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Revisions №61866

branch: master 「№61866」
Commited by: Jack Maguire
GitHub commit link: 「fd4e9dcf7eb660a9」 「№5920」
Difference from previous tested commit:  code diff
Commit date: 2022-04-14 21:21:58
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit m1.clang.python38.PyRosetta4.unit m1.clang.python39.PyRosetta4.unit mac.clang.python36.PyRosetta4.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.bcl.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug linux.gcc.bcl.build.debug mpi mpi.serialization linux.icc.build.debug mac.clang.bcl.build.debug OpenCL mac.clang.python36.build.debug ubuntu.clang.bcl.build.debug ubuntu.gcc.bcl.build.debug build.header build.levels build.ninja_debug graphics static mac.clang.static.build.release beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.addsan integration.mpi integration.release_debug integration.tensorflow integration.thread integration.tutorials integration.ubsan integration.valgrind integration maintenance.documentation performance profile linux.clang.python36.release.PyRosetta.Debug linux.clang.python37.release.PyRosetta.Debug linux.clang.python38.release.PyRosetta.Debug linux.clang.python39.release.PyRosetta.Debug mac.clang.python36.release.PyRosetta.Debug mac.clang.python37.release.PyRosetta.Debug mac.clang.python38.release.PyRosetta.Debug mac.clang.python39.release.PyRosetta.Debug linux.clang.python36.release.PyRosetta.MinSizeRel linux.clang.python37.release.PyRosetta.MinSizeRel linux.clang.python38.release.PyRosetta.MinSizeRel linux.clang.python39.release.PyRosetta.MinSizeRel m1.clang.python38.release.PyRosetta.MinSizeRel m1.clang.python39.release.PyRosetta.MinSizeRel mac.clang.python36.release.PyRosetta.MinSizeRel mac.clang.python37.release.PyRosetta.MinSizeRel mac.clang.python38.release.PyRosetta.MinSizeRel mac.clang.python39.release.PyRosetta.MinSizeRel ubuntu.clang.python36.release.PyRosetta.MinSizeRel ubuntu.clang.python37.release.PyRosetta.MinSizeRel ubuntu.clang.python38.release.PyRosetta.MinSizeRel ubuntu.clang.python39.release.PyRosetta.MinSizeRel linux.clang.python36.release.PyRosetta.Release linux.clang.python37.release.PyRosetta.Release linux.clang.python38.release.PyRosetta.Release linux.clang.python39.release.PyRosetta.Release m1.clang.python38.release.PyRosetta.Release m1.clang.python39.release.PyRosetta.Release mac.clang.python36.release.PyRosetta.Release mac.clang.python37.release.PyRosetta.Release mac.clang.python38.release.PyRosetta.Release mac.clang.python39.release.PyRosetta.Release ubuntu.clang.python36.release.PyRosetta.Release ubuntu.clang.python37.release.PyRosetta.Release ubuntu.clang.python38.release.PyRosetta.Release ubuntu.clang.python39.release.PyRosetta.Release release.PyRosetta.conda.Release release.source scientific.docking_ensemble scientific.loop_modeling_kic_fragments_12res.debug scientific.loop_modeling_kic_fragments_12res scientific.mp_relax scientific.sb_franklin2019_mpddg scientific.sb_score12_docking linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release unit.ubsan unit.valgrind gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit m1.clang.python39.unit util.apps windows.build.debug windows.build.release

Merge pull request #5920 from RosettaCommons/JackMaguire/PackerSkipTemp4 Skip final temperature raise in the default packer

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Test: ubuntu.gcc.integration.addsan

