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Revisions №61266

branch: master 「№61266」
Commited by: Labonte
GitHub commit link: 「b0345481c5f90491」 「№4646」
Difference from previous tested commit:  code diff
Commit date: 2020-05-11 16:25:33
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-9.gcc.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static build.xcode beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile release.source scientific.antibody_h3_modeling.debug scientific.antibody_h3_modeling scientific.ddg_ala_scan.debug scientific.enzyme_design scientific.loop_modeling_ccd_12res.debug scientific.mp_domain_assembly.debug scientific.mp_f19_ddG_of_mutation.debug scientific.relax_fast_5iter.debug linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release gcc-9.gcc.unit util.apps

Merge pull request #4646 from RosettaCommons/yingyue0414-patch-add_kdn Add Keto-Deoxy-Nonulonic/Keto-Deoxy-Octulonic acid acid to Database

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Test: clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug

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Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
database_md5
Test: mac.clang.integration

Failed sub-tests (click for more details):
AnchoredDesign KIC_vicinity KIC_with_fragments PolarDesign2019 SnugDock UBQ_E2_thioester_two_ubiquitins add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup antibody_H3 antibody_designer_xml auto-drrafter_setup_run_R1 backbonegridsampler_nstruct_mode batch_relax beta_strand_homodimer bundlegridsampler_composition_energy bundlegridsampler_composition_energy_fract_range c-term_conjugation carbohydrates classic_relax_1a19 crosslinkermover_tetrahedral_metal_asp crosslinkermover_tma_symm cyclization database_md5 ddG_ensemble ddG_of_mutation density_refine density_refine_symm docking_ensemble_prepack drrafter_run enumerative_sampling enzdes farfar_mrna fast_relax flexpepdock flexpepdock_abinitio ga_ligand_dock glycan_refinment hbnet_energy hbnet_energy_rosettascripts_linear hbs_design helical_bundle_predict helical_bundle_predict_sequence helical_bundle_predict_skipping_residues helix_from_sequence hybridization inverse_rotamer_remodel kinemage_grid_output kinematic_looprelax ligand_database_io ligand_dock_script ligand_water_docking loop_grower_N_term_symm membrane_relax membrane_relax_hbond metalloprotein_abrelax min_pack_min minimize_with_elec_dens mirror_symm mp_mutate_relax mp_range_relax mp_relax mp_relax_w_ligand mp_symdock mr_protocols next_generation_KIC oligourea_predict peptiderive pertmin pna pocket_relax polyaramid_test_trivial ppi_v3_suiteA ppi_v3_suiteB ppi_v3_suiteC ppi_v3_suiteD ppi_v3_suiteE ppi_v3_suiteF ppi_v3_suiteG range_relax_w_cst relax_w_allatom_cst remodel_disulfides repeat_relax rna_denovo rna_denovo_base_pair_constraints rna_denovo_fragment_homology_exclusion rna_denovo_lariat rna_denovo_legacy rna_denovo_new_FT_2in_dens rna_denovo_new_FT_5P_j12_leadzyme rna_denovo_new_FT_RNP_2prot_dens rna_denovo_new_libs rna_farfar_noncanonical_hairpin rna_puzzle11_H2H3H4_run3_connectU40 rna_puzzle12_P5P6P7_DMS rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation rna_puzzle6_U75G76A77_on_thread1 rna_puzzle6_j67_into_p6p7rigidbody_thread1 sdf_reader simple_cycpep_predict simple_cycpep_predict_angle simple_cycpep_predict_cartesian simple_cycpep_predict_cterm_isopeptide_lariat simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_setting simple_cycpep_predict_sidechain_isopeptide simple_cycpep_predict_sidechain_isopeptide_reverse simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_tbmb simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_cycpep_predict_tetrahedral_metal simple_cycpep_predict_tetrahedral_metal_asp simple_cycpep_predict_tma simple_cycpep_predict_trigonal_planar_metal simple_cycpep_predict_trigonal_pyramidal_metal simple_grafting_movers simple_metric_cache simple_metric_features simple_metric_filter simple_metrics splice_in_4loops_shorter splice_out_H1_H2_longer splice_out_H1_H2_same splice_out_H3_longer splice_out_L1_L2_longer splice_out_L1_L2_same stored_residue_subset swa_protein_CCDclose swa_protein_build_at_Cterminus swa_protein_loop_sampler swa_protein_prepack swa_rna_erraser swa_rna_gagu_10_prepend_and_ccd_close swa_rna_gagu_13_chunk_combination_and_closure swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide swa_rna_gagu_18_rebuild_bulge swm_dna_bridge swm_dna_loop swm_protein_from_scratch swm_rna_base_pair_constraints swm_rna_move_align_dock swm_rna_srl_triplet symm_rotamer_boltzmann tcrmodel thermal_sampler threefold_symm_peptide_design torsion_restricted_sampling vancomycin vip voids_penalty_energy_design voids_penalty_energy_design_symmetry