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Revisions №61073

branch: master 「№61073」
Commited by: Daniel Farrell
GitHub commit link: 「8ef5837f2cd19a89」 「№4271」
Difference from previous tested commit:  code diff
Commit date: 2019-12-10 16:06:03
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug cppcheck alpine.gcc.build.debug gcc-9.gcc.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels ninja graphics static mac.clang.static.build.release linux.ui mac.ui build.xcode beautification code_quality.clang_analysis code_quality.clang_tidy serialization integration.addsan integration.mpi integration.release_debug integration.tensorflow integration.thread integration.tutorials integration.ubsan integration.valgrind integration maintenance.documentation performance profile linux.clang.python35.release.PyRosetta4.Debug linux.clang.python36.release.PyRosetta4.Debug linux.clang.python37.release.PyRosetta4.Debug mac.clang.python27.release.PyRosetta4.Debug mac.clang.python35.release.PyRosetta4.Debug mac.clang.python36.release.PyRosetta4.Debug mac.clang.python37.release.PyRosetta4.Debug linux.clang.python27.release.PyRosetta4.MinSizeRel linux.clang.python35.release.PyRosetta4.MinSizeRel linux.clang.python36.release.PyRosetta4.MinSizeRel linux.clang.python37.release.PyRosetta4.MinSizeRel mac.clang.python27.release.PyRosetta4.MinSizeRel mac.clang.python35.release.PyRosetta4.MinSizeRel mac.clang.python36.release.PyRosetta4.MinSizeRel mac.clang.python37.release.PyRosetta4.MinSizeRel ubuntu.clang.python27.release.PyRosetta4.MinSizeRel ubuntu.clang.python35.release.PyRosetta4.MinSizeRel ubuntu.clang.python36.release.PyRosetta4.MinSizeRel ubuntu.clang.python37.release.PyRosetta4.MinSizeRel linux.clang.python27.release.PyRosetta4.Release linux.clang.python35.release.PyRosetta4.Release linux.clang.python36.release.PyRosetta4.Release linux.clang.python37.release.PyRosetta4.Release mac.clang.python27.release.PyRosetta4.Release mac.clang.python35.release.PyRosetta4.Release mac.clang.python36.release.PyRosetta4.Release mac.clang.python37.release.PyRosetta4.Release ubuntu.clang.python27.release.PyRosetta4.Release ubuntu.clang.python35.release.PyRosetta4.Release ubuntu.clang.python36.release.PyRosetta4.Release ubuntu.clang.python37.release.PyRosetta4.Release release.PyRosetta4.conda.Release release.source scientific.antibody_grafting.debug scientific.antibody_grafting linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan linux.clang.unit.release linux.gcc.unit.release unit.ubsan gcc-9.gcc.unit util.apps

Merge pull request #4271 from RosettaCommons/danpf/crossover_bug_fix fix bug in baseEtableEnergy get_count_pair_function_trie

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Test: linux.gcc.python36.PyRosetta4.unit

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Test: linux.clang.score

Failed sub-tests (click for more details):
gen_potential gen_potential_ncaa_hybrid
Test: linux.gcc.score

Failed sub-tests (click for more details):
gen_potential gen_potential_ncaa_hybrid
Test: mac.clang.score

Failed sub-tests (click for more details):
gen_potential gen_potential_ncaa_hybrid
Test: gcc-9.gcc.unit

