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Revisions №61404

branch: master 「№61404」
Commited by: Vikram K. Mulligan
GitHub commit link: 「35b3a5cfadfc2235」 「№4856」
Difference from previous tested commit:  code diff
Commit date: 2020-09-02 14:17:22
linux.clang linux.gcc linux.srlz mac.clang
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-9.gcc.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static build.xcode beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile release.source linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release gcc-9.gcc.unit util.apps

Merge pull request #4856 from RosettaCommons/vmullig/move_cavity_volume_from_devel_to_protocols Move CavityVolumeFilter from devel to protocols The `CavityVolumeFilter` was used in Silva _et al._ (2019.) De novo design of potent and selective mimics of IL-2 and IL-15. _Nature_ 565: 186–191, but the scripts in the supplement can not be run, and by extension the work that the paper describes is not reproducible, if this remains in devel. At least one person has been asking about this on the Rosetta forums. Tasks: - [x] Move this filter to protocols from devel. - [x] Move supporting class, the `CavityCalculator`, to protocols from devel. - [x] Add citation info. I'm going to count this as an unpublished module since Tom wasn't on the paper in which it first appeared, and it wasn't really described in that paper, and Tom might want to write a paper describing this. Also: - [x] Update the tools submodule to point at the latest master for the tools repo.