOE_rosetta autosetup_metals_centroid backrub backrub_pilot batch_relax beta_strand_homodimer bin_initialization bin_perturbation broker_membrane bundlegridsampler_composition_energy bundlegridsampler_composition_energy_fract_range bundlegridsampler_design bundlegridsampler_design_nstruct_mode buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm cart_min_glycans cartesianddg classic_relax_1a19 cleanAlignment cluster_alns composition_energy_layers create_sequence_motif crosslinkermover_1_4_bbmb_asymm crosslinkermover_1_4_bbmb_c2_symmetry crosslinkermover_1_4_bbmb_s2_symm crosslinkermover_octahedral crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal crosslinkermover_tetrahedral_metal_asp crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tetrahedral_metal_d2_symmetry crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar crosslinkermover_trigonal_planar_c3_symm crosslinkermover_trigonal_pyramidal crosslinkermover_trigonal_pyramidal_c3_symm cyclization cycpep_design_pipeline cycpep_rdkit_metric cycpep_rigid_body_permutation_mover d_workflow ddG_of_mutation ddG_sym density_refine design_w_custom_palette-NCAAs dgdp_aio dgdp_script disulfidize_beta_cys dna_interface_design dock_glycans dock_with_hotspot_place_simultaneously docking_distance_constraints docking_ensemble docking_ensemble_prepack docking_full_protocol docking_local_refine docking_prepack docking_site_constraints doug_dock_design_min_mod2_cal_cal enzdes evolution farnesyl fast_relax fixbb flexpepdock flexpepdock_abinitio fold_from_loops fuzzy ga_ligand_dock ga_ligand_dock_macrocycle gen_apo_grids gen_lig_grids genkic_lowmemory_mode genkic_ramaprepro_sampling glycan_relax glycan_tree_relax glycomutagenesis glycopeptidedocking glycopeptidedocking_diglyco_long hbnet_energy hbnet_energy_rosettascripts_linear hbnet_energy_symm hbs_design helical_bundle_predict helical_bundle_predict_psipred helical_bundle_predict_psipred_with_helix_globals helical_bundle_predict_sequence helical_bundle_predict_skipping_residues helix_from_sequence homodimer_fnd_ref2015_memb hotspot_hashing hotspot_stub_constraints hybridization hydrate hydrate_relax interaction_graph_summary_metric inv_kin_lig_loop_design iphold jd2test_PDBIO jd2test_PDBin_mmCIFout jd2test_PDBin_mmCIFout_extra_data_separate jd2test_mmCIFIO jd2test_mmCIFin_PDBout job_definition_script_vars jrelax kinematic_looprelax ligand_database_io ligand_dock_7cpa ligand_dock_ensemble ligand_dock_script ligand_water_docking loop_modeling metal_setup metalloprotein_abrelax mhc_epitope mirror_symm mmtfIO_score_test motif_dna_packer_design mp_dock mp_domain_assembly mp_domain_assembly_FtsQ mp_find_interface mp_relax mp_symdock mr_protocols multistage_rosetta_scripts ncaa_fixbb ncbb_packer_palette netcharge_design netcharge_design_symm next_generation_KIC oligourea_design oligourea_predict oop_design oop_dock_design place_simultaneously pna pocket_relax posttranslationalmod_io ppi_v3_suiteB ppi_v3_suiteC ppi_v3_suiteE ppi_v3_suiteF range_relax_w_cst readin_dna_rna_protein recon_design relax_w_allatom_cst remodel_disulfides_rosettascripts remodel_helical_repeat repeat_relax rna_denovo_dna_bridge rna_design rnp_ddg_calc_wt rnp_ddg_relax_command_2 rosetta_scripts_jd3 rosetta_scripts_loops rosie_ligand_docking rotamer_probability rs_flexbbmoves score12_docking sdf_reader seed_ensemble_JD2_JI sequence_profile_constraints sequence_tolerance simple_cycpep_predict simple_cycpep_predict_1_4_bbmb simple_cycpep_predict_angle simple_cycpep_predict_anglelength simple_cycpep_predict_bondangle_bondlength simple_cycpep_predict_cartesian simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_design simple_cycpep_predict_nmethyl simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_peptoid simple_cycpep_predict_setting simple_cycpep_predict_sidechain_isopeptide simple_cycpep_predict_sidechain_isopeptide_reverse simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_symmetric_sampling simple_cycpep_predict_tbmb simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_cycpep_predict_terminal_disulfide_tails_2 simple_cycpep_predict_tetrahedral_metal simple_cycpep_predict_tetrahedral_metal_asp simple_cycpep_predict_thioether_lariat simple_cycpep_predict_tma simple_cycpep_predict_trigonal_planar_metal simple_cycpep_predict_trigonal_pyramidal_metal simple_glycosylation splice_in_4loops_longer splice_in_4loops_shorter splice_out_H3_longer splice_out_L3_longer struc_set_fragment_picker supercharge surface_docking swa_protein_loop_sampler swa_protein_prepack swm_dna_bridge symm_disulfidize symm_rotamer_boltzmann task_selector tcrmodel test1_benchmark threefold_symm_peptide_design threefoldlinkermover_tbmb threefoldlinkermover_tbmb_symmetric torsion_restricted_sampling vip voids_penalty_energy_design voids_penalty_energy_design_symmetry zinc_heterodimer
