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Revisions №61080

branch: master 「№61080」
Commited by: Sergey Lyskov
GitHub commit link: 「a68ac283f6d6ee69」 「№4401」
Difference from previous tested commit:  code diff
Commit date: 2019-12-13 22:36:46
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug cppcheck alpine.gcc.build.debug gcc-9.gcc.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels ninja graphics static mac.clang.static.build.release linux.ui mac.ui build.xcode beautification code_quality.clang_analysis serialization integration.mpi integration.release_debug integration.tensorflow integration.thread integration.tutorials integration maintenance.documentation performance profile release.source scientific.antibody_grafting.debug scientific.antibody_grafting scientific.enzyme_design scientific.mp_f19_ddG_of_mutation scientific.mp_f19_decoy_discrimination.debug scientific.mp_f19_sequence_recovery.debug scientific.mp_relax.debug scientific.mp_relax scientific.relax_cartesian scientific.relax_fast_5iter scientific.relax_fast scientific.stepwise_rna_favorites.debug linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release gcc-9.gcc.unit util.apps

Merge pull request #4401 from RosettaCommons/jkleman/SciBen_sfxns renaming relax scientific tests

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Test: linux.clang.serialization.python36.PyRosetta4.notebook

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Test: linux.clang.build.cppcheck

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Test: mac.clang.integration

Failed sub-tests (click for more details):
auto-drrafter_setup_run_R1
Test: linux.clang.scientific.relax_cartesian

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Test: linux.clang.scientific.relax_fast_5iter

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Test: linux.clang.scientific.relax_fast

