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Revisions №61068

branch: master 「№61068」
Commited by: Sergey Lyskov
GitHub commit link: 「3f906ccf518b80b5」 「№4231」
Difference from previous tested commit:  code diff
Commit date: 2019-12-06 14:10:03
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug cppcheck alpine.gcc.build.debug gcc-9.gcc.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels ninja graphics static linux.ui mac.ui build.xcode beautification code_quality.clang_analysis serialization integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile release.PyRosetta4.Release release.source linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release gcc-9.gcc.unit util.apps

Merge pull request #4231 from RosettaCommons/sergey/submodules Adding tools, demos and documentation as submodules to main repository and fixing most of known scripts path to point to a new location. Rest of the scripts (and particularly all release scripts and clone scripts) will be fixed in a follow up PR.

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Test: gcc-9.gcc.unit

Failed sub-tests (click for more details):
core:ContactOrderEnergy_Tests:test_eval_energy core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_cart_bonded core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_atr core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_dun core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_elec core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_rep core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_fa_sol core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_hbonds core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_omega core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_p_aa_pp core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_pro_close core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_rama core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_rama_prepro core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_talaris2014 core:CyclicGeometryTwoChain_nmethyl_Tests:test_cyclic_permutation_yhh_planarity core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_beta_nov15 core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_atr core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_dun core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_elec core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_rep core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_fa_sol core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_hbonds core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_lk_ball_wtd core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_omega core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_pro_close core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_rama core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_betanov15_TwoChainTests:test_cyclic_permutation_yhh_planarity core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_dun_dev core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_dun_semi core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_atr_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_intra_rep_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_fa_rep core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_lk_ball_bridge core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_lk_ball_bridge_uncpl core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_pro_close core:CyclicGeometry_nmethyl_beta_TwoChainTests_A:test_cyclic_permutation_rama_prepro core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_beta core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_cart_bonded core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_atr core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_dun_rot core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_elec core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_intra_elec core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_fa_sol core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_hbonds core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_hxl_tors core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_lk_ball core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_lk_ball_iso core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_omega core:CyclicGeometry_nmethyl_beta_TwoChainTests_B:test_cyclic_permutation_rama protocols:MRSJobQueenTests:test_MRSJobQueen_with_good_input protocols:MRSJobQueenTests:test_incorrect_attribute_value protocols:MRSJobQueenTests:test_not_enough_job_results_for_next_node protocols:MRSJobQueenTests:test_tag_for_nonmover_nonfilter protocols:MRSJobQueenTests:test_typo_in_score_function