「view this page in B3 βῆτα server」

Revisions №61078

branch: master 「№61078」
Commited by: Rocco Moretti
GitHub commit link: 「0d1716fc66549856」 「№4397」
Difference from previous tested commit:  code diff
Commit date: 2019-12-13 15:48:51
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug cppcheck alpine.gcc.build.debug gcc-9.gcc.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels ninja graphics static linux.ui mac.ui build.xcode beautification code_quality.clang_analysis serialization integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile release.source scientific.cartesian_relax.debug linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release gcc-9.gcc.unit util.apps

Merge pull request #4397 from RosettaCommons/roccomoretti/cppcheck_188_fixes Some fixes for cppcheck 1.88 Sergey is looking to update some backends on the test server. This will involve updating the cppcheck version to 1.88. That newer version catches more things. To avoid perma-failing on the cppcheck, we should address the new issues. I had already updated the known issues list with existing cppcheck 1.88 issues, but a few new ones have slipped through since. I've either just fixed them, or have updated the cppcheck suppression list to simply ignore a style test which doesn't quite match how we use Rosetta.

...
Test: linux.clang.serialization.python36.PyRosetta4.notebook

 View log

Loading...

 View log in dialog  View log in log in separate window
Test: gcc-9.gcc.unit

Failed sub-tests (click for more details):
core:AtomicDepthTests:test_AtomicDepth_depth_test_14 core:AtomicDepthTests:test_AtomicDepth_depth_test_40 core:AtomicDepthTests:test_AtomicDepth_depth_test_oob core:AtomicDepthTests:test_AtomicDepth_depth_test_polyleu_40 core:AtomicDepthTests:test_AtomicDepth_depth_test_util_40 core:ClashBasedShellSelectorTests:test_add_clashes_to_shell core:ClashBasedShellSelectorTests:test_bool_mask_from_resnums core:ClashBasedShellSelectorTests:test_bool_mask_from_task core:ClashBasedShellSelectorTests:test_is_sc_xx_clash core:ClashBasedShellSelectorTests:test_parse_my_tag core:ClashBasedShellSelectorTests:test_resnums_from_bool_mask core:ClashBasedShellSelectorTests:test_resnums_from_task core:ClashBasedShellSelectorTests:test_selections core:ClashBasedShellSelectorTests:test_task_from_bool_mask core:ClashBasedShellSelectorTests:test_task_from_resnums core:ContactOrderEnergy_Tests:test_eval_energy core:CyclicGeometryTwoChainTests:test_cyclic_permutation_cart_bonded core:CyclicGeometryTwoChainTests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometryTwoChainTests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_atr core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_dun core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_elec core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_rep core:CyclicGeometryTwoChainTests:test_cyclic_permutation_fa_sol core:CyclicGeometryTwoChainTests:test_cyclic_permutation_hbonds core:CyclicGeometryTwoChainTests:test_cyclic_permutation_omega core:CyclicGeometryTwoChainTests:test_cyclic_permutation_p_aa_pp core:CyclicGeometryTwoChainTests:test_cyclic_permutation_pro_close core:CyclicGeometryTwoChainTests:test_cyclic_permutation_rama core:CyclicGeometryTwoChainTests:test_cyclic_permutation_rama_prepro core:CyclicGeometryTwoChainTests:test_cyclic_permutation_talaris2014 core:CyclicGeometryTwoChainTests:test_cyclic_permutation_yhh_planarity core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_cart_bonded core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_atr core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_dun core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_elec core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_rep core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_sol core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_hbonds core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_omega core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_p_aa_pp core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_pro_close core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_rama core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_rama_prepro core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_talaris2014 core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_yhh_planarity core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_beta_nov15 core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_atr core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_dun core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_elec core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_rep core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_sol core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_hbonds core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_lk_ball_wtd core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_omega core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_pro_close core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_rama core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_yhh_planarity core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_beta_nov16 core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_atr core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_dun_dev core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_dun_rot