Failed sub-tests (click for more details):
simple_cycpep_predict_square_pyramidal_metal
Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
AlignPDBInfoToSequences AlterSpecDisruption AnchoredDesign DumpTrajectoryEnergy_packing Enzrevert_xml FloppyTail InterfaceAnalyzer InterfaceAnalyzer_bothpack InterfaceAnalyzer_prepack InterfaceAnalyzer_resfile KIC_refine KIC_vicinity KIC_with_fragments LayerDesign_symm LayerSelector LoopAnalyzer PeptideCyclizeMover PolarDesign2019 ReadResfile_with_selector SnugDock TryDisulfPermutations UBQ_E2_thioester UBQ_E2_thioester_extra_bodies UBQ_E2_thioester_two_ubiquitins UBQ_Gp_CYD-CYD UBQ_Gp_LYX-Cterm add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup antibody_H3 antibody_H3_camelid antibody_designer antibody_designer_camelid antibody_designer_xml antibody_graft assemble_domains_jd2 autoNOE_rosetta autosetup_metals_centroid backrub backrub_pilot batch_relax beta_strand_homodimer bin_initialization bin_perturbation broker_membrane bundlegridsampler_composition_energy bundlegridsampler_composition_energy_fract_range bundlegridsampler_design bundlegridsampler_design_nstruct_mode buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm cart_min_glycans cartesianddg classic_relax_1a19 cleanAlignment cluster_alns composition_energy_layers create_sequence_motif crosslinkermover_1_4_bbmb_asymm crosslinkermover_1_4_bbmb_c2_symmetry crosslinkermover_1_4_bbmb_s2_symm crosslinkermover_octahedral crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal crosslinkermover_tetrahedral_metal_asp crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tetrahedral_metal_d2_symmetry crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar crosslinkermover_trigonal_planar_c3_symm crosslinkermover_trigonal_pyramidal crosslinkermover_trigonal_pyramidal_c3_symm cyclization cycpep_design_pipeline cycpep_rdkit_metric cycpep_rigid_body_permutation_mover d_workflow ddG_of_mutation ddG_sym density_refine design_w_custom_palette-NCAAs dgdp_aio dgdp_script disulfidize_beta_cys dna_interface_design dock_glycans dock_with_hotspot_place_simultaneously docking_distance_constraints docking_ensemble docking_ensemble_prepack docking_full_protocol docking_local_refine docking_prepack docking_site_constraints doug_dock_design_min_mod2_cal_cal enzdes evolution farnesyl fast_relax fixbb flexpepdock flexpepdock_abinitio fold_from_loops fuzzy ga_ligand_dock ga_ligand_dock_macrocycle gen_apo_grids gen_lig_grids genkic_lowmemory_mode genkic_ramaprepro_sampling glycan_relax glycan_tree_relax glycomutagenesis glycopeptidedocking glycopeptidedocking_diglyco_long hbnet_energy hbnet_energy_rosettascripts_linear hbnet_energy_symm hbs_design helical_bundle_predict helical_bundle_predict_psipred helical_bundle_predict_psipred_with_helix_globals helical_bundle_predict_sequence helical_bundle_predict_skipping_residues helix_from_sequence homodimer_fnd_ref2015_memb hotspot_hashing hotspot_stub_constraints hybridization hydrate hydrate_relax interaction_graph_summary_metric inv_kin_lig_loop_design iphold jd2test_PDBIO jd2test_PDBin_mmCIFout jd2test_PDBin_mmCIFout_extra_data_separate jd2test_mmCIFIO jd2test_mmCIFin_PDBout job_definition_script_vars jrelax kinematic_looprelax ligand_database_io ligand_dock_7cpa ligand_dock_ensemble ligand_dock_script ligand_water_docking loop_modeling metal_setup metalloprotein_abrelax mhc_epitope mirror_symm mmtfIO_score_test motif_dna_packer_design mp_dock mp_domain_assembly mp_domain_assembly_FtsQ mp_find_interface mp_relax mp_symdock mr_protocols multistage_rosetta_scripts ncaa_fixbb ncbb_packer_palette netcharge_design netcharge_design_symm next_generation_KIC oligourea_design oligourea_predict oop_design oop_dock_design place_simultaneously pna pocket_relax posttranslationalmod_io ppi_v3_suiteB ppi_v3_suiteC ppi_v3_suiteE ppi_v3_suiteF range_relax_w_cst readin_dna_rna_protein recon_design relax_w_allatom_cst remodel_disulfides_rosettascripts remodel_helical_repeat repeat_relax rna_denovo_dna_bridge rna_design rnp_ddg_calc_wt rnp_ddg_relax_command_2 rosetta_scripts_jd3 rosetta_scripts_loops rosie_ligand_docking rotamer_probability rs_flexbbmoves score12_docking sdf_reader seed_ensemble_JD2_JI sequence_profile_constraints sequence_tolerance simple_cycpep_predict simple_cycpep_predict_1_4_bbmb simple_cycpep_predict_angle simple_cycpep_predict_anglelength simple_cycpep_predict_bondangle_bondlength simple_cycpep_predict_cartesian simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_design simple_cycpep_predict_nmethyl simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_peptoid simple_cycpep_predict_setting simple_cycpep_predict_sidechain_isopeptide simple_cycpep_predict_sidechain_isopeptide_reverse simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_symmetric_sampling simple_cycpep_predict_tbmb simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_cycpep_predict_terminal_disulfide_tails_2 simple_cycpep_predict_tetrahedral_metal simple_cycpep_predict_tetrahedral_metal_asp simple_cycpep_predict_thioether_lariat simple_cycpep_predict_tma simple_cycpep_predict_trigonal_planar_metal simple_cycpep_predict_trigonal_pyramidal_metal simple_glycosylation splice_in_4loops_longer splice_in_4loops_shorter splice_out_H3_longer splice_out_L3_longer struc_set_fragment_picker supercharge surface_docking swa_protein_loop_sampler swa_protein_prepack swm_dna_bridge symm_disulfidize symm_rotamer_boltzmann task_selector tcrmodel test1_benchmark threefold_symm_peptide_design threefoldlinkermover_tbmb threefoldlinkermover_tbmb_symmetric torsion_restricted_sampling vip voids_penalty_energy_design voids_penalty_energy_design_symmetry zinc_heterodimer
Test: linux.clang.integration.tutorials

