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Revisions №61110

branch: master 「№61110」
Commited by: Henry Solberg
GitHub commit link: 「e3dc1d862146de1a」
Difference from previous tested commit:  code diff
Commit date: 2020-01-20 18:17:36
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug cppcheck alpine.gcc.build.debug gcc-9.gcc.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static mac.clang.static.build.release linux.ui mac.ui build.xcode beautification code_quality.clang_analysis code_quality.clang_tidy serialization code_quality.submodule_regression integration.addsan integration.mpi integration.release_debug integration.tensorflow integration.thread integration.tutorials integration.ubsan integration.valgrind integration maintenance.documentation performance profile linux.clang.python27.release.PyRosetta4.Debug linux.clang.python35.release.PyRosetta4.Debug linux.clang.python36.release.PyRosetta4.Debug linux.clang.python37.release.PyRosetta4.Debug mac.clang.python35.release.PyRosetta4.Debug linux.clang.python27.release.PyRosetta4.MinSizeRel linux.clang.python35.release.PyRosetta4.MinSizeRel linux.clang.python36.release.PyRosetta4.MinSizeRel linux.clang.python37.release.PyRosetta4.MinSizeRel ubuntu.clang.python27.release.PyRosetta4.MinSizeRel ubuntu.clang.python35.release.PyRosetta4.MinSizeRel ubuntu.clang.python36.release.PyRosetta4.MinSizeRel ubuntu.clang.python37.release.PyRosetta4.MinSizeRel linux.clang.python27.release.PyRosetta4.Release linux.clang.python35.release.PyRosetta4.Release linux.clang.python36.release.PyRosetta4.Release linux.clang.python37.release.PyRosetta4.Release mac.clang.python27.release.PyRosetta4.Release ubuntu.clang.python27.release.PyRosetta4.Release ubuntu.clang.python35.release.PyRosetta4.Release ubuntu.clang.python36.release.PyRosetta4.Release ubuntu.clang.python37.release.PyRosetta4.Release release.PyRosetta4.conda.Release release.source scientific.antibody_grafting.debug scientific.antibody_grafting scientific.cofactor_binding_sites scientific.dock_glycans scientific.docking.debug scientific.docking scientific.enzyme_design.debug scientific.ligand_docking.debug scientific.ligand_docking scientific.ligand_scoring_ranking.debug scientific.loop_modeling_ccd_12res.debug scientific.loop_modeling_kic_fragments_12res.debug scientific.loop_modeling_kic_fragments_12res scientific.loop_modeling_ngk_12res.debug scientific.mhc_epitope_energy.debug scientific.mp_domain_assembly scientific.mp_f19_ddG_of_mutation scientific.mp_f19_decoy_discrimination.debug scientific.mp_f19_decoy_discrimination scientific.mp_f19_energy_landscape.debug scientific.mp_f19_sequence_recovery.debug scientific.mp_lipid_acc scientific.mp_relax scientific.protein_data_bank_diagnostic.full scientific.relax_cartesian scientific.relax_fast scientific.rna_denovo_favorites scientific.sewing scientific.stepwise_rna_favorites.debug scientific.stepwise_rna_favorites linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan linux.clang.unit.release linux.gcc.unit.release unit.ubsan unit.valgrind gcc-9.gcc.unit util.apps

Changes to get the libraries building on windows - Merge pull request #4448 from RosettaCommons/solberg/minirosetta_windows In src/protocols/jd3/JobGenealogist.hh, the hash function for some custom classes (which themselves didn't seem to be much more than pointers) could not be found since they're in another namespace, (and then not part of the custom class itself and only included via using), so I put in explicit hash functions for the unsorted_sets. In src/protocols/jd3/util.cc and /src/core/io/mmtf/util.hh there were some ambiguous types for which I had to guess at which one was intended, hopefully I guessed correctly. Had to add in lot of #includes which were probably forgotten due to gcc's order of compilation happening to include them from elsewhere before needed, or something like that (owning_ptr.hh was the most common) Had to remove direct usages of std::make_shared- I believe we are intended to be using utility::pointer::make_shared, and directly calling std::make_shared causes mixture between boost and std shared pointers. Removed an exit "status" variable that I couldn't find the definition for in src/utility/exit.cc . Just replaced it with "1" since it seemed to be used for exit failures. Fixed a naming collision in src/utility/pointer/deep_copy.hh S_ISREG and S_ISDIR are linux-only things. Replaced them with boost is_directory in src/protocols/docking/DockingEnsemble.cc In src/protocols/boinc/boinc.cc, reverted a change from Oct 31st 2018 which caused (I think) a partially specialized template

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Test: ubuntu.gcc.integration.addsan

Failed sub-tests (click for more details):
drrafter_setup_real_test_H_no_init
Test: linux.clang.integration.tutorials

Failed sub-tests (click for more details):
prepare_ligand protein_design
Test: ubuntu.gcc.integration.ubsan

Failed sub-tests (click for more details):
drrafter_setup_real_test_H_no_init
Test: linux.gcc.integration.valgrind

Failed sub-tests (click for more details):
small_molecule_lattice_dock
Test: linux.clang.performance

Failed sub-tests (click for more details):
core_scoring_Score_100x_envsmooth
Test: linux.clang.scientific.dock_glycans

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Test: linux.clang.scientific.docking.debug

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Test: linux.clang.scientific.mp_lipid_acc

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Test: linux.clang.scientific.relax_cartesian

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Test: linux.clang.scientific.relax_fast

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