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Revisions №61367

branch: master 「№61367」
Commited by: Vikram K. Mulligan
GitHub commit link: 「a69d51d4b89e7070」
Difference from previous tested commit:  code diff
Commit date: 2020-08-15 17:06:06
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-9.gcc.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static mac.clang.static.build.release build.xcode beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck serialization code_quality.submodule_regression integration.addsan integration.mpi integration.release_debug integration.tensorflow integration.thread integration.tutorials integration.ubsan integration.valgrind integration maintenance.documentation performance profile linux.clang.python27.release.PyRosetta4.Debug linux.clang.python36.release.PyRosetta4.Debug linux.clang.python37.release.PyRosetta4.Debug linux.clang.python38.release.PyRosetta4.Debug mac.clang.python37.release.PyRosetta4.Debug linux.clang.python27.release.PyRosetta4.MinSizeRel linux.clang.python36.release.PyRosetta4.MinSizeRel linux.clang.python37.release.PyRosetta4.MinSizeRel linux.clang.python38.release.PyRosetta4.MinSizeRel ubuntu.clang.python27.release.PyRosetta4.MinSizeRel ubuntu.clang.python36.release.PyRosetta4.MinSizeRel ubuntu.clang.python37.release.PyRosetta4.MinSizeRel ubuntu.clang.python38.release.PyRosetta4.MinSizeRel linux.clang.python27.release.PyRosetta4.Release linux.clang.python36.release.PyRosetta4.Release linux.clang.python37.release.PyRosetta4.Release ubuntu.clang.python27.release.PyRosetta4.Release ubuntu.clang.python36.release.PyRosetta4.Release ubuntu.clang.python37.release.PyRosetta4.Release ubuntu.clang.python38.release.PyRosetta4.Release release.PyRosetta4.conda.Release release.source scientific.FlexPepDock scientific.antibody_grafting.debug scientific.antibody_grafting scientific.antibody_h3_modeling.debug scientific.ddg_ala_scan.debug scientific.dock_glycans scientific.docking.debug scientific.enzyme_design.debug scientific.ligand_docking.debug scientific.ligand_docking scientific.ligand_scoring_ranking.debug scientific.ligand_scoring_ranking scientific.loop_modeling_ccd_12res.debug scientific.loop_modeling_kic_12res.debug scientific.loop_modeling_kic_fragments_12res.debug scientific.loop_modeling_kic_fragments_12res scientific.loop_modeling_ngk_12res.debug scientific.mhc_epitope_energy scientific.mp_dock.debug scientific.mp_domain_assembly.debug scientific.mp_domain_assembly scientific.mp_f19_decoy_discrimination.debug scientific.mp_f19_energy_landscape.debug scientific.mp_f19_energy_landscape scientific.mp_f19_sequence_recovery.debug scientific.mp_f19_sequence_recovery scientific.mp_lipid_acc.debug scientific.mp_lipid_acc scientific.mp_relax.debug scientific.mp_symdock.debug scientific.peptide_pnear_vs_ic50.debug scientific.peptide_pnear_vs_ic50 scientific.protein_data_bank_diagnostic.full scientific.relax_cartesian.debug scientific.relax_fast.debug scientific.relax_fast_5iter scientific.relax_fast scientific.sewing.debug scientific.sewing scientific.simple_cycpep_predict linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan linux.clang.unit.release linux.gcc.unit.release unit.ubsan unit.valgrind gcc-9.gcc.unit util.apps

Possible fix to stochastic failure in HRFDyamicsEnergyTests (#4910) The one thing that I can see is that there's no check that the data read from each line of the initialization file can actually be interpreted as an int and a float (which the code expects). If this fails, the int and the float _should_ be set to 0 and 0.0, respectively, under the cxx11 standard, but earlier standards left the container variables unchanged. I'm wondering if that's what we're seeing here, resulting in stochastic behaviour since the int and the float are uninitialized. I'm adding a check that the line was properly parsed, and taking out the blank line in the config file. I don't know that this will fix the stochastic failure, but it can't hurt. Tasks: - [x] Add the check. - [x] Confirm that the unit test now fails consistently due to the blank line. - [x] Remove the blank line in the config file. - [x] Ensure that test passes. * Remove blank line in test. * Update tools repo to point at latest master.

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Test: linux.gcc.cxx11thread.mpi.serialization.scientific.simple_cycpep_predict

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