Merge pull request #4003 from RosettaCommons/jkleman/SciBen_fixes
Jkleman/sci ben fixes
Most tests pass: https://benchmark.graylab.jhu.edu/revision?branch=&id=12668
* except antibodies - Jeli is looking into it
* mp_dock and mp_symdock - debug passes (https://benchmark.graylab.jhu.edu/revision?branch=&id=12684), release is still failing, requires Rebecca's expertise (asking her to fix those when merging her new ones in)
* PDB diagnostic - in Steven's hands
* docking wasn't run previously
* ligand docking - is in Shannon's hands
* stepwise RNA fixed for debug mode: https://benchmark.graylab.jhu.edu/revision?branch=&id=12686