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Test: gcc-9.gcc.unit

Failed sub-tests (click for more details):
core:ContactOrderEnergy_Tests:test_eval_energy core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_beta_nov15 core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_atr core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_dun core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_elec core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_rep core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_sol core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_hbonds core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_lk_ball_wtd core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_omega core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_pro_close core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_rama core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_yhh_planarity core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_beta core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_cart_bonded core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_atr core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_dun_rot core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_elec core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_intra_elec core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_sol core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_hbonds core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_hxl_tors core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_lk_ball core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_lk_ball_iso core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_omega core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_rama core:PCSDataTests:test_PCSData_creation_by_NMRDataFactory core:PCSDataTests:test_PCSData_instantiation core:PCSDataTests:test_PCSData_score_calculation_with_gridsearch core:PCSDataTests:test_PCSData_score_calculation_with_spinlabel core:PCSDataTests:test_scaled_PCSData_score_calculation core:PCSSingleSetSymmetryTests:test_calc_tensor_and_score_nls_automatic_symmetry_deduction core:PCSSingleSetSymmetryTests:test_calc_tensor_and_score_nls_manual_symmetry_handling core:PCSSingleSetSymmetryTests:test_calc_tensor_and_score_svd_automatic_symmetry_deduction core:PCSSingleSetSymmetryTests:test_calc_tensor_and_score_svd_manual_symmetry_handling core:PDB_w_glycans_IO:test_glycan_fragment core:PDB_w_glycans_IO:test_pdb_io core:RotamerSetsTests:test_rotamer_set_add_rotamer_into_existing_group1 core:RotamerSetsTests:test_rotamer_set_add_rotamer_into_existing_group2 core:RotamerSetsTests:test_rotamer_set_add_rotamer_into_existing_group3 core:RotamerSetsTests:test_rotamer_set_add_rotamer_into_existing_group4 core:RotamerSetsTests:test_rotamer_set_residue_type_offsets core:RotamerSetsTests:test_rotamer_sets core:SequenceSymmetricAnnealerTests:test_chain_similarity_after_packing core:SequenceSymmetricAnnealerTests:test_chain_similarity_after_packing_cli core:SequenceSymmetricAnnealerTests:test_chain_similarity_with_virtual_root core:SequenceSymmetricAnnealerTests:test_recover_symmetry core:SequenceSymmetricAnnealerTests:test_residue_selectors core:SequenceSymmetricAnnealerTests:test_unequal_chain_lengths core:SimpleMetricTests:test_composite_real_metric core:SimpleMetricTests:test_composite_string_metric core:SimpleMetricTests:test_glycan_layer_metric core:SimpleMetricTests:test_interaction_energy_metric core:SimpleMetricTests:test_per_residue_clash_metric core:SimpleMetricTests:test_per_residue_real_metric core:SimpleMetricTests:test_per_residue_string_metric core:SimpleMetricTests:test_real_metric core:SimpleMetricTests:test_residue_summary_metric core:SimpleMetricTests:test_sasa_metric core:SimpleMetricTests:test_seq_metric core:SimpleMetricTests:test_ss_metric core:SimpleMetricTests:test_string_metric core:SimpleMetricTests:test_utility_metrics core:SingleNCAARotamerLibraryTests:test_B3C_rotamer_well_scoring core:SingleNCAARotamerLibraryTests:test_B3N_rotamer_well_scoring core:SingleNCAARotamerLibraryTests:test_DAB_rotamer_well_scoring core:SingleNCAARotamerLibraryTests:test_DPP_rotamer_well_scoring core:SingleNCAARotamerLibraryTests:test_ORN_rotamer_well_scoring core:SingleNCAARotamerLibraryTests:test_d_nme_trp_rotamer_well_scoring core:SingleNCAARotamerLibraryTests:test_equivalence_independent_of_rotamer_order core:SingleNCAARotamerLibraryTests:test_nme_trp_rotamer_well_scoring core:SingleNCAARotamerLibraryTests:test_peptoid_001_off_rotamer_scoring