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Revisions №60759

branch: master 「№60759」
Commited by: Vikram K. Mulligan
GitHub commit link: 「6cd4f066336d96d2」 「№3996」
Difference from previous tested commit:  code diff
Commit date: 2019-06-06 12:16:53
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.PyRosetta.unit linux.gcc.python37.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug cppcheck mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels ninja graphics static linux.ui mac.ui build.xcode beautification serialization integration.mpi integration.release_debug integration performance profile ubuntu.clang.python27.release.PyRosetta4.MinSizeRel ubuntu.clang.python35.release.PyRosetta4.MinSizeRel release.PyRosetta4.Release release.source linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan linux.clang.unit.release linux.gcc.unit.release util.apps

Merge pull request #3996 from RosettaCommons/vmullig/fix_fastrelax_disk_reads FastRelax repeatedly reads multiple scorefunction weights from disk, making it unusable on large clusters. Fixing this. Recent changes to FastRelax have it repeatedly reading not only its own relax script, but also scorefunction weights from disk. This means that I can't run anything that uses FastRelax or FastDesign on Mira or Theta, or other giant supercomputers. Fixing this again. We really need to implement something that firmly prohibits disk reads that are unmanaged by a central manager.

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Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
threefold_symm_peptide_design
Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup batch_relax broker_membrane buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm cart_min_glycans cartesianddg crosslinkermover_octahedral crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal crosslinkermover_tetrahedral_metal_asp crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tetrahedral_metal_d2_symmetry crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar crosslinkermover_trigonal_planar_c3_symm crosslinkermover_trigonal_pyramidal crosslinkermover_trigonal_pyramidal_c3_symm cyclization cycpep_design_pipeline d_workflow density_refine density_refine_symm docking_ensemble_prepack evolution farnesyl fast_relax fiber_diffraction_fad fold_and_dock ga_ligand_dock glycan_anomers hbnet_energy hbnet_energy_rosettascripts_linear hbnet_energy_symm homodimer_fnd_ref2015_memb hybridization hydrate_relax jrelax ligand_motif_design metalloprotein_abrelax mirror_symm mp_relax mr_protocols multistage_rs_replacement oligourea_design oligourea_predict pna pocket_relax ppi_v3_suiteA ppi_v3_suiteB ppi_v3_suiteC ppi_v3_suiteD ppi_v3_suiteE ppi_v3_suiteF ppi_v3_suiteG relax_w_allatom_cst remodel_disulfides_rosettascripts rs_flexbbmoves rs_loophash simple_cycpep_predict simple_cycpep_predict_angle simple_cycpep_predict_anglelength simple_cycpep_predict_cartesian simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_design simple_cycpep_predict_nmethyl simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_peptoid simple_cycpep_predict_setting simple_cycpep_predict_sidechain_isopeptide simple_cycpep_predict_sidechain_isopeptide_reverse simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_tbmb simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_cycpep_predict_tetrahedral_metal simple_cycpep_predict_tetrahedral_metal_asp simple_cycpep_predict_tma simple_cycpep_predict_trigonal_planar_metal simple_cycpep_predict_trigonal_pyramidal_metal small_molecule_lattice_dock stored_residue_subset symm_rotamer_boltzmann threefold_symm_peptide_design threefoldlinkermover_tbmb threefoldlinkermover_tbmb_symmetric vip voids_penalty_energy_design voids_penalty_energy_design_symmetry
Test: mac.clang.integration

Failed sub-tests (click for more details):
Enzrevert_xml ThreadingInputter add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup backrub_interface_ddG batch_relax broker_membrane buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm cart_min_glycans cartesianddg continuous_sewing_hasher crosslinkermover_octahedral crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal crosslinkermover_tetrahedral_metal_asp crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tetrahedral_metal_d2_symmetry crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar crosslinkermover_trigonal_planar_c3_symm crosslinkermover_trigonal_pyramidal crosslinkermover_trigonal_pyramidal_c3_symm cyclization cycpep_design_pipeline d_workflow density_refine density_refine_symm discontinuous_sewing_hasher docking_ensemble_prepack evolution farnesyl fast_relax features fiber_diffraction_fad fold_and_dock ga_ligand_dock glycan_anomers hbnet_energy hbnet_energy_rosettascripts_linear hbnet_energy_symm homodimer_fnd_ref2015_memb hybridization hydrate_relax jrelax ligand_motif_design loop_modeling membrane_relax membrane_relax_hbond metalloprotein_abrelax mirror_symm mp_relax mp_relax_w_ligand mr_protocols multistage_rs_replacement oligourea_design oligourea_predict pna pocket_relax ppi_v3_suiteA ppi_v3_suiteB ppi_v3_suiteC ppi_v3_suiteD ppi_v3_suiteE ppi_v3_suiteF ppi_v3_suiteG relax_w_allatom_cst remodel_disulfides remodel_disulfides_rosettascripts residue_energy_breakdown rotamer_recovery rs_flexbbmoves rs_loophash simple_cycpep_predict simple_cycpep_predict_angle simple_cycpep_predict_anglelength simple_cycpep_predict_cartesian simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_design simple_cycpep_predict_nmethyl simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_peptoid simple_cycpep_predict_setting simple_cycpep_predict_sidechain_isopeptide simple_cycpep_predict_sidechain_isopeptide_reverse simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_tbmb simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_cycpep_predict_tetrahedral_metal simple_cycpep_predict_tetrahedral_metal_asp simple_cycpep_predict_tma simple_cycpep_predict_trigonal_planar_metal simple_cycpep_predict_trigonal_pyramidal_metal small_molecule_lattice_dock stored_residue_subset symm_rotamer_boltzmann threefold_symm_peptide_design threefoldlinkermover_tbmb threefoldlinkermover_tbmb_symmetric vip voids_penalty_energy_design voids_penalty_energy_design_symmetry