Test: mac.clang.python39.integration

Failed sub-tests (click for more details):
AlignPDBInfoToSequences AlterSpecDisruption AnchoredDesign DumpTrajectoryEnergy_packing FloppyTail InterfaceAnalyzer InterfaceAnalyzer_bothpack InterfaceAnalyzer_prepack InterfaceAnalyzer_resfile KIC_refine KIC_vicinity KIC_with_fragments LayerDesign_symm LayerSelector LoopAnalyzer PeptideCyclizeMover PolarDesign2019 ReadResfile_with_selector SnugDock TryDisulfPermutations UBQ_E2_thioester UBQ_E2_thioester_extra_bodies UBQ_E2_thioester_two_ubiquitins UBQ_Gp_CYD-CYD UBQ_Gp_LYX-Cterm add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup antibody_H3 antibody_H3_camelid antibody_designer antibody_designer_camelid antibody_designer_xml antibody_graft assemble_domains_jd2 autoNOE_rosetta backrub backrub_pilot batch_relax beta_strand_homodimer bin_initialization bin_perturbation broker_membrane bundlegridsampler_composition_energy bundlegridsampler_composition_energy_fract_range bundlegridsampler_design bundlegridsampler_design_nstruct_mode buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm cart_min_glycans classic_relax_1a19 cleanAlignment cluster_alns composition_energy_layers crosslinkermover_square_planar crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal_asp crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tma crosslinkermover_trigonal_planar crosslinkermover_trigonal_pyramidal cyclization cycpep_design_pipeline cycpep_rdkit_metric cycpep_rigid_body_permutation_mover d_workflow ddG_of_mutation ddG_sym density_refine design_w_custom_palette-NCAAs dgdp_aio dgdp_script disulfidize_beta_cys dna_interface_design dock_glycans docking_distance_constraints docking_ensemble docking_ensemble_prepack docking_full_protocol docking_local_refine docking_prepack docking_site_constraints doug_dock_design_min_mod2_cal_cal enzdes evolution farnesyl fast_relax fixbb flexpepdock flexpepdock_abinitio fold_from_loops fuzzy ga_ligand_dock_macrocycle gen_apo_grids genkic_lowmemory_mode genkic_ramaprepro_sampling glycan_relax glycan_tree_relax glycomutagenesis glycopeptidedocking glycopeptidedocking_diglyco_long hbnet_energy hbnet_energy_rosettascripts_linear hbnet_energy_symm hbs_design helical_bundle_predict helical_bundle_predict_psipred helical_bundle_predict_psipred_with_helix_globals helical_bundle_predict_sequence helical_bundle_predict_skipping_residues helix_from_sequence homodimer_fnd_ref2015_memb hotspot_hashing hotspot_stub_constraints hybridization hydrate hydrate_relax interaction_graph_summary_metric inv_kin_lig_loop_design inverse_rotamer_remodel iphold jd2test_PDBIO jd2test_PDBin_mmCIFout jd2test_PDBin_mmCIFout_extra_data_separate jd2test_mmCIFIO jd2test_mmCIFin_PDBout job_definition_script_vars jrelax kinematic_looprelax ligand_database_io ligand_dock_7cpa ligand_dock_ensemble ligand_dock_script ligand_water_docking loop_modeling membrane_relax membrane_relax_hbond metal_setup metalloprotein_abrelax mhc_epitope mirror_symm mmtfIO_score_test mp_dock mp_domain_assembly mp_domain_assembly_FtsQ mp_find_interface mp_relax mp_relax_w_ligand mp_symdock mr_protocols multistage_rosetta_scripts ncbb_packer_palette netcharge_design netcharge_design_symm next_generation_KIC oligourea_design oligourea_predict oop_design oop_dock_design pepspec place_simultaneously pocket_relax ppi_v3_suiteC ppi_v3_suiteE ppi_v3_suiteF readin_dna_rna_protein recon_design relax_w_allatom_cst remodel remodel_disulfides remodel_disulfides_rosettascripts remodel_helical_repeat repeat_relax rna_denovo_dna_bridge rna_design rnp_ddg_calc_wt rnp_ddg_relax_command_2 rosetta_scripts_jd3 rosetta_scripts_loops rosie_ligand_docking rotamer_probability rs_flexbbmoves score12_docking sdf_reader seed_ensemble_JD2_JI sequence_profile_constraints sequence_tolerance simple_cycpep_predict simple_cycpep_predict_1_4_bbmb simple_cycpep_predict_angle simple_cycpep_predict_anglelength simple_cycpep_predict_bondangle_bondlength simple_cycpep_predict_cartesian simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_design simple_cycpep_predict_nmethyl simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_peptoid simple_cycpep_predict_setting simple_cycpep_predict_sidechain_isopeptide simple_cycpep_predict_sidechain_isopeptide_reverse simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_symmetric_sampling simple_cycpep_predict_tbmb simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_cycpep_predict_terminal_disulfide_tails_2 simple_cycpep_predict_tetrahedral_metal simple_cycpep_predict_tetrahedral_metal_asp simple_cycpep_predict_tma simple_cycpep_predict_trigonal_planar_metal simple_cycpep_predict_trigonal_pyramidal_metal simple_glycosylation splice_in_4loops_longer splice_in_4loops_shorter splice_out_H3_longer splice_out_L3_longer struc_set_fragment_picker supercharge surface_docking swa_protein_loop_sampler swa_protein_prepack swm_dna_bridge symm_rotamer_boltzmann task_selector tcrmodel test1_benchmark threefold_symm_peptide_design torsion_restricted_sampling vip voids_penalty_energy_design voids_penalty_energy_design_symmetry zinc_heterodimer