core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_dun_semi core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_elec core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_atr_xover4 core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_elec core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_rep_xover4 core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_rep core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_fa_sol core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_hbonds core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_hxl_tors core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_lk_ball core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_lk_ball_bridge core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_lk_ball_bridge_uncpl core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_lk_ball_iso core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_omega core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_pro_close core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_rama core:CyclicGeometry_betanov16_TwoChainTests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_dun_dev core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_dun_semi core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_atr_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_rep_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_rep core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_lk_ball_bridge core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_lk_ball_bridge_uncpl core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_pro_close core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_rama_prepro core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_beta core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_cart_bonded core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_atr core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_dun_rot core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_elec core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_intra_elec core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_sol core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_hbonds core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_hxl_tors core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_lk_ball core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_lk_ball_iso core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_omega core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_rama core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_beta_nov15 core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_atr core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_dun core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_elec core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_rep core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_fa_sol core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_hbonds core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_lk_ball_wtd core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_omega core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_pro_close core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_rama core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_nmethyl_betanov15_TwoChainTests:test_cyclic_permutation_yhh_planarity core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_beta_nov15 core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_atr core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_dun core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_elec core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_rep core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_sol core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_hbonds core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_lk_ball_wtd core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_omega core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_pro_close core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_rama core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_yhh_planarity core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_beta_nov16 core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_atr core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_dun_dev core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_dun_rot core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_dun_semi core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_elec core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_atr_xover4 core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_elec core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_rep_xover4 core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_rep core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_sol core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_hbonds core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_hxl_tors core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_lk_ball core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_lk_ball_bridge core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_lk_ball_bridge_uncpl core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_lk_ball_iso core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_omega core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_pro_close