Failed sub-tests (click for more details):
Protein-Protein-Docking
Test: ubuntu.gcc.integration.ubsan

Failed sub-tests (click for more details):
simple_cycpep_predict_square_pyramidal_metal
Test: mac.clang.python39.integration

Failed sub-tests (click for more details):
AlignPDBInfoToSequences AlterSpecDisruption AnchoredDesign DumpTrajectoryEnergy_packing FloppyTail InterfaceAnalyzer InterfaceAnalyzer_bothpack InterfaceAnalyzer_prepack InterfaceAnalyzer_resfile KIC_refine KIC_vicinity KIC_with_fragments LayerDesign_symm LayerSelector LoopAnalyzer PeptideCyclizeMover PolarDesign2019 ReadResfile_with_selector SnugDock TryDisulfPermutations UBQ_E2_thioester UBQ_E2_thioester_extra_bodies UBQ_E2_thioester_two_ubiquitins UBQ_Gp_CYD-CYD UBQ_Gp_LYX-Cterm add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup antibody_H3 antibody_H3_camelid antibody_designer antibody_designer_camelid antibody_designer_xml antibody_graft assemble_domains_jd2 autoNOE_rosetta backrub backrub_pilot batch_relax beta_strand_homodimer bin_initialization bin_perturbation broker_membrane bundlegridsampler_composition_energy bundlegridsampler_composition_energy_fract_range bundlegridsampler_design bundlegridsampler_design_nstruct_mode buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm cart_min_glycans classic_relax_1a19 cleanAlignment cluster_alns composition_energy_layers crosslinkermover_square_planar crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal_asp crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tma crosslinkermover_trigonal_planar crosslinkermover_trigonal_pyramidal cyclization cycpep_design_pipeline cycpep_rdkit_metric cycpep_rigid_body_permutation_mover d_workflow ddG_of_mutation ddG_sym density_refine design_w_custom_palette-NCAAs dgdp_aio dgdp_script disulfidize_beta_cys dna_interface_design dock_glycans docking_distance_constraints docking_ensemble docking_ensemble_prepack docking_full_protocol docking_local_refine docking_prepack docking_site_constraints doug_dock_design_min_mod2_cal_cal enzdes evolution farnesyl fast_relax fixbb flexpepdock flexpepdock_abinitio fold_from_loops fuzzy ga_ligand_dock_macrocycle gen_apo_grids genkic_lowmemory_mode genkic_ramaprepro_sampling glycan_relax glycan_tree_relax glycomutagenesis glycopeptidedocking glycopeptidedocking_diglyco_long hbnet_energy hbnet_energy_rosettascripts_linear hbnet_energy_symm hbs_design helical_bundle_predict helical_bundle_predict_psipred helical_bundle_predict_psipred_with_helix_globals helical_bundle_predict_sequence helical_bundle_predict_skipping_residues helix_from_sequence homodimer_fnd_ref2015_memb hotspot_hashing hotspot_stub_constraints hybridization hydrate hydrate_relax interaction_graph_summary_metric inv_kin_lig_loop_design inverse_rotamer_remodel iphold jd2test_PDBIO jd2test_PDBin_mmCIFout jd2test_PDBin_mmCIFout_extra_data_separate jd2test_mmCIFIO jd2test_mmCIFin_PDBout job_definition_script_vars jrelax kinematic_looprelax ligand_database_io ligand_dock_7cpa ligand_dock_ensemble ligand_dock_script ligand_water_docking loop_modeling membrane_relax membrane_relax_hbond metal_setup metalloprotein_abrelax