core:SingleNCAARotamerLibraryTests:test_peptoid_001_off_rotamer_scoring_2 core:SingleNCAARotamerLibraryTests:test_peptoid_001_rotamer_well_scoring core:SingleNCAARotamerLibraryTests:test_peptoid_001_spikes_in_dunbrack_landscape core:SingleNCAARotamerLibraryTests:test_peptoid_001_spikes_in_dunbrack_landscape_2 core:SingleNCAARotamerLibraryTests:test_peptoid_601_rotamer_well_scoring core:SingleNCAARotamerLibraryTests:test_peptoid_602_rotamer_well_scoring core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_beta_sfxn core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_cart_bonded core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_current_default_scorefxn core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_dslf_fa13 core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_atr core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_dun core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_elec core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_intra_rep core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_intra_sol_xover4 core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_rep core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_fa_sol core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_hbonds core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_lk_ball_wtd core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_omega core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_p_aa_pp core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_pro_close core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_rama core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_rama_prepro core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_rama_prepro2 core:SymmDLMin_nmethyl_beta_Tests:test_symm_DL_min_yhh_planarity core:SymmDLMin_peptoid_Tests:test_symm_DL_min_cart_bonded core:SymmDLMin_peptoid_Tests:test_symm_DL_min_current_default_scorefxn core:SymmDLMin_peptoid_Tests:test_symm_DL_min_dslf_fa13 core:SymmDLMin_peptoid_Tests:test_symm_DL_min_fa_atr core:SymmDLMin_peptoid_Tests:test_symm_DL_min_fa_dun core:SymmDLMin_peptoid_Tests:test_symm_DL_min_fa_elec core:SymmDLMin_peptoid_Tests:test_symm_DL_min_fa_intra_rep core:SymmDLMin_peptoid_Tests:test_symm_DL_min_fa_rep core:SymmDLMin_peptoid_Tests:test_symm_DL_min_fa_sol core:SymmDLMin_peptoid_Tests:test_symm_DL_min_hbonds core:SymmDLMin_peptoid_Tests:test_symm_DL_min_omega core:SymmDLMin_peptoid_Tests:test_symm_DL_min_p_aa_pp core:SymmDLMin_peptoid_Tests:test_symm_DL_min_pro_close core:SymmDLMin_peptoid_Tests:test_symm_DL_min_rama core:SymmDLMin_peptoid_Tests:test_symm_DL_min_rama_prepro core:SymmDLMin_peptoid_Tests:test_symm_DL_min_rama_prepro2 core:SymmDLMin_peptoid_Tests:test_symm_DL_min_talaris2014 core:SymmDLMin_peptoid_Tests:test_symm_DL_min_yhh_planarity core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_beta_sfxn core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_cart_bonded core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_current_default_scorefxn core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_dslf_fa13 core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_atr core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_dun core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_elec core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_intra_rep core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_intra_sol_xover4 core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_rep core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_fa_sol core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_hbonds core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_lk_ball_wtd core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_omega core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_p_aa_pp core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_pro_close core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_rama core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_rama_prepro core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_rama_prepro2 core:SymmDLMin_peptoid_beta_Tests:test_symm_DL_min_yhh_planarity core:SymmDL_peptoid_Tests:test_peptoid_mirroring core:SymmDL_peptoid_Tests:test_symm_DL_cart_bonded core:SymmDL_peptoid_Tests:test_symm_DL_default_scorefxn core:SymmDL_peptoid_Tests:test_symm_DL_dslf_fa13 core:SymmDL_peptoid_Tests:test_symm_DL_fa_atr core:SymmDL_peptoid_Tests:test_symm_DL_fa_dun core:SymmDL_peptoid_Tests:test_symm_DL_fa_elec core:SymmDL_peptoid_Tests:test_symm_DL_fa_intra_rep core:SymmDL_peptoid_Tests:test_symm_DL_fa_rep