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Revisions №61121

branch: master 「№61121」
Commited by: Vikram K. Mulligan
GitHub commit link: 「2fa58f79ed5e5543」 「№4465」
Difference from previous tested commit:  code diff
Commit date: 2020-01-31 02:41:12
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug cppcheck alpine.gcc.build.debug gcc-9.gcc.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static mac.clang.static.build.release linux.ui mac.ui build.xcode beautification code_quality.clang_analysis serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration.tutorials integration.ubsan integration maintenance.documentation performance profile linux.clang.python27.release.PyRosetta4.Debug linux.clang.python35.release.PyRosetta4.Debug linux.clang.python37.release.PyRosetta4.MinSizeRel ubuntu.clang.python27.release.PyRosetta4.MinSizeRel ubuntu.clang.python35.release.PyRosetta4.MinSizeRel ubuntu.clang.python37.release.PyRosetta4.MinSizeRel linux.clang.python35.release.PyRosetta4.Release ubuntu.clang.python27.release.PyRosetta4.Release ubuntu.clang.python35.release.PyRosetta4.Release ubuntu.clang.python37.release.PyRosetta4.Release release.source scientific.antibody_grafting.debug scientific.antibody_grafting scientific.antibody_h3_modeling scientific.antibody_snugdock.debug scientific.ligand_docking.debug scientific.ligand_scoring_ranking.debug scientific.loop_modeling_ccd_12res.debug scientific.loop_modeling_kic_fragments_12res.debug scientific.loop_modeling_ngk_12res.debug scientific.mp_f19_energy_landscape.debug scientific.mp_f19_energy_landscape scientific.mp_symdock scientific.relax_cartesian scientific.relax_fast scientific.sewing scientific.simple_cycpep_predict.debug linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release unit.ubsan gcc-9.gcc.unit util.apps

Merge pull request #4465 from RosettaCommons/vmullig/fix_james_helical_bundle_predict_issues_2 Fix an issue with, and add some features to, helical_bundle_predict. This PR: - [x] Fixes a silly bug in parsing FASTA files in helical_bundle_predict. - [x] Adds an option to skip residues in the native structure in alignments. - [x] Adds an option to skip residues in the generated structure in alignments. - [x] Adds integration tests for the new options. - [x] Adds documentation for the new options.

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