Failed sub-tests (click for more details):
core:ContactOrderEnergy_Tests:test_eval_energy core:MinimizerTests:test_dfpmin core:MinimizerTests:test_dfpmin_armijo core:MinimizerTests:test_dfpmin_armijo_nonmonotone core:MinimizerTests:test_lbfgs_armijo core:MinimizerTests:test_lbfgs_armijo_nonmonotone core:MinimizerTests:test_linmin_iterated core:MinimizerTests:test_linmin_iterated_atol core:MinimizerTests:test_simple_min core:MolFileIODataTests:test_extra_data core:MolFileIODataTests:test_sdfreader core:NPDHBondEnergyTests:test_hbonds_deriv_check_w_partial_torsional_flexibility core:NPDHBondEnergyTests:test_hbonds_w_sp2term_deriv_check_w_partial_torsional_flexibility core:NPDHBondEnergyTests:test_npd_hbond_symmetric_score_function_bad_symm_hbond_derivs core:NPDHBondEnergyTests:test_npd_hbonds_deriv_check_w_full_torsional_flexibility core:NPDHBondEnergyTests:test_npd_hbonds_deriv_check_w_full_torsional_flexibility_cyc_pep core:PCSDataSymmetryTests:test_PCSData_score_calculation_all_tags_automatic_symmetry_deduction core:PCSDataSymmetryTests:test_PCSData_score_calculation_all_tags_manual_symmetry_handling core:PCSDataTests:test_PCSData_creation_by_NMRDataFactory core:PCSDataTests:test_PCSData_instantiation core:PCSDataTests:test_PCSData_score_calculation_with_gridsearch core:PCSDataTests:test_PCSData_score_calculation_with_spinlabel core:PCSDataTests:test_scaled_PCSData_score_calculation core:PCSMultiSetTests:test_PCSMultiSet_instantiation_and_getters core:PCSMultiSetTests:test_PCSMultiSet_score_calculation_from_fixed_tensor core:PCSMultiSetTests:test_PCSMultiSet_score_calculation_with_gridsearch core:PCSMultiSetTests:test_PCSMultiSet_score_calculation_with_spinlabel core:PCSSingleSetSymmetryTests:test_calc_tensor_and_score_nls_automatic_symmetry_deduction core:PCSSingleSetSymmetryTests:test_calc_tensor_and_score_nls_manual_symmetry_handling core:PCSSingleSetSymmetryTests:test_calc_tensor_and_score_svd_automatic_symmetry_deduction core:PCSSingleSetSymmetryTests:test_calc_tensor_and_score_svd_manual_symmetry_handling core:PCSSingleSetTests:test_PCSSingleSet_instantiation_and_getters core:PCSSingleSetTests:test_PCSSingleSet_instantiation_and_scaling core:PCSSingleSetTests:test_calc_tensor_and_score_nls core:PCSSingleSetTests:test_calc_tensor_and_score_nls_fixed_XaxXrh core:PCSSingleSetTests:test_calc_tensor_and_score_nls_svd_different_weightings core:PCSSingleSetTests:test_calc_tensor_and_score_svd core:PCSSingleSetTests:test_calc_tensor_and_score_svd_on_scaled_data core:PDB_IO:test_pdb_io core:PDB_IO:test_pdb_io_seqres core:PDB_IO:test_pdb_read_d_aa core:PDB_IO:test_pdb_read_partial_residues core:PDB_w_glycans_IO:test_glycan_fragment core:PDB_w_glycans_IO:test_pdb_io core:PREDataTests:test_PREData_creation_by_NMRFactory core:PREDataTests:test_PREData_instantiation core:PREDataTests:test_pre_score_calculation_with_explicit_spinlabel_coordinates core:PREDataTests:test_pre_score_calculation_with_implicit_spinlabel_ensemble core:PREDataTests:test_pre_score_calculation_with_metal_ion_gridsearch core:PREMultiSetTests:test_PREMultiSet_instantiation_and_data_scaling core:PREMultiSetTests:test_PREMultiSet_instantiation_and_getters_and_setters core:PREMultiSetTests:test_find_spinlabel_position_and_pre_score_calculation core:PREMultiSetTests:test_pre_r2_score_calculation_with_spinlabel core:PREMultiSetTests:test_pre_score_calculation_with_gridsearch core:PeptoidDesignTests:test_design_001_601_602 core:PeptoidDesignTests:test_design_hydrophobic_aa_001_601_602 protocols:MPLipidAccessibilityTest:test_mp_lipid_accessibility protocols:MPLipidAccessibilityTest:test_parse_my_tag_input protocols:MRSJobQueenTests:test_MRSJobQueen_with_good_input protocols:MRSJobQueenTests:test_incorrect_attribute_value protocols:MRSJobQueenTests:test_not_enough_job_results_for_next_node protocols:MRSJobQueenTests:test_tag_for_nonmover_nonfilter protocols:MRSJobQueenTests:test_typo_in_score_function protocols:MembraneUtil:test_angle_rmsd_method