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Revisions №60882

branch: master 「№60882」
Commited by: Vikram K. Mulligan
GitHub commit link: 「768f9e3acc1da2cf」 「№4147」
Difference from previous tested commit:  code diff
Commit date: 2019-08-17 19:31:37
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug cppcheck mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels ninja graphics static mac.clang.static.build.release linux.ui mac.ui build.xcode beautification code_quality.clang_analysis serialization integration.addsan integration.mpi integration.release_debug integration.tensorflow integration.thread integration.tutorials integration.ubsan integration.valgrind integration performance profile linux.clang.python27.release.PyRosetta4.Debug linux.clang.python35.release.PyRosetta4.Debug linux.clang.python36.release.PyRosetta4.Debug linux.clang.python27.release.PyRosetta4.MinSizeRel linux.clang.python35.release.PyRosetta4.MinSizeRel ubuntu.clang.python27.release.PyRosetta4.MinSizeRel ubuntu.clang.python35.release.PyRosetta4.MinSizeRel ubuntu.clang.python36.release.PyRosetta4.MinSizeRel ubuntu.clang.python37.release.PyRosetta4.MinSizeRel linux.clang.python35.release.PyRosetta4.Release linux.clang.python36.release.PyRosetta4.Release ubuntu.clang.python27.release.PyRosetta4.Release ubuntu.clang.python35.release.PyRosetta4.Release ubuntu.clang.python36.release.PyRosetta4.Release ubuntu.clang.python37.release.PyRosetta4.Release release.source scientific.antibody_grafting.debug scientific.antibody_grafting scientific.antibody_snugdock scientific.fast_relax.debug scientific.ligand_scoring_ranking.debug scientific.ligand_scoring_ranking scientific.mp_f19_sequence_recovery linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan linux.clang.unit.release linux.gcc.unit.release unit.ubsan util.apps

Merge pull request #4147 from RosettaCommons/vmullig/count_cycpep_unique_sequences Add an app to count the unique cyclic peptide sequences given a symmetry type, using Burnside's lemma ...Also known as the lemma that is not Burnside's. Thanks to Todd Yeates for the math for this. This app: - [x] Computes the number of unique sequences using expressions derived by Todd using Burnside's lemma. - [x] Does this for SN-symmetric sequences, too. - [x] Debug N>2. - ~~Supports problems with achiral options.~~ -> Future pull request. - [x] Optionally counts the number of unique sequences by brute force (which only works for small numbers of unique sequences). - [x] Does this for SN-symmetric sequnces, too. - [x] Supports problems with achiral options (e.g. GLY, AIB). - [x] Optionally writes out all the unique sequences (provided they're a small enough number to write out). - [x] Promote this to a public app. - [x] Documentation. - [x] Beauty. - [x] Integration test. Documentation is here: https://www.rosettacommons.org/docs/latest/application_documentation/count-cycpep-sequences

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