mhc_epitope mirror_symm mmtfIO_score_test mp_dock mp_domain_assembly mp_domain_assembly_FtsQ mp_find_interface mp_relax mp_relax_w_ligand mp_symdock mr_protocols multistage_rosetta_scripts ncbb_packer_palette netcharge_design netcharge_design_symm next_generation_KIC oligourea_design oligourea_predict oop_design oop_dock_design pepspec place_simultaneously pocket_relax ppi_v3_suiteC ppi_v3_suiteE ppi_v3_suiteF readin_dna_rna_protein recon_design relax_w_allatom_cst remodel remodel_disulfides remodel_disulfides_rosettascripts remodel_helical_repeat repeat_relax rna_denovo_dna_bridge rna_design rnp_ddg_calc_wt rnp_ddg_relax_command_2 rosetta_scripts_jd3 rosetta_scripts_loops rosie_ligand_docking rotamer_probability rs_flexbbmoves score12_docking sdf_reader seed_ensemble_JD2_JI sequence_profile_constraints sequence_tolerance simple_cycpep_predict simple_cycpep_predict_1_4_bbmb simple_cycpep_predict_angle simple_cycpep_predict_anglelength simple_cycpep_predict_bondangle_bondlength simple_cycpep_predict_cartesian simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_design simple_cycpep_predict_nmethyl simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_peptoid simple_cycpep_predict_setting simple_cycpep_predict_sidechain_isopeptide simple_cycpep_predict_sidechain_isopeptide_reverse simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_symmetric_sampling simple_cycpep_predict_tbmb simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_cycpep_predict_terminal_disulfide_tails_2 simple_cycpep_predict_tetrahedral_metal simple_cycpep_predict_tetrahedral_metal_asp simple_cycpep_predict_tma simple_cycpep_predict_trigonal_planar_metal simple_cycpep_predict_trigonal_pyramidal_metal simple_glycosylation splice_in_4loops_longer splice_in_4loops_shorter splice_out_H3_longer splice_out_L3_longer struc_set_fragment_picker supercharge surface_docking swa_protein_loop_sampler swa_protein_prepack swm_dna_bridge symm_rotamer_boltzmann task_selector tcrmodel test1_benchmark threefold_symm_peptide_design torsion_restricted_sampling vip voids_penalty_energy_design voids_penalty_energy_design_symmetry zinc_heterodimer
Test: linux.clang.profile

Failed sub-tests (click for more details):
AnchoredDesign
Test: linux.clang.scientific.docking_ensemble

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Test: linux.clang.scientific.sb_franklin2019_mpddg

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Test: linux.clang.scientific.sb_score12_docking

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Test: gcc-10.gcc.unit

Failed sub-tests (click for more details):
protocols:AntibodySeqDesign:test_normal_tf_generation
Test: gcc-9.gcc.unit

Failed sub-tests (click for more details):
protocols:AntibodySeqDesign:test_normal_tf_generation
Test: linux.clang.unit

Failed sub-tests (click for more details):
protocols:AntibodySeqDesign:test_normal_tf_generation
Test: linux.gcc.unit

Failed sub-tests (click for more details):
protocols:AntibodySeqDesign:test_normal_tf_generation
Test: mac.clang.unit

Failed sub-tests (click for more details):
protocols:AntibodySeqDesign:test_normal_tf_generation