core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_rama core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_rama_prepro core:PCSDataTests:test_PCSData_creation_by_NMRDataFactory core:PCSDataTests:test_PCSData_instantiation core:PCSDataTests:test_PCSData_score_calculation_with_gridsearch core:PCSDataTests:test_PCSData_score_calculation_with_spinlabel core:PCSDataTests:test_scaled_PCSData_score_calculation core:PDB_w_glycans_IO:test_glycan_fragment core:PDB_w_glycans_IO:test_pdb_io core:PeptoidDesignTests:test_design_001_601_602 core:PeptoidDesignTests:test_design_hydrophobic_aa_001_601_602 core:RotamerSetsTests:test_rotamer_set_add_rotamer_into_existing_group1 core:RotamerSetsTests:test_rotamer_set_add_rotamer_into_existing_group2 core:RotamerSetsTests:test_rotamer_set_add_rotamer_into_existing_group3 core:RotamerSetsTests:test_rotamer_set_add_rotamer_into_existing_group4 core:RotamerSetsTests:test_rotamer_set_residue_type_offsets core:RotamerSetsTests:test_rotamer_sets core:SequenceSymmetricAnnealerTests:test_chain_similarity_after_packing core:SequenceSymmetricAnnealerTests:test_chain_similarity_after_packing_cli core:SequenceSymmetricAnnealerTests:test_chain_similarity_with_virtual_root core:SequenceSymmetricAnnealerTests:test_recover_symmetry core:SequenceSymmetricAnnealerTests:test_residue_selectors core:SequenceSymmetricAnnealerTests:test_unequal_chain_lengths protocols:AddMembraneMoverTest:test_anchored_foldtree protocols:AddMembraneMoverTest:test_conformation_invariant protocols:AddMembraneMoverTest:test_default_membrane_position protocols:AddMembraneMoverTest:test_existing_membrane_rsd protocols:AddMembraneMoverTest:test_initial_foldtree protocols:AddMembraneMoverTest:test_initial_spans_setup protocols:AddMembraneMoverTest:test_membrane_jump_tracking protocols:AddMembraneMoverTest:test_membrane_rsd_tracking protocols:AddMembraneMoverTest:test_multi_mem_pose1 protocols:AddMembraneMoverTest:test_multi_mem_pose2 protocols:AddMembraneMoverTest:test_single_tm_span_pose protocols:EnergyBasedClusteringTests_oligourea:test_cartesian_cluster_cyclic_oligourea protocols:EnergyBasedClusteringTests_oligourea:test_cartesian_cluster_cyclic_oligourea_s2_symm protocols:EnergyBasedClusteringTests_oligourea:test_dihedral_cluster_cyclic_oligourea protocols:MRSJobQueenTests:test_MRSJobQueen_with_good_input protocols:MRSJobQueenTests:test_incorrect_attribute_value protocols:MRSJobQueenTests:test_not_enough_job_results_for_next_node protocols:MRSJobQueenTests:test_tag_for_nonmover_nonfilter protocols:MRSJobQueenTests:test_typo_in_score_function protocols:MembraneUtil:test_angle_rmsd_method protocols:MembraneUtil:test_average_antiparallel_embeddings protocols:MembraneUtil:test_average_embeddings protocols:MembraneUtil:test_calc_helix_angles protocols:MembraneUtil:test_calc_helix_axis protocols:MembraneUtil:test_chain_com protocols:MembraneUtil:test_check_vector protocols:MembraneUtil:test_compute_embeddings_by_chain protocols:MembraneUtil:test_compute_structure_based_embedding1 protocols:MembraneUtil:test_compute_structure_based_embedding2 protocols:MembraneUtil:test_compute_structure_based_embedding3 protocols:MembraneUtil:test_compute_structure_based_embedding4 protocols:MembraneUtil:test_compute_structure_based_embedding5 protocols:MembraneUtil:test_compute_structure_based_embedding6 protocols:MembraneUtil:test_compute_structure_based_embedding7 protocols:MembraneUtil:test_compute_structure_based_embedding8 protocols:MembraneUtil:test_create_membrane_docking_foldtree_from_partners protocols:MembraneUtil:test_create_membrane_foldtree_anchor_com protocols:MembraneUtil:test_create_membrane_foldtree_anchor_pose_tmcom protocols:MembraneUtil:test_create_membrane_foldtree_anchor_tmcom protocols:MembraneUtil:test_create_membrane_multi_partner_foldtree_anchor_tmcom protocols:MembraneUtil:test_create_specific_membrane_foldtree protocols:MembraneUtil:test_is_fixed_on_fixed_memb protocols:MembraneUtil:test_is_fixed_on_moveable_memb protocols:MembraneUtil:test_is_independently_moveable_on_fixed_memb protocols:MembraneUtil:test_is_independently_moveable_on_independently_moveable_memb protocols:MembraneUtil:test_membrane_bb_rmsd_no_super protocols:MembraneUtil:test_membrane_bb_rmsd_no_super_allatom protocols:MembraneUtil:test_membrane_bb_rmsd_with_super protocols:MembraneUtil:test_membrane_bb_rmsd_with_super_allatom protocols:MembraneUtil:test_pose_tm_COM protocols:MembraneUtil:test_rsd_closest_chain_com protocols:MembraneUtil:test_rsd_closest_chain_tm_com protocols:MembraneUtil:test_rsd_closest_pose_tm_COM protocols:MembraneUtil:test_split_topology_by_chain_noshift protocols:MembraneUtil:test_split_topology_by_jump protocols:MembraneUtil:test_split_topology_by_jump_noshift protocols:MembraneUtil:test_tm_com protocols:MoverFactoryTests:test_MoverFactory_all_Mover_all_attributes_have_descriptions protocols:MoverFactoryTests:test_MoverFactory_all_Mover_complexTypes_have_descriptions protocols:MoverFactoryTests:test_all_movers_define_valid_xsds protocols:NubInitioMoverTests:test_name protocols:NubInitioMoverTests:test_one_motif protocols:NubInitioMoverTests:test_two_motifs protocols:RNA_DeNovoProtocolTest:test_sarcin_ricin_loop_fixed protocols:RNA_DeNovoProtocolTest:test_sarcin_ricin_loop_free_with_base_pair_steps protocols:RNA_DeNovoProtocolTest:test_save_times_option protocols:RotamerRecoveryTests:test_RotamerRecovery_main