core:SymmDL_peptoid_Tests:test_symm_DL_fa_sol core:SymmDL_peptoid_Tests:test_symm_DL_hbonds core:SymmDL_peptoid_Tests:test_symm_DL_omega core:SymmDL_peptoid_Tests:test_symm_DL_p_aa_pp core:SymmDL_peptoid_Tests:test_symm_DL_pro_close core:SymmDL_peptoid_Tests:test_symm_DL_rama core:SymmDL_peptoid_Tests:test_symm_DL_rama_prepro core:SymmDL_peptoid_Tests:test_symm_DL_rama_prepro2 core:SymmDL_peptoid_Tests:test_symm_DL_talaris2014 core:SymmDL_peptoid_Tests:test_symm_DL_yhh_planarity core:SymmGlyMinTests:test_single_gly_min_cart_bonded core:SymmGlyMinTests:test_symm_gly_min_cart_bonded core:SymmGlyMinTests:test_symm_gly_min_default_scorefxn core:SymmGlyMinTests:test_symm_gly_min_fa_atr core:SymmGlyMinTests:test_symm_gly_min_fa_dun core:SymmGlyMinTests:test_symm_gly_min_fa_elec core:SymmGlyMinTests:test_symm_gly_min_fa_intra_rep core:SymmGlyMinTests:test_symm_gly_min_fa_rep core:SymmGlyMinTests:test_symm_gly_min_fa_sol core:SymmGlyMinTests:test_symm_gly_min_hbonds core:SymmGlyMinTests:test_symm_gly_min_omega core:SymmGlyMinTests:test_symm_gly_min_p_aa_pp core:SymmGlyMinTests:test_symm_gly_min_rama core:SymmGlyMinTests:test_symm_gly_min_rama_prepro core:SymmGlyMinTests:test_symm_gly_min_talaris2014 core:SymmGlyMinTests:test_symm_gly_min_talaris2014_cart core:SymmGlyMinTests:test_two_gly_min_cart_bonded core:SymmGlyMin_betanov15_Tests:test_single_gly_min_cart_bonded core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_beta_nov15 core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_beta_nov15_cart core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_cart_bonded core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_default_scorefxn core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_atr core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_dun core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_elec core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_intra_rep core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_intra_sol_xover4 core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_rep core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_fa_sol core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_hbonds core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_lk_ball_wtd core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_omega core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_p_aa_pp core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_rama core:SymmGlyMin_betanov15_Tests:test_symm_gly_min_rama_prepro core:SymmGlyMin_betanov15_Tests:test_two_gly_min_cart_bonded core:SymmGlyTests:test_symm_gly_cart_bonded core:SymmGlyTests:test_symm_gly_default_scorefxn core:SymmGlyTests:test_symm_gly_fa_atr core:SymmGlyTests:test_symm_gly_fa_dun core:SymmGlyTests:test_symm_gly_fa_elec core:SymmGlyTests:test_symm_gly_fa_intra_rep core:SymmGlyTests:test_symm_gly_fa_rep core:SymmGlyTests:test_symm_gly_fa_sol core:SymmGlyTests:test_symm_gly_hbonds core:SymmGlyTests:test_symm_gly_omega core:SymmGlyTests:test_symm_gly_p_aa_pp core:SymmGlyTests:test_symm_gly_rama core:SymmGlyTests:test_symm_gly_rama_prepro core:SymmGlyTests:test_symm_gly_talaris2014 core:SymmGly_betanov15_Tests:test_symm_gly_beta_nov15 core:SymmGly_betanov15_Tests:test_symm_gly_cart_bonded core:SymmGly_betanov15_Tests:test_symm_gly_default_scorefxn core:SymmGly_betanov15_Tests:test_symm_gly_fa_atr core:SymmGly_betanov15_Tests:test_symm_gly_fa_dun core:SymmGly_betanov15_Tests:test_symm_gly_fa_elec core:SymmGly_betanov15_Tests:test_symm_gly_fa_intra_rep core:SymmGly_betanov15_Tests:test_symm_gly_fa_intra_sol_xover4 core:SymmGly_betanov15_Tests:test_symm_gly_fa_rep core:SymmGly_betanov15_Tests:test_symm_gly_fa_sol core:SymmGly_betanov15_Tests:test_symm_gly_hbonds core:SymmGly_betanov15_Tests:test_symm_gly_lk_ball_wtd core:SymmGly_betanov15_Tests:test_symm_gly_omega core:SymmGly_betanov15_Tests:test_symm_gly_p_aa_pp core:SymmGly_betanov15_Tests:test_symm_gly_rama core:SymmGly_betanov15_Tests:test_symm_gly_rama_prepro core:TestAutoDetectGlycanConnections:test_auto_detect_mmtf_readwrite core:TestAutoDetectGlycanConnections:test_auto_detect_pdb_read protocols:MRSJobQueenTests:test_MRSJobQueen_with_good_input protocols:MRSJobQueenTests:test_incorrect_attribute_value protocols:MRSJobQueenTests:test_not_enough_job_results_for_next_node protocols:MRSJobQueenTests:test_tag_for_nonmover_nonfilter protocols:MRSJobQueenTests:test_typo_in_score_function protocols:MembraneUtil:test_angle_rmsd_method protocols:MembraneUtil:test_average_antiparallel_embeddings protocols:MembraneUtil:test_average_embeddings