Test: linux.clang.profile

Failed sub-tests (click for more details):
AnchoredDesign
Test: gcc-11.gcc.python39.unit

Failed sub-tests (click for more details):
core:CyclicGeometryTwoChainTests:test_cyclic_permutation_cart_bonded core:CyclicGeometryTwoChainTests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometryTwoChainTests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_atr core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_dun core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_elec core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_rep core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_sol core:CyclicGeometryTwoChainTests:test_cyclic_permutation_hbonds core:CyclicGeometryTwoChainTests:test_cyclic_permutation_omega core:CyclicGeometryTwoChainTests:test_cyclic_permutation_p_aa_pp core:CyclicGeometryTwoChainTests:test_cyclic_permutation_pro_close core:CyclicGeometryTwoChainTests:test_cyclic_permutation_rama core:CyclicGeometryTwoChainTests:test_cyclic_permutation_rama_prepro core:CyclicGeometryTwoChainTests:test_cyclic_permutation_talaris2014 core:CyclicGeometryTwoChainTests:test_cyclic_permutation_yhh_planarity core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_cart_bonded core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_atr core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_dun core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_elec core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_rep core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_sol core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_hbonds core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_omega core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_p_aa_pp core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_pro_close core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_rama core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_rama_prepro core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_talaris2014 core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_yhh_planarity core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_beta_nov15 core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_atr core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_dun core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_elec core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_rep core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_sol core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_hbonds core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_lk_ball_wtd core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_omega core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_pro_close core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_rama core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_yhh_planarity core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_dun_dev core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_dun_semi core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_atr_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_rep_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_rep core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_lk_ball_bridge core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_lk_ball_bridge_uncpl core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_pro_close core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_rama_prepro core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_beta core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_cart_bonded core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_atr core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_dun_rot core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_elec core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_intra_elec core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_sol core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_hbonds core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_hxl_tors core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_lk_ball