protocols:MembraneUtil:test_average_antiparallel_embeddings protocols:MembraneUtil:test_average_embeddings protocols:MembraneUtil:test_calc_helix_angles protocols:MembraneUtil:test_calc_helix_axis protocols:MembraneUtil:test_chain_com protocols:MembraneUtil:test_check_vector protocols:MembraneUtil:test_compute_embeddings_by_chain protocols:MembraneUtil:test_compute_structure_based_embedding1 protocols:MembraneUtil:test_compute_structure_based_embedding2 protocols:MembraneUtil:test_compute_structure_based_embedding3 protocols:MembraneUtil:test_compute_structure_based_embedding4 protocols:MembraneUtil:test_compute_structure_based_embedding5 protocols:MembraneUtil:test_compute_structure_based_embedding6 protocols:MembraneUtil:test_compute_structure_based_embedding7 protocols:MembraneUtil:test_compute_structure_based_embedding8 protocols:MembraneUtil:test_create_membrane_docking_foldtree_from_partners protocols:MembraneUtil:test_create_membrane_foldtree_anchor_com protocols:MembraneUtil:test_create_membrane_foldtree_anchor_pose_tmcom protocols:MembraneUtil:test_create_membrane_foldtree_anchor_tmcom protocols:MembraneUtil:test_create_membrane_multi_partner_foldtree_anchor_tmcom protocols:MembraneUtil:test_create_specific_membrane_foldtree protocols:MembraneUtil:test_is_fixed_on_fixed_memb protocols:MembraneUtil:test_is_fixed_on_moveable_memb protocols:MembraneUtil:test_is_independently_moveable_on_fixed_memb protocols:MembraneUtil:test_is_independently_moveable_on_independently_moveable_memb protocols:MembraneUtil:test_membrane_bb_rmsd_no_super protocols:MembraneUtil:test_membrane_bb_rmsd_no_super_allatom protocols:MembraneUtil:test_membrane_bb_rmsd_with_super protocols:MembraneUtil:test_membrane_bb_rmsd_with_super_allatom protocols:MembraneUtil:test_pose_tm_COM protocols:MembraneUtil:test_rsd_closest_chain_com protocols:MembraneUtil:test_rsd_closest_chain_tm_com protocols:MembraneUtil:test_rsd_closest_pose_tm_COM protocols:MembraneUtil:test_split_topology_by_chain_noshift protocols:MembraneUtil:test_split_topology_by_jump protocols:MembraneUtil:test_split_topology_by_jump_noshift protocols:MembraneUtil:test_tm_com protocols:MotifGraftMoverTests:test_self_graft_recovery_oneFragment_using_end2endMatching protocols:MotifGraftMoverTests:test_self_graft_recovery_oneFragment_using_fixBBmatching protocols:MotifGraftMoverTests:test_self_graft_recovery_twoFragment_using_end2endMatching protocols:MotifGraftMoverTests:test_self_graft_recovery_twoFragment_using_fixBBmatching protocols:MoverFactoryTests:test_MoverFactory_all_Mover_all_attributes_have_descriptions protocols:MoverFactoryTests:test_MoverFactory_all_Mover_complexTypes_have_descriptions protocols:MoverFactoryTests:test_all_movers_define_valid_xsds protocols:NubInitioMoverTests:test_name protocols:NubInitioMoverTests:test_one_motif protocols:NubInitioMoverTests:test_two_motifs protocols:OopPuckMoverTest:test_OopPuckMoverMinus protocols:OopPuckMoverTest:test_OopPuckMoverPlus protocols:OopPuckMoverTest:test_OopPuckMoverSmall protocols:OptimizeMembranePositionMoverTest:test_default_constructor protocols:OptimizeMembranePositionMoverTest:test_parse_my_tag_input protocols:PREEnergyTests:test_PREEnergy_instantiation protocols:PREEnergyTests:test_score_calculation_with_spinlabel_bump_energy_filter protocols:PREEnergyTests:test_score_calculation_with_spinlabel_distance_filter protocols:PREEnergyTests:test_show_info protocols:PREMoverTests:test_PREMover_apply_function protocols:PREMoverTests:test_PREMover_instantiation_through_ctor protocols:PREMoverTests:test_PREMover_instantiation_through_factory protocols:PREMoverTests:test_PREMover_parse_my_tag_function protocols:PREMoverTests:test_PREMover_setters_and_getters protocols:PeptideDeriverFilterTests:test_assignment protocols:PeptideDeriverFilterTests:test_copy_ctor protocols:PeptideDeriverFilterTests:test_protocol protocols:PeptideDeriverFilterTests:test_report_format_parsing protocols:PeptideDeriverFilterTests:test_rosettascripts_options