protocols:MembraneUtil:test_calc_helix_angles protocols:MembraneUtil:test_calc_helix_axis protocols:MembraneUtil:test_chain_com protocols:MembraneUtil:test_check_vector protocols:MembraneUtil:test_compute_embeddings_by_chain protocols:MembraneUtil:test_compute_structure_based_embedding1 protocols:MembraneUtil:test_compute_structure_based_embedding2 protocols:MembraneUtil:test_compute_structure_based_embedding3 protocols:MembraneUtil:test_compute_structure_based_embedding4 protocols:MembraneUtil:test_compute_structure_based_embedding5 protocols:MembraneUtil:test_compute_structure_based_embedding6 protocols:MembraneUtil:test_compute_structure_based_embedding7 protocols:MembraneUtil:test_compute_structure_based_embedding8 protocols:MembraneUtil:test_create_membrane_docking_foldtree_from_partners protocols:MembraneUtil:test_create_membrane_foldtree_anchor_com protocols:MembraneUtil:test_create_membrane_foldtree_anchor_pose_tmcom protocols:MembraneUtil:test_create_membrane_foldtree_anchor_tmcom protocols:MembraneUtil:test_create_membrane_multi_partner_foldtree_anchor_tmcom protocols:MembraneUtil:test_create_specific_membrane_foldtree protocols:MembraneUtil:test_is_fixed_on_fixed_memb protocols:MembraneUtil:test_is_fixed_on_moveable_memb protocols:MembraneUtil:test_is_independently_moveable_on_fixed_memb protocols:MembraneUtil:test_is_independently_moveable_on_independently_moveable_memb protocols:MembraneUtil:test_membrane_bb_rmsd_no_super protocols:MembraneUtil:test_membrane_bb_rmsd_no_super_allatom protocols:MembraneUtil:test_membrane_bb_rmsd_with_super protocols:MembraneUtil:test_membrane_bb_rmsd_with_super_allatom protocols:MembraneUtil:test_pose_tm_COM protocols:MembraneUtil:test_rsd_closest_chain_com protocols:MembraneUtil:test_rsd_closest_chain_tm_com protocols:MembraneUtil:test_rsd_closest_pose_tm_COM protocols:MembraneUtil:test_split_topology_by_chain_noshift protocols:MembraneUtil:test_split_topology_by_jump protocols:MembraneUtil:test_split_topology_by_jump_noshift protocols:MembraneUtil:test_tm_com protocols:MoverFactoryTests:test_MoverFactory_all_Mover_all_attributes_have_descriptions protocols:MoverFactoryTests:test_MoverFactory_all_Mover_complexTypes_have_descriptions protocols:MoverFactoryTests:test_all_movers_define_valid_xsds protocols:NubInitioMoverTests:test_name protocols:NubInitioMoverTests:test_one_motif protocols:NubInitioMoverTests:test_two_motifs protocols:RNA_DeNovoOptimizerTest:test_sarcin_ricin_loop_buildup protocols:RNA_DeNovoProtocolTest:test_sarcin_ricin_loop_fixed protocols:RNA_DeNovoProtocolTest:test_sarcin_ricin_loop_free_with_base_pair_steps protocols:RNA_DeNovoProtocolTest:test_save_times_option protocols:RotamerRecoveryTests:test_RotamerRecovery_main protocols:SimpleMetricProtocolsTests:test_composite_real_metric protocols:SimpleMetricProtocolsTests:test_composite_string_metric protocols:SimpleMetricProtocolsTests:test_composite_total_energy_metric protocols:SimpleMetricProtocolsTests:test_dihedral_metric protocols:SimpleMetricProtocolsTests:test_protocol_settings_metric protocols:SimpleMetricProtocolsTests:test_real_metric protocols:SimpleMetricProtocolsTests:test_rmsd_metric protocols:SimpleMetricProtocolsTests:test_string_metric protocols:SimpleMetricProtocolsTests:test_total_energy_metric protocols:SpinAroundPartnerMoverTest:test_constructor_from_jumpnum protocols:SpinAroundPartnerMoverTest:test_spinaroundpartner_parse_my_tag_input protocols:StartFromTests:test_PDB_file protocols:StartFromTests:test_PDB_file_atom_name protocols:StartFromTests:test_hash_tag protocols:StartFromTests:test_json_file protocols:StartFromTests:test_multiple_positions protocols:StartFromTests:test_pdb_tag protocols:StartFromTests:test_specified_position protocols:StartFromTests:test_specified_position_nbr protocols:StartFromTests:test_spurious_items protocols:SwitchChainOrderMoverTests:test_pdbinfo_labels protocols:TiltMoverTest:test_constructor_from_jumpnum_and_angle protocols:TiltMoverTest:test_tiltmover_parse_my_tag_input protocols:XmlObjectsTests:test_file_instantiation protocols:XmlObjectsTests:test_includes protocols:XmlObjectsTests:test_parsed_protocol protocols:XmlObjectsTests:test_static_instantiation_filter protocols:XmlObjectsTests:test_static_instantiation_mover protocols:XmlObjectsTests:test_static_instantiation_residue_selector protocols:XmlObjectsTests:test_static_instantiation_score_function protocols:XmlObjectsTests:test_static_instantiation_simple_metric protocols:XmlObjectsTests:test_static_instantiation_taskop protocols:XmlObjectsTests:test_string_instantiation