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Revisions №61172

branch: master 「№61172」
Commited by: Vikram K. Mulligan
GitHub commit link: 「5534d82a77eba501」 「№4550」
Difference from previous tested commit:  code diff
Commit date: 2020-03-07 22:45:26
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug build.cppcheck alpine.gcc.build.debug gcc-9.gcc.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static mac.clang.static.build.release build.xcode beautification code_quality.clang_analysis code_quality.clang_tidy serialization code_quality.submodule_regression integration.addsan integration.mpi integration.release_debug integration.tensorflow integration.thread integration.ubsan integration.valgrind integration maintenance.documentation performance profile mac.clang.python36.release.PyRosetta4.MinSizeRel ubuntu.clang.python27.release.PyRosetta4.MinSizeRel ubuntu.clang.python35.release.PyRosetta4.MinSizeRel ubuntu.clang.python36.release.PyRosetta4.MinSizeRel ubuntu.clang.python37.release.PyRosetta4.MinSizeRel mac.clang.python36.release.PyRosetta4.Release ubuntu.clang.python27.release.PyRosetta4.Release ubuntu.clang.python35.release.PyRosetta4.Release ubuntu.clang.python36.release.PyRosetta4.Release ubuntu.clang.python37.release.PyRosetta4.Release release.source scientific.FlexPepDock.debug scientific.antibody_grafting.debug scientific.antibody_grafting scientific.antibody_snugdock.debug scientific.cofactor_binding_sites scientific.ddg_ala_scan.debug scientific.ddg_ala_scan scientific.docking.debug scientific.enzyme_design.debug scientific.ligand_docking.debug scientific.ligand_scoring_ranking scientific.loop_modeling_kic_12res.debug scientific.loop_modeling_ngk_12res.debug scientific.loop_modeling_ngk_12res scientific.mp_dock.debug scientific.mp_f19_decoy_discrimination.debug scientific.mp_f19_decoy_discrimination scientific.mp_f19_energy_landscape.debug scientific.mp_f19_energy_landscape scientific.mp_lipid_acc.debug scientific.mp_lipid_acc scientific.mp_relax scientific.mp_symdock scientific.protein_data_bank_diagnostic.full scientific.relax_cartesian.debug scientific.relax_cartesian scientific.relax_fast.debug scientific.relax_fast_5iter.debug scientific.rna_denovo_favorites.debug scientific.sewing.debug scientific.simple_cycpep_predict.debug scientific.stepwise_rna_favorites linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan linux.clang.unit.release linux.gcc.unit.release unit.ubsan unit.valgrind gcc-9.gcc.unit util.apps

Merge pull request #4550 from RosettaCommons/vmullig/no_cite_nodesign_packer_palette Minor adjustment to the NoDesignPackerPalette Tweak the citation registration for the NoDesignPackerPalette. Currently, this is being reported as an unpublished used module in any RosettaScripts script that uses FastRelax (which uses the NoDesignPackerPalette under the hood). This is not a sufficiently important use of the NoDesignPackerPalette to warrant pointing it out to the user. I'm moving the registration with the CitationManager to the parse_my_tag() function so that only explicitly-scripted NoDesignPackerPalettes trigger an unpublished module warning. (This should NOT be the general pattern followed for all unpublished modules).