core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_lk_ball_iso core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_omega core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_rama core:PDB_w_glycans_IO:test_glycan_fragment core:PDB_w_glycans_IO:test_pdb_io core:SapConstraintEnergyTests:test_fast_partial_packing core:SapConstraintEnergyTests:test_helper_lightning core:SapConstraintEnergyTests:test_lightning_packing_partial core:SapConstraintEnergyTests:test_math_mover core:SapConstraintEnergyTests:test_mover core:SapConstraintEnergyTests:test_partial_packing core:SapConstraintEnergyTests:test_selectors core:TestAutoDetectGlycanConnections:test_auto_detect_mmtf_readwrite core:TestAutoDetectGlycanConnections:test_auto_detect_pdb_read protocols:AddMembraneMoverTest:test_anchored_foldtree protocols:AddMembraneMoverTest:test_conformation_invariant protocols:AddMembraneMoverTest:test_default_membrane_position protocols:AddMembraneMoverTest:test_existing_membrane_rsd protocols:AddMembraneMoverTest:test_initial_foldtree protocols:AddMembraneMoverTest:test_initial_spans_setup protocols:AddMembraneMoverTest:test_membrane_jump_tracking protocols:AddMembraneMoverTest:test_membrane_rsd_tracking protocols:AddMembraneMoverTest:test_multi_mem_pose1 protocols:AddMembraneMoverTest:test_multi_mem_pose2 protocols:AddMembraneMoverTest:test_single_tm_span_pose protocols:AlignPDBInfoToSequencesTests:test_SequenceSpecification protocols:AlignPDBInfoToSequencesTests:test_ctor_and_operators protocols:AlignPDBInfoToSequencesTests:test_dna_align protocols:AlignPDBInfoToSequencesTests:test_mode_enum protocols:AlignPDBInfoToSequencesTests:test_multiple protocols:AlignPDBInfoToSequencesTests:test_parse_target_tag protocols:AlignPDBInfoToSequencesTests:test_real_example protocols:AlignPDBInfoToSequencesTests:test_set_modes protocols:AlignPDBInfoToSequencesTests:test_single protocols:AlignPDBInfoToSequencesTests:test_throw_on_fail protocols:MRSJobQueenTests:test_MRSJobQueen_with_good_input protocols:MRSJobQueenTests:test_incorrect_attribute_value protocols:MRSJobQueenTests:test_not_enough_job_results_for_next_node protocols:MRSJobQueenTests:test_tag_for_nonmover_nonfilter protocols:MRSJobQueenTests:test_typo_in_score_function protocols:MembraneUtil:test_angle_rmsd_method protocols:MembraneUtil:test_average_antiparallel_embeddings protocols:MembraneUtil:test_average_embeddings protocols:MembraneUtil:test_calc_helix_angles protocols:MembraneUtil:test_calc_helix_axis protocols:MembraneUtil:test_chain_com protocols:MembraneUtil:test_check_vector protocols:MembraneUtil:test_compute_embeddings_by_chain protocols:MembraneUtil:test_compute_structure_based_embedding1 protocols:MembraneUtil:test_compute_structure_based_embedding2 protocols:MembraneUtil:test_compute_structure_based_embedding3 protocols:MembraneUtil:test_compute_structure_based_embedding4 protocols:MembraneUtil:test_compute_structure_based_embedding5 protocols:MembraneUtil:test_compute_structure_based_embedding6 protocols:MembraneUtil:test_compute_structure_based_embedding7 protocols:MembraneUtil:test_compute_structure_based_embedding8 protocols:MembraneUtil:test_create_membrane_docking_foldtree_from_partners protocols:MembraneUtil:test_create_membrane_foldtree_anchor_com protocols:MembraneUtil:test_create_membrane_foldtree_anchor_pose_tmcom protocols:MembraneUtil:test_create_membrane_foldtree_anchor_tmcom protocols:MembraneUtil:test_create_membrane_multi_partner_foldtree_anchor_tmcom protocols:MembraneUtil:test_create_specific_membrane_foldtree protocols:MembraneUtil:test_is_fixed_on_fixed_memb protocols:MembraneUtil:test_is_fixed_on_moveable_memb protocols:MembraneUtil:test_is_independently_moveable_on_fixed_memb protocols:MembraneUtil:test_is_independently_moveable_on_independently_moveable_memb protocols:MembraneUtil:test_membrane_bb_rmsd_no_super protocols:MembraneUtil:test_membrane_bb_rmsd_no_super_allatom protocols:MembraneUtil:test_membrane_bb_rmsd_with_super protocols:MembraneUtil:test_membrane_bb_rmsd_with_super_allatom protocols:MembraneUtil:test_pose_tm_COM protocols:MembraneUtil:test_rsd_closest_chain_com protocols:MembraneUtil:test_rsd_closest_chain_tm_com protocols:MembraneUtil:test_rsd_closest_pose_tm_COM protocols:MembraneUtil:test_split_topology_by_chain_noshift protocols:MembraneUtil:test_split_topology_by_jump protocols:MembraneUtil:test_split_topology_by_jump_noshift protocols:MembraneUtil:test_tm_com protocols:MoverFactoryTests:test_MoverFactory_all_Mover_all_attributes_have_descriptions protocols:MoverFactoryTests:test_MoverFactory_all_Mover_complexTypes_have_descriptions protocols:MoverFactoryTests:test_all_movers_define_valid_xsds