...
Test: ubuntu.clang.code_quality.clang_tidy

Failed sub-tests (click for more details):
src/apps/public/rosetta_scripts/rosetta_scripts.cc src/basic/citation_manager/Citation.cc src/basic/citation_manager/CitationCollection.cc src/basic/citation_manager/CitationManager.cc src/basic/citation_manager/UnpublishedModuleAuthor.cc src/basic/citation_manager/UnpublishedModuleInfo.cc src/core/chemical/carbohydrates/CarbohydrateInfoManager.cc src/core/energy_methods/AACompositionEnergy.cc src/core/energy_methods/NetChargeEnergy.cc src/core/pack/guidance_scoreterms/approximate_buried_unsat_penalty/ApproximateBuriedUnsatPenalty.cc src/core/pack/guidance_scoreterms/buried_unsat_penalty/BuriedUnsatPenalty.cc src/core/pack/guidance_scoreterms/hbnet_energy/HBNetEnergy.cc src/core/pack/guidance_scoreterms/voids_penalty_energy/VoidsPenaltyEnergy.cc src/core/pack/palette/CustomBaseTypePackerPalette.cc src/core/pack/palette/DefaultPackerPalette.cc src/core/pack/palette/NCAADefaultPackerPalette.cc src/core/pack/palette/NoDesignPackerPalette.cc src/core/scoring/ScoreFunction.cc src/core/select/residue_selector/AndResidueSelector.cc src/core/select/residue_selector/LayerSelector.cc src/core/select/residue_selector/NeighborhoodResidueSelector.cc src/core/select/residue_selector/NotResidueSelector.cc src/core/select/residue_selector/OrResidueSelector.cc src/core/select/residue_selector/SliceResidueSelector.cc src/core/simple_metrics/metrics/DihedralDistanceMetric.cc src/core/simple_metrics/metrics/InteractionEnergyMetric.cc src/core/simple_metrics/metrics/RMSDMetric.cc src/core/simple_metrics/metrics/ResidueSummaryMetric.cc src/core/simple_metrics/metrics/SasaMetric.cc src/core/simple_metrics/metrics/SecondaryStructureMetric.cc src/core/simple_metrics/metrics/SelectedResidueCountMetric.cc src/core/simple_metrics/metrics/SelectedResiduesMetric.cc src/core/simple_metrics/metrics/SelectedResiduesPyMOLMetric.cc src/core/simple_metrics/metrics/SequenceMetric.cc src/core/simple_metrics/metrics/SequenceSimilarityMetric.cc src/core/simple_metrics/metrics/TimingProfileMetric.cc src/core/simple_metrics/metrics/TotalEnergyMetric.cc src/protocols/analysis/GlycanInfoMover.cc src/protocols/analysis/simple_metrics/RunSimpleMetricsMover.cc src/protocols/antibody/AntibodyCDRGrafter.cc src/protocols/antibody/AntibodyNumberingConverterMover.cc src/protocols/antibody/constraints/CDRDihedralConstraintMover.cc src/protocols/antibody/constraints/ParatopeEpitopeSiteConstraintMover.cc src/protocols/antibody/constraints/ParatopeSiteConstraintMover.cc src/protocols/antibody/design/AntibodyDesignMover.cc src/protocols/antibody/design/MutateFrameworkForCluster.cc src/protocols/calc_taskop_movers/CreateSequenceMotifMover.cc src/protocols/carbohydrates/CreateGlycanSequonMover.cc src/protocols/carbohydrates/GlycanSampler.cc src/protocols/carbohydrates/GlycanTreeMinMover.cc src/protocols/carbohydrates/GlycanTreeModeler.cc src/protocols/carbohydrates/IdealizeAnomericHydrogens.cc src/protocols/carbohydrates/LinkageConformerMover.cc src/protocols/carbohydrates/RingPlaneFlipMover.cc src/protocols/carbohydrates/SimpleGlycosylateMover.cc src/protocols/carbohydrates/TautomerizeAnomerMover.cc src/protocols/cyclic_peptide/SymmetricCycpepAlign.cc src/protocols/cyclic_peptide/TryDisulfPermutations.cc src/protocols/denovo_design/movers/FastDesign.cc src/protocols/enzymatic_movers/EnzymaticMover.cc src/protocols/enzymatic_movers/GlycosyltransferaseMover.cc src/protocols/enzymatic_movers/KinaseMover.cc src/protocols/features/ReportToDB.cc src/protocols/generalized_kinematic_closure/GeneralizedKIC.cc src/protocols/grafting/AnchoredGraftMover.cc src/protocols/grafting/CCDEndsGraftMover.cc src/protocols/grafting/simple_movers/DeleteRegionMover.cc src/protocols/grafting/simple_movers/InsertPoseIntoPoseMover.cc src/protocols/grafting/simple_movers/KeepRegionMover.cc src/protocols/grafting/simple_movers/ReplaceRegionMover.cc src/protocols/helical_bundle/BackboneGridSampler.cc src/protocols/helical_bundle/BundleGridSampler.cc src/protocols/helical_bundle/MakeBundle.cc src/protocols/helical_bundle/PerturbBundle.cc src/protocols/indexed_structure_store/filters/FragmentLookupFilter.cc src/protocols/ligand_docking/FinalMinimizer.cc src/protocols/ligand_docking/HighResDocker.cc src/protocols/ligand_docking/HighResEnsemble.cc src/protocols/ligand_docking/InterfaceScoreCalculator.cc src/protocols/ligand_docking/ProtLigEnsemble.cc src/protocols/ligand_docking/StartFrom.cc src/protocols/ligand_docking/Transform.cc src/protocols/ligand_docking/TransformEnsemble.cc src/protocols/loop_grower/FragmentExtension.cc src/protocols/loop_grower/LoopGrower.cc src/protocols/loop_grower/SheetSampler.cc src/protocols/monte_carlo/GenericMonteCarloMover.cc src/protocols/moves/Mover.cc src/protocols/moves/MoverContainer.cc src/protocols/protein_interface_design/movers/LoopOver.cc src/protocols/relax/FastRelax.cc src/protocols/relax/RelaxProtocolBase.cc src/protocols/rosetta_scripts/ParsedProtocol.cc src/protocols/simple_moves/BBDihedralSamplerMover.cc src/protocols/simple_moves/ConvertRealToVirtualMover.cc src/protocols/simple_moves/ConvertVirtualToRealMover.cc src/protocols/simple_moves/DeleteChainsMover.cc src/protocols/simple_moves/RingConformationMover.cc src/protocols/simple_moves/SetupMetalsMover.cc src/protocols/simple_moves/SimpleThreadingMover.cc
Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
threefold_symm_peptide_design
Test: linux.clang